Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 278 of 333
Found at i:92098003 original size:79 final size:79
Alignment explanation
Indices: 92097866--92098015 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 79
92097856 TTCTATTTGT
* ** * * * *
92097866 AAATAGAAATCAATTGAATAATTCTATTTTAGGATTTTATTCTTGTTGTTCAAAAGAATTTGTTT
1 AAATAGAAATCAATTGAACAATTCTATTTTAGGATTCCATTCCTATAGTTCAAAAGAATTTATTT
92097931 TATTTTCTGTTTCC
66 TATTTTCTGTTTCC
* * *
92097945 AAATAGAAATCAATTGAACAATTCTGTTTCT-GGATTCCATTCCTATAGTTTAATAGAATTTATT
1 AAATAGAAATCAATTGAACAATTCTATTT-TAGGATTCCATTCCTATAGTTCAAAAGAATTTATT
92098009 TTATTTT
65 TTATTTT
92098016 TGATTCTTAA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 59 0.98
80 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.47
Consensus pattern (79 bp):
AAATAGAAATCAATTGAACAATTCTATTTTAGGATTCCATTCCTATAGTTCAAAAGAATTTATTT
TATTTTCTGTTTCC
Found at i:92100157 original size:17 final size:19
Alignment explanation
Indices: 92100137--92100173 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
92100127 AAATTACATG
92100137 TGTAACAA-TAT-TATACT
1 TGTAACAATTATATATACT
*
92100154 TGTAATAATTATATATACT
1 TGTAACAATTATATATACT
92100173 T
1 T
92100174 ACTTATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.41
18 3 0.18
19 7 0.41
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (19 bp):
TGTAACAATTATATATACT
Found at i:92100201 original size:5 final size:5
Alignment explanation
Indices: 92100191--92100223 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
92100181 ATTTAAGAAA
92100191 ATATT ATATT ATATT ATATT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATA
92100224 ATTAAAGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATATT
Found at i:92102433 original size:43 final size:43
Alignment explanation
Indices: 92102298--92102454 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 43
92102288 TGTGTGACCG
*
92102298 TGTAAGACCACGTCTGGGACATTGGCATC-A-ACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACAATGGCATCGATA-TT-TG-TTTACA
* * ** * **
92102342 TGTAAGACCATGTCTAGGAC-ATCTACATCG-TATTTAATTT-TG
1 TGTAAGACCACGTCTGGGACAAT-GGCATCGATATTT-GTTTACA
92102384 TGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTGTTTACA
1 TGTAAGACCAC-GTCTGGGACAATGGCATCGATATTTGTTTACA
* *
92102427 TGTAAGACCACGTCTGGTACATTGGCAT
1 TGTAAGACCACGTCTGGGACAATGGCAT
92102455 TGTACGAGCT
Statistics
Matches: 87, Mismatches: 17, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
42 25 0.29
43 36 0.41
44 25 0.29
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAATGGCATCGATATTTGTTTACA
Found at i:92104537 original size:43 final size:42
Alignment explanation
Indices: 92104473--92104623 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 42
92104463 CATAGGATTT
*
92104473 TCGATATCTG-TTCTCGTGTAAGACCATGTTTAGGACATTGGCA
1 TCGATATGTGATT-TCGTGTAAGACCATGTTT-GGACATTGGCA
* * *
92104516 TCGATATATGATTTCGAGTAAGACCATGTCTGGAACATTGGCA
1 TCGATATGTGATTTCGTGTAAGACCATGTTTGG-ACATTGGCA
* *
92104559 TC-ATAATTGTGA-TTCGTGTAAGACCCTGTTTGGGACAGTGGCA
1 TCGAT-A-TGTGATTTCGTGTAAGACCATGTTT-GGACATTGGCA
* * *
92104602 TCGACATGTGATTACATGTAAG
1 TCGATATGTGATTTCGTGTAAG
92104624 GCCACGTCTG
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
42 9 0.10
43 72 0.80
44 9 0.10
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TCGATATGTGATTTCGTGTAAGACCATGTTTGGACATTGGCA
Found at i:92104633 original size:86 final size:86
Alignment explanation
Indices: 92104486--92104645 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 86
92104476 ATATCTGTTC
* * * *
92104486 TCGTGTAAGACCATGTTTAGGACATTGGCATCGATATATGATTTCGAGTAAGACCATGTCTGGAA
1 TCGTGTAAGACCATGTTTAGGACAGTGGCATCGACATATGATTACGAGTAAGACCACGTCTGGAA
92104551 CATTGGCATCATAATTGTGAT
66 CATTGGCATCATAATTGTGAT
* * * * *
92104572 TCGTGTAAGACCCTGTTTGGGACAGTGGCATCGACATGTGATTAC-ATGTAAGGCCACGTCTGGG
1 TCGTGTAAGACCATGTTTAGGACAGTGGCATCGACATATGATTACGA-GTAAGACCACGTCTGGA
*
92104636 ACGTTGGCAT
65 ACATTGGCAT
92104646 TGTACGATAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
85 1 0.02
86 62 0.98
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (86 bp):
TCGTGTAAGACCATGTTTAGGACAGTGGCATCGACATATGATTACGAGTAAGACCACGTCTGGAA
CATTGGCATCATAATTGTGAT
Found at i:92108317 original size:14 final size:14
Alignment explanation
Indices: 92108300--92108330 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
92108290 TATATACAAA
92108300 TATATATATGTGTT
1 TATATATATGTGTT
*
92108314 TATATATGTGTGTT
1 TATATATATGTGTT
92108328 TAT
1 TAT
92108331 TTGAAGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (14 bp):
TATATATATGTGTT
Found at i:92108785 original size:24 final size:24
Alignment explanation
Indices: 92108758--92108916 Score: 135
Period size: 24 Copynumber: 6.6 Consensus size: 24
92108748 GAAATAACTT
* *
92108758 TGGCACTATGTATGCGGATCTGAA
1 TGGCACTATGTGTGCGGATTTGAA
*
92108782 TGGCACTATGTGTGCAGG-TTTGTA
1 TGGCACTATGTGTGC-GGATTTGAA
* *
92108806 TGGCACTATGTGTGCAGATTTGTA
1 TGGCACTATGTGTGCGGATTTGAA
92108830 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* * * * *
92108854 TGTCAATACGAGTGTGGATTACT-AA
1 TGGCACTATGTGTGCGGATT--TGAA
* * **
92108879 -GGCACTATGTGTGTGGGTTAAAA
1 TGGCACTATGTGTGCGGATTTGAA
*
92108902 TGGCACTATGGGTGC
1 TGGCACTATGTGTGC
92108917 AAATTTCCTT
Statistics
Matches: 110, Mismatches: 19, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
23 3 0.03
24 102 0.93
25 4 0.04
26 1 0.01
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:92114333 original size:40 final size:40
Alignment explanation
Indices: 92114289--92114476 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
92114279 GCTACTAGCT
92114289 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
92114329 CAAATGCCTTCTGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
92114369 AAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
92114409 CAAATGCCTTC-GGTCTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
92114448 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
92114477 CAATCCGAAT
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.25
40 99 0.74
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:92121677 original size:46 final size:46
Alignment explanation
Indices: 92121610--92121835 Score: 214
Period size: 47 Copynumber: 4.9 Consensus size: 46
92121600 TGTAACCCAC
*
92121610 CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A-T
1 CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGG-ATGC-CTAGT
*
92121656 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGATGCCTAGTT
1 CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGGATGCCTAG-T
* **
92121702 ACATCTCTCGAACTCGGACTCAACTCAACGAGCTC-GGATGCCTAGTT
1 CCATAACT-GAACTCGGACTCAACTCAACGAGCTCGGGATGCCTAG-T
* ** * * *
92121749 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A-T
1 CCATAACT-GAACTCGGACTCAACTCAACGAGCTCGG-GATGC-CTAGT
* *
92121796 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGC
1 CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGGATGC
92121836 TCAACCATCC
Statistics
Matches: 158, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.01
44 7 0.04
45 3 0.02
46 64 0.41
47 77 0.49
48 1 0.01
49 4 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGGATGCCTAGT
Found at i:92121733 original size:47 final size:47
Alignment explanation
Indices: 92121664--92121786 Score: 237
Period size: 47 Copynumber: 2.6 Consensus size: 47
92121654 ATCCATAAGT
92121664 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
92121711 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
*
92121758 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
92121787 CATTCGCATC
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:92125155 original size:40 final size:40
Alignment explanation
Indices: 92125111--92125298 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
92125101 GCTACTAGCT
92125111 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
92125151 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
92125191 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
92125231 CAAATGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
92125270 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
92125299 CAATCCGAAT
Statistics
Matches: 132, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 98 0.74
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:92136770 original size:13 final size:13
Alignment explanation
Indices: 92136752--92136782 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
92136742 TTTTTTGACC
92136752 GAAAGAAACAAAA
1 GAAAGAAACAAAA
*
92136765 GAAAGAAATAAAA
1 GAAAGAAACAAAA
92136778 GAAAG
1 GAAAG
92136783 CTTTAGGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.19, T:0.03
Consensus pattern (13 bp):
GAAAGAAACAAAA
Found at i:92137694 original size:43 final size:42
Alignment explanation
Indices: 92137600--92137759 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 42
92137590 ATATGTGTTC
* * **
92137600 TCGTGTAAGACCATGTCTAGGACGTTGGCATCG-ATATACGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGAAT-TGTGA-T
* *
92137643 TCGAGTAAGACCATGTCTGGGATATTGGCATCGTAATTGTGAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCG-AATTGTGAT
* * * *
92137686 TCGTGTAAGACCTTATCCGGGACAGTGGCATCGACA-TGTGAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGA-ATTGTGAT
* *
92137728 TACATGTAAGACCACGTCTGGGACATTGGCAT
1 T-CGTGTAAGACCATGTCTGGGACATTGGCAT
92137760 TGTACGATAT
Statistics
Matches: 95, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
42 8 0.08
43 82 0.86
44 3 0.03
45 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCGAATTGTGAT
Found at i:92141328 original size:17 final size:17
Alignment explanation
Indices: 92141287--92141329 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
92141277 GTTTCGGCTA
*
92141287 GAAGAAAAAGCAAAAAG
1 GAAGAAAGAGCAAAAAG
92141304 GAAGAAAGAGCAAAAAG
1 GAAGAAAGAGCAAAAAG
92141321 GAAGAAAGA
1 GAAGAAAGA
92141330 AAATGAAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.67, C:0.05, G:0.28, T:0.00
Consensus pattern (17 bp):
GAAGAAAGAGCAAAAAG
Found at i:92142683 original size:34 final size:35
Alignment explanation
Indices: 92142625--92142696 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
92142615 CGTATCCTAG
*
92142625 CTACAGTCTCAGTCTTCTAAAGTTTTCAGT-TTTCC
1 CTACAGTCTCAGTCTTCTAAAG-TTTCAGTATTACC
* *
92142660 CTACTGTCTCAGT-TTCTACAGTTTCAGTATTACC
1 CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
92142694 CTA
1 CTA
92142697 ACTACAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 7 0.21
34 14 0.42
35 12 0.36
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
Found at i:92152002 original size:12 final size:13
Alignment explanation
Indices: 92151966--92152003 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
92151956 AAATATTTGA
92151966 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
92151979 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
92151993 CTTG-TCTTAAT
1 CTTGTTCTTAAT
92152004 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:92156672 original size:30 final size:30
Alignment explanation
Indices: 92156627--92156686 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
92156617 ATTTAATACG
* *
92156627 AACTTTGGCAAAATTACATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
92156657 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
92156687 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:92158849 original size:68 final size:64
Alignment explanation
Indices: 92158739--92158889 Score: 162
Period size: 68 Copynumber: 2.3 Consensus size: 64
92158729 ATACAGATAG
* * * * *
92158739 TATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGATACAAGACA
1 TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTAG-ACAAGAGAGATAC--GACA
92158803 TTA
63 -TA
* * *
92158806 TGATGTAGCTAGGTCGCATGGATGATACT-ATGTGTACACCATGTAGACAAGAGAGCTACGAGAT
1 T-ATGTAGCTAGGTCGCATGGATGATACTGA-GTGCACACCATGTAGACAAGAGAGATACGACAT
92158870 A
64 A
92158871 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
92158890 TGTGGTTCTA
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
64 18 0.25
65 3 0.04
66 3 0.04
67 2 0.03
68 46 0.63
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTAGACAAGAGAGATACGACATA
Found at i:92164576 original size:13 final size:13
Alignment explanation
Indices: 92164558--92164582 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92164548 AAATCTGTAT
92164558 GTGTGAAAATTTC
1 GTGTGAAAATTTC
92164571 GTGTGAAAATTT
1 GTGTGAAAATTT
92164583 AATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:92165802 original size:43 final size:43
Alignment explanation
Indices: 92165681--92165830 Score: 168
Period size: 43 Copynumber: 3.5 Consensus size: 43
92165671 TGTGTGACCG
* *
92165681 TGTAAGACCACGTCTGGGAC-GTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCATGTCTGGGACAG-T-GCATCGA-TATTTGATTTACA
*
92165725 TGTAAGACCATGTCTGGGACA-TCAGCATCG-TATTTGATTT-CG
1 TGTAAGACCATGTCTGGGACAGT--GCATCGATATTTGATTTACA
*
92165767 TGTAAGACCTTGTCTGGGACAGTGTCATCGATATTTG-TTTACA
1 TGTAAGACCATGTCTGGGACAGTG-CATCGATATTTGATTTACA
92165810 TGTAAGACCATGTCTGGGACA
1 TGTAAGACCATGTCTGGGACA
92165831 TTGGCATTGT
Statistics
Matches: 92, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
41 1 0.01
42 30 0.33
43 36 0.39
44 25 0.27
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGCATCGATATTTGATTTACA
Found at i:92165852 original size:86 final size:86
Alignment explanation
Indices: 92165679--92165845 Score: 205
Period size: 85 Copynumber: 2.0 Consensus size: 86
92165669 TATGTGTGAC
92165679 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTACATGTAAGACCATGTCTGGGA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTACATGTAAGACCATGTCTGGGA
***
92165744 CATCAGCATCGTATTTGATTT
66 CATCAGCATCGTACGAGATTT
** * *
92165765 CGTGTAAGACCTTGTCTGGGACAG-TGTCATCGA-TATTTG-TTTACATGTAAGACCATGTCTGG
1 CGTGTAAGACCACGTCTGGGAC-GTTGGCATCGACT-TATGATTTACATGTAAGACCATGTCTGG
** *
92165827 GACATTGGCATTGTACGAG
64 GACATCAGCATCGTACGAG
92165846 CTTTTCGAGC
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
85 37 0.54
86 31 0.45
87 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.32
Consensus pattern (86 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTACATGTAAGACCATGTCTGGGA
CATCAGCATCGTACGAGATTT
Found at i:92170879 original size:47 final size:47
Alignment explanation
Indices: 92170827--92171234 Score: 636
Period size: 47 Copynumber: 8.6 Consensus size: 47
92170817 GATAATTGTG
* * * *
92170827 ATGTGAATGTATATATATGTGATAAGGCCGAATGACCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
92170874 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
92170923 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
92170970 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
92171019 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
92171068 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
92171115 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
92171162 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
92171209 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
92171235 TTCCGAAGGG
Statistics
Matches: 339, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 198 0.58
49 141 0.42
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:92170929 original size:96 final size:94
Alignment explanation
Indices: 92170827--92171234 Score: 636
Period size: 96 Copynumber: 4.3 Consensus size: 94
92170817 GATAATTGTG
* * * *
92170827 ATGTGAATGTATATATATGTGATAAGGCCGAATGACCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
92170892 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
92170923 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
92170988 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
92171019 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
92171084 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
92171115 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
92171180 GTGACAGGGCCGAGTGGCCAACGTGATGG
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
92171209 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
92171235 TTCCGAAGGG
Statistics
Matches: 294, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
94 98 0.33
96 149 0.51
98 47 0.16
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:92173164 original size:4 final size:4
Alignment explanation
Indices: 92173155--92173199 Score: 58
Period size: 4 Copynumber: 11.2 Consensus size: 4
92173145 CGAAACAGGG
92173155 GAAA GAAA GAAGA GAAA GAAGA GAAA GAAA GAAA G--A GAAA GAAA G
1 GAAA GAAA GAA-A GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA G
92173200 GAGAAAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 2 0.05
4 27 0.73
5 8 0.22
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:92173170 original size:9 final size:9
Alignment explanation
Indices: 92173158--92173190 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
92173148 AACAGGGGAA
92173158 AGAAAGAAG
1 AGAAAGAAG
92173167 AGAAAGAAG
1 AGAAAGAAG
92173176 AGAAAGAA-
1 AGAAAGAAG
92173184 AGAAAGA
1 AGAAAGA
92173191 GAAAGAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (9 bp):
AGAAAGAAG
Found at i:92173190 original size:14 final size:14
Alignment explanation
Indices: 92173155--92173199 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
92173145 CGAAACAGGG
*
92173155 GAAAGAAAGA-AGA
1 GAAAGAAAGAGAAA
92173168 GAAAG-AAGAGAAA
1 GAAAGAAAGAGAAA
92173181 GAAAGAAAGAGAAA
1 GAAAGAAAGAGAAA
92173195 GAAAG
1 GAAAG
92173200 GAGAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 4 0.14
13 12 0.41
14 13 0.45
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (14 bp):
GAAAGAAAGAGAAA
Found at i:92178635 original size:20 final size:20
Alignment explanation
Indices: 92178610--92178648 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
92178600 CCCTTACATC
92178610 ATTACATAATTGAAACTTTG
1 ATTACATAATTGAAACTTTG
92178630 ATTACATAATTGAAACTTT
1 ATTACATAATTGAAACTTT
92178649 TAAGAGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (20 bp):
ATTACATAATTGAAACTTTG
Found at i:92196444 original size:6 final size:6
Alignment explanation
Indices: 92196435--92196467 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
92196425 AATAAAATTG
*
92196435 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
92196468 GATAGGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:92201856 original size:13 final size:13
Alignment explanation
Indices: 92201838--92201863 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92201828 GGTTGTTTAT
92201838 TAAACTAATTAAC
1 TAAACTAATTAAC
92201851 TAAACTAATTAAC
1 TAAACTAATTAAC
92201864 ATATTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:92210357 original size:13 final size:13
Alignment explanation
Indices: 92210339--92210367 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
92210329 GGTTGTTTAT
92210339 TAAACTAATTAAC
1 TAAACTAATTAAC
92210352 TAAACTAATTAAC
1 TAAACTAATTAAC
92210365 TAA
1 TAA
92210368 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:92218037 original size:45 final size:44
Alignment explanation
Indices: 92217940--92218066 Score: 136
Period size: 45 Copynumber: 2.9 Consensus size: 44
92217930 TTTTCTCAAA
* * *
92217940 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAAT
1 TCACCGGCATTATAGTCTGCTAGGCTCGAAGGCCCGAATAT-AAT
*
92217982 TCACCAGCATTATAGTCTGCTAGGCTCGAAGGCCCGAATAGT-AT
1 TCACCGGCATTATAGTCTGCTAGGCTCGAAGGCCCGAATA-TAAT
* * *
92218026 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGTCTGCTAGGCTCGAAGGCCCGAATA
92218067 ATCAAGTTAA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 10 0.14
43 13 0.18
44 9 0.12
45 39 0.54
46 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (44 bp):
TCACCGGCATTATAGTCTGCTAGGCTCGAAGGCCCGAATATAAT
Found at i:92218506 original size:43 final size:42
Alignment explanation
Indices: 92218396--92218528 Score: 160
Period size: 43 Copynumber: 3.1 Consensus size: 42
92218386 CCTGCATTAT
* * *
92218396 GCCTGCTAGGCACGAAGGCCCAAATACATATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACA-ATCACCAGCACGAA
*
92218439 GCCTGCTAGGCATGAAGGCCCGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACA-ATCACCAGCACGAA
* * * * *
92218482 GCCTGCTAAGCACGAAGGCTCGAATATAAT-ACCAGCACTAG
1 GCCTGCTAGGCACGAAGGCCCGAATACAATCACCAGCACGAA
92218523 GCCTGC
1 GCCTGC
92218529 GGGATTTATC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 15 0.19
42 2 0.03
43 62 0.78
ACGTcount: A:0.32, C:0.31, G:0.23, T:0.14
Consensus pattern (42 bp):
GCCTGCTAGGCACGAAGGCCCGAATACAATCACCAGCACGAA
Found at i:92218557 original size:38 final size:38
Alignment explanation
Indices: 92218505--92218701 Score: 241
Period size: 38 Copynumber: 5.1 Consensus size: 38
92218495 GAAGGCTCGA
* * *
92218505 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
92218543 ATATAATACTAGCACGAAGCCTGCGAGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** ** *
92218581 ATATTTTACCAGCACGAAGCCTGCGAGTCTTTAAGCCTGG
1 ATATAATACCAGCACGAAGCCTGCG-GGATTTAA-CCCGG
* * *
92218621 ATATAATACCAACACGAAGCCTACGGGATTTAAACCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
92218659 ATATAATACCAGCACGAAGCCTGTGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
92218697 ATATA
1 ATATA
92218702 CATCGAATAT
Statistics
Matches: 132, Mismatches: 25, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
38 96 0.73
39 11 0.08
40 25 0.19
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:92222630 original size:5 final size:5
Alignment explanation
Indices: 92222620--92222697 Score: 156
Period size: 5 Copynumber: 15.6 Consensus size: 5
92222610 ATTTAAGAAA
92222620 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
92222670 ATATT ATATT ATATT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATA
92222698 AAATAAATAA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 73 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATATT
Found at i:92222923 original size:21 final size:21
Alignment explanation
Indices: 92222899--92222940 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
92222889 CGAAACAGGG
*
92222899 GAAAGAAAGAAGAAA-GAGAAA
1 GAAAGAAA-AACAAAGGAGAAA
92222920 GAAAGAAAAACAAAGGAGAAA
1 GAAAGAAAAACAAAGGAGAAA
92222941 ATTTAGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.71, C:0.02, G:0.26, T:0.00
Consensus pattern (21 bp):
GAAAGAAAAACAAAGGAGAAA
Found at i:92224108 original size:16 final size:16
Alignment explanation
Indices: 92224072--92224124 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
92224062 GTTATATACT
* *
92224072 CATGAATTGAGTATGG
1 CATGAAATGAGTATTG
*
92224088 TATGAAATGATGTATT-
1 CATGAAATGA-GTATTG
*
92224104 CATGAATTGAGTATTG
1 CATGAAATGAGTATTG
92224120 CATGA
1 CATGA
92224125 CTGATGCCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 21 0.70
17 4 0.13
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (16 bp):
CATGAAATGAGTATTG
Found at i:92225382 original size:13 final size:13
Alignment explanation
Indices: 92225358--92225392 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
92225348 CAGCCCGCCC
92225358 ATATTA-TTTTTT
1 ATATTATTTTTTT
92225370 ATATTATTTTTTT
1 ATATTATTTTTTT
*
92225383 ATATAATTTT
1 ATATTATTTT
92225393 AAAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
ATATTATTTTTTT
Found at i:92225548 original size:30 final size:29
Alignment explanation
Indices: 92225512--92225571 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
92225502 CAACTTAACA
92225512 AGCAAATGCCTCTAAAATAATAACAAAATT
1 AGCAAATGCCTCTAAAATAATAA-AAAATT
** *
92225542 AGCAAATTTCTTTAAAATAATAAAAAATT
1 AGCAAATGCCTCTAAAATAATAAAAAATT
92225571 A
1 A
92225572 ACAATAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.28
Consensus pattern (29 bp):
AGCAAATGCCTCTAAAATAATAAAAAATT
Found at i:92225630 original size:22 final size:22
Alignment explanation
Indices: 92225605--92225647 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
92225595 TATCCAAACA
92225605 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
92225627 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
92225648 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:92225651 original size:11 final size:11
Alignment explanation
Indices: 92225612--92225652 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
92225602 ACAATAACAA
92225612 CAAAATAGTAG
1 CAAAATAGTAG
* *
92225623 CAACATAATAG
1 CAAAATAGTAG
*
92225634 TAAAATAGTAG
1 CAAAATAGTAG
92225645 CAAAATAG
1 CAAAATAG
92225653 GGAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:92230213 original size:40 final size:40
Alignment explanation
Indices: 92229972--92230205 Score: 389
Period size: 40 Copynumber: 5.9 Consensus size: 40
92229962 ATTCGGATTG
92229972 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
92230011 ATATCCGGGCTACGTCCCGAAGGCATTTGTGCTAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92230051 ATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92230091 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
92230131 ATAACCGGGCTAAGTCCCGAAGGCAATTATGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
92230171 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
92230206 AAGCTATATC
Statistics
Matches: 181, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 12 0.07
40 169 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:92230213 original size:120 final size:119
Alignment explanation
Indices: 92229972--92230232 Score: 382
Period size: 120 Copynumber: 2.2 Consensus size: 119
92229962 ATTCGGATTG
* * * *
92229972 ATAACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTACGTCCCGAAGGCAT
1 ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAA
* * * *
92230037 TTGTGCTAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTATGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTTGAGCGAGTAACT
92230091 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
92230156 ATTATGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCT
65 ATTATGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTTGAGCGAGTAA-CT
* *
92230211 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCT-AAGCCCGAAGG
92230233 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
119 27 0.21
120 101 0.79
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (119 bp):
ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAA
TTATGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTTGAGCGAGTAACT
Found at i:92238294 original size:40 final size:40
Alignment explanation
Indices: 92238053--92238286 Score: 398
Period size: 40 Copynumber: 5.9 Consensus size: 40
92238043 ATTCGGATTG
*
92238053 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
92238092 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
92238132 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
92238172 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
92238212 ATAACCGGACTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* * *
92238252 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAG
92238287 AAGCTATATC
Statistics
Matches: 186, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 13 0.07
40 173 0.93
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:92238294 original size:120 final size:119
Alignment explanation
Indices: 92238053--92238313 Score: 391
Period size: 120 Copynumber: 2.2 Consensus size: 119
92238043 ATTCGGATTG
* * * *
92238053 ATAACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGACTAAGTCCCGAAGGCAA
* *
92238118 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTAACT
92238172 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGACTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACTATAACCGGACTAAGTCCCGAAGGCA
* *
92238237 ATTGTGCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCT
65 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTAA-CT
* *
92238292 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCT-AAGCCCGAAGG
92238314 TACTTGGTTT
Statistics
Matches: 129, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
119 27 0.21
120 102 0.79
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (119 bp):
ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGACTAAGTCCCGAAGGCAA
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTAACT
Found at i:92242174 original size:14 final size:14
Alignment explanation
Indices: 92242155--92242182 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
92242145 TAAATCATTC
92242155 CAAGATTTTTTATA
1 CAAGATTTTTTATA
92242169 CAAGATTTTTTATA
1 CAAGATTTTTTATA
92242183 TGTAGCAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
CAAGATTTTTTATA
Found at i:92242530 original size:17 final size:18
Alignment explanation
Indices: 92242504--92242542 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
92242494 GTTAGTGTGG
92242504 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
92242520 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
92242538 AAAAT
1 AAAAT
92242543 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:92242719 original size:15 final size:15
Alignment explanation
Indices: 92242699--92242729 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
92242689 AAAACAATAT
92242699 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
92242714 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
92242729 A
1 A
92242730 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:92246101 original size:15 final size:15
Alignment explanation
Indices: 92246091--92246120 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92246081 TCCCTTCTTG
92246091 ACCACGACCTTTTCC
1 ACCACGACCTTTTCC
*
92246106 ACCACGACCATTTCC
1 ACCACGACCTTTTCC
92246121 TCGATCTCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.47, G:0.07, T:0.23
Consensus pattern (15 bp):
ACCACGACCTTTTCC
Found at i:92246888 original size:17 final size:18
Alignment explanation
Indices: 92246862--92246900 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
92246852 CAAATTGTGG
92246862 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
92246878 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
92246896 AAAAT
1 AAAAT
92246901 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:92247077 original size:15 final size:15
Alignment explanation
Indices: 92247057--92247087 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
92247047 AAAACAATAT
92247057 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
92247072 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
92247087 A
1 A
92247088 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:92253155 original size:191 final size:190
Alignment explanation
Indices: 92252792--92253169 Score: 490
Period size: 191 Copynumber: 2.0 Consensus size: 190
92252782 GGCTCCACCA
*
92252792 TTATTTTGCTAGCAATCATAACTCATCATTAAGAATATAATTTGTGTTAAAAAATATAATTAAAT
1 TTATTTTGCTAGCAATCATAACCCATCATTAAGAATATAATTTGTGTTAAAAAATATAATTAAAT
* * * * *
92252857 GATGGAGGGAGTGGGACAGGCAACACATGTATCTAGTTTACACCGGTTAAAATACAGGTTGAGGA
66 GATGGAAGAAGTAGAACAGGCAACACATGTATCTAGTTTACACCGGTTAAAATACAGGTTGAAGA
* *
92252922 AAAATCATTTTTAAAGGCCGGAGAAAGGAACATGAAAGGCAACACCAATGGAGGCATAGT
131 AAAATAATTTTTAAAGGACGGAGAAAGGAACATGAAAGGCAACACCAATGGAGGCATAGT
* *
92252982 TTATTTTGCTAGCAATCATAACCCTATCATTAAGTATATAATTTGTGTTAAAAAATATATTTAAA
1 TTATTTTGCTAGCAATCATAACCC-ATCATTAAGAATATAATTTGTGTTAAAAAATATAATTAAA
* * * * * * **
92253047 TGATGGAAGAAGTAGAAGAGGCGACACTTGTATGTAGTTTATACCGGTTATAATATGGGTT-AAG
65 TGATGGAAGAAGTAGAACAGGCAACACATGTATCTAGTTTACACCGGTTAAAATACAGGTTGAAG
* * * * * * *
92253111 AAAAATTAATTTTTAAAGTATGGAG-GAGGTAACCTGACAGGCAACACTAGTGGAGGCAT
130 AAAAA-TAATTTTTAAAGGACGGAGAAAGG-AACATGAAAGGCAACACCAATGGAGGCAT
92253170 CGTGTTAGGC
Statistics
Matches: 160, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
190 33 0.21
191 127 0.79
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.29
Consensus pattern (190 bp):
TTATTTTGCTAGCAATCATAACCCATCATTAAGAATATAATTTGTGTTAAAAAATATAATTAAAT
GATGGAAGAAGTAGAACAGGCAACACATGTATCTAGTTTACACCGGTTAAAATACAGGTTGAAGA
AAAATAATTTTTAAAGGACGGAGAAAGGAACATGAAAGGCAACACCAATGGAGGCATAGT
Found at i:92255892 original size:19 final size:20
Alignment explanation
Indices: 92255851--92255891 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
92255841 TATTTAATTA
* *
92255851 TTTATGTTTAGTAATATAAT
1 TTTATGTTTAATAACATAAT
92255871 TTTAT-TTTAATAACAT-AT
1 TTTATGTTTAATAACATAAT
92255889 TTT
1 TTT
92255892 TGACAATAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 5 0.26
19 9 0.47
20 5 0.26
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTATGTTTAATAACATAAT
Found at i:92261018 original size:15 final size:16
Alignment explanation
Indices: 92260998--92261035 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
92260988 ATAAATATGA
* *
92260998 TAAATTT-GTTCTTAT
1 TAAATTTCGTTATAAT
92261013 TAAATTTCGTTATAAT
1 TAAATTTCGTTATAAT
92261029 TAAATTT
1 TAAATTT
92261036 TATTATTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (16 bp):
TAAATTTCGTTATAAT
Found at i:92262116 original size:11 final size:9
Alignment explanation
Indices: 92262100--92262125 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
92262090 AAAATGCATG
92262100 TATATATAT
1 TATATATAT
92262109 TATATATAT
1 TATATATAT
92262118 TATATATA
1 TATATATA
92262126 CATGTATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TATATATAT
Found at i:92262689 original size:18 final size:19
Alignment explanation
Indices: 92262653--92262693 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
92262643 ATAATAAGAA
92262653 AAATATAATGTGAAAATTG
1 AAATATAATGTGAAAATTG
*
92262672 AAATTTAATGTG-AAATTG
1 AAATATAATGTGAAAATTG
92262690 AAAT
1 AAAT
92262694 GTGTAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.34
Consensus pattern (19 bp):
AAATATAATGTGAAAATTG
Found at i:92263433 original size:43 final size:43
Alignment explanation
Indices: 92263367--92263451 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
92263357 TGTGATTGAT
* *
92263367 ATTGAAATGGCAAAGACGGGAAATGAATATGAGATGAGAAATA
1 ATTGAAATGACAAAGACGAGAAATGAATATGAGATGAGAAATA
* * *
92263410 ATTGAAATGACAAATATGAGAAATGATTATGAGATGAGAAAT
1 ATTGAAATGACAAAGACGAGAAATGAATATGAGATGAGAAAT
92263452 GAAAGATGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.49, C:0.04, G:0.25, T:0.22
Consensus pattern (43 bp):
ATTGAAATGACAAAGACGAGAAATGAATATGAGATGAGAAATA
Found at i:92264521 original size:21 final size:22
Alignment explanation
Indices: 92264485--92264526 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
92264475 TCCCTGAAAT
*
92264485 CAAAATTTTTGTAATTATTTCC
1 CAAAATTTTAGTAATTATTTCC
*
92264507 CAAAATTTTAG-AATTGTTTC
1 CAAAATTTTAGTAATTATTTC
92264527 AAATTAGTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.48
Consensus pattern (22 bp):
CAAAATTTTAGTAATTATTTCC
Found at i:92264840 original size:49 final size:49
Alignment explanation
Indices: 92264765--92264872 Score: 171
Period size: 49 Copynumber: 2.2 Consensus size: 49
92264755 TCTAGATGGG
* * * *
92264765 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAGTTTAGCAATGT
1 ATAAATAGTGATAAGAGTGTAAACAGTGGAAGACCAAGTTTAGAAATGC
92264814 ATAAATAGTGATAAGAGTGTAAACAGTGGAAGACCAAGTTTAGAAATGC
1 ATAAATAGTGATAAGAGTGTAAACAGTGGAAGACCAAGTTTAGAAATGC
92264863 ATAACATAGT
1 ATAA-ATAGT
92264873 TTATTATTCG
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
49 49 0.91
50 5 0.09
ACGTcount: A:0.44, C:0.07, G:0.24, T:0.25
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGTGTAAACAGTGGAAGACCAAGTTTAGAAATGC
Found at i:92274233 original size:13 final size:13
Alignment explanation
Indices: 92274215--92274243 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
92274205 TAAATTTGAA
92274215 TATTTAAAAAATT
1 TATTTAAAAAATT
92274228 TATTTAAAAAATT
1 TATTTAAAAAATT
92274241 TAT
1 TAT
92274244 AAGTTGATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TATTTAAAAAATT
Found at i:92285844 original size:39 final size:39
Alignment explanation
Indices: 92285801--92285877 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
92285791 CAGTACATGT
92285801 GTATGTTAAATTTCAAATAAAGAAAACATTGTTCCTTGC
1 GTATGTTAAATTTCAAATAAAGAAAACATTGTTCCTTGC
92285840 GTATGTTAAATTTCAAATAAAGAAAACATTGTTCCTTG
1 GTATGTTAAATTTCAAATAAAGAAAACATTGTTCCTTG
92285878 ACATGTCTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (39 bp):
GTATGTTAAATTTCAAATAAAGAAAACATTGTTCCTTGC
Found at i:92287863 original size:48 final size:46
Alignment explanation
Indices: 92287744--92287865 Score: 120
Period size: 46 Copynumber: 2.6 Consensus size: 46
92287734 ACATTACGAG
** * * *
92287744 AGCTAGTGTAAGATATGTCTAGGACATGCATCAGCATTGAGACGAG
1 AGCTAGTGTAAGACCTGTCTAGGACATGCATCAGCATCGAGAAGAA
* * * * *
92287790 AGCTAGTGTAAGGCAC-GTCTGGGACATGCATCGGCCTCGAGATATACA
1 AGCTAGTGTAAGAC-CTGTCTAGGACATGCATCAGCATCGAGA-AGA-A
92287838 AGCTAGTGTAAGACCTGTCTAGGACATG
1 AGCTAGTGTAAGACCTGTCTAGGACATG
92287866 GCGTCAGCTT
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
46 34 0.57
47 2 0.03
48 24 0.40
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGCTAGTGTAAGACCTGTCTAGGACATGCATCAGCATCGAGAAGAA
Found at i:92294722 original size:47 final size:47
Alignment explanation
Indices: 92294670--92295171 Score: 788
Period size: 47 Copynumber: 10.6 Consensus size: 47
92294660 GATAATTGTG
* *
92294670 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
92294717 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
92294764 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
92294813 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
92294862 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
92294909 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
92294956 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
92295005 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
92295052 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
92295099 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
92295146 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
92295172 TCCCGAAGGG
Statistics
Matches: 427, Mismatches: 24, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 288 0.67
49 139 0.33
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:92294777 original size:96 final size:96
Alignment explanation
Indices: 92294670--92295171 Score: 804
Period size: 96 Copynumber: 5.3 Consensus size: 96
92294660 GATAATTGTG
92294670 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
92294733 ATGTGATAAGGCCTAATAGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
* *
92294764 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
92294829 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
92294862 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
92294925 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
92294956 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
92295021 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
*
92295052 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * *
92295115 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
92295146 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
92295172 TCCCGAAGGG
Statistics
Matches: 379, Mismatches: 21, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
94 144 0.38
95 3 0.01
96 187 0.49
98 45 0.12
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:92294817 original size:143 final size:143
Alignment explanation
Indices: 92294670--92295171 Score: 832
Period size: 143 Copynumber: 3.5 Consensus size: 143
92294660 GATAATTGTG
92294670 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
92294733 ATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
92294798 TAGCCAATGTGATGA
129 TGGCCAATGTGATGA
92294813 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
92294878 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
92294943 GCCAATGTGATGA
131 GCCAATGTGATGA
92294956 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
92295021 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
92295086 GCCGATGTGATGA
131 GCCAATGTGATGA
* * * * * * * *
92295099 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
92295162 ATGTGATAAG
66 ATGTGATAAG
92295172 TCCCGAAGGG
Statistics
Matches: 341, Mismatches: 16, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
141 54 0.16
143 189 0.55
144 2 0.01
145 96 0.28
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCAATGTGATGA
Found at i:92298534 original size:48 final size:48
Alignment explanation
Indices: 92298475--92298847 Score: 229
Period size: 46 Copynumber: 7.9 Consensus size: 48
92298465 AGGCAACATT
* *
92298475 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATCGAG
* * * *
92298523 ATGAGAGCTAGTGTAAGA-CATGTCTAGGACGT-GCATTAGCCTCGAA
1 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATCGAG
* * *
92298569 ATGTA-AGCCAGTGTAAGA-CATGTCTGGGATAT-GCATCAGC-TACGAG
1 ATG-AGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCAT-CGAG
* * * *
92298615 ATGTG-TC-AATGTAAGACCATGTCTAGGACATGGCATCAGCA-C-AT
1 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATCGAG
* * * ** *
92298659 AT-AGAGGCATCAGTGTAAAACCATGTTTGGGACATGGCATTGGCAT-GAAT
1 ATGAGA-GC-T-AGTGTAAGACCATGTCTAGGACATGGCATCAGCATCG-AG
* * * ** * *
92298709 ATGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGATT
1 A--TGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATCGA-G
* * * **
92298760 TTGATA-CTTAGTGTAAGACCATGTCTGGGACATGGCATCA--A-CTTG
1 ATGAGAGC-TAGTGTAAGACCATGTCTAGGACATGGCATCAGCATCGAG
* *
92298805 ATGGATGAGCTAGTGTAAGACCAAGTCTAAGACATGGCATCAG
1 AT-GA-GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAG
92298848 TATTATACCC
Statistics
Matches: 255, Mismatches: 46, Indels: 48
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.00
44 11 0.04
45 17 0.07
46 59 0.23
47 44 0.17
48 48 0.19
49 32 0.13
50 35 0.14
51 2 0.01
52 3 0.01
53 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (48 bp):
ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATCGAG
Found at i:92298732 original size:50 final size:49
Alignment explanation
Indices: 92298624--92298797 Score: 160
Period size: 50 Copynumber: 3.6 Consensus size: 49
92298614 GATGTGTCAA
* ** * *
92298624 TGTAAGACCATGTCTAGGACATGGCATCAGCA-C-ATAT-AGAGGCATCAG
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT-TGTGAGAC-TCAG
* *
92298672 TGTAAAACCATGTTTGGGACATGGCATTGGCAT-GAATATGTGAGAGC-CAG
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCG-AT-TGTGAGA-CTCAG
* * * * *
92298722 TGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGATTTTGATACTTAG
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATTGTGAGACTCAG
92298771 TGTAAGACCATGTCTGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
92298798 CAACTTGATG
Statistics
Matches: 104, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
48 28 0.27
49 33 0.32
50 38 0.37
51 4 0.04
52 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATTGTGAGACTCAG
Found at i:92305046 original size:79 final size:80
Alignment explanation
Indices: 92304945--92305206 Score: 363
Period size: 79 Copynumber: 3.3 Consensus size: 80
92304935 TACTCGTTCA
* * * **
92304945 AATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
92305008 ATTTAGTAACTCGCACC
64 ATTTAGTAACTCGCACC
92305025 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
*
92305089 TTAGTAACTCACACC
66 TTAGTAACTCGCACC
92305104 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
* * * *
92305168 ATGGTCACTTAGCA-C
66 TTAGTAAC-TCGCACC
*
92305183 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
92305207 CATCATTCGA
Statistics
Matches: 166, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
78 3 0.02
79 137 0.83
80 26 0.16
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
TTAGTAACTCGCACC
Found at i:92305206 original size:40 final size:40
Alignment explanation
Indices: 92304924--92305206 Score: 312
Period size: 40 Copynumber: 7.1 Consensus size: 40
92304914 CAGAATTTAA
** * *
92304924 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92304964 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92305004 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
92305043 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
92305083 CCGGATTTAGTAACTCACACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
92305122 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
92305162 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
92305202 CCGGA
1 CCGGA
92305207 CATCATTCGA
Statistics
Matches: 206, Mismatches: 25, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
38 4 0.02
39 64 0.31
40 124 0.60
41 14 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:92311873 original size:20 final size:20
Alignment explanation
Indices: 92311848--92311914 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
92311838 ATTTTGATAT
92311848 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
92311868 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
92311888 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
92311908 ACATGAT
1 ACATGAT
92311915 GTATTCAGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:92311875 original size:11 final size:11
Alignment explanation
Indices: 92311859--92311914 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
92311849 CATGATATGT
92311859 ATGATATGCAC
1 ATGATATGCAC
*
92311870 ATGATATGTAC
1 ATGATATGCAC
92311881 --GATATGCAC
1 ATGATATGCAC
*
92311890 ATGATATG--T
1 ATGATATGCAC
92311899 ATGATATGCAC
1 ATGATATGCAC
92311910 ATGAT
1 ATGAT
92311915 GTATTCAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:92311993 original size:26 final size:26
Alignment explanation
Indices: 92311964--92312088 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
92311954 GAGGAAGTGC
92311964 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
92311990 AAAAGGGCTTATGCCCTAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
92312016 AAAATGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * *
92312042 AAAAGGGTTTATGTCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
92312068 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
92312089 ATTAAAAGAG
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 87 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:92312047 original size:52 final size:52
Alignment explanation
Indices: 92311964--92312088 Score: 207
Period size: 52 Copynumber: 2.4 Consensus size: 52
92311954 GAGGAAGTGC
92311964 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG-CCCTAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGTCCC-AGTTTATCG
* *
92312016 AAAATGGCTTATGCCCCAGTTTACCGAAAAGGGTTTATGTCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGTCCCAGTTTATCG
*
92312068 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
92312089 ATTAAAAGAG
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
52 65 0.96
53 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGTCCCAGTTTATCG
Found at i:92318788 original size:20 final size:20
Alignment explanation
Indices: 92318720--92318786 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
92318710 ATTTTGATAT
*
92318720 ACATGATATGTATAATATGC
1 ACATGATATGTATGATATGC
*
92318740 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
*
92318760 ACATGATGTGTATGATATGC
1 ACATGATATGTATGATATGC
92318780 ACATGAT
1 ACATGAT
92318787 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:92318865 original size:26 final size:26
Alignment explanation
Indices: 92318836--92318934 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
92318826 GAGGAAGTGC
92318836 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * *
92318862 AAAAGGGCTTATGCCCCAATTCACCC
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * *
92318888 AAAAAGGCTTATGCCTCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
92318914 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
92318935 ATTAAAAGAG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:92324111 original size:46 final size:46
Alignment explanation
Indices: 92324008--92324111 Score: 109
Period size: 46 Copynumber: 2.3 Consensus size: 46
92323998 CAGTTTGGGC
* * * * * *
92324008 TAAACCTACACGAATTGGATAATTGTGCTTGGTTACCCATTACGGT
1 TAAACCTACACAAATCGGATAATAGTACCTGGTCACCCATTACGGT
* * ** *
92324054 TGAACATACACAAATCGGATAATAGTACCTGGTCACCTGTTAGGGT
1 TAAACCTACACAAATCGGATAATAGTACCTGGTCACCCATTACGGT
92324100 TAAACCTACACA
1 TAAACCTACACA
92324112 CCAAATACCT
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (46 bp):
TAAACCTACACAAATCGGATAATAGTACCTGGTCACCCATTACGGT
Found at i:92328762 original size:79 final size:78
Alignment explanation
Indices: 92328660--92328882 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
92328650 GCTCCTCATT
* *
92328660 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
92328725 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
92328740 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
92328803 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
92328818 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
92328881 GA
63 GA
92328883 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:92328777 original size:39 final size:40
Alignment explanation
Indices: 92328660--92328882 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
92328650 GCTCCTCATT
* *
92328660 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
92328700 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
92328740 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
92328779 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
92328818 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
92328859 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92328883 CAGCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:92336689 original size:39 final size:39
Alignment explanation
Indices: 92336646--92336906 Score: 309
Period size: 39 Copynumber: 6.6 Consensus size: 39
92336636 GCTCCTCATT
* *
92336646 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
92336685 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTATCTCGCA
*
92336725 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
* *
92336764 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCG
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
*
92336803 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
* *
92336842 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
92336883 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
92336907 CAGCATTCAA
Statistics
Matches: 201, Mismatches: 13, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
39 141 0.70
40 49 0.24
41 11 0.05
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:92339700 original size:14 final size:14
Alignment explanation
Indices: 92339677--92339711 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
92339667 CTTATTTTAC
* *
92339677 AAAAATTAAACACA
1 AAAAACTAAAAACA
92339691 AAAAACTAAAAACA
1 AAAAACTAAAAACA
92339705 AAAAACT
1 AAAAACT
92339712 TAATAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.74, C:0.14, G:0.00, T:0.11
Consensus pattern (14 bp):
AAAAACTAAAAACA
Found at i:92348649 original size:27 final size:27
Alignment explanation
Indices: 92348609--92348834 Score: 274
Period size: 27 Copynumber: 8.4 Consensus size: 27
92348599 TGGATAAGTT
*
92348609 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
92348636 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
92348663 GTAGAATTACGGAAATACCTCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
92348690 ATAGAATTACCGAAATACCCCTGTA-G
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
92348716 GTAGAATTATCGAAATACTCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
92348743 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
92348770 GTAAAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
92348797 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
92348824 GGAAAATTACC
1 GTAGAATTACC
92348835 ATTTTGCCCC
Statistics
Matches: 169, Mismatches: 29, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.14
27 146 0.86
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:92348795 original size:107 final size:107
Alignment explanation
Indices: 92348609--92348816 Score: 283
Period size: 107 Copynumber: 1.9 Consensus size: 107
92348599 TGGATAAGTT
* ** * * *
92348609 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTATAGGGTAGAATTACG
1 GTAGAATTACTGAAATACCCCTGTAGGATAGAATTACCGAAATACCCCTATAGGGTAAAAATACC
* *
92348674 GAAATACCTCTGTAGGATAGAATTACCGAAATACCCCTGTAG
66 AAAATACCCCTGTAGGATAGAATTACCGAAATACCCCTGTAG
* * *
92348716 GTAGAATTA-TCGAAATACTCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAAAAATAC
1 GTAGAATTACT-GAAATACCCCTGTAGGATAGAATTACCGAAATACCCCTATAGGGTAAAAATAC
* *
92348780 CAAAATACCCCTGTAGGGTAGAATTACCGAGATACCC
65 CAAAATACCCCTGTAGGATAGAATTACCGAAATACCC
92348817 TTGTGGGGGA
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
106 1 0.01
107 86 0.99
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (107 bp):
GTAGAATTACTGAAATACCCCTGTAGGATAGAATTACCGAAATACCCCTATAGGGTAAAAATACC
AAAATACCCCTGTAGGATAGAATTACCGAAATACCCCTGTAG
Found at i:92349513 original size:27 final size:27
Alignment explanation
Indices: 92349482--92349534 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
92349472 CCTCGCTCCA
* *
92349482 ATCTGGTGGCCTAGCCACAATATCTGT
1 ATCTGGTGACCTAGACACAATATCTGT
* *
92349509 ATCTGGTGACTTCGACACAATATCTG
1 ATCTGGTGACCTAGACACAATATCTG
92349535 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (27 bp):
ATCTGGTGACCTAGACACAATATCTGT
Found at i:92349599 original size:33 final size:32
Alignment explanation
Indices: 92349550--92349613 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
92349540 CTCACTGCAA
* *
92349550 TCTGGTGGCTTTGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
92349583 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
92349614 GTGGCTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:92349617 original size:27 final size:26
Alignment explanation
Indices: 92349575--92349634 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
92349565 ACATATATAT
92349575 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGGCCTAGCCACA
* * *
92349601 ATATCTGTATCTGGTGGCTTCGTCACA
1 ATATCTGT-TCTGGTGGCCTAGCCACA
92349628 ATATCTG
1 ATATCTG
92349635 GCAGCCTCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGGCCTAGCCACA
Found at i:92355464 original size:27 final size:27
Alignment explanation
Indices: 92355430--92355629 Score: 265
Period size: 27 Copynumber: 7.4 Consensus size: 27
92355420 TGGATAAGTT
*
92355430 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
92355457 GTAGAATTATCGAGATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
92355484 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
92355511 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
92355538 ATAGAATTACCAAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
92355565 GTAGAAATACCGAAATACCTCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
92355592 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
92355619 GTAAAATTACC
1 GTAGAATTACC
92355630 ATTTTTCCCG
Statistics
Matches: 150, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 150 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:92357526 original size:40 final size:40
Alignment explanation
Indices: 92357429--92357576 Score: 190
Period size: 40 Copynumber: 3.6 Consensus size: 40
92357419 CAAATTCTCT
** *
92357429 CACACTAAGTGCCAATACATAGCCGAAGCTAT-TTTAATATCA
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATCTCGAAT-T-G
92357471 CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATTG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATTG
* * * *
92357511 CACACTAAATGCCATACATAGCCAAAGTTATCTCGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATTG
*
92357551 TACACTAAGTGCCATACATAGCCGAA
1 CACACTAAGTGCCATACATAGCCGAA
92357577 TTGTAGTCAA
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 59 0.62
41 19 0.20
42 17 0.18
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.23
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATTG
Found at i:92358914 original size:20 final size:20
Alignment explanation
Indices: 92358889--92358926 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
92358879 GGACTAAACC
*
92358889 GATCACATATAAAAATTTTT
1 GATCACATAGAAAAATTTTT
*
92358909 GATCACTTAGAAAAATTT
1 GATCACATAGAAAAATTT
92358927 CATGAAATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.37
Consensus pattern (20 bp):
GATCACATAGAAAAATTTTT
Found at i:92369326 original size:42 final size:42
Alignment explanation
Indices: 92369274--92369357 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
92369264 GGGGCGATAG
* * *
92369274 ACACTGGAGCTGTACCTAGCAAGAGCTCTATCCCGAACTCAA
1 ACACCGGAGCTGTACCTAGCAAAAGCTCTATCCCAAACTCAA
92369316 ACACCGGAGCTGTACCTAGCAAAAGCTCTATCCCAAACTCAA
1 ACACCGGAGCTGTACCTAGCAAAAGCTCTATCCCAAACTCAA
92369358 CTTCACGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.33, C:0.32, G:0.17, T:0.18
Consensus pattern (42 bp):
ACACCGGAGCTGTACCTAGCAAAAGCTCTATCCCAAACTCAA
Found at i:92374566 original size:40 final size:40
Alignment explanation
Indices: 92374511--92374732 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
92374501 TATTCGAATG
*
92374511 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
92374551 ATATCCGGGATAAGTCTCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
92374591 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
92374631 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
92374671 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
92374711 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
92374733 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 14 0.08
40 150 0.90
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:92381526 original size:47 final size:47
Alignment explanation
Indices: 92381475--92381623 Score: 165
Period size: 47 Copynumber: 3.2 Consensus size: 47
92381465 AGTGGTCAAG
* ** *
92381475 TCAAGGTAACTTATCTCGGAGTACCTACATCATGGACCGTAGCCAAA
1 TCAAGGTAACTCATCTCAAAATACCTACATCATGGACCGTAGCCAAA
* * *
92381522 TCAAGGTAACTCCTCTCAAAATACCTATATCATGGCCCGTAGCCAAA
1 TCAAGGTAACTCATCTCAAAATACCTACATCATGGACCGTAGCCAAA
* * * ** *
92381569 TCAAGGTAACTCCTCTCAGAAA-ACCTATATCATGGCCCACATCCAAA
1 TCAAGGTAACTCATCTCA-AAATACCTACATCATGGACCGTAGCCAAA
92381616 TCAAGGTA
1 TCAAGGTA
92381624 TTATTCATAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 88 0.97
48 3 0.03
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (47 bp):
TCAAGGTAACTCATCTCAAAATACCTACATCATGGACCGTAGCCAAA
Found at i:92381615 original size:94 final size:94
Alignment explanation
Indices: 92381449--92381623 Score: 215
Period size: 94 Copynumber: 1.9 Consensus size: 94
92381439 AATTGTTAAG
* * * * * ** *
92381449 TACCTATACCATGGCCAGTGGTCAAGTCAAGGTAACTTATCTCGGAGTACCTACATCATGGACCG
1 TACCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCATCTCAGAAAACCTACATCATGGACCA
*
92381514 TAGCCAAATCAAGGTAACTCCTCTCAAAA
66 CAGCCAAATCAAGGTAACTCCTCTCAAAA
* * * * *
92381543 TACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCAGAAAACCTATATCATGGCCCA
1 TACCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCATCTCAGAAAACCTACATCATGGACCA
*
92381608 CATCCAAATCAAGGTA
66 CAGCCAAATCAAGGTA
92381624 TTATTCATAC
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
94 66 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (94 bp):
TACCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCATCTCAGAAAACCTACATCATGGACCA
CAGCCAAATCAAGGTAACTCCTCTCAAAA
Found at i:92382297 original size:11 final size:11
Alignment explanation
Indices: 92382270--92382298 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
92382260 TCATCAAGCT
92382270 TTCAAAATTCA
1 TTCAAAATTCA
92382281 -TCAAAATTCA
1 TTCAAAATTCA
92382291 TTCAAAAT
1 TTCAAAAT
92382299 CTCAAGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (11 bp):
TTCAAAATTCA
Found at i:92386943 original size:13 final size:15
Alignment explanation
Indices: 92386925--92386956 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
92386915 TTTACTCATC
92386925 AATCTCTT-CCTC-G
1 AATCTCTTGCCTCTG
92386938 AATCTCTTGCCTCTG
1 AATCTCTTGCCTCTG
92386953 AATC
1 AATC
92386957 AGCCTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.19, C:0.34, G:0.09, T:0.38
Consensus pattern (15 bp):
AATCTCTTGCCTCTG
Found at i:92392118 original size:68 final size:64
Alignment explanation
Indices: 92391905--92392156 Score: 206
Period size: 68 Copynumber: 3.8 Consensus size: 64
92391895 TATAGTTTGT
* * * *
92391905 CTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTA-TCTCGTAG
1 CTCTCTTGTACACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATATATTCTCGTAG
* * * * *
92391968 CTCTCTTGT-CTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACATATA-TCCC
1 CTCTCTTGTAC-ACATGGTG---TACA-CTAGTACCACCCATGCGACCTAGCTACATATATTCTC
92392031 GTAG
61 GTAG
** * *
92392035 CTCTCTTGTTTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTG
1 CTCTCTTGTACACATGGTGTACAC-TAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTCG
92392100 TAG
62 TAG
* * * ** *
92392103 CTCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATA
1 CTCTCTTGTACACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATA
92392157 CTATCTGTAT
Statistics
Matches: 150, Mismatches: 26, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 27 0.18
65 2 0.01
66 22 0.15
67 32 0.21
68 48 0.32
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (64 bp):
CTCTCTTGTACACATGGTGTACACTAGTACCACCCATGCGACCTAGCTACATATATTCTCGTAG
Found at i:92396489 original size:30 final size:30
Alignment explanation
Indices: 92396438--92396496 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
92396428 CCCCAAGTAG
* * *
92396438 CCCATATTTTTCATTTATTCACAATTTAAT
1 CCCACATTTTTCAATTATTCACAAATTAAT
92396468 CCCACATTTTTCACATT-TTCACAAATTAA
1 CCCACATTTTTCA-ATTATTCACAAATTAA
92396497 CCTTTAATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (30 bp):
CCCACATTTTTCAATTATTCACAAATTAAT
Found at i:92398628 original size:32 final size:32
Alignment explanation
Indices: 92398592--92398655 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
92398582 TCATATGGGT
* *
92398592 TTGATTCTGATATGGGCTAGGCCCAACTGATA
1 TTGATTCTGAGAAGGGCTAGGCCCAACTGATA
*
92398624 TTGATTCTGAGAAGGGCTAGGCCCAATTGATA
1 TTGATTCTGAGAAGGGCTAGGCCCAACTGATA
92398656 CTGTGATGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (32 bp):
TTGATTCTGAGAAGGGCTAGGCCCAACTGATA
Found at i:92407951 original size:46 final size:45
Alignment explanation
Indices: 92407901--92408076 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
92407891 TGGTTGAGCA
92407901 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
92407947 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
92407994 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
92408040 -CCTAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92408077 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 4 0.04
46 63 0.59
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:92408057 original size:93 final size:93
Alignment explanation
Indices: 92407898--92408068 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
92407888 GGATGGTTGA
*
92407898 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
*
92407963 TGAGTTCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
92407991 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAA-CTCGTTGAG
92408055 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
92408069 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:92418243 original size:40 final size:40
Alignment explanation
Indices: 92418192--92418324 Score: 119
Period size: 39 Copynumber: 3.4 Consensus size: 40
92418182 GAATTCAATC
* *
92418192 ACCAACACAAAGCCTACGGGACTTTAAGCTCAG-ATATAGT
1 ACCAGCACAAAGCCTACGGGACCTTAAG-TCAGAATATAGT
* * * *
92418232 ACCAGTACAAAGCCTGC-AGACCTTAAGTCCGAATATAGT
1 ACCAGCACAAAGCCTACGGGACCTTAAGTCAGAATATAGT
* * * * *
92418271 ACCAGCACGAAGCCTAC-GGATCTTAAGTCCGGATATAAT
1 ACCAGCACAAAGCCTACGGGACCTTAAGTCAGAATATAGT
* *
92418310 TCCAGCACGAAGCCT
1 ACCAGCACAAAGCCT
92418325 GCAGATCTTT
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
38 3 0.04
39 61 0.78
40 14 0.18
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.20
Consensus pattern (40 bp):
ACCAGCACAAAGCCTACGGGACCTTAAGTCAGAATATAGT
Found at i:92418268 original size:39 final size:39
Alignment explanation
Indices: 92418225--92418614 Score: 210
Period size: 39 Copynumber: 9.9 Consensus size: 39
92418215 TTAAGCTCAG
* *
92418225 ATATAGTACCAGTACAAAGCCTGCAGACCTTAAGTCCGA
1 ATATAGTACCAGCACGAAGCCTGCAGACCTTAAGTCCGA
* * * *
92418264 ATATAGTACCAGCACGAAGCCTACGGATCTTAAGTCCGG
1 ATATAGTACCAGCACGAAGCCTGCAGACCTTAAGTCCGA
* * * *
92418303 ATATAATTCCAGCACGAAGCCTGCAGATCTTTAAG-CCCA
1 ATATAGTACCAGCACGAAGCCTGCAGA-CCTTAAGTCCGA
* * * * ** * * * *
92418342 GATACAATTCCAGCATGAAGCCTGTGGGTCTTTAAGCCCGG
1 -ATATAGTACCAGCACGAAGCCTG-CAGACCTTAAGTCCGA
* * * * *
92418383 ATACAATTCCAGCACGAAGCATGCAGACCTTAAGTCCGG
1 ATATAGTACCAGCACGAAGCCTGCAGACCTTAAGTCCGA
* * * * *
92418422 ATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGG
1 ATATAGTACCAGCACGAAGCCTGCAGACCTTAAGTCCGA
* * * * * ** * * * *
92418461 ATACAATTCAAGCA-TATAGCCTGTGGGTCTTTAAGCCCGG
1 ATATAGTACCAGCACGA-AGCCTG-CAGACCTTAAGTCCGA
* * * *
92418501 ATATAATTCCAGCA-TATAGCCTGCAGACCTTAAGTCCGG
1 ATATAGTACCAGCACGA-AGCCTGCAGACCTTAAGTCCGA
* * * *
92418540 ATATAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGA
1 ATATAGTACCAGCACGAAGCCTGCAGACCTTAAGTCCGA
* * * * * *
92418579 ATACAATTCTAGCACGAAGTCTGCGGACCTTAAGTC
1 ATATAGTACCAGCACGAAGCCTGCAGACCTTAAGTC
92418615 TGGATATACA
Statistics
Matches: 293, Mismatches: 51, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
38 1 0.00
39 201 0.69
40 88 0.30
41 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (39 bp):
ATATAGTACCAGCACGAAGCCTGCAGACCTTAAGTCCGA
Found at i:92418362 original size:79 final size:78
Alignment explanation
Indices: 92418241--92418622 Score: 399
Period size: 79 Copynumber: 4.9 Consensus size: 78
92418231 TACCAGTACA
* * * * * * *
92418241 AAGCCTGCAGACCTTAAGTCCGAATATAGTACCAGCACGAAGCCTACGGATCTTAAGTCCGGATA
1 AAGCCTGCAGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
92418306 TAATTCCAGCACG
66 TAATTCCAGCACG
* * * * * * *
92418319 AAGCCTGCAGATCTTTAAGCCCAGATACAATTCCAGCATGAAGCCTGTGGGTCTTTAAGCCCGGA
1 AAGCCTGCAGA-CCTTAAGCCCGGATACAATTCCAGCACGAAGCCTG-CGGACCTTAAGTCCGGA
*
92418384 TACAATTCCAGCACG
64 TATAATTCCAGCACG
* *
92418399 AAGCATGCAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
1 AAGCCTGCAGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
* * *
92418464 CAATTCAAGCA-T
66 TAATTCCAGCACG
** * * * * *
92418476 ATAGCCTGTGGGTCTTTAAGCCCGGATATAATTCCAGCA-TATAGCCTGCAGACCTTAAGTCCGG
1 A-AGCCTG-CAGACCTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGCGGACCTTAAGTCCGG
92418540 ATATAATTCCAGCACG
63 ATATAATTCCAGCACG
* * * * * * *
92418556 AAGCTTGCGGACCTTAAGTCCGAATACAATTCTAGCACGAAGTCTGCGGACCTTAAGTCTGGATA
1 AAGCCTGCAGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
92418621 TA
66 TA
92418623 CATCAAATAT
Statistics
Matches: 247, Mismatches: 50, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
77 1 0.00
78 89 0.36
79 120 0.49
80 37 0.15
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (78 bp):
AAGCCTGCAGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
TAATTCCAGCACG
Found at i:92418503 original size:118 final size:118
Alignment explanation
Indices: 92418272--92418597 Score: 467
Period size: 118 Copynumber: 2.8 Consensus size: 118
92418262 GAATATAGTA
* * * * *
92418272 CCAGCACGAAGCCTACGGATCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCAGATCTTTAA
1 CCAGCACGAAGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGA-CCTTAA
* * *
92418337 GCCCAGATACAATTCCAGCATGAAGCCTGTGGGTCTTTAAGCCCGGATACAATT
65 GTCCGGATACAATTCAAGCATGAAGCCTGTGGGTCTTTAAGCCCGGATACAATT
* *
92418391 CCAGCACGAAGCATGCAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAG
1 CCAGCACGAAGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAG
*
92418456 TCCGGATACAATTCAAGCAT-ATAGCCTGTGGGTCTTTAAGCCCGGATATAATT
66 TCCGGATACAATTCAAGCATGA-AGCCTGTGGGTCTTTAAGCCCGGATACAATT
* *
92418509 CCAGCA-TATAGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACGAAGCTTGCGGACCTTAA
1 CCAGCACGA-AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAA
* * *
92418573 GTCCGAATACAATTCTAGCACGAAG
65 GTCCGGATACAATTCAAGCATGAAG
92418598 TCTGCGGACC
Statistics
Matches: 186, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
117 2 0.01
118 131 0.70
119 53 0.28
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (118 bp):
CCAGCACGAAGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAG
TCCGGATACAATTCAAGCATGAAGCCTGTGGGTCTTTAAGCCCGGATACAATT
Found at i:92421580 original size:12 final size:12
Alignment explanation
Indices: 92421563--92421592 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
92421553 TTAGCATCAC
92421563 ATATATATATGT
1 ATATATATATGT
92421575 ATATATATATGT
1 ATATATATATGT
92421587 ATATAT
1 ATATAT
92421593 TGGATTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (12 bp):
ATATATATATGT
Found at i:92424470 original size:40 final size:40
Alignment explanation
Indices: 92424417--92424554 Score: 102
Period size: 39 Copynumber: 3.5 Consensus size: 40
92424407 GAATTCAATC
* * * * *
92424417 ACCAACACAAAGCCTACGGGAATTTAAG-CTTGGATATAGT
1 ACCAGCACGAAGCCTACGGGAACTTAAGTC-CGAATATAGT
* * *
92424457 ACCAGTACGAAGCCTGC-GGACCTTAAGTCCGAATATAGT
1 ACCAGCACGAAGCCTACGGGAACTTAAGTCCGAATATAGT
* * * * *
92424496 ACCAGCACGAAGGCTAC-GGATCTTAAGTCCGGATACAAT
1 ACCAGCACGAAGCCTACGGGAACTTAAGTCCGAATATAGT
* * *
92424535 TCCAGCATGAAGCCTGCGGG
1 ACCAGCACGAAGCCTACGGG
92424555 TCTTTAAGCG
Statistics
Matches: 77, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
39 61 0.79
40 16 0.21
ACGTcount: A:0.32, C:0.25, G:0.24, T:0.20
Consensus pattern (40 bp):
ACCAGCACGAAGCCTACGGGAACTTAAGTCCGAATATAGT
Found at i:92424493 original size:39 final size:39
Alignment explanation
Indices: 92424458--92424885 Score: 464
Period size: 39 Copynumber: 10.9 Consensus size: 39
92424448 GGATATAGTA
* * * * *
92424458 CCAGTACGAAGCCTGCGGACCTTAAGTCCGAATATAGTA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * *
92424497 CCAGCACGAAGGCTACGGATCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * *
92424536 CCAGCATGAAGCCTGCGGGTCTTTAAG-CGCAGATACAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTC-CGGATACAATT
* * ** * *
92424576 CTAGCACGAAGCCTGTGCTTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGCG-GACCTTAAGTCCGGATACAATT
*
92424616 CCAGCACGAAGCCTGCGGACTTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * * *
92424655 CCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
* * * * *
92424695 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATATAATT
1 CCAGCACGA-AGCCTGC-GGACCTTAAGTCCGGATACAATT
* *
92424735 CCAGCATGAAGCTTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* *
92424774 CCAACACGAAGCTTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* *
92424813 CCGGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
*
92424852 CTAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
92424886 TACATCAAAT
Statistics
Matches: 339, Mismatches: 43, Indels: 14
0.86 0.11 0.04
Matches are distributed among these distances:
39 205 0.60
40 132 0.39
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
Found at i:92424643 original size:119 final size:118
Alignment explanation
Indices: 92424497--92424885 Score: 480
Period size: 119 Copynumber: 3.3 Consensus size: 118
92424487 GAATATAGTA
* * * *
92424497 CCAGCACGAAGGCTACGGATCTTAAGTCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
* * *
92424562 GCGCAGATACAATTCTAGCACGAAGCCTGTGCTTCTTTAAGCCCGGATACAATT
66 GC-CGGATACAATTCCAGCACGAAGCCTGTGCGTCTTTAAGCCCGGATACAATT
* *
92424616 CCAGCACGAAGCCTGCGGACTTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
* * * * *
92424681 GCCCGGATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATATAATT
66 G-CCGGATACAATTCCAGCACGA-AGCCTGTGCGTCTTTAAGCCCGGATACAATT
* * * * * *
92424735 CCAGCATGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAACACGAAGCTTGC-GGACCTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
* * * *
92424799 GTCCGGATACAATTCCGGCACGAAG-CT-TGCGGACCTTAAGTCCGGATACAATT
66 G-CCGGATACAATTCCAGCACGAAGCCTGTGC-GTCTTTAAGCCCGGATACAATT
*
92424852 CTAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
92424886 TACATCAAAT
Statistics
Matches: 231, Mismatches: 35, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
116 1 0.00
117 51 0.22
118 27 0.12
119 151 0.65
120 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (118 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
GCCGGATACAATTCCAGCACGAAGCCTGTGCGTCTTTAAGCCCGGATACAATT
Found at i:92426760 original size:28 final size:28
Alignment explanation
Indices: 92426694--92426850 Score: 206
Period size: 29 Copynumber: 5.5 Consensus size: 28
92426684 CATGAGATTG
* * **
92426694 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
92426723 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
92426751 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
*
92426780 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
92426809 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
92426837 ACAGTAAGTGTGCG
1 GCACTAAGTGTGCG
92426851 GACTTACTAT
Statistics
Matches: 117, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
28 44 0.38
29 73 0.62
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:92426783 original size:57 final size:58
Alignment explanation
Indices: 92426694--92426849 Score: 210
Period size: 57 Copynumber: 2.7 Consensus size: 58
92426684 CATGAGATTG
* * * *
92426694 GCACTAAGTGTGCGGGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATAT-A
1 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCAAGTTTGATTATATAA
* *
92426751 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCAAGTTTGATTATATAA
* *
92426809 GCACTAAGTGTGCGAGTTTGATTATATAA-CAGTAAGTGTGC
1 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGC
92426850 GGACTTACTA
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
57 57 0.64
58 32 0.36
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCAAGTTTGATTATATAA
Found at i:92429961 original size:68 final size:64
Alignment explanation
Indices: 92429851--92430001 Score: 180
Period size: 68 Copynumber: 2.3 Consensus size: 64
92429841 ATACAGATGG
* * * *
92429851 TATGTAGCTAGGTCGCATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACGAGACA
1 TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTAG-ACAAGAGAGCTACGAG--A
92429915 TTA
63 -TA
* *
92429918 TGATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTACGAGAT
1 T-ATGTAGCTAGGTCGCATGGATGATACTGA-GTGCACACCATGTAGACAAGAGAGCTACGAGAT
92429982 A
64 A
92429983 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
92430002 CGTGGTTCCA
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
64 18 0.24
65 3 0.04
66 1 0.01
67 2 0.03
68 50 0.67
69 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:92430041 original size:67 final size:65
Alignment explanation
Indices: 92429896--92430049 Score: 184
Period size: 67 Copynumber: 2.3 Consensus size: 65
92429886 CATCATGTGT
* * * *
92429896 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAG--A-TATGATGTAGCTAGGTCGCATGCGTGATACAATGAGGACACCATG
92429961 TAG
63 TAG
* * *
92429964 ACAAGAGAGCTACGAGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACAGCATG
1 ACAAGAGAGCTACGAGATATGATGTAGCTAGGTCGCATGCGT-GATACAA-TG-AGGACACCATG
92430028 TAG
63 TAG
92430031 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
92430050 AACTGGCTAG
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
64 20 0.26
65 7 0.09
66 3 0.04
67 30 0.39
68 16 0.21
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.21
Consensus pattern (65 bp):
ACAAGAGAGCTACGAGATATGATGTAGCTAGGTCGCATGCGTGATACAATGAGGACACCATGTAG
Found at i:92433436 original size:12 final size:12
Alignment explanation
Indices: 92433419--92433448 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
92433409 AGCATCACAC
92433419 ATATATATATGT
1 ATATATATATGT
92433431 ATATATATATGT
1 ATATATATATGT
92433443 ATATAT
1 ATATAT
92433449 TGGATTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (12 bp):
ATATATATATGT
Found at i:92436352 original size:39 final size:39
Alignment explanation
Indices: 92436309--92436746 Score: 121
Period size: 39 Copynumber: 11.1 Consensus size: 39
92436299 TTAAGCTTAG
*
92436309 ATATAGTATCAGTATGAAGCCTGCGGACCTTAAGTCCGA
1 ATATAGTATCAGCATGAAGCCTGCGGACCTTAAGTCCGA
* * * * *
92436348 ATATAGTACCAGCACGAAGCCTACGGATCTTAAGTCCGG
1 ATATAGTATCAGCATGAAGCCTGCGGACCTTAAGTCCGA
* * ***
92436387 ATACAAT-TCCAGCATGAAGCCTGCGGGTGTTTAAG-CAC-A
1 ATATAGTAT-CAGCATGAAGCCTGC-GGACCTTAAGTC-CGA
* * * * * * *
92436426 GATACAAT-TCCAGCACGAAGCCTATG-GGTCTTTAAGCCCGG
1 -ATATAGTAT-CAGCATGAAGCC--TGCGGACCTTAAGTCCGA
* * * *
92436467 ATACAAT-TCCAGCACGAAGCCTGCGGACCTTAAGTCCGG
1 ATATAGTAT-CAGCATGAAGCCTGCGGACCTTAAGTCCGA
* * ** * * * *
92436506 ATACAAT-TCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAGTAT-CAGCATGAAGCCTGC-GGACCTTAAGTCCGA
* * * * *
92436546 ATATAAT-TCCAGCAT-ATAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAGTAT-CAGCATGA-AGCCTGC-GGACCTTAAGTCCGA
* * * *
92436586 ATATAAT-TCCAGCACGAAGCTTGCGGACCTTAAGTCCGG
1 ATATAGTAT-CAGCATGAAGCCTGCGGACCTTAAGTCCGA
* * * * * *
92436625 ATACAAT-TCCAACACGAAGCTTGTGGACCTTAAGTCC-A
1 ATATAGTAT-CAGCATGAAGCCTGCGGACCTTAAGTCCGA
* * * * *
92436663 GATACAAT-TCCAGCACGAAGCTTGCGGACCTTAAGTCTGA
1 -ATATAGTAT-CAGCATGAAGCCTGCGGACCTTAAGTCCGA
* * * * *
92436703 ATACAAT-TCCAGCACGAAGCCTGCAGACCTTAAGTCCGG
1 ATATAGTAT-CAGCATGAAGCCTGCGGACCTTAAGTCCGA
92436742 ATATA
1 ATATA
92436747 CATCAAATAT
Statistics
Matches: 341, Mismatches: 44, Indels: 28
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 207 0.61
40 128 0.38
41 2 0.01
42 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (39 bp):
ATATAGTATCAGCATGAAGCCTGCGGACCTTAAGTCCGA
Found at i:92436432 original size:40 final size:40
Alignment explanation
Indices: 92436356--92436726 Score: 394
Period size: 39 Copynumber: 9.4 Consensus size: 40
92436346 GAATATAGTA
* * *
92436356 CCAGCACGAAGCCTACGGATC-TTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * * *
92436395 CCAGCATGAAGCCTGCGGGTGTTTAAGCACAGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
**
92436435 CCAGCACGAAGCCTATGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * *
92436475 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* *
92436514 CCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* *
92436554 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATATAATT
1 CCAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * * *
92436594 CCAGCACGAAGCTTGC-GGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * * * * * *
92436633 CCAACACGAAGCTTG-TGGACCTTAAGTCCAGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * * * * *
92436672 CCAGCACGAAGCTTGC-GGACCTTAAGTCTGAATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
92436711 CCAGCACGAAGCCTGC
1 CCAGCACGAAGCCTGC
92436727 AGACCTTAAG
Statistics
Matches: 289, Mismatches: 37, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
39 157 0.54
40 131 0.45
41 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
Found at i:92436500 original size:119 final size:117
Alignment explanation
Indices: 92436356--92436744 Score: 496
Period size: 119 Copynumber: 3.3 Consensus size: 117
92436346 GAATATAGTA
* * * *
92436356 CCAGCACGAAGCCTACGGATCTTAAGTCCGGATACAATTCCAGCATGAAGCCTGCGGGTGTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
92436421 GCACAGATACAATTCCAGCACGAAGCCTATGGGTCTTTAAGCCCGGATACAATT
66 GC-CAGATACAATTCCAGCACGAAGCCT-TGGGTCTTTAAGCCCGGATACAATT
*
92436475 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
* * * * *
92436540 GCCCGGATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATATAATT
66 G-CCAGATACAATTCCAGCACGA-AGCCT-TGGGTCTTTAAGCCCGGATACAATT
* * * * * *
92436594 CCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAACACGAAGCTTG-TGGACCTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
* * * * *
92436658 GTCCAGATACAATTCCAGCACGAAG-CTTGCGGACCTTAAGTCTGAATACAATT
66 G-CCAGATACAATTCCAGCACGAAGCCTTG-GGTCTTTAAGCCCGGATACAATT
*
92436711 CCAGCACGAAGCCTGCAGACCTTAAGTCCGGATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
92436745 TACATCAAAT
Statistics
Matches: 235, Mismatches: 31, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
116 1 0.00
117 51 0.22
118 27 0.11
119 155 0.66
120 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (117 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
GCCAGATACAATTCCAGCACGAAGCCTTGGGTCTTTAAGCCCGGATACAATT
Found at i:92437523 original size:25 final size:23
Alignment explanation
Indices: 92437478--92437532 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
92437468 AGTTAGTAAT
*
92437478 AAAGAAATGGAGAAAAAAAAAGA
1 AAAGAAAAGGAGAAAAAAAAAGA
*
92437501 GAAAGAAAAGGATGAAAACAAAAGA
1 -AAAGAAAAGGA-GAAAAAAAAAGA
92437526 AAA-AAAA
1 AAAGAAAA
92437533 TGTGTCCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 4 0.14
24 13 0.46
25 11 0.39
ACGTcount: A:0.75, C:0.02, G:0.20, T:0.04
Consensus pattern (23 bp):
AAAGAAAAGGAGAAAAAAAAAGA
Found at i:92438058 original size:40 final size:40
Alignment explanation
Indices: 92437915--92438059 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 40
92437905 CGAATGATGT
* * * *
92437915 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
92437955 CCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92437994 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92438035 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
92438060 AATGAGTGGC
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 2 0.02
40 78 0.88
41 9 0.10
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:92438073 original size:40 final size:40
Alignment explanation
Indices: 92437915--92438078 Score: 118
Period size: 40 Copynumber: 4.1 Consensus size: 40
92437905 CGAATGATGT
** * * *
92437915 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTATAA
* * ** *
92437955 CCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTGACTATAA
* ** *
92437994 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* * * *
92438035 CCGGGCTATGTCCCGAAGGCATTTGAATGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
92438075 CCGG
1 CCGG
92438079 TTAAATTCCG
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
39 2 0.02
40 91 0.89
41 9 0.09
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:92438077 original size:80 final size:80
Alignment explanation
Indices: 92437914--92438092 Score: 175
Period size: 80 Copynumber: 2.2 Consensus size: 80
92437904 TCGAATGATG
* *
92437914 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTG
** *
92437979 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* * * * *
92437994 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * * *
92438057 TTGAATGAGTGGCTATA
64 TGGAACGAGTGACTAAA
* *
92438074 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
92438093 TACGTGAGTC
Statistics
Matches: 81, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
79 15 0.19
80 59 0.73
81 7 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTG
GAACGAGTGACTAAA
Found at i:92444637 original size:23 final size:24
Alignment explanation
Indices: 92444611--92444666 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
92444601 AGTTAGTAAT
92444611 AAAGAAATGGA-GAAAA-AAAAGA
1 AAAGAAATGGATGAAAACAAAAGA
*
92444633 GAAAGAAAAGGATGAAAACAAAAGA
1 -AAAGAAATGGATGAAAACAAAAGA
*
92444658 AAAAAAATG
1 AAAGAAATG
92444667 TGTCCATCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 10 0.36
24 12 0.43
25 6 0.21
ACGTcount: A:0.71, C:0.02, G:0.21, T:0.05
Consensus pattern (24 bp):
AAAGAAATGGATGAAAACAAAAGA
Done.