Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 277 of 333
Found at i:91677369 original size:50 final size:50
Alignment explanation
Indices: 91677169--91677448 Score: 157
Period size: 46 Copynumber: 5.7 Consensus size: 50
91677159 TCATTTGTGC
* * *
91677169 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCA-AGATGT-A-A
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGG-CACAGATATGTGAGA
* *
91677215 GCTAGTGTAAGA-CATGAC-AGGGACAT-GCATCGGC-CTCG-TGATGT-A-A
1 GCTAGTGTAAGACCATGTCTA-GGACATGGCATCGGCAC-AGAT-ATGTGAGA
* * * *
91677261 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGATGT--G-
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC-ACAGATATGTGAGA
* *
91677306 TC-AGTGTAAGACCATGTCTAGGACATGGAATCGGCACAGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACAGATATGTGAGA
** *
91677355 GCTAGTGTAAGACCATGTCCTTACATGTCTGGGACATGGCATCATCACGGATATGTGAGA
1 GCTAGTGTAAGACCATGT-C-T--A------GGACATGGCATCGGCACAGATATGTGAGA
*
91677415 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCG
91677449 ACTTAATGGA
Statistics
Matches: 187, Mismatches: 21, Indels: 48
0.73 0.08 0.19
Matches are distributed among these distances:
44 10 0.05
45 16 0.09
46 84 0.45
48 1 0.01
49 1 0.01
50 27 0.14
51 1 0.01
52 1 0.01
54 1 0.01
58 1 0.01
59 1 0.01
60 43 0.23
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (50 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACAGATATGTGAGA
Found at i:91677411 original size:60 final size:60
Alignment explanation
Indices: 91677318--91677433 Score: 187
Period size: 60 Copynumber: 1.9 Consensus size: 60
91677308 AGTGTAAGAC
*
91677318 CATGTCTAGGACATGGAATCGGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCCTTA
1 CATGTCTAGGACATGGAATCAGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCCTTA
* * * *
91677378 CATGTCTGGGACATGGCATCATCACGGATATGTGAGAGCTAGTGTAAGACCATGTC
1 CATGTCTAGGACATGGAATCAGCACAGATATGTGAGAGCTAGTGTAAGACCATGTC
91677434 TGGGACATGG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (60 bp):
CATGTCTAGGACATGGAATCAGCACAGATATGTGAGAGCTAGTGTAAGACCATGTCCTTA
Found at i:91701302 original size:47 final size:47
Alignment explanation
Indices: 91701231--91701540 Score: 181
Period size: 49 Copynumber: 6.6 Consensus size: 47
91701221 AGATGCCAAC
* *
91701231 GCCATGTCCCTA-ACATGGTCTTACACTGGCTAACACATCAAAGTCGAT
1 GCCATGTCCC-AGACA-GGTCTTACACTGGCTCACACATCGAAGTCGAT
* * * * * *
91701279 GCCATGTCCTAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGC--TCACACATCGAAGTCGAT
* * * **
91701328 GCCGTGTCCCAGACAGGTCTCACACTGGCTCTCATCTATCGGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCACA-C-ATCGAAGTCGAT
* * *
91701377 GCCATGTCCCAGACAGGTCTTACACT-GAT-ACACAAC-AAG-CTGAC
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCACACATCGAAGTC-GAT
* * * * * * *
91701421 GCAATGTCCCAGATAGGTCTTACACTAGCTTGTATATC-TCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGC-T-CACA-CATCGAAGTCGAT
* * * * *
91701470 G-CATGTCCCAAACATGTCTTACACTAGCTCTCGTC-TC-AATGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCAC-ACATCGAA-GTCGAT
*
91701516 G-CATGTCCCAGACATGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
91701541 AGCACACTTA
Statistics
Matches: 203, Mismatches: 44, Indels: 32
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.00
44 27 0.13
45 4 0.02
46 34 0.17
47 20 0.10
48 40 0.20
49 76 0.37
50 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCACACATCGAAGTCGAT
Found at i:91701489 original size:48 final size:46
Alignment explanation
Indices: 91701437--91701543 Score: 133
Period size: 46 Copynumber: 2.3 Consensus size: 46
91701427 TCCCAGATAG
* * *
91701437 GTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAAACAT
1 GTCTTACACTAGC-TCT-CATCTCAAGGCCGATGCATGTCCCAAACAT
* * * *
91701485 GTCTTACACTAGCTCTCGTCTCAATGTCGATGCATGTCCCAGACAT
1 GTCTTACACTAGCTCTCATCTCAAGGCCGATGCATGTCCCAAACAT
91701531 GTCTTACACTAGC
1 GTCTTACACTAGC
91701544 ACACTTATCA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
46 37 0.71
47 2 0.04
48 13 0.25
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (46 bp):
GTCTTACACTAGCTCTCATCTCAAGGCCGATGCATGTCCCAAACAT
Found at i:91704012 original size:11 final size:11
Alignment explanation
Indices: 91703996--91704026 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
91703986 GATTTCAAAT
91703996 GTCGAATCATC
1 GTCGAATCATC
91704007 GTCGAATCATC
1 GTCGAATCATC
91704018 GTCGAATCA
1 GTCGAATCA
91704027 CTATCGTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (11 bp):
GTCGAATCATC
Found at i:91704457 original size:29 final size:27
Alignment explanation
Indices: 91704415--91704477 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 27
91704405 TTTTCCATTT
*
91704415 ATTTCACATTTTAA-CCACTACCTTTACA
1 ATTTCACAATTTAATCC-CTA-CTTTACA
*
91704443 CATTTCACAATTTAATCCCTATTTTACA
1 -ATTTCACAATTTAATCCCTACTTTACA
91704471 ATTTCAC
1 ATTTCAC
91704478 CAAAAATCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 7 0.23
28 6 0.19
29 16 0.52
30 2 0.06
ACGTcount: A:0.32, C:0.27, G:0.00, T:0.41
Consensus pattern (27 bp):
ATTTCACAATTTAATCCCTACTTTACA
Found at i:91704530 original size:21 final size:20
Alignment explanation
Indices: 91704506--91704545 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
91704496 ACTTGTTTAA
*
91704506 CTATCAACAATTATTCAAAAT
1 CTATCAACAATCA-TCAAAAT
*
91704527 CTATCATCAATCATCAAAA
1 CTATCAACAATCATCAAAA
91704546 CTCATGCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (20 bp):
CTATCAACAATCATCAAAAT
Found at i:91705884 original size:15 final size:15
Alignment explanation
Indices: 91705864--91705913 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
91705854 TAGTATTAAA
91705864 AGAAAACTATAGCTT
1 AGAAAACTATAGCTT
*
91705879 AGAAAATCCAT-G-TT
1 AGAAAA-CTATAGCTT
**
91705893 CCAAAACTATAGCTT
1 AGAAAACTATAGCTT
91705908 AGAAAA
1 AGAAAA
91705914 TCCATGTTCC
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
13 3 0.12
14 7 0.27
15 13 0.50
16 3 0.12
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (15 bp):
AGAAAACTATAGCTT
Found at i:91705899 original size:29 final size:29
Alignment explanation
Indices: 91705866--91705924 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
91705856 GTATTAAAAG
91705866 AAAACTATAGCTTAGAAAATCCATGTTCC
1 AAAACTATAGCTTAGAAAATCCATGTTCC
91705895 AAAACTATAGCTTAGAAAATCCATGTTCC
1 AAAACTATAGCTTAGAAAATCCATGTTCC
91705924 A
1 A
91705925 CTTCTTATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.27
Consensus pattern (29 bp):
AAAACTATAGCTTAGAAAATCCATGTTCC
Found at i:91706910 original size:28 final size:28
Alignment explanation
Indices: 91706878--91706986 Score: 94
Period size: 28 Copynumber: 3.9 Consensus size: 28
91706868 ACATACTTGT
* * *
91706878 ATATGGCCCACTAGGCCTAATCTCCCTC
1 ATATGGCCCACTAGGCCCAATCACACTC
* * * *
91706906 ATATGGTCCATTAGGCCCAATCACATTT
1 ATATGGCCCACTAGGCCCAATCACACTC
* * *
91706934 ATGTGGCCCACTAGGCCCAAATCACATTT
1 ATATGGCCCACTAGGCCC-AATCACACTC
* *
91706963 ATACGG-CCATTAGGCCCAATCACA
1 ATATGGCCCACTAGGCCCAATCACA
91706987 TTTACCGTCA
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
27 7 0.10
28 46 0.69
29 14 0.21
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.25
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACACTC
Found at i:91706947 original size:56 final size:56
Alignment explanation
Indices: 91706881--91706990 Score: 150
Period size: 56 Copynumber: 2.0 Consensus size: 56
91706871 TACTTGTATA
* * * *
91706881 TGGCCCACTAGG-CCTAATCTCCCTCATATGGTCCATTAGGCCCAATCACATTTATG
1 TGGCCCACTAGGCCCAAATCACACTCATACGG-CCATTAGGCCCAATCACATTTATG
* *
91706937 TGGCCCACTAGGCCCAAATCACATTTATACGGCCATTAGGCCCAATCACATTTA
1 TGGCCCACTAGGCCCAAATCACACTCATACGGCCATTAGGCCCAATCACATTTA
91706991 CCGTCATGCT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 34 0.72
57 13 0.28
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (56 bp):
TGGCCCACTAGGCCCAAATCACACTCATACGGCCATTAGGCCCAATCACATTTATG
Found at i:91706961 original size:29 final size:27
Alignment explanation
Indices: 91706917--91706990 Score: 103
Period size: 28 Copynumber: 2.7 Consensus size: 27
91706907 TATGGTCCAT
**
91706917 TAGGCCCAATCACATTTATGTGGCCCAC
1 TAGGCCCAATCACATTTATACGG-CCAC
*
91706945 TAGGCCCAAATCACATTTATACGGCCAT
1 TAGGCCC-AATCACATTTATACGGCCAC
91706973 TAGGCCCAATCACATTTA
1 TAGGCCCAATCACATTTA
91706991 CCGTCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 11 0.26
28 17 0.40
29 14 0.33
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26
Consensus pattern (27 bp):
TAGGCCCAATCACATTTATACGGCCAC
Found at i:91717268 original size:33 final size:33
Alignment explanation
Indices: 91717215--91717289 Score: 109
Period size: 33 Copynumber: 2.3 Consensus size: 33
91717205 GGCCTTGCTG
91717215 TGGTCTT-TCATTCACATGCCATAACCCGGTTA
1 TGGTCTTATCATTCACATGCCATAACCCGGTTA
* *
91717247 TGGTCTTATTATTCA-ATTGCCATAGCCCGGTTA
1 TGGTCTTATCATTCACA-TGCCATAACCCGGTTA
91717280 TGGTCTTATC
1 TGGTCTTATC
91717290 GGCAATTTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 8 0.21
33 30 0.79
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (33 bp):
TGGTCTTATCATTCACATGCCATAACCCGGTTA
Found at i:91717300 original size:33 final size:33
Alignment explanation
Indices: 91717231--91717296 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
91717221 TTCATTCACA
**
91717231 TGCCATAACCCGGTTATGGTCTTATTATTCAAT
1 TGCCATAACCCGGTTATGGTCTTATTAGGCAAT
* *
91717264 TGCCATAGCCCGGTTATGGTCTTA-TCGGCAAT
1 TGCCATAACCCGGTTATGGTCTTATTAGGCAAT
91717296 T
1 T
91717297 TGCCTTACTC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 6 0.21
33 23 0.79
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (33 bp):
TGCCATAACCCGGTTATGGTCTTATTAGGCAAT
Found at i:91721492 original size:30 final size:30
Alignment explanation
Indices: 91721436--91721493 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
91721426 AAAATTTTGT
*
91721436 GGCACACAGTCGTGTCACTACCCCATGTAC
1 GGCACACAGTCGTGTCACTACACCATGTAC
* *
91721466 GGCACACAGTTGTGT-AGCTAGACCATGT
1 GGCACACAGTCGTGTCA-CTACACCATGT
91721494 GGCACTGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (30 bp):
GGCACACAGTCGTGTCACTACACCATGTAC
Found at i:91721498 original size:28 final size:28
Alignment explanation
Indices: 91721433--91721498 Score: 71
Period size: 30 Copynumber: 2.3 Consensus size: 28
91721423 GCTAAAATTT
*
91721433 TGTGGCACACAGTCGTGTCACTACCCCA
1 TGTGGCACACAGTCGTGTCACTACACCA
* *
91721461 TGTACGGCACACAGTTGTGT-AGCTAGACCA
1 TGT--GGCACACAGTCGTGTCA-CTACACCA
91721491 TGTGGCAC
1 TGTGGCAC
91721499 TGAAAATTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
28 8 0.25
29 1 0.03
30 23 0.72
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (28 bp):
TGTGGCACACAGTCGTGTCACTACACCA
Found at i:91726560 original size:12 final size:12
Alignment explanation
Indices: 91726545--91726591 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
91726535 AATAAAATTG
*
91726545 AAATGAAAAGAA
1 AAATAAAAAGAA
*
91726557 AAATAAGAAGAA
1 AAATAAAAAGAA
**
91726569 AAATAAAAATCA
1 AAATAAAAAGAA
91726581 AAATAAAAAGA
1 AAATAAAAAGA
91726592 TAAGAGAATT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.77, C:0.02, G:0.11, T:0.11
Consensus pattern (12 bp):
AAATAAAAAGAA
Found at i:91732062 original size:14 final size:13
Alignment explanation
Indices: 91732038--91732067 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
91732028 GGTTGTTTAT
91732038 TAAACTAATTAAC
1 TAAACTAATTAAC
91732051 TAAACTTAATTAAC
1 TAAAC-TAATTAAC
91732065 TAA
1 TAA
91732068 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:91733708 original size:11 final size:12
Alignment explanation
Indices: 91733692--91733720 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
91733682 TAAGTAATGG
91733692 GATTTT-ATTTT
1 GATTTTAATTTT
91733703 GATTTTAATTTT
1 GATTTTAATTTT
91733715 GATTTT
1 GATTTT
91733721 TATTATCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (12 bp):
GATTTTAATTTT
Found at i:91734132 original size:43 final size:43
Alignment explanation
Indices: 91734079--91734490 Score: 389
Period size: 43 Copynumber: 9.5 Consensus size: 43
91734069 ATATTGATAT
* * **
91734079 ACACAATGCATCATCGGATATACTAAAACAACTATACTGGCAC
1 ACACAGTGCATCATCGGATATACCAAAGTAACTATACTGGCAC
* * *
91734122 ACACAGTGCATCATCGAATAAACCTAAA-AAACTATACTGGCAC
1 ACACAGTGCATCATCGGATATACC-AAAGTAACTATACTGGCAC
* * * *
91734165 ACACAGTGCATCATCAGATATACTAAAGCAACTATAATGGCAC
1 ACACAGTGCATCATCGGATATACCAAAGTAACTATACTGGCAC
* * * * * ** *
91734208 ATACAATGCATTATTGGATATACCGAAGTAACTATGTTGGCAA
1 ACACAGTGCATCATCGGATATACCAAAGTAACTATACTGGCAC
* * ** * *
91734251 ACACAGTGCATCATTGGATATATCAAAGCCACTGTACTAGCAC
1 ACACAGTGCATCATCGGATATACCAAAGTAACTATACTGGCAC
* *
91734294 ACACAGTGCATCATCGGATATACCGAAGTAACTATACTAGCAC
1 ACACAGTGCATCATCGGATATACCAAAGTAACTATACTGGCAC
* * * * *
91734337 ACATAGTGTATCATCGGATATACCGAAGTAACTATA-TAGACAA
1 ACACAGTGCATCATCGGATATACCAAAGTAACTATACT-GGCAC
* * *
91734380 ACACAGTTCATCATCGGATATACCAAAGTACCTATATTGGCAC
1 ACACAGTGCATCATCGGATATACCAAAGTAACTATACTGGCAC
* ** *
91734423 ATACAGTGAATCATCATCTGG-TATACGGAAGTAACTATACTGGCAT
1 ACACAGTG---CATCATC-GGATATACCAAAGTAACTATACTGGCAC
*
91734469 ACATAGTGCATCATCGGATATA
1 ACACAGTGCATCATCGGATATA
91734491 ACGAAGCATA
Statistics
Matches: 299, Mismatches: 61, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
42 6 0.02
43 254 0.85
44 4 0.01
46 33 0.11
47 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.24
Consensus pattern (43 bp):
ACACAGTGCATCATCGGATATACCAAAGTAACTATACTGGCAC
Found at i:91735523 original size:14 final size:14
Alignment explanation
Indices: 91735504--91735534 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
91735494 GTTCTTCCCC
91735504 TTTCTTTTGTTTCT
1 TTTCTTTTGTTTCT
*
91735518 TTTCTTTTTTTTCT
1 TTTCTTTTGTTTCT
91735532 TTT
1 TTT
91735535 TCTGAGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.84
Consensus pattern (14 bp):
TTTCTTTTGTTTCT
Found at i:91737960 original size:44 final size:43
Alignment explanation
Indices: 91737855--91737971 Score: 141
Period size: 44 Copynumber: 2.7 Consensus size: 43
91737845 ATAAAATTCT
* * *
91737855 AACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCC
1 AACGTCCCAAACGTGGTCTTACACGTAATCACAAATCGATGCC
*
91737898 -ACTGTCCCAGAAAG-GGTCTTACACGTAAATCACAAATCGATGCC
1 AAC-GTCCCA-AACGTGGTCTTACACGT-AATCACAAATCGATGCC
*
91737942 AACGTCCCAAACGTGGTCTTAAACG-AATCA
1 AACGTCCCAAACGTGGTCTTACACGTAATCA
91737972 TATATCAAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 11
0.79 0.08 0.14
Matches are distributed among these distances:
42 7 0.11
43 20 0.32
44 34 0.54
45 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.22
Consensus pattern (43 bp):
AACGTCCCAAACGTGGTCTTACACGTAATCACAAATCGATGCC
Found at i:91738067 original size:16 final size:17
Alignment explanation
Indices: 91738046--91738077 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
91738036 CGTGTAATGC
91738046 CCCAAAAATCC-AAAAA
1 CCCAAAAATCCTAAAAA
91738062 CCCAAAAATCCTAAAA
1 CCCAAAAATCCTAAAA
91738078 TCTTGAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.59, C:0.31, G:0.00, T:0.09
Consensus pattern (17 bp):
CCCAAAAATCCTAAAAA
Found at i:91739597 original size:29 final size:28
Alignment explanation
Indices: 91739565--91739668 Score: 97
Period size: 29 Copynumber: 3.6 Consensus size: 28
91739555 AGGTGATTTG
91739565 GGGCCTAATGGGCCATATGAATATGAATT
1 GGGCC-AATGGGCCATATGAATATGAATT
* * **
91739594 GGGCCTGATGAGCCATATGAATGCGAATT
1 GGGCC-AATGGGCCATATGAATATGAATT
91739623 GGGCCAGATGGGCCA-AGTG-A-ATGAAATT
1 GGGCCA-ATGGGCCATA-TGAATATG-AATT
*
91739651 GGGCCAATGGCCCATATG
1 GGGCCAATGGGCCATATG
91739669 CATGTATTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
27 10 0.16
28 13 0.21
29 39 0.63
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (28 bp):
GGGCCAATGGGCCATATGAATATGAATT
Found at i:91755486 original size:16 final size:16
Alignment explanation
Indices: 91755465--91755495 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
91755455 AACACACGGG
91755465 CACGAGAATGAAAACC
1 CACGAGAATGAAAACC
91755481 CACGAGAATGAAAAC
1 CACGAGAATGAAAAC
91755496 GACACGCCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.23, G:0.19, T:0.06
Consensus pattern (16 bp):
CACGAGAATGAAAACC
Found at i:91757517 original size:24 final size:25
Alignment explanation
Indices: 91757470--91757530 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
91757460 TTTATTTTCG
* **
91757470 TTATTTTATTTTTATTTCTCTTTTGA
1 TTATTTTATTTTCATTTCAATTTT-A
91757496 -T-TTTTATTTTCATTTCAATTTTA
1 TTATTTTATTTTCATTTCAATTTTA
91757519 TTATTTTATTTT
1 TTATTTTATTTT
91757531 GAAAGACATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 1 0.03
24 19 0.63
25 10 0.33
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.74
Consensus pattern (25 bp):
TTATTTTATTTTCATTTCAATTTTA
Found at i:91763091 original size:39 final size:39
Alignment explanation
Indices: 91763031--91763159 Score: 177
Period size: 39 Copynumber: 3.3 Consensus size: 39
91763021 CTTTAACCCA
* ** * * *
91763031 GATATTTTTCCAGCACGTAGCCTACGGACCTCAAGTCTG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCG
* *
91763070 GATATATTTCTAGCATATAGCCTGCGGATCTCATGTCCG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCG
*
91763109 GATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCG
91763148 GATATATTTCCA
1 GATATATTTCCA
91763160 ATCTCATATA
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (39 bp):
GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCG
Found at i:91774280 original size:40 final size:40
Alignment explanation
Indices: 91774235--91774418 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
91774225 CTCGTACAAG
* * *
91774235 GCCTTCGGGTCTTAGCCTGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
91774275 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
91774315 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
91774355 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
91774395 GCCCTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
91774419 CATTCGAATA
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:91779987 original size:40 final size:40
Alignment explanation
Indices: 91779935--91780116 Score: 242
Period size: 40 Copynumber: 4.5 Consensus size: 40
91779925 CGCACAAGGT
* * *
91779935 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
91779975 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
91780015 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
91780055 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
*
91780095 CCTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
91780117 CATTCGAATA
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:91780029 original size:80 final size:80
Alignment explanation
Indices: 91779897--91780116 Score: 252
Period size: 80 Copynumber: 2.8 Consensus size: 80
91779887 ACCCAAGCAT
** * * * *
91779897 CTTCGGAAT-TTAG-CCGGATATAACCACTCGCAC-AAGGTCTTCGGGTCTTAGCCCGGATATGG
1 CTTCGG-ATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
*
91779959 TC-ACTAGCATAAATGC
65 -CAACTAGCACAAATGC
* *
91779975 CTTCGGGA-CTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
*
91780039 CAACTCGCACAAATGC
65 CAACTAGCACAAATGC
* * * *
91780055 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCCTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
91780117 CATTCGAATA
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 9 0.07
79 22 0.18
80 90 0.74
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
AACTAGCACAAATGC
Found at i:91789293 original size:39 final size:39
Alignment explanation
Indices: 91789250--91789382 Score: 160
Period size: 39 Copynumber: 3.4 Consensus size: 39
91789240 GGTCTTTAAC
** * * *
91789250 CCGGATATATTTCCAACACGTCGCCTGCAGACCTCAAGT
1 CCGGATATATTTCCAACATATAGCCTGCGGACCTCATGT
* * * *
91789289 CCGGATATATTTCTAGCATATAACCTGCGGATCTCATGT
1 CCGGATATATTTCCAACATATAGCCTGCGGACCTCATGT
*
91789328 CCGGATATTTTTCCAGA-ATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCA-ACATATAGCCTGCGGACCTCATGT
91789367 CCGGATATATTTCCAA
1 CCGGATATATTTCCAA
91789383 TCTCATGTAT
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
38 1 0.01
39 77 0.99
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (39 bp):
CCGGATATATTTCCAACATATAGCCTGCGGACCTCATGT
Found at i:91806557 original size:17 final size:17
Alignment explanation
Indices: 91806535--91806572 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
91806525 GGATTTGAAG
* *
91806535 AGTTTATTTGCAAGTCA
1 AGTTTACTTGCAAGACA
91806552 AGTTTACTTGCAAGACA
1 AGTTTACTTGCAAGACA
91806569 AGTT
1 AGTT
91806573 AAATAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (17 bp):
AGTTTACTTGCAAGACA
Found at i:91809861 original size:67 final size:67
Alignment explanation
Indices: 91809753--91809926 Score: 249
Period size: 67 Copynumber: 2.6 Consensus size: 67
91809743 GAACAGATAT
* * * * * *
91809753 ATATATGTAGTGAAGCCACCAGATTACAACGAGGCTACCAGATATTGTGACAAAGTCACCAGAAT
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACAAAGTCACCAGAAC
*
91809818 AG
66 AA
* *
91809820 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACAAAGTCACCAGAAC
91809885 AA
66 AA
* *
91809887 ACATATGTGGCGAGGCCACCAGATTGCAGCAAGGCTACCA
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTACCA
91809927 AAACGCTTCC
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
67 95 1.00
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.18
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACAAAGTCACCAGAAC
AA
Found at i:91813414 original size:17 final size:17
Alignment explanation
Indices: 91813392--91813429 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
91813382 AGATTTAAAG
*
91813392 AGTTTACTTGCAAGTCA
1 AGTTTACTTGCAAGACA
*
91813409 AGTTTACTTGTAAGACA
1 AGTTTACTTGCAAGACA
91813426 AGTT
1 AGTT
91813430 AAACAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (17 bp):
AGTTTACTTGCAAGACA
Found at i:91822379 original size:20 final size:20
Alignment explanation
Indices: 91822356--91822397 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
91822346 AAATATTTAA
**
91822356 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAGTT
91822376 ATAATATTAAATGAATAGTT
1 ATAATATTAAATGAATAGTT
91822396 AT
1 AT
91822398 GTGTTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAGTT
Found at i:91824117 original size:30 final size:30
Alignment explanation
Indices: 91824083--91824178 Score: 76
Period size: 30 Copynumber: 3.2 Consensus size: 30
91824073 AGGTATATGT
91824083 ATAAGAGTATGTTCAAACTGAATATTATTA
1 ATAAGAGTATGTTCAAACTGAATATTATTA
*** *
91824113 ATAAGA--AT-AAAAATACTATAAGGTA-TATGT-
1 ATAAGAGTATGTTCAA-ACT-GAA--TATTAT-TA
91824143 ATAAGAGTATGTTCAAACTGAATATTATTA
1 ATAAGAGTATGTTCAAACTGAATATTATTA
91824173 ATAAGA
1 ATAAGA
91824179 ATAAAAATAC
Statistics
Matches: 48, Mismatches: 8, Indels: 20
0.63 0.11 0.26
Matches are distributed among these distances:
27 2 0.04
28 5 0.10
29 5 0.10
30 24 0.50
31 5 0.10
32 5 0.10
33 2 0.04
ACGTcount: A:0.48, C:0.05, G:0.14, T:0.33
Consensus pattern (30 bp):
ATAAGAGTATGTTCAAACTGAATATTATTA
Found at i:91824165 original size:60 final size:60
Alignment explanation
Indices: 91824072--91824191 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
91824062 TTGTAGGGAA
91824072 AAGGTATATGTATAAGAGTATGTTCAAACTGAATATTATTAATAAGAATAAAAATACTAT
1 AAGGTATATGTATAAGAGTATGTTCAAACTGAATATTATTAATAAGAATAAAAATACTAT
91824132 AAGGTATATGTATAAGAGTATGTTCAAACTGAATATTATTAATAAGAATAAAAATACTAT
1 AAGGTATATGTATAAGAGTATGTTCAAACTGAATATTATTAATAAGAATAAAAATACTAT
91824192 TTTTGCTTCT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.48, C:0.05, G:0.13, T:0.33
Consensus pattern (60 bp):
AAGGTATATGTATAAGAGTATGTTCAAACTGAATATTATTAATAAGAATAAAAATACTAT
Found at i:91826736 original size:19 final size:20
Alignment explanation
Indices: 91826712--91826749 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91826702 GGTACCACCA
91826712 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
91826731 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
91826750 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:91827045 original size:46 final size:45
Alignment explanation
Indices: 91826978--91827146 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 45
91826968 CGCCCCTAAG
* *
91826978 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTT-GCATCCATAAA
* * * *
91827024 TGAACTCGGAATCAACTCAACGAGTTCAGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTGCATCCATAAA
* * *
91827071 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGAC-GTTGCATCCATAAA
91827117 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
91827147 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 1 0.01
46 55 0.54
47 27 0.26
48 1 0.01
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCATCCATAAA
Found at i:91827089 original size:93 final size:93
Alignment explanation
Indices: 91826979--91827149 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
91826969 GCCCCTAAGT
* *
91826979 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGAATCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGAATCAACTCAA
91827044 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * * *
91827072 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGAATCAACTCAA
*
91827137 CGAGTTCGGATGC
66 CGAGTTCAGATGC
91827150 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGAATCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:91835518 original size:40 final size:40
Alignment explanation
Indices: 91835463--91835657 Score: 243
Period size: 40 Copynumber: 4.9 Consensus size: 40
91835453 AGATATAGCT
* * *
91835463 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
91835503 ACTCGCACAATTGCCTTTGGGACTTAGCCCGGTTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
91835543 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTATAGTA
* *
91835583 ACTCGCACAAATGCCTTCGGGACTT-GCCCGG-AACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
91835622 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
91835658 CATCCAAATA
Statistics
Matches: 134, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 30 0.22
40 99 0.74
41 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:91839798 original size:27 final size:27
Alignment explanation
Indices: 91839767--91839944 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91839757 TAAATTGTAC
91839767 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91839794 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91839820 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91839848 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91839876 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91839903 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91839930 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91839945 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91839881 original size:82 final size:81
Alignment explanation
Indices: 91839768--91839923 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91839758 AAATTGTACA
* *
91839768 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91839832 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91839849 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91839914 TGCGAGTTGA
65 TGCGAATTGA
91839924 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91839935 original size:82 final size:81
Alignment explanation
Indices: 91839764--91839944 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
91839754 GATTAAATTG
* *
91839764 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91839829 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91839845 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91839909 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91839927 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91839945 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91846896 original size:40 final size:40
Alignment explanation
Indices: 91846852--91847042 Score: 192
Period size: 40 Copynumber: 4.8 Consensus size: 40
91846842 GGATATAGCT
* *
91846852 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTA-AGTA
* * * *
91846892 ACTCGCACAATTGCCTTCGAGACTTAGCTCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAAGTA
* * *
91846932 ACTCGCAAAAATGCCATCGTGACTTAGCCCGGATTTAA-TA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TTAAGTA
* * *
91846972 ACTCGCACAAATGCCTTCGGGACTT-GCCAGGAACT-AGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATTAAGTA
* * *
91847011 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
91847043 TTATCATCCA
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
38 1 0.01
39 29 0.23
40 89 0.72
41 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAAGTA
Found at i:91849012 original size:19 final size:20
Alignment explanation
Indices: 91848988--91849025 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91848978 GGTACCATCA
91848988 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
91849007 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
91849026 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:91849365 original size:93 final size:93
Alignment explanation
Indices: 91849255--91849425 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
91849245 GCCCCTAAGT
* *
91849255 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTAAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTAAACTCAA
*
91849320 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
91849348 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAATTGAACTGGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTAAACTCAA
91849413 CGAGTTCGGATGC
66 CGAGTTCGGATGC
91849426 TCAACAATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTAAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91849407 original size:46 final size:45
Alignment explanation
Indices: 91849254--91849419 Score: 156
Period size: 46 Copynumber: 3.6 Consensus size: 45
91849244 CGCCCCTAAG
* * * *
91849254 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCAT-AA
* * * * * *
91849300 TGAACTCGGACTAAACTCAATGAGTTCGGATGCCTAGTTACAT-C-TCA
1 TGAACTCGGACTCAACTCAACGAGTTC--A-GAC-ATTTGCATCCATAA
*
91849347 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAA
*
91849392 TTGAACTGGGACTCAACTCAACGAGTTC
1 -TGAACTCGGACTCAACTCAACGAGTTC
91849420 GGATGCTCAA
Statistics
Matches: 95, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 49 0.52
47 25 0.26
48 1 0.01
49 3 0.03
50 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAA
Found at i:91849879 original size:30 final size:30
Alignment explanation
Indices: 91849845--91849904 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
91849835 ATTTAATACG
91849845 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
91849875 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
91849905 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:91861446 original size:22 final size:23
Alignment explanation
Indices: 91861421--91861466 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
91861411 CAACCAAATC
91861421 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
91861443 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
91861466 A
1 A
91861467 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:91861472 original size:23 final size:23
Alignment explanation
Indices: 91861428--91861472 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91861418 ATCAATTCAA
*
91861428 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
91861451 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
91861473 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:91869239 original size:22 final size:23
Alignment explanation
Indices: 91869214--91869259 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
91869204 CAACCAAATC
91869214 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
91869236 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
91869259 A
1 A
91869260 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:91869265 original size:23 final size:23
Alignment explanation
Indices: 91869221--91869265 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91869211 ATCAATTCAA
*
91869221 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
91869244 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
91869266 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:91893367 original size:40 final size:40
Alignment explanation
Indices: 91893270--91893455 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
91893260 TTGAACGATG
* * * *
91893270 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
91893310 T-CGGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91893350 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91893390 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
91893431 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91893456 AATGAGTAGC
Statistics
Matches: 132, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
39 5 0.04
40 113 0.86
41 14 0.11
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91901364 original size:39 final size:38
Alignment explanation
Indices: 91901279--91901407 Score: 190
Period size: 39 Copynumber: 3.3 Consensus size: 38
91901269 GGACTAAGAT
91901279 CCGAAGGCATTTGTGCGAG-TACT-AATCCGGGTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAAT-CGGGTAAGTC
91901316 CCGAAGGCATTTGTGCGAGTTACTAAATCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCGGG-TAAGTC
* *
91901355 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCGGG-TAAGTC
91901395 CCGAAGGCATTTG
1 CCGAAGGCATTTG
91901408 AACGAGTAGC
Statistics
Matches: 85, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
37 19 0.22
38 8 0.09
39 34 0.40
40 24 0.28
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCGGGTAAGTC
Found at i:91901407 original size:40 final size:39
Alignment explanation
Indices: 91901227--91901407 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
91901217 TGAACGATGT
* * * *
91901227 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
91901267 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAG-TACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
91901305 CCGGG-TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
91901343 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
91901383 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
91901408 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
36 1 0.01
37 23 0.18
38 16 0.13
39 34 0.27
40 43 0.34
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91901414 original size:79 final size:76
Alignment explanation
Indices: 91901279--91901440 Score: 209
Period size: 79 Copynumber: 2.1 Consensus size: 76
91901269 GGACTAAGAT
* **
91901279 CCGAAGGCATTTGTGCGAGTACTAATCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAA
1 CCGAAGGCATTTGTGCGAGTACTAAACCGGGTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAA
* *
91901343 TCGGGTTAAGTC
65 TCCGGTTAAATC
*
91901355 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAG-TACTA-AACCGGG-TAAGTCCCGAAGGCATTTGAACGAGTAGCTA
* *
91901420 TATCCGGTTAAATT
63 AATCCGGTTAAATC
91901434 CCGAAGG
1 CCGAAGG
91901441 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
76 19 0.26
77 5 0.07
78 8 0.11
79 42 0.57
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (76 bp):
CCGAAGGCATTTGTGCGAGTACTAAACCGGGTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAAT
CCGGTTAAATC
Found at i:91906620 original size:22 final size:21
Alignment explanation
Indices: 91906595--91906657 Score: 76
Period size: 19 Copynumber: 3.0 Consensus size: 21
91906585 TACAAATTAA
*
91906595 ATCTCTAAGATTACAAAATCAT
1 ATCTCTAAGATTGC-AAATCAT
*
91906617 ATCTTCTAAGATTGCATATCAT
1 ATC-TCTAAGATTGCAAATCAT
91906639 A--TCTAAGATTGCAAATCAT
1 ATCTCTAAGATTGCAAATCAT
91906658 TGAAGATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 17 0.46
22 10 0.27
23 10 0.27
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (21 bp):
ATCTCTAAGATTGCAAATCAT
Found at i:91906628 original size:23 final size:22
Alignment explanation
Indices: 91906585--91906657 Score: 64
Period size: 19 Copynumber: 3.5 Consensus size: 22
91906575 AAAAGGTATC
* *
91906585 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
91906606 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
91906629 TGCATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
*
91906648 TGCAAATCAT
1 TACAAATCAT
91906658 TGAAGATTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
19 17 0.38
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:91906814 original size:21 final size:20
Alignment explanation
Indices: 91906776--91906815 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
91906766 TTGGACTTCG
**
91906776 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
91906796 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
91906816 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:91907125 original size:44 final size:45
Alignment explanation
Indices: 91907022--91907198 Score: 248
Period size: 45 Copynumber: 4.0 Consensus size: 45
91907012 ACTATCTTTG
* * *
91907022 ATCTACTCCCCGTCTAATACAGAGACGCCAAATATGTTATCTTCG
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
* * *
91907067 ATTTGCTCCTCGTCTAATACAGAGACGCCAAATCTGCT-TCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
* *
91907111 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
* * *
91907156 ATGTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTT
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTT
91907199 GGATCTGATT
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
44 39 0.33
45 78 0.67
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
Found at i:91907178 original size:89 final size:89
Alignment explanation
Indices: 91907022--91907191 Score: 268
Period size: 89 Copynumber: 1.9 Consensus size: 89
91907012 ACTATCTTTG
* * * *
91907022 ATCTACTCCCCGTCTAATACAGAGACGCCAAATATGTTATCTTCGATTTGCTCCTCGTCTAATAC
1 ATCTACTCCCCGTCTAATACAGAGACGCCAAATATGTTATCTCCAATGTGCTCCCCGTCTAATAC
91907087 AGAGACGCCAAATCTGCTTCTTCA
66 AGAGACGCCAAATCTGCTTCTTCA
* * *
91907111 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATGTGCTCCCCGTCTAATAC
1 ATCTACTCCCCGTCTAATACAGAGACGCCAAATATGTTATCTCCAATGTGCTCCCCGTCTAATAC
*
91907176 AGAGATGCCAAATCTG
66 AGAGACGCCAAATCTG
91907192 TCATCTTGGA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (89 bp):
ATCTACTCCCCGTCTAATACAGAGACGCCAAATATGTTATCTCCAATGTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTGCTTCTTCA
Found at i:91907350 original size:78 final size:78
Alignment explanation
Indices: 91907221--91907410 Score: 283
Period size: 78 Copynumber: 2.4 Consensus size: 78
91907211 ATGCAAACAC
* * *
91907221 ATGAAGGT-CAGATCTACTATGTCTTCGATCTACTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGTCCA-ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
91907285 TTGGATCTGCTTTA
65 TTGGATCTGCTTCA
* * *
91907299 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGTCAAATCATCT
1 ATGAAGGTCCAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
91907364 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
91907377 ATGAAGGTCAAATCTGCTGTGTCTTCGATCTGCT
1 ATGAAGGTCCAATCTGCTATGTCTTCGATCTGCT
91907411 GTGTCTTCGA
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 99 0.98
79 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (78 bp):
ATGAAGGTCCAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:91907409 original size:16 final size:16
Alignment explanation
Indices: 91907388--91907426 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
91907378 TGAAGGTCAA
91907388 ATCTGCTGTGTCTTCG
1 ATCTGCTGTGTCTTCG
91907404 ATCTGCTGTGTCTTCG
1 ATCTGCTGTGTCTTCG
91907420 ATCTGCT
1 ATCTGCT
91907427 CCCCGTGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.08, C:0.26, G:0.23, T:0.44
Consensus pattern (16 bp):
ATCTGCTGTGTCTTCG
Found at i:91907471 original size:94 final size:94
Alignment explanation
Indices: 91907318--91907504 Score: 311
Period size: 94 Copynumber: 2.0 Consensus size: 94
91907308 CAATCTGTTA
* * *
91907318 TGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGTCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAG
*
91907383 GTCAAATCTGCTGTGTCTTCGATCTGCTG
66 GTCAAATCTGCTATGTCTTCGATCTGCTG
* *
91907412 TGTCTTCGATCTGCTCCCCGTGTAATACATAGATGCCAAATCATCTTAGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAG
*
91907477 GTCAGATCTGCTATGTCTTCGATCTGCT
66 GTCAAATCTGCTATGTCTTCGATCTGCT
91907505 CTCCGTCGAA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (94 bp):
TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAG
GTCAAATCTGCTATGTCTTCGATCTGCTG
Found at i:91907679 original size:88 final size:82
Alignment explanation
Indices: 91907556--91907911 Score: 323
Period size: 78 Copynumber: 4.4 Consensus size: 82
91907546 GTTCTCTGAC
* * * *
91907556 AATACAGAGATGTCAAATCATCTTAGATTTCCTTCAGCATAAACATGTGAAAGCCAAATCTGCTA
1 AATACAGAGATGCCAAATCATCTTGGATCTGCTTCA-CAT--A-A-GTG-AAGCCAAATCTGCTA
*
91907621 TGTCTTCAATCTGCTCCCCGTCT
60 TGTCTTCGATCTGCTCCCCGTCT
* *
91907644 AATACAGAGATGCCAAATCATCTTGGATCTGCTTCA-ATGAAG-G--TCC-AATCTGTTATGTCT
1 AATACAGAGATGCCAAATCATCTTGGATCTGCTTCACAT-AAGTGAAGCCAAATCTGCTATGTCT
*
91907704 TCGTTCTGCTCCCCGTCT
65 TCGATCTGCTCCCCGTCT
* * * *
91907722 AATACAGAGATGCCAAATCGTCTTGGATCTGCTT--C--AA-TGAAGGTCAGATCTGCTGTGTCT
1 AATACAGAGATGCCAAATCATCTTGGATCTGCTTCACATAAGTGAA-GCCAAATCTGCTATGTCT
91907782 TCGATCTGCTCCCCGTCT
65 TCGATCTGCTCCCCGTCT
* *
91907800 AATACAGAGATGCCAAATCATCTTGGATCTGCTT--C--AA-TGAAGGTCATATCTGCTATGTCT
1 AATACAGAGATGCCAAATCATCTTGGATCTGCTTCACATAAGTGAA-GCCAAATCTGCTATGTCT
***
91907860 TCGATCTGCTCCTTTTC-
65 TCGATCTGCTCCCCGTCT
** *
91907877 AACGCA-AGGATGCCAAATCATCTTGGATCTACTTC
1 AATACAGA-GATGCCAAATCATCTTGGATCTGCTTC
91907912 GATGTGAAGA
Statistics
Matches: 235, Mismatches: 25, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
74 3 0.01
76 1 0.00
77 30 0.13
78 161 0.69
79 2 0.01
82 1 0.00
83 1 0.00
84 1 0.00
85 1 0.00
86 2 0.01
88 32 0.14
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (82 bp):
AATACAGAGATGCCAAATCATCTTGGATCTGCTTCACATAAGTGAAGCCAAATCTGCTATGTCTT
CGATCTGCTCCCCGTCT
Found at i:91907746 original size:78 final size:78
Alignment explanation
Indices: 91907613--91907911 Score: 451
Period size: 78 Copynumber: 3.8 Consensus size: 78
91907603 TGAAAGCCAA
*
91907613 ATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
91907678 CAATGAAGGTCCA-
66 CAATGAAGGT-CAG
* * *
91907691 ATCTGTTATGTCTTCGTTCTGCTCCCCGTCTAATACAGAGATGCCAAATCGTCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
91907756 CAATGAAGGTCAG
66 CAATGAAGGTCAG
*
91907769 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
91907834 CAATGAAGGTCAT
66 CAATGAAGGTCAG
*** ** *
91907847 ATCTGCTATGTCTTCGATCTGCTCCTTTTC-AACGCA-AGGATGCCAAATCATCTTGGATCTACT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGA-GATGCCAAATCATCTTGGATCTGCT
91907910 TC
65 TC
91907912 GATGTGAAGA
Statistics
Matches: 203, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
76 1 0.00
77 32 0.16
78 170 0.84
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (78 bp):
ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
CAATGAAGGTCAG
Found at i:91916586 original size:22 final size:21
Alignment explanation
Indices: 91916551--91916677 Score: 60
Period size: 19 Copynumber: 6.5 Consensus size: 21
91916541 AAAAGGTATC
* * *
91916551 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAGAT
91916572 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
91916595 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
91916614 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
**
91916632 T--GTATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
91916649 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
91916668 TGCAAATCAT
1 TACAAATCAT
91916678 TGAAGATCAT
Statistics
Matches: 92, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
17 15 0.16
18 15 0.16
19 35 0.38
21 3 0.03
22 15 0.16
23 9 0.10
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:91916611 original size:19 final size:19
Alignment explanation
Indices: 91916587--91916677 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
91916577 AATCATATCT
91916587 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
91916606 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
91916624 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
91916641 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
91916660 TCTAAGATTGCAAATCAT
1 TCTAAGATTGCATATCAT
91916678 TGAAGATCAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:91916643 original size:35 final size:37
Alignment explanation
Indices: 91916580--91916669 Score: 143
Period size: 35 Copynumber: 2.5 Consensus size: 37
91916570 ATTACAAAAT
91916580 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
91916616 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
91916651 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
91916670 CAAATCATTG
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
35 22 0.43
36 19 0.37
37 10 0.20
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:91916656 original size:14 final size:15
Alignment explanation
Indices: 91916601--91916656 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
91916591 AGATTGCATA
91916601 TCATATCTAAGATTG
1 TCATATCTAAGATTG
91916616 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
91916634 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
91916651 -CATATC
1 TCATATC
91916657 ATATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:91920478 original size:18 final size:18
Alignment explanation
Indices: 91920457--91920494 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
91920447 TCTCTAAGTT
91920457 ATTTTCAGTTTTTTCACC
1 ATTTTCAGTTTTTTCACC
* *
91920475 ATTTTTAGTTTTTTCTCC
1 ATTTTCAGTTTTTTCACC
91920493 AT
1 AT
91920495 AACTTTAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.18, G:0.05, T:0.61
Consensus pattern (18 bp):
ATTTTCAGTTTTTTCACC
Found at i:91925885 original size:18 final size:17
Alignment explanation
Indices: 91925858--91925894 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
91925848 ACCATAACCA
91925858 ACATTCAACTCATCATAG
1 ACATTCAACTCATCA-AG
*
91925876 ACATTTAACTCATCAAG
1 ACATTCAACTCATCAAG
91925893 AC
1 AC
91925895 TTTGATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.41, C:0.27, G:0.05, T:0.27
Consensus pattern (17 bp):
ACATTCAACTCATCAAG
Found at i:91930778 original size:54 final size:53
Alignment explanation
Indices: 91930720--91930825 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 53
91930710 TATTTTTCAA
* *
91930720 TTTGTAAGACACAATGATT-TCGGTCTTGAACAAAATAGTTTAATTATGTTTTTT
1 TTTGTAAGACAAAAT-ATTATCAGTCTTGAACAAAATAGTTTAATTAT-TTTTTT
91930774 TTTGTAAGACAAAATATTATCAGTCTTGAACAAAATAGTTTAATTATTTTTT
1 TTTGTAAGACAAAATATTATCAGTCTTGAACAAAATAGTTTAATTATTTTTT
91930826 AGTATTGAGA
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
53 8 0.16
54 41 0.84
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.44
Consensus pattern (53 bp):
TTTGTAAGACAAAATATTATCAGTCTTGAACAAAATAGTTTAATTATTTTTTT
Found at i:91931917 original size:20 final size:21
Alignment explanation
Indices: 91931894--91931933 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
91931884 AATTTGGTCT
91931894 TAGAAAGATAA-ATTTTTTTA
1 TAGAAAGATAAGATTTTTTTA
**
91931914 TAGAGGGATAAGATTTTTTT
1 TAGAAAGATAAGATTTTTTT
91931934 TTGAAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (21 bp):
TAGAAAGATAAGATTTTTTTA
Found at i:91933475 original size:30 final size:30
Alignment explanation
Indices: 91933430--91933493 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
91933420 ACGTAGAAAT
* *
91933430 CAACCTATGGTGGAGCCCGACCCAAAGGAC
1 CAACATATGGCGGAGCCCGACCCAAAGGAC
*
91933460 CAACATATGGCGGAGCCCGACCCAGAGGAC
1 CAACATATGGCGGAGCCCGACCCAAAGGAC
91933490 CAAC
1 CAAC
91933494 CTCTGAACAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.34, G:0.27, T:0.08
Consensus pattern (30 bp):
CAACATATGGCGGAGCCCGACCCAAAGGAC
Found at i:91935276 original size:20 final size:22
Alignment explanation
Indices: 91935253--91935295 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
91935243 ATTTCCTATG
*
91935253 TTGGCCCGTTT-TCTC-CTTTT
1 TTGGCCCATTTCTCTCTCTTTT
91935273 TTGGCCCATTTCTCTCTCTTTT
1 TTGGCCCATTTCTCTCTCTTTT
91935295 T
1 T
91935296 ACTCTCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 4 0.20
22 6 0.30
ACGTcount: A:0.02, C:0.30, G:0.12, T:0.56
Consensus pattern (22 bp):
TTGGCCCATTTCTCTCTCTTTT
Found at i:91949809 original size:14 final size:15
Alignment explanation
Indices: 91949777--91949810 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
91949767 AGTCACATAA
*
91949777 AAAAATAAAATATTT
1 AAAAATAAAATATTC
91949792 AAAAATAAAA-ATTC
1 AAAAATAAAATATTC
91949806 AAAAA
1 AAAAA
91949811 ATTATGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAAATAAAATATTC
Found at i:91949960 original size:32 final size:31
Alignment explanation
Indices: 91949924--91949985 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
91949914 AATTAATTAG
*
91949924 ACTCTTTTTCAAAA-AGTTAATAGTCAAATTTC
1 ACTCTTTTT-AAAAGA-TTAAGAGTCAAATTTC
*
91949956 ACTCTTTTTAAAAGATTAAGAGTTAAATTT
1 ACTCTTTTTAAAAGATTAAGAGTCAAATTT
91949986 AACTAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (31 bp):
ACTCTTTTTAAAAGATTAAGAGTCAAATTTC
Found at i:91950372 original size:7 final size:7
Alignment explanation
Indices: 91950353--91950413 Score: 56
Period size: 7 Copynumber: 9.1 Consensus size: 7
91950343 TATATGATAT
*
91950353 AATTTAA
1 AATTAAA
91950360 AA-TAAA
1 AATTAAA
91950366 AATTAAA
1 AATTAAA
*
91950373 AAAT-AA
1 AATTAAA
** *
91950379 CTTTCAA
1 AATTAAA
91950386 AATTAAA
1 AATTAAA
91950393 AATTAAA
1 AATTAAA
91950400 AATTAAA
1 AATTAAA
91950407 AA-TAAA
1 AATTAAA
91950413 A
1 A
91950414 TAAAATAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
6 13 0.30
7 31 0.70
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (7 bp):
AATTAAA
Found at i:91950375 original size:14 final size:14
Alignment explanation
Indices: 91950358--91950425 Score: 57
Period size: 14 Copynumber: 4.8 Consensus size: 14
91950348 GATATAATTT
91950358 AAAATAAAAATTAA
1 AAAATAAAAATTAA
** *
91950372 AAAAT-AACTTTCA
1 AAAATAAAAATTAA
*
91950385 AAATTAAAAATTAA
1 AAAATAAAAATTAA
* *
91950399 AAATTAAAAATAAAA
1 AAAATAAAAAT-TAA
91950414 TAAAATAAAAAT
1 -AAAATAAAAAT
91950426 AGAATCAACA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
13 9 0.21
14 21 0.50
15 2 0.05
16 10 0.24
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (14 bp):
AAAATAAAAATTAA
Found at i:91950402 original size:26 final size:24
Alignment explanation
Indices: 91950351--91950401 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 24
91950341 TTTATATGAT
91950351 ATAATTTAAAATAAAAATTAAAAA
1 ATAATTTAAAATAAAAATTAAAAA
91950375 ATAACTTTCAAAATTAAAAATTAAAAA
1 ATAA-TTT-AAAA-TAAAAATTAAAAA
91950402 TTAAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 4 0.17
25 3 0.12
26 4 0.17
27 13 0.54
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (24 bp):
ATAATTTAAAATAAAAATTAAAAA
Found at i:91951396 original size:73 final size:73
Alignment explanation
Indices: 91951277--91951432 Score: 303
Period size: 73 Copynumber: 2.1 Consensus size: 73
91951267 GGAAGTCACT
91951277 TTGCCCTTCCATGGGCAAGCTATGATGTAAACACAGCTACTTGGTAGACTTAAGGTTTAATTTAG
1 TTGCCCTTCCATGGGCAAGCTATGATGTAAACACAGCTACTTGGTAGACTTAAGGTTTAATTTAG
91951342 TATTACAA
66 TATTACAA
91951350 TTGCCCTTCCATGGGCAAGCTATGATGTAAACACAGCTACTTGGTAGACTTAAGGTTTAATTTAG
1 TTGCCCTTCCATGGGCAAGCTATGATGTAAACACAGCTACTTGGTAGACTTAAGGTTTAATTTAG
91951415 TATTACAA
66 TATTACAA
*
91951423 TTGCTCTTCC
1 TTGCCCTTCC
91951433 CGTTCGGAGA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 82 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (73 bp):
TTGCCCTTCCATGGGCAAGCTATGATGTAAACACAGCTACTTGGTAGACTTAAGGTTTAATTTAG
TATTACAA
Found at i:91953651 original size:45 final size:45
Alignment explanation
Indices: 91953583--91953706 Score: 203
Period size: 45 Copynumber: 2.8 Consensus size: 45
91953573 TGGTTGAAAT
* * *
91953583 ACGAGTAAGACCATAGCTAAAAGACGCTATGGCATCACGAATCAA
1 ACGAGTAAGACCATAGATGAAAGACACTATGGCATCACGAATCAA
*
91953628 ACGAGTAAGACCATATATGAAAGACACTATGGCATCACGAATCAA
1 ACGAGTAAGACCATAGATGAAAGACACTATGGCATCACGAATCAA
*
91953673 ACGAGTAAGACCATAGATGAAAGACATTATGGCA
1 ACGAGTAAGACCATAGATGAAAGACACTATGGCA
91953707 CTATACCGGA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.17
Consensus pattern (45 bp):
ACGAGTAAGACCATAGATGAAAGACACTATGGCATCACGAATCAA
Found at i:91953727 original size:45 final size:45
Alignment explanation
Indices: 91953678--91953884 Score: 240
Period size: 45 Copynumber: 4.6 Consensus size: 45
91953668 ATCAAACGAG
* **
91953678 TAAGACCATAGATGAAAGACATTATGGCACTATACCGGAAATGAA
1 TAAGACCATAGTTGAAAGACATTATGGCACTATACCAAAAATGAA
* * **
91953723 TAAGACCATAGTCGAAAGGCACAATGGCACTATACCAAAAATGAA
1 TAAGACCATAGTTGAAAGACATTATGGCACTATACCAAAAATGAA
* * *
91953768 TAAGACCATAGTTGAAAGACACTATAGCACTATACC-AGAATCGAA
1 TAAGACCATAGTTGAAAGACATTATGGCACTATACCAAAAAT-GAA
* * *
91953813 TAAGACCATAGTTGAAAGGA-ATTATGACAATATGA-CGAAAATGAA
1 TAAGACCATAGTTGAAA-GACATTATGGCACTAT-ACCAAAAATGAA
*
91953858 TAAGATCATAGTTGAAAGACATTATGG
1 TAAGACCATAGTTGAAAGACATTATGG
91953885 TATCATATCG
Statistics
Matches: 138, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
44 6 0.04
45 125 0.91
46 7 0.05
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.21
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACATTATGGCACTATACCAAAAATGAA
Found at i:91953727 original size:90 final size:90
Alignment explanation
Indices: 91953633--91953830 Score: 233
Period size: 90 Copynumber: 2.2 Consensus size: 90
91953623 ATCAAACGAG
* * *
91953633 TAAGACCATA-TATGAAAGACACTATGGCA-T-CACGAATCAAACGAGTAAGACCATAGATGAAA
1 TAAGACCATAGT-TGAAAGACACAATGGCACTACACCAA--AAACGAATAAGACCATAGATGAAA
* * *
91953695 GACATTATGGCACTATACCGGAAAT-GAA
63 GACACTATAGCACTATACCAG-AATCGAA
* * * * *
91953723 TAAGACCATAGTCGAAAGGCACAATGGCACTATACCAAAAATGAATAAGACCATAGTTGAAAGAC
1 TAAGACCATAGTTGAAAGACACAATGGCACTACACCAAAAACGAATAAGACCATAGATGAAAGAC
91953788 ACTATAGCACTATACCAGAATCGAA
66 ACTATAGCACTATACCAGAATCGAA
91953813 TAAGACCATAGTTGAAAG
1 TAAGACCATAGTTGAAAG
91953831 GAATTATGAC
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
89 3 0.03
90 83 0.90
91 2 0.02
92 4 0.04
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.19
Consensus pattern (90 bp):
TAAGACCATAGTTGAAAGACACAATGGCACTACACCAAAAACGAATAAGACCATAGATGAAAGAC
ACTATAGCACTATACCAGAATCGAA
Found at i:91960788 original size:26 final size:24
Alignment explanation
Indices: 91960757--91960809 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
91960747 AAAAGAGATG
*
91960757 AAATAAAATTAAAATAAAGAATAAAA
1 AAATAAAAGTAAAA-AAA-AATAAAA
* *
91960783 AAATAACAGTAAAAGAAAATAAAA
1 AAATAAAAGTAAAAAAAAATAAAA
91960807 AAA
1 AAA
91960810 GTAGCGGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 10 0.42
25 2 0.08
26 12 0.50
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (24 bp):
AAATAAAAGTAAAAAAAAATAAAA
Found at i:91961757 original size:254 final size:255
Alignment explanation
Indices: 91961334--91961796 Score: 802
Period size: 254 Copynumber: 1.8 Consensus size: 255
91961324 TGCTCGACTG
*
91961334 TGTGTGATGTTGTTTGTTTCTCCCACGCCCGTGTTAGGTCCTCCACGCCCATGTTCCTGGTTTAA
1 TGTGTGATGTTGTTCGTTTCTCCCACGCCCGTGTTAGGTCCTCCACGCCCATGTTCCTGGTTTAA
****
91961399 GCTTATGGGTTGATGTTCAAGTCAGTGTCGCACACGGCCTGAGGACACGTTTGTGTTCCTAGGCC
66 GCTTATGGGTTGATGTTCAAGTCAGTGTCGCACACGGCCTGAGGACACACCCGTGTTCCTAGGCC
*
91961464 GTATAACCCACACGACCACATCGCATGGCCATGTGGTGATCCCTTCATTTCTCCCACGCCCGTGT
131 GTATAACCCACACGACCACATCGCATGGCCATATGGTGATCCCTTCATTTCTCCCACGCCCGTGT
91961529 -CCCCCCAACACGCTAGTGTGTCCCGGCCGTGTGGTTCACACGGTCATATCGCACGACCA
196 CCCCCCCAACACGCTAGTGTGTCCCGGCCGTGTGGTTCACACGGTCATATCGCACGACCA
*
91961588 TGTGTGATGTTGTTCGTTTCTCCCACGCCCGTGTTAGGTCCTCCACGCCCGTGTTCCTGGTTTAA
1 TGTGTGATGTTGTTCGTTTCTCCCACGCCCGTGTTAGGTCCTCCACGCCCATGTTCCTGGTTTAA
*
91961653 GCTTGTGGGTTGATGTTCAAGTCAGTGTCGCACACGGCCTGAGGACACACCCGTGTTCCTAGGCC
66 GCTTATGGGTTGATGTTCAAGTCAGTGTCGCACACGGCCTGAGGACACACCCGTGTTCCTAGGCC
* * * * *
91961718 GTATGACCCATACGGCCACATCGCATGGCCATATGGTGATCCCTTCGTTTCTCCCACGCCTGTGT
131 GTATAACCCACACGACCACATCGCATGGCCATATGGTGATCCCTTCATTTCTCCCACGCCCGTGT
91961783 CCCCCCCAACACGC
196 CCCCCCCAACACGC
91961797 CTGTGTCCAT
Statistics
Matches: 195, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
254 182 0.93
255 13 0.07
ACGTcount: A:0.16, C:0.32, G:0.24, T:0.28
Consensus pattern (255 bp):
TGTGTGATGTTGTTCGTTTCTCCCACGCCCGTGTTAGGTCCTCCACGCCCATGTTCCTGGTTTAA
GCTTATGGGTTGATGTTCAAGTCAGTGTCGCACACGGCCTGAGGACACACCCGTGTTCCTAGGCC
GTATAACCCACACGACCACATCGCATGGCCATATGGTGATCCCTTCATTTCTCCCACGCCCGTGT
CCCCCCCAACACGCTAGTGTGTCCCGGCCGTGTGGTTCACACGGTCATATCGCACGACCA
Found at i:91967970 original size:21 final size:21
Alignment explanation
Indices: 91967932--91967971 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
91967922 TTACTCAAGG
*
91967932 AAAGCCGATTGATCCATCACA
1 AAAGCCGATTCATCCATCACA
91967953 AAAGCCGGATTCAT-CATCA
1 AAAGCC-GATTCATCCATCA
91967972 AGACTGAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.38, C:0.28, G:0.15, T:0.20
Consensus pattern (21 bp):
AAAGCCGATTCATCCATCACA
Found at i:91980631 original size:14 final size:15
Alignment explanation
Indices: 91980609--91980638 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
91980599 GAATATTAAA
91980609 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
91980624 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
91980638 A
1 A
91980639 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:91982444 original size:37 final size:37
Alignment explanation
Indices: 91982380--91982453 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 37
91982370 TTACAAGCCA
91982380 AAATCATTATAAGCCACATCTTATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTTATGGCTA-ATCACAAC
91982417 AAATCATTATAAGCCA-ATACATT-TGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TTATGGCTAATCACAAC
91982454 GACATCGATC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.82
38 2 0.06
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTTATGGCTAATCACAAC
Found at i:92002657 original size:13 final size:12
Alignment explanation
Indices: 92002613--92002659 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
92002603 TAAAAAGTAC
92002613 TTAAAAAT-AAA
1 TTAAAAATAAAA
*
92002624 -TAAATATAAAA
1 TTAAAAATAAAA
*
92002635 TTGAAAATAAAA
1 TTAAAAATAAAA
92002647 TTAATAAATAAAA
1 TTAA-AAATAAAA
92002660 AGTTTTTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 6 0.21
11 3 0.10
12 12 0.41
13 8 0.28
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (12 bp):
TTAAAAATAAAA
Found at i:92009761 original size:40 final size:40
Alignment explanation
Indices: 92009678--92009900 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
92009668 TTGAATGCTG
* * * * *
92009678 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
92009718 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
92009758 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
92009798 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
92009838 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
92009877 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
92009901 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.21
40 114 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:92009815 original size:80 final size:79
Alignment explanation
Indices: 92009678--92009902 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
92009668 TTGAATGCTG
* * * * * *
92009678 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
92009741 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
92009758 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
92009823 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * *
92009838 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
92009902 G
65 G
92009903 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 81 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:92009920 original size:79 final size:80
Alignment explanation
Indices: 92009753--92009935 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
92009743 GTGCGAGATA
** *
92009753 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
92009818 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
92009833 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
92009897 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
92009912 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
92009936 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:92009920 original size:119 final size:120
Alignment explanation
Indices: 92009678--92009935 Score: 281
Period size: 119 Copynumber: 2.2 Consensus size: 120
92009668 TTGAATGCTG
* * * * *
92009678 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* ** ** *
92009743 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
92009798 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * * *
92009860 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
92009917 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
92009936 TACGTGATTT
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
118 15 0.13
119 51 0.44
120 39 0.34
121 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:92024129 original size:46 final size:49
Alignment explanation
Indices: 92023967--92024231 Score: 248
Period size: 48 Copynumber: 5.5 Consensus size: 49
92023957 TCACCGATCT
* * *
92023967 CCATGTCCTAGACATGGTCTTACACTGGCAACATATATC--T-CACTGATG
1 CCATGTCCCAGACATGGTCTTACATTGGC-ACATACATCATTGCA-TGATG
* * * *
92024015 CCATGGTGCCAAACATGGTCTTACCACTGGCACATACATTCATTG-TTGATG
1 CCAT-GTCCCAGACATGGTCTTA-CATTGGCACATACA-TCATTGCATGATG
*
92024066 CCATGTTCCCAGACATGGTCTTACATTAGCA-ATACATCATTGCAT-ATG
1 CCATG-TCCCAGACATGGTCTTACATTGGCACATACATCATTGCATGATG
*
92024114 CC-TGTCCCAGTCATGGTCTTACATTGGCACATACAT-A-T-CACTGATG
1 CCATGTCCCAGACATGGTCTTACATTGGCACATACATCATTGCA-TGATG
* * * * *
92024160 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCA-T-CACCGTTG
1 CCATGTCCCAGACATGGTCTTACATTGGCACATACATCATTGCA-TGATG
92024208 CCATGTCCCAGACATGGTCTTACA
1 CCATGTCCCAGACATGGTCTTACA
92024232 CTGCATACAT
Statistics
Matches: 186, Mismatches: 18, Indels: 26
0.81 0.08 0.11
Matches are distributed among these distances:
44 2 0.01
45 2 0.01
46 29 0.16
47 38 0.20
48 47 0.25
49 27 0.15
50 16 0.09
51 24 0.13
52 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (49 bp):
CCATGTCCCAGACATGGTCTTACATTGGCACATACATCATTGCATGATG
Found at i:92024219 original size:48 final size:48
Alignment explanation
Indices: 92023919--92024279 Score: 299
Period size: 47 Copynumber: 7.5 Consensus size: 48
92023909 GTAACCAATG
* *
92023919 CATGTCCCA-ACATGGTTCTTACA-T-GAATCCACATATCATCACCGATCTC
1 CATGTCCCAGACATGG-TCTTACACTGGCA--CACATATCATCACCGAT-GC
* * *
92023968 CATGTCCTAGACATGGTCTTACACTGGCAACATATATC-TCACTGATGC
1 CATGTCCCAGACATGGTCTTACACTGGC-ACACATATCATCACCGATGC
* * ****
92024016 CATGGTGCCAAACATGGTCTTACCACTGGCACATACAT-TCATTGTTGATGC
1 CAT-GTCCCAGACATGGTCTTA-CACTGGCAC--ACATATCATCACCGATGC
* * * * ** **
92024067 CATGTTCCCAGACATGGTCTTACATTAGCA-ATACATCATTGCATATGC
1 CATG-TCCCAGACATGGTCTTACACTGGCACACATATCATCACCGATGC
* * * * *
92024115 C-TGTCCCAGTCATGGTCTTACATTGGCACATACAT-ATCACTGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCGATGC
*
92024161 CATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCGTTGC
1 CATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCGATGC
* *
92024209 CATGTCCCAGACATGGTCTTACACT-GCATACATATCATCGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCGATGC
* * *
92024256 TATGTTCTAGACATGGTCTTACAC
1 CATGTCCCAGACATGGTCTTACAC
92024280 AGGAACCTAA
Statistics
Matches: 259, Mismatches: 39, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
46 31 0.12
47 80 0.31
48 49 0.19
49 39 0.15
50 30 0.12
51 29 0.11
52 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCGATGC
Found at i:92026768 original size:23 final size:23
Alignment explanation
Indices: 92026741--92026787 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
92026731 GCTTACGTGG
*
92026741 TTACTTTCTTTTGTTTTATAGAT
1 TTACTTTCCTTTGTTTTATAGAT
92026764 TTACTTTCCTTTGTTTTATAGAT
1 TTACTTTCCTTTGTTTTATAGAT
92026787 T
1 T
92026788 ATCGGAAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.11, G:0.09, T:0.64
Consensus pattern (23 bp):
TTACTTTCCTTTGTTTTATAGAT
Found at i:92033380 original size:40 final size:40
Alignment explanation
Indices: 92033317--92033575 Score: 402
Period size: 40 Copynumber: 6.6 Consensus size: 40
92033307 ATTCGGATTG
92033317 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92033356 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92033395 ATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
92033435 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92033475 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92033515 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
92033555 ATATCC-GGCTAA-CCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
92033576 TACTTGGTTT
Statistics
Matches: 208, Mismatches: 9, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
38 8 0.04
39 58 0.28
40 142 0.68
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:92041519 original size:40 final size:40
Alignment explanation
Indices: 92041457--92041691 Score: 348
Period size: 40 Copynumber: 5.9 Consensus size: 40
92041447 TATTCGATTG
**
92041457 ATAACCGGGCTAAG-CTTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
92041496 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
92041536 ATAACCGGGCCAAGTCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92041576 ATAACCGGG-TCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
92041616 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTAAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92041656 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
92041692 AGCTATATTC
Statistics
Matches: 177, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.07
40 164 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:92052601 original size:26 final size:25
Alignment explanation
Indices: 92052539--92052602 Score: 60
Period size: 27 Copynumber: 2.4 Consensus size: 25
92052529 CTTTTATCTT
*
92052539 TATTTATCTTTTTAAATTACTTTTC
1 TATTTATCTTTTTAAATAACTTTTC
92052564 -ATTTTATTTCTTTTT-AATAACTATTTC
1 TA-TTTA--TCTTTTTAAATAACT-TTTC
92052591 TATTTCATCTTT
1 TATTT-ATCTTT
92052603 AGGTTTTACA
Statistics
Matches: 32, Mismatches: 1, Indels: 11
0.73 0.02 0.25
Matches are distributed among these distances:
24 1 0.03
25 4 0.12
26 11 0.34
27 14 0.44
28 2 0.06
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.64
Consensus pattern (25 bp):
TATTTATCTTTTTAAATAACTTTTC
Found at i:92054661 original size:13 final size:13
Alignment explanation
Indices: 92054643--92054667 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92054633 AGCCACCCCA
92054643 CACGGGCGTGTCG
1 CACGGGCGTGTCG
92054656 CACGGGCGTGTC
1 CACGGGCGTGTC
92054668 CCTGTCGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.44, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTCG
Found at i:92060865 original size:47 final size:47
Alignment explanation
Indices: 92060814--92061093 Score: 250
Period size: 47 Copynumber: 5.9 Consensus size: 47
92060804 GCCACATTAT
*
92060814 GAGAGCCAGTGTAAGACCATGTCTGGGA-TTGGCATCGGCATTGAGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
*
92060860 CGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TATGAGA
1 -GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGA
* * * * ** *
92060906 -TGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGGATA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
* * * **
92060952 CTTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCACCGGCCTTGATTTT
1 ---GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA--GA
* * * *
92061004 GATAGTCAGTGTAAGACCATGTCTGGGATATGGCATCGAC-TTGATG-
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GA
* *
92061050 GATGAGCCAGCGTAAGACCATGTTTGGGACATGGCATCGGCATT
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
92061094 ATACACTATG
Statistics
Matches: 187, Mismatches: 33, Indels: 25
0.76 0.13 0.10
Matches are distributed among these distances:
44 11 0.06
45 14 0.07
46 37 0.20
47 49 0.26
48 6 0.03
49 34 0.18
50 35 0.19
52 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
Found at i:92061018 original size:99 final size:91
Alignment explanation
Indices: 92060820--92061041 Score: 275
Period size: 99 Copynumber: 2.3 Consensus size: 91
92060810 TTATGAGAGC
* **
92060820 CAGTGTAAGACCATGTCTGGGATTGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTG
1 CAGTGTAAGACCATGTCTGGGAATGGCATCGGCACGGAGACGAGAGCTAGTGTAAGACATGTCTG
*
92060885 GGACATGCATCGGCTATGAGATGTGT
66 GGACATGCACCGGCTATGAGATGTGT
* *
92060911 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGGATACTTGAGAGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTGGGA-ATGGCATCGGCACGGAGAC--GAGAGCTAGTGTAAGA-CATG
**
92060976 TCTGGGACATGGCACCGGCCT-TGATTTTGATAGT
62 TCTGGGACAT-GCACCGG-CTATGA-GATG-T-GT
92061010 CAGTGTAAGACCATGTCTGGGATATGGCATCG
1 CAGTGTAAGACCATGTCTGGGA-ATGGCATCG
92061042 ACTTGATGGA
Statistics
Matches: 112, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
91 21 0.19
92 15 0.13
94 16 0.14
95 14 0.12
96 9 0.08
97 4 0.04
98 1 0.01
99 32 0.29
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (91 bp):
CAGTGTAAGACCATGTCTGGGAATGGCATCGGCACGGAGACGAGAGCTAGTGTAAGACATGTCTG
GGACATGCACCGGCTATGAGATGTGT
Found at i:92064153 original size:28 final size:29
Alignment explanation
Indices: 92064113--92064168 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 29
92064103 AGACAGGCTA
92064113 GGACACGGGCGTGT-T-ATGGCCGTGTGAG
1 GGACACGGGCGTGTGTCA-GGCCGTGTGAG
92064141 GGACACGGGCGTGTGTCAGGCCGTGTGA
1 GGACACGGGCGTGTGTCAGGCCGTGTGA
92064169 AAACCCCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 14 0.54
29 11 0.42
30 1 0.04
ACGTcount: A:0.14, C:0.20, G:0.46, T:0.20
Consensus pattern (29 bp):
GGACACGGGCGTGTGTCAGGCCGTGTGAG
Found at i:92065241 original size:28 final size:28
Alignment explanation
Indices: 92065200--92065253 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
92065190 TACTTCTTTA
* *
92065200 AGAAAATCCTATTCGACATGGTCGTACG
1 AGAAAATCCCATTCGACACGGTCGTACG
92065228 AGAAAATCCCATTCGACACGGTCGTA
1 AGAAAATCCCATTCGACACGGTCGTA
92065254 GGCTTTGCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (28 bp):
AGAAAATCCCATTCGACACGGTCGTACG
Found at i:92065497 original size:21 final size:21
Alignment explanation
Indices: 92065472--92065536 Score: 121
Period size: 21 Copynumber: 3.1 Consensus size: 21
92065462 CTGCATAAGC
92065472 TGATAGGGCGAAAGTTAGATA
1 TGATAGGGCGAAAGTTAGATA
92065493 TGATAGGGCGAAAGTTAGATA
1 TGATAGGGCGAAAGTTAGATA
*
92065514 TGATAGCGCGAAAGTTAGATA
1 TGATAGGGCGAAAGTTAGATA
92065535 TG
1 TG
92065537 TCTTTGGGAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.37, C:0.06, G:0.32, T:0.25
Consensus pattern (21 bp):
TGATAGGGCGAAAGTTAGATA
Found at i:92071527 original size:47 final size:46
Alignment explanation
Indices: 92071421--92071547 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 46
92071411 TATATCTCGA
*
92071421 GGCCGATGCATGTCCCAGACATGTCTTACACTAACACTCGTCTCATT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAACACTCG-CTAATT
* * ** *
92071468 -GCCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCG-TAATGT
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAACACTCGCTAAT-T
*
92071515 GGCCGATGCATGTCCCGGACATGTCTTACACTA
1 GGCCGATGCATGTCCCAGACATGTCTTACACTA
92071548 GCTCACACAA
Statistics
Matches: 66, Mismatches: 10, Indels: 9
0.78 0.12 0.11
Matches are distributed among these distances:
46 19 0.29
47 26 0.39
48 21 0.32
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAACACTCGCTAATT
Found at i:92078944 original size:46 final size:47
Alignment explanation
Indices: 92078861--92079026 Score: 157
Period size: 46 Copynumber: 3.6 Consensus size: 47
92078851 TATCCGTGCC
* *
92078861 GATGCCATGTCCCA-AGCATGGTCTTACA-TTG-AC-ACATCTCGTAGCC
1 GATG-CATGTCCCAGA-CAT-GTCTTACACTAGCACTACATCTCGTAGCT
*
92078907 GATGCATGTCCCAGACATGTCTTACACTAGC-TTACATCTCG-AGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTACATCTCGTA-GCT
* * * * *
92078953 GATGCATGTCCCGGACATGTCTCACACTAGCACT-CGTCTCATTGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTACATCTCGTAGCT
92078999 GATGCCATGTCCCAGACATGGTCTTACA
1 GATG-CATGTCCCAGACAT-GTCTTACA
92079027 TTGGCTCTTG
Statistics
Matches: 100, Mismatches: 11, Indels: 16
0.79 0.09 0.13
Matches are distributed among these distances:
44 8 0.08
45 15 0.15
46 56 0.56
47 14 0.14
48 7 0.07
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTACATCTCGTAGCT
Found at i:92080594 original size:38 final size:38
Alignment explanation
Indices: 92080543--92080623 Score: 146
Period size: 38 Copynumber: 2.2 Consensus size: 38
92080533 TTTTTAATTT
*
92080543 TCCCTTTTTATTCTTTTATTTACCAAATGACTAAAATG
1 TCCCTTTTTATTCTTTTATTTACCAAATAACTAAAATG
92080581 TCCCTTTTTATTCTTTTATTTACCAAATAACTAAAATG
1 TCCCTTTTTATTCTTTTATTTACCAAATAACTAAAATG
92080619 -CCCTT
1 TCCCTT
92080624 AAGGCCTTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 5 0.12
38 37 0.88
ACGTcount: A:0.28, C:0.21, G:0.04, T:0.47
Consensus pattern (38 bp):
TCCCTTTTTATTCTTTTATTTACCAAATAACTAAAATG
Found at i:92081756 original size:29 final size:29
Alignment explanation
Indices: 92081724--92081847 Score: 169
Period size: 29 Copynumber: 4.3 Consensus size: 29
92081714 TCGACTAATA
*
92081724 AAAAAGGATAGCTTCGACTATCAATTATG
1 AAAAAGGATAGCTTCGGCTATCAATTATG
92081753 AAAAAGGATAGCTTCGGCTATCAATTATG
1 AAAAAGGATAGCTTCGGCTATCAATTATG
* * *
92081782 AAAAAGGATAACTTTGGCTTTCAATTATG
1 AAAAAGGATAGCTTCGGCTATCAATTATG
* * *
92081811 -AAAATGATAGCTTCGGCTATCGATTATT
1 AAAAAGGATAGCTTCGGCTATCAATTATG
*
92081839 AAAAGGGAT
1 AAAAAGGAT
92081848 GGTGACGACC
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 22 0.27
29 60 0.73
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (29 bp):
AAAAAGGATAGCTTCGGCTATCAATTATG
Found at i:92081881 original size:29 final size:29
Alignment explanation
Indices: 92081829--92081913 Score: 118
Period size: 29 Copynumber: 2.9 Consensus size: 29
92081819 AGCTTCGGCT
* *
92081829 ATCGATTATTAAAAGGGATGGTGACGACC
1 ATCGAATATGAAAAGGGATGGTGACGACC
*
92081858 ATC-AACTATGAAAAGGGATGGTGATGACC
1 ATCGAA-TATGAAAAGGGATGGTGACGACC
*
92081887 ATCGAATATGAAAAGGGATGTTGACGA
1 ATCGAATATGAAAAGGGATGGTGACGA
92081914 AAAAAGATAG
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
28 1 0.02
29 46 0.94
30 2 0.04
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.22
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATGGTGACGACC
Found at i:92081999 original size:29 final size:29
Alignment explanation
Indices: 92081967--92082045 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
92081957 AACCATTGAA
*
92081967 TATGAAAAGGGATA-TCTTCGGCTATCGAT
1 TATGAAAAGGGATAGT-TTCGGCTATCAAT
*
92081996 TATGAAAAGGGATAGTTTTGGCTATCAAT
1 TATGAAAAGGGATAGTTTCGGCTATCAAT
* *
92082025 TAAAGAAAAGGGATGGTTTCG
1 T-ATGAAAAGGGATAGTTTCG
92082046 ACCATTGACT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 26 0.60
30 17 0.40
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (29 bp):
TATGAAAAGGGATAGTTTCGGCTATCAAT
Found at i:92082000 original size:103 final size:103
Alignment explanation
Indices: 92081811--92082008 Score: 256
Period size: 103 Copynumber: 1.9 Consensus size: 103
92081801 TTCAATTATG
* * **
92081811 AAAATGATAGCTTCGGCTATCGATTATTAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGA
1 AAAAAGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGAAAACCATCAACTATGAAAAGGGA
* *
92081876 TGGTGATGACCATCGAATATGAAAAGGGATGTTGACGA
66 TGATCATGACCATCGAATATGAAAAGGGATGTTGACGA
* *
92081914 AAAAAGATAGCTTCGGCTATTGATTATGAAAAGGGATGGTGAAAACCATTGAA-TATGAAAAGGG
1 AAAAAGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGAAAACCA-TCAACTATGAAAAGGG
* * * *
92081978 AT-ATCTTCGGCTATCGATTATGAAAAGGGAT
65 ATGATCAT-GACCATCGAATATGAAAAGGGAT
92082009 AGTTTTGGCT
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
102 2 0.02
103 76 0.94
104 3 0.04
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.25
Consensus pattern (103 bp):
AAAAAGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGAAAACCATCAACTATGAAAAGGGA
TGATCATGACCATCGAATATGAAAAGGGATGTTGACGA
Found at i:92085546 original size:5 final size:5
Alignment explanation
Indices: 92085536--92085562 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
92085526 AAGGATGTGA
92085536 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
92085563 TAAAAAACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:92085569 original size:15 final size:14
Alignment explanation
Indices: 92085535--92085569 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
92085525 AAAGGATGTG
92085535 AAAAATAAAATAAA
1 AAAAATAAAATAAA
92085549 ATAAAATAAAATAATA
1 A-AAAATAAAATAA-A
92085565 AAAAA
1 AAAAA
92085570 CACAAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 16 0.84
16 2 0.11
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAAATAAAATAAA
Found at i:92091086 original size:31 final size:31
Alignment explanation
Indices: 92091048--92091110 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
92091038 ACAGGAAAAA
92091048 AACTACTACATGAAACCCTACTAGAAAACCT
1 AACTACTACATGAAACCCTACTAGAAAACCT
92091079 AACTACTACATGAAACCCTACTAGAAAACCT
1 AACTACTACATGAAACCCTACTAGAAAACCT
92091110 A
1 A
92091111 TGTAAAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.29, G:0.06, T:0.19
Consensus pattern (31 bp):
AACTACTACATGAAACCCTACTAGAAAACCT
Found at i:92091101 original size:18 final size:17
Alignment explanation
Indices: 92091049--92091101 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 17
92091039 CAGGAAAAAA
92091049 ACTACTACATGAAACC-
1 ACTACTACATGAAACCT
*
92091065 -CTACTAGA--AAACCT
1 ACTACTACATGAAACCT
92091079 AACTACTACATGAAACCCT
1 -ACTACTACATGAAA-CCT
92091098 ACTA
1 ACTA
92091102 GAAAACCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
13 5 0.17
15 7 0.24
16 7 0.24
18 7 0.24
19 3 0.10
ACGTcount: A:0.43, C:0.30, G:0.06, T:0.21
Consensus pattern (17 bp):
ACTACTACATGAAACCT
Found at i:92093085 original size:2 final size:2
Alignment explanation
Indices: 92093078--92093102 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
92093068 AAACACATAT
92093078 CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA C
92093103 CATTTAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Done.