Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 28 of 333
Found at i:7831436 original size:23 final size:23
Alignment explanation
Indices: 7831370--7831436 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
7831360 TATAAGAAAA
*
7831370 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
7831390 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
7831413 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
7831436 A
1 A
7831437 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:7831443 original size:17 final size:15
Alignment explanation
Indices: 7831403--7831448 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
7831393 ATATAAATAG
*
7831403 AAATAAAAATATAAT
1 AAATAGAAATATAAT
7831418 AAATAGAAATATAAT
1 AAATAGAAATATAAT
7831433 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
7831449 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:7831458 original size:14 final size:14
Alignment explanation
Indices: 7831441--7831474 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
7831431 ATAATAGTAG
7831441 AAATATAAA-TAGAT
1 AAATA-AAATTAGAT
7831455 AAATAAAATTAGAT
1 AAATAAAATTAGAT
7831469 AAATAA
1 AAATAA
7831475 TAATAGTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 3 0.16
14 16 0.84
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (14 bp):
AAATAAAATTAGAT
Found at i:7831477 original size:29 final size:30
Alignment explanation
Indices: 7831413--7831477 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 30
7831403 AAATAAAAAT
7831413 ATAATAAATAGAAATATAATAATAGTAGAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
*
7831443 AT-ATAAATAGATAA-ATAA-AATTAG-ATAA
1 ATAATAAATAGA-AATATAATAA-TAGTAGAA
7831471 ATAATAA
1 ATAATAA
7831478 TAGTATCAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
28 7 0.23
29 20 0.65
30 4 0.13
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.28
Consensus pattern (30 bp):
ATAATAAATAGAAATATAATAATAGTAGAA
Found at i:7836308 original size:19 final size:20
Alignment explanation
Indices: 7836284--7836325 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
7836274 ATATAATCAA
7836284 AATTTTTAATA-AAATAATC
1 AATTTTTAATACAAATAATC
*
7836303 AATTTTTAATACAATTAATC
1 AATTTTTAATACAAATAATC
7836323 AAT
1 AAT
7836326 CAAATTTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (20 bp):
AATTTTTAATACAAATAATC
Found at i:7840125 original size:16 final size:16
Alignment explanation
Indices: 7840104--7840176 Score: 58
Period size: 16 Copynumber: 4.4 Consensus size: 16
7840094 TTTTGTATTA
7840104 TTTTAATATTAAATAT
1 TTTTAATATTAAATAT
* *
7840120 TTTTAAAATTAAATAA
1 TTTTAATATTAAATAT
* * *
7840136 TATTGATA-TAATCTAT
1 TTTTAATATTAA-ATAT
*
7840152 TTTAAATTAATTAAATAT
1 TTTTAA-T-ATTAAATAT
7840170 TTTTAAT
1 TTTTAAT
7840177 TACATTTCCT
Statistics
Matches: 41, Mismatches: 12, Indels: 7
0.68 0.20 0.12
Matches are distributed among these distances:
15 3 0.07
16 24 0.59
17 2 0.05
18 9 0.22
19 3 0.07
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (16 bp):
TTTTAATATTAAATAT
Found at i:7847545 original size:2 final size:2
Alignment explanation
Indices: 7847538--7847569 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7847528 GTCATTAAAC
7847538 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7847570 ATAAAACGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7848651 original size:24 final size:26
Alignment explanation
Indices: 7848600--7848651 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 26
7848590 CGACAAATTC
* * *
7848600 CCTCTCCTTATCCTTCCTCTCTTTCT
1 CCTCTCCTTATCCCTCCTCTCCTCCT
7848626 CCTC-CCTT-TCCCTCCTCTCCTCCT
1 CCTCTCCTTATCCCTCCTCTCCTCCT
7848650 CC
1 CC
7848652 ACCACATCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 15 0.65
25 4 0.17
26 4 0.17
ACGTcount: A:0.02, C:0.56, G:0.00, T:0.42
Consensus pattern (26 bp):
CCTCTCCTTATCCCTCCTCTCCTCCT
Found at i:7849784 original size:18 final size:18
Alignment explanation
Indices: 7849754--7849796 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
7849744 AAGGGAAAGA
7849754 AAAACAGAAAGG-AGAAG
1 AAAACAGAAAGGAAGAAG
*
7849771 AAAACGAGAGAGGAAGAAG
1 AAAAC-AGAAAGGAAGAAG
7849790 AAGAACA
1 AA-AACA
7849797 ATAGCCTGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 6 0.27
19 8 0.36
20 3 0.14
ACGTcount: A:0.63, C:0.07, G:0.30, T:0.00
Consensus pattern (18 bp):
AAAACAGAAAGGAAGAAG
Found at i:7850956 original size:9 final size:9
Alignment explanation
Indices: 7850942--7850988 Score: 85
Period size: 9 Copynumber: 5.2 Consensus size: 9
7850932 TATAGTTTGA
7850942 TATTCGAAT
1 TATTCGAAT
7850951 TATTCGAAT
1 TATTCGAAT
7850960 TATTCGAAT
1 TATTCGAAT
*
7850969 TATTCGAGT
1 TATTCGAAT
7850978 TATTCGAAT
1 TATTCGAAT
7850987 TA
1 TA
7850989 AAAAACTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.45
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7851406 original size:80 final size:80
Alignment explanation
Indices: 7851314--7851475 Score: 306
Period size: 80 Copynumber: 2.0 Consensus size: 80
7851304 AGAGAGCTAC
*
7851314 AAGTCCCTCTACTAAAAATGTAGCAATTAAATCCCTGGATTTTTAAAATGTAAGCAAATTGGTAA
1 AAGTCCCTCTACTAAAAACGTAGCAATTAAATCCCTGGATTTTTAAAATGTAAGCAAATTGGTAA
7851379 AATCTTTAATATTTT
66 AATCTTTAATATTTT
*
7851394 AAGTCCCTCTACTAAAAACGTAGCAATTAAATCCTTGGATTTTTAAAATGTAAGCAAATTGGTAA
1 AAGTCCCTCTACTAAAAACGTAGCAATTAAATCCCTGGATTTTTAAAATGTAAGCAAATTGGTAA
7851459 AATCTTTAATATTTT
66 AATCTTTAATATTTT
7851474 AA
1 AA
7851476 ACACAAATGG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.36
Consensus pattern (80 bp):
AAGTCCCTCTACTAAAAACGTAGCAATTAAATCCCTGGATTTTTAAAATGTAAGCAAATTGGTAA
AATCTTTAATATTTT
Found at i:7853985 original size:15 final size:15
Alignment explanation
Indices: 7853965--7853998 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7853955 GTTAAAATGA
7853965 ATTTTCTTTCAATTT
1 ATTTTCTTTCAATTT
* *
7853980 ATTTTCTTTTACTTT
1 ATTTTCTTTCAATTT
7853995 ATTT
1 ATTT
7853999 CAATTTATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.71
Consensus pattern (15 bp):
ATTTTCTTTCAATTT
Found at i:7867164 original size:28 final size:28
Alignment explanation
Indices: 7867132--7867225 Score: 93
Period size: 28 Copynumber: 3.4 Consensus size: 28
7867122 CGGTAGGGCC
*
7867132 GACCATATATTATTCAGGTGGAAGAAG-T
1 GACCATATATTATTCAAGTGGAA-AAGCT
**
7867160 GACCATATATTATTCAAGTGTCAAAGCT
1 GACCATATATTATTCAAGTGGAAAAGCT
* * * *
7867188 GACCATATATCACTT-AAGTGGCAGAGCC
1 GACCATATATTA-TTCAAGTGGAAAAGCT
7867216 GACCATATAT
1 GACCATATAT
7867226 AAAGCTAAAC
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
27 3 0.05
28 52 0.91
29 2 0.04
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (28 bp):
GACCATATATTATTCAAGTGGAAAAGCT
Found at i:7869425 original size:14 final size:12
Alignment explanation
Indices: 7869398--7869422 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7869388 GAAATGGGTG
7869398 TAATAAAATATT
1 TAATAAAATATT
7869410 TAATAAAATATT
1 TAATAAAATATT
7869422 T
1 T
7869423 TTAAGTTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATAAAATATT
Found at i:7870675 original size:23 final size:23
Alignment explanation
Indices: 7870645--7870691 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
7870635 ATTGAGTTTG
7870645 TCTAGCTATGGGCATGACACTTA
1 TCTAGCTATGGGCATGACACTTA
7870668 TCTAGCTATGGGCATGACACTTA
1 TCTAGCTATGGGCATGACACTTA
7870691 T
1 T
7870692 GTGCATGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (23 bp):
TCTAGCTATGGGCATGACACTTA
Found at i:7873534 original size:21 final size:20
Alignment explanation
Indices: 7873510--7873561 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
7873500 TTATGCCACA
7873510 TCAGTATTCTTATACTGAATT
1 TCAGTATT-TTATACTGAATT
* *
7873531 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATACTGAATT
*
7873551 TTAGTATTTTA
1 TCAGTATTTTA
7873562 ATTTGGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATACTGAATT
Found at i:7874264 original size:24 final size:24
Alignment explanation
Indices: 7874237--7874289 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
7874227 TCAAATACAA
*
7874237 AAAACCATACTGAGTTTAAACCCC
1 AAAACCATACTGAGTTCAAACCCC
* *
7874261 AAAACCATATTGAGTTCAGACCCC
1 AAAACCATACTGAGTTCAAACCCC
7874285 AAAAC
1 AAAAC
7874290 ATGTATTCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.43, C:0.28, G:0.09, T:0.19
Consensus pattern (24 bp):
AAAACCATACTGAGTTCAAACCCC
Found at i:7880570 original size:23 final size:23
Alignment explanation
Indices: 7880544--7880595 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
7880534 AATTAAAAAG
7880544 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
7880567 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
7880590 ATGAAA
1 ATGAAA
7880596 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:7885023 original size:23 final size:23
Alignment explanation
Indices: 7884997--7885048 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
7884987 AATTAAAAAG
7884997 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
7885020 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
7885043 ATGAAA
1 ATGAAA
7885049 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:7885536 original size:16 final size:16
Alignment explanation
Indices: 7885515--7885546 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7885505 ACAAAAGAGA
*
7885515 AATTCATGCACGTAAG
1 AATTCATGCACATAAG
7885531 AATTCATGCACATAAG
1 AATTCATGCACATAAG
7885547 TCTTGTGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (16 bp):
AATTCATGCACATAAG
Found at i:7901972 original size:13 final size:13
Alignment explanation
Indices: 7901954--7901978 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7901944 AAAGTGCGAG
7901954 CTGTTGAAGACAC
1 CTGTTGAAGACAC
7901967 CTGTTGAAGACA
1 CTGTTGAAGACA
7901979 GTATGCAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (13 bp):
CTGTTGAAGACAC
Found at i:7904163 original size:19 final size:19
Alignment explanation
Indices: 7904139--7904175 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
7904129 TAATTTACGG
7904139 AAAATGATTTACTTTTCTA
1 AAAATGATTTACTTTTCTA
7904158 AAAATGATTTACTTTTCT
1 AAAATGATTTACTTTTCT
7904176 GATGTTTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.11, G:0.05, T:0.49
Consensus pattern (19 bp):
AAAATGATTTACTTTTCTA
Found at i:7906466 original size:22 final size:23
Alignment explanation
Indices: 7906440--7906485 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7906430 CAACCAAACC
7906440 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
7906462 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
7906485 A
1 A
7906486 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:7906491 original size:23 final size:23
Alignment explanation
Indices: 7906447--7906491 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7906437 ACCAATTCAA
*
7906447 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
7906470 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
7906492 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:7915326 original size:26 final size:26
Alignment explanation
Indices: 7915297--7915358 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 26
7915287 TTTCATCTTC
7915297 TTTCTTCTTATTAAGAACAGAACTGA
1 TTTCTTCTTATTAAGAACAGAACTGA
7915323 --T-TTCTTATTAAGAACAGAACTGA
1 TTTCTTCTTATTAAGAACAGAACTGA
*
7915346 TTCCTTC-TATTAA
1 TTTCTTCTTATTAA
7915359 TCCCTGAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
23 22 0.69
24 1 0.03
25 6 0.19
26 3 0.09
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (26 bp):
TTTCTTCTTATTAAGAACAGAACTGA
Found at i:7915330 original size:23 final size:23
Alignment explanation
Indices: 7915301--7915347 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
7915291 ATCTTCTTTC
7915301 TTCTTATTAAGAACAGAACTGAT
1 TTCTTATTAAGAACAGAACTGAT
7915324 TTCTTATTAAGAACAGAACTGAT
1 TTCTTATTAAGAACAGAACTGAT
7915347 T
1 T
7915348 CCTTCTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (23 bp):
TTCTTATTAAGAACAGAACTGAT
Found at i:7916106 original size:19 final size:19
Alignment explanation
Indices: 7916084--7916132 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
7916074 AAATATTAAT
7916084 ATAATAAATTTTGAAA-AA
1 ATAATAAATTTTGAAACAA
*
7916102 CATAA-AAA-TTAGAAACCAA
1 -ATAATAAATTTTGAAA-CAA
7916121 ATAATAAATTTT
1 ATAATAAATTTT
7916133 CAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 7
0.73 0.06 0.21
Matches are distributed among these distances:
17 6 0.25
18 7 0.29
19 9 0.38
20 2 0.08
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (19 bp):
ATAATAAATTTTGAAACAA
Found at i:7916481 original size:21 final size:21
Alignment explanation
Indices: 7916449--7916490 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7916439 TATAAGCAAC
*
7916449 ATAATGAAAAATAATTGATAG
1 ATAATGAAAAATAATTAATAG
*
7916470 ATAAT-AATAAATGATTAATAG
1 ATAATGAA-AAATAATTAATAG
7916491 TAACTAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.31
Consensus pattern (21 bp):
ATAATGAAAAATAATTAATAG
Found at i:7918361 original size:31 final size:29
Alignment explanation
Indices: 7918293--7918372 Score: 88
Period size: 31 Copynumber: 2.7 Consensus size: 29
7918283 AAATCAAATC
* *
7918293 AAATCAAAATTTCATGTATAAAATTGTATA
1 AAATC-AAAGTTCATGTATAAAATTATATA
*
7918323 AAATCAAAGTTCATGTATAAAATTACATATT
1 AAATCAAAGTTCATGTATAAAATT--ATATA
* *
7918354 AAATCAAAGTCCATATATA
1 AAATCAAAGTTCATGTATA
7918373 GTTTTGAGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 18 0.42
30 5 0.12
31 20 0.47
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.34
Consensus pattern (29 bp):
AAATCAAAGTTCATGTATAAAATTATATA
Found at i:7919443 original size:26 final size:26
Alignment explanation
Indices: 7919400--7919450 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
7919390 AGCAGAACAT
* *
7919400 AACAACCCAACAAGAAAACATATGAG
1 AACAACCCAACAAAAAAACAGATGAG
*
7919426 AACAACCCAATAAAAAAACAGATGA
1 AACAACCCAACAAAAAAACAGATGA
7919451 TTAACTGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.61, C:0.22, G:0.10, T:0.08
Consensus pattern (26 bp):
AACAACCCAACAAAAAAACAGATGAG
Found at i:7922335 original size:26 final size:25
Alignment explanation
Indices: 7922281--7922331 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
7922271 CTTCGAGTTG
7922281 AATTTTAAAACTTGAATAATTTAAAT
1 AATTTTAAAACTTGAATAA-TTAAAT
*
7922307 AATTTTAACAACTTGATTAA-TAAAT
1 AATTTTAA-AACTTGAATAATTAAAT
7922332 TAATGTAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.22
26 8 0.35
27 10 0.43
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (25 bp):
AATTTTAAAACTTGAATAATTAAAT
Found at i:7923302 original size:11 final size:11
Alignment explanation
Indices: 7923264--7923302 Score: 51
Period size: 11 Copynumber: 3.3 Consensus size: 11
7923254 TCAGACCAAC
7923264 AAACCAAAAAT
1 AAACCAAAAAT
7923275 AAACCCAAACTAAT
1 AAA-CCAAA--AAT
7923289 AAACCAAAAAT
1 AAACCAAAAAT
7923300 AAA
1 AAA
7923303 ATCCAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 9 0.36
12 5 0.20
13 5 0.20
14 6 0.24
ACGTcount: A:0.69, C:0.21, G:0.00, T:0.10
Consensus pattern (11 bp):
AAACCAAAAAT
Found at i:7923315 original size:25 final size:25
Alignment explanation
Indices: 7923264--7923312 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
7923254 TCAGACCAAC
*
7923264 AAACCAAAAATAAACCCAAACTAAT
1 AAACCAAAAATAAACCCAAAATAAT
*
7923289 AAACCAAAAATAAAATCCAAAATA
1 AAACCAAAAAT-AAACCCAAAATA
7923313 TAATAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.67, C:0.20, G:0.00, T:0.12
Consensus pattern (25 bp):
AAACCAAAAATAAACCCAAAATAAT
Found at i:7923613 original size:15 final size:15
Alignment explanation
Indices: 7923595--7923676 Score: 53
Period size: 15 Copynumber: 5.3 Consensus size: 15
7923585 GCAAAATACA
7923595 AAAAAACAAAGAAGG
1 AAAAAACAAAGAAGG
*
7923610 AAAAAACAAAAAAAGAAGC
1 AAAAAAC----AAAGAAGG
* *
7923629 AGAAAACAAA-AAGCA
1 AAAAAACAAAGAAG-G
7923644 AAAAAACAAAGAA-G
1 AAAAAACAAAGAAGG
*
7923658 AAACAAACAGAGAA-G
1 AAA-AAACAAAGAAGG
7923673 AAAA
1 AAAA
7923677 TCGAACGGGC
Statistics
Matches: 54, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
14 7 0.13
15 32 0.59
16 2 0.04
19 13 0.24
ACGTcount: A:0.76, C:0.10, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAACAAAGAAGG
Found at i:7923626 original size:19 final size:19
Alignment explanation
Indices: 7923597--7923640 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
7923587 AAAATACAAA
*
7923597 AAAACAAAGAAGGAAAAAAC
1 AAAA-AAAGAAGCAAAAAAC
*
7923617 AAAAAAAGAAGCAGAAAAC
1 AAAAAAAGAAGCAAAAAAC
7923636 AAAAA
1 AAAAA
7923641 GCAAAAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.77, C:0.09, G:0.14, T:0.00
Consensus pattern (19 bp):
AAAAAAAGAAGCAAAAAAC
Found at i:7924648 original size:17 final size:18
Alignment explanation
Indices: 7924626--7924659 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7924616 TATTTATTTA
7924626 TTTTTATTTT-CTTTTTG
1 TTTTTATTTTACTTTTTG
7924643 TTTTTATTTTACTTTTT
1 TTTTTATTTTACTTTTT
7924660 AAACTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.09, C:0.06, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTTATTTTACTTTTTG
Found at i:7924931 original size:20 final size:22
Alignment explanation
Indices: 7924892--7924931 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
7924882 TATGTCATTT
*
7924892 TATTTTAAAATTTTACATATCA
1 TATTTTAAAATTTCACATATCA
7924914 TATTTT-AAA-TTCACATAT
1 TATTTTAAAATTTCACATAT
7924932 TAAGTAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 3 0.18
22 6 0.35
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTTTAAAATTTCACATATCA
Found at i:7925056 original size:24 final size:23
Alignment explanation
Indices: 7925001--7925056 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
7924991 TCAAATCGTA
7925001 TTATTATTATTTACCTTAAGTTT
1 TTATTATTATTTACCTTAAGTTT
* *
7925024 ATATATATTATTTA-CTTGAGGATTT
1 TTAT-TATTATTTACCTT-AAG-TTT
7925049 TTATTATT
1 TTATTATT
7925057 TATTCGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
23 6 0.22
24 15 0.56
25 6 0.22
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (23 bp):
TTATTATTATTTACCTTAAGTTT
Found at i:7928939 original size:20 final size:20
Alignment explanation
Indices: 7928914--7928954 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
7928904 TTTTTAAATT
7928914 TTTTTATACA-TTTTTTAGAA
1 TTTTTATA-ATTTTTTTAGAA
7928934 TTTTTATAATTTTTTTAGAA
1 TTTTTATAATTTTTTTAGAA
7928954 T
1 T
7928955 ATAAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTTTATAATTTTTTTAGAA
Found at i:7928977 original size:18 final size:19
Alignment explanation
Indices: 7928954--7928991 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
7928944 TTTTTTAGAA
7928954 TATAAAT-TTTGAAATTTT
1 TATAAATGTTTGAAATTTT
*
7928972 TATAAATGTTTTAAATTTT
1 TATAAATGTTTGAAATTTT
7928991 T
1 T
7928992 TGTATCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TATAAATGTTTGAAATTTT
Found at i:7928992 original size:9 final size:9
Alignment explanation
Indices: 7928904--7928992 Score: 52
Period size: 10 Copynumber: 8.6 Consensus size: 9
7928894 AAAATTTTAA
7928904 TTTTTAAATT
1 TTTTTAAA-T
7928914 TTTTTATACAT
1 TTTTTA-A-AT
7928925 TTTTTAGAAT
1 TTTTTA-AAT
*
7928935 TTTTATAATT
1 TTTT-TAAAT
7928945 TTTTTAGAAT
1 TTTTTA-AAT
7928955 ATAAATTTTGAAAT
1 -T---TTTT-AAAT
7928969 TTTTATAAAT
1 TTTT-TAAAT
*
7928979 GTTTTAAAT
1 TTTTTAAAT
7928988 TTTTT
1 TTTTT
7928993 GTATCTTTTG
Statistics
Matches: 64, Mismatches: 5, Indels: 21
0.71 0.06 0.23
Matches are distributed among these distances:
9 11 0.17
10 30 0.47
11 13 0.20
12 1 0.02
13 1 0.02
14 7 0.11
15 1 0.02
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:7929872 original size:18 final size:18
Alignment explanation
Indices: 7929803--7929864 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 18
7929793 ATTAATCTTC
7929803 AAAAATTTAAAATATCTATA-
1 AAAAA-TTAAAA-AT-TATAT
7929823 AAAAATTACAGAAA--ATAT
1 AAAAATTA-A-AAATTATAT
7929841 AAAAATTAAAAATTATAT
1 AAAAATTAAAAATTATAT
7929859 AAAAAT
1 AAAAAT
7929865 GTTAAATTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
16 3 0.08
17 4 0.11
18 18 0.49
19 3 0.08
20 7 0.19
21 2 0.05
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (18 bp):
AAAAATTAAAAATTATAT
Found at i:7933701 original size:15 final size:16
Alignment explanation
Indices: 7933670--7933704 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
7933660 ATTTTATCTA
7933670 AATTTATTTAAATTTT
1 AATTTATTTAAATTTT
*
7933686 AATTTA-TTATATTTT
1 AATTTATTTAAATTTT
7933701 AATT
1 AATT
7933705 GTCAAAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
AATTTATTTAAATTTT
Found at i:7935742 original size:16 final size:16
Alignment explanation
Indices: 7935723--7935761 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7935713 TTATTTCAAG
*
7935723 TTTAGATGAATTTAAA
1 TTTAGATCAATTTAAA
*
7935739 TTTAAATCAATTTAAA
1 TTTAGATCAATTTAAA
*
7935755 TTAAGAT
1 TTTAGAT
7935762 TCATCAAATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (16 bp):
TTTAGATCAATTTAAA
Found at i:7939225 original size:7 final size:7
Alignment explanation
Indices: 7939189--7939222 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
7939179 TTTAAATTAT
7939189 TTATATG
1 TTATATG
7939196 TTATATG
1 TTATATG
7939203 TTATATG
1 TTATATG
* *
7939210 CTATATA
1 TTATATG
7939217 TTATAT
1 TTATAT
7939223 ATTTTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (7 bp):
TTATATG
Found at i:7940393 original size:14 final size:14
Alignment explanation
Indices: 7940376--7940402 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7940366 ATATTTGAAA
7940376 AAAATTTAAAAAAT
1 AAAATTTAAAAAAT
7940390 AAAATTTAAAAAA
1 AAAATTTAAAAAA
7940403 AGTATATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAATTTAAAAAAT
Found at i:7941366 original size:22 final size:21
Alignment explanation
Indices: 7941334--7941383 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
7941324 TTTTTGGCTA
7941334 CTATTTTTTGTTGTTTTAATG
1 CTATTTTTTGTTGTTTTAATG
* *
7941355 TTATTTTATTGTTGTTTTAGTG
1 CTATTTT-TTGTTGTTTTAATG
7941377 CTATTTT
1 CTATTTT
7941384 CTTATTCGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.14, C:0.04, G:0.14, T:0.68
Consensus pattern (21 bp):
CTATTTTTTGTTGTTTTAATG
Found at i:7944490 original size:16 final size:16
Alignment explanation
Indices: 7944469--7944536 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
7944459 TTTGGTTCGC
7944469 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
7944485 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAGG
7944501 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
7944517 TGTATTAGATTAAAGG
1 TGTATTGGATTAGAGG
7944533 TGTA
1 TGTA
7944537 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:7944860 original size:157 final size:157
Alignment explanation
Indices: 7944666--7944975 Score: 548
Period size: 157 Copynumber: 2.0 Consensus size: 157
7944656 CCCTTAGCAT
*
7944666 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
7944731 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
7944796 TTTAATAAAATTCTTAATAATTACCAG
131 TTTAATAAAATTCTTAATAATTACCAG
* * *
7944823 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
7944888 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
7944953 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
7944976 ATATTCTTAT
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 145 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (157 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAG
Found at i:7944972 original size:82 final size:81
Alignment explanation
Indices: 7944729--7944978 Score: 186
Period size: 76 Copynumber: 3.1 Consensus size: 81
7944719 TATTATTATC
* * *
7944729 AATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTAT-ATTAAAATATAT
7944794 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
* * * * *
7944811 AATAATTACCAGA-AATTT-GT--T-TTGGT-AA-ATTATTATTGTT--AT-TGTTAT-TTAAAT
1 AATAA-TA--A-ATAATTTAATCATATT--TAAACATAATTATTATTAAATATATTATATTAAAA
* * * * *
7944865 TTTGATAAGATT-AT-TAA-TATG
60 TAT-ATAA-TTTAATAAAATTCTT
7944886 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATA-TTAAAATATAT
7944951 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
*
7944968 AATAATTAATA
1 AATAATAAATA
7944979 TTCTTATATG
Statistics
Matches: 121, Mismatches: 24, Indels: 46
0.63 0.13 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 3 0.02
75 10 0.08
76 21 0.17
77 6 0.05
78 8 0.07
79 8 0.07
80 6 0.05
81 21 0.17
82 20 0.17
83 3 0.02
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (81 bp):
AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATATTAAAATATATA
ATTTAATAAAATTCTT
Found at i:7945049 original size:157 final size:155
Alignment explanation
Indices: 7944712--7945033 Score: 349
Period size: 157 Copynumber: 2.0 Consensus size: 155
7944702 TTAAATTTTA
* * * *
7944712 ATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * * * * * *
7944777 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTACCAGAAATTTGTTTTGGTAAATT
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTAGTAAATC
* * * * *
7944842 ATTATTGTTATTGTTATTTAAATTTTG
131 ATAATTATTATTGATATATAAA--TAG
* *
7944869 ATAAGATTATTAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * ** *
7944934 TTATACTTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTATTCA
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTAGT-A
7944999 AATCATAATATATTATATGATACTATAAA-AG
127 AATCATAAT-TATTAT-TGATA-TATAAATAG
7945030 ATAA
1 ATAA
7945034 TTTGAAATAA
Statistics
Matches: 137, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
157 102 0.74
159 4 0.03
160 4 0.03
161 13 0.09
162 5 0.04
163 4 0.03
164 5 0.04
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (155 bp):
ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTAGTAAATC
ATAATTATTATTGATATATAAATAG
Found at i:7949904 original size:38 final size:38
Alignment explanation
Indices: 7949850--7949923 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
7949840 TTAAATCACA
*
7949850 TACTATATAACTTGGGGGTTTGCATACTATGTCATATG
1 TACTATATAACATGGGGGTTTGCATACTATGTCATATG
7949888 TACTATATAACATGGGGGTTTGCATACTATGTCATA
1 TACTATATAACATGGGGGTTTGCATACTATGTCATA
7949924 CCATATAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (38 bp):
TACTATATAACATGGGGGTTTGCATACTATGTCATATG
Found at i:7949938 original size:34 final size:34
Alignment explanation
Indices: 7949848--7949987 Score: 138
Period size: 34 Copynumber: 4.0 Consensus size: 34
7949838 TATTAAATCA
* *
7949848 CATACTATATAACT-TGGGGGTTTGCATACTATGT
1 CATACCATATAA-TGTGGGGGTTCGCATACTATGT
* ** *
7949882 CATATGTACTATATAACATGGGGGTTTGCATACTATGT
1 C--A--TACCATATAATGTGGGGGTTCGCATACTATGT
* *
7949920 CATACCATATAATGTGGGGGTTCACATACTTTGT
1 CATACCATATAATGTGGGGGTTCGCATACTATGT
**
7949954 CATACCATATAATGTGATGGTTCGCATACTATGT
1 CATACCATATAATGTGGGGGTTCGCATACTATGT
7949988 ATTAAGTGAT
Statistics
Matches: 90, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
34 57 0.63
36 2 0.02
38 31 0.34
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (34 bp):
CATACCATATAATGTGGGGGTTCGCATACTATGT
Found at i:7950374 original size:18 final size:18
Alignment explanation
Indices: 7950351--7950388 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7950341 TTAAAATAGG
7950351 ATTAGGAGTTAG-TTTAAA
1 ATTAGGA-TTAGATTTAAA
*
7950369 ATTAGGATTTGATTTAAA
1 ATTAGGATTAGATTTAAA
7950387 AT
1 AT
7950389 AATGACTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (18 bp):
ATTAGGATTAGATTTAAA
Found at i:7957640 original size:137 final size:137
Alignment explanation
Indices: 7957381--7957645 Score: 397
Period size: 137 Copynumber: 1.9 Consensus size: 137
7957371 AATCGGTTAA
* * * * *
7957381 TCTATTTTTAAAAACGTCAGATTTTTCTTTTGGAATTTCACTTCTCATTTGAAAAAAGTGAAACA
1 TCTACTTTTAAAAACATCAGATTTTTCTTTTGGAATTTCACGTATCATTGGAAAAAAGTGAAACA
* * * *
7957446 CTTTGCAATACATAGTTGCATGCAGTGTAATATTATTGCCTCGTGTTGTTCTGCATTGAAAGACG
66 CTTTGCAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTGCATTGAAAGACG
7957511 ACTATAT
131 ACTATAT
* * *
7957518 TCTACTTTTAAAAACATTAGATTTTTCTTTTGGAATTTCTCGTATCACTTGGCAAAAA-TGAAAC
1 TCTACTTTTAAAAACATCAGATTTTTCTTTTGGAATTTCACGTATCA-TTGGAAAAAAGTGAAAC
*
7957582 ACTTTGCAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTTCATTGAAAGA
65 ACTTTGCAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTGCATTGAAAGA
7957646 TGGCAATATT
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
137 106 0.93
138 8 0.07
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (137 bp):
TCTACTTTTAAAAACATCAGATTTTTCTTTTGGAATTTCACGTATCATTGGAAAAAAGTGAAACA
CTTTGCAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTGCATTGAAAGACG
ACTATAT
Found at i:7957906 original size:156 final size:156
Alignment explanation
Indices: 7957518--7961050 Score: 4559
Period size: 156 Copynumber: 22.8 Consensus size: 156
7957508 ACGACTATAT
* * *
7957518 TCTACTTTTAAAAACATTAGATTTTTCTTTTGGAATTTCTCGTATCACTTGGCAAAAATGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
7957583 CTTTGCAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTTCATTGAAAGATG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * * *
7957648 GCAATATTTTCTATAAAATTGACTAA
131 GCGATATTTTCTATAAAATCGGCGAA
*
7957674 TCT-CTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTTTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * *
7957738 CTTTGCAATACATAGTTGCATGCAATGTAACGTTATTGTCC-CGTGTTGTTCTTCACTGAAAGAT
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTG-CCTCGTGTTGTTCTTCACTGAAAGAC
** * *
7957802 GGTAATATTTTCTATAAAATTGGCAAA
130 GGCGATATTTTCTATAAAATCGGCGAA
7957829 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
7957894 CTTTGCAATACATAGTTGCATGCAATGTAACGTTATTGTCC-CGCGTTGTTCTCCACTGAAAAAC
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTG-CCTCGTGTTGTTCTTCACTGAAAGAC
** **
7957958 GATGATATTTTCTATAAAA-CTGGTAAA
130 GGCGATATTTTCTATAAAATC-GGCGAA
* *
7957985 TCTACTTTTAAAGACATTAGACTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAAAA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * *
7958050 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTTACTGAAAAATG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
7958115 ACGATATTTTCTATAAAAT-GGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * *
7958140 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTATTATTACTTGGCAAAAGCGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * *
7958205 CTTTGTAATACATAGTTGCATGCAGGGTAACATTATTGCCTCG-GTTGTTCTTCA-TTAAATGAC
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAA-GAC
* * * **
7958268 GACGATATTTTCTGTAAAACCGGTTAA
130 GGCGATATTTTCTATAAAATCGGCGAA
* *
7958295 TCTACTTTTAAAGACATTAGGTTTTTCTTTTGGAATTTCTCTTATCATTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
** * *
7958360 CTTTGCAATACATAGTTGCATTAAGTGTAACATTATTGCCTCGTGTTATTCTTCACTAAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
7958425 ACGAAATTTTCTATAAAATCGACGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * *
7958451 TCTACTTTTAAAGACATTAGATTTTTCTTTTGCAATTTATCTTATCACTTGGCCAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * * *
7958516 CTTTGTAATACATAGTTACATGCAATGTAACATTATTGCCTC-TGTTCTTCTTCACTGAAAAACA
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
7958580 GTGATATTTTCTATAAAA-CGGGCGAA
131 GCGATATTTTCTATAAAATC-GGCGAA
* *
7958606 CCTACTTTTAAAAACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * ** * *
7958671 CTTTGCAATACATAGTTGCATGTAGTGTAACATTATTGCTTTATGTTGTTCTTCATTGAAAAAAC
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTG-AAAGAC
* *
7958736 TGCGATATTTTCTATAAAATTGGCGAA
130 GGCGATATTTTCTATAAAATCGGCGAA
* *
7958763 TCTACTTTTAAAGACATTAGATTTTTATTTTGGAATTTCTCTTATTACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
** * * * * * *
7958828 CTTTAAAATACATAGTTGTATGTAGTGTAACATTATTGCCTCGCGTTGTTCTGCATTGAAAGACA
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* *
7958893 GCAATATTTTCTATAAAATCGGCAAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7958919 TATACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGAAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
7958984 CTTTGTAATACATAGTTGCATGTAGTGTAGCATTATTGCCTCGTGTTGTTCTACATTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
7959049 ACGATATTTTCTATAAAATCGACCAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7959075 TCTACTTTTAAAGACATTAGATTTTTTTTTTGAAATTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
*
7959140 CTTTGCAATACATAGTTGCATTCAGTGTAACATTATTGCCTCGTGTTGTTCTGT-A-TGGAAAGA
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCT-TCACT-GAAAGA
** *
7959203 CGGTTATATTTTCTATAAAATCGTCGAA
129 CGGCGATATTTTCTATAAAATCGGCGAA
* * *
7959231 TCTACTTTTAAATACATTAGGTTTTTCTTTTGGAATTTCGCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* *
7959296 CTTTGCAATACATAGTTGCATTCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACA
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
** * *
7959361 ATGATATTTTTTATAAAATCGACGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * * * *
7959387 TCTACTTTTAAAGACATTAGAATGTTATTTTGGAGTTTCTCTTATCACTTAGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
*
7959452 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTACACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
7959517 ACTATATTTTCTATAAAATTGGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7959543 TCTACTTTTAAAGACATTAGATTTTTCTTTTGAAATTTCTCTTATCACTTGGCAAAAATGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* *
7959608 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACT
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
7959673 GCGATATTTTCTATAAAATTGACGTA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7959699 TCTACATTTAAAGATATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAA-TGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
7959763 CTTTGCAATACATAGTTGGACT-CAATGTAACATTACTACCTCGTGTTGTTCTACACTGAAAGAC
66 CTTTGCAATACATAGTTGCA-TGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGAC
*
7959827 AGCGATATTTTCTATAAAATCGGCGAA
130 GGCGATATTTTCTATAAAATCGGCGAA
* *
7959854 TCTACTTTTAAAGACATTAGA-TTGTCTTTAT-GAATTTCTCTTATCACTTGGAAAAAGTGAAAC
1 TCTACTTTTAAAGACATTAGATTTTTCTTT-TGGAATTTCTCTTATCACTTGGCAAAAGTGAAAC
* ** * * *** * * *
7959917 ACTTTGCAATACATAGTTGTATGCAGCATAACATGTGTAGAAAGACAGCGATATT-TTCTAC--A
65 ACTTTGCAATACATAGTTGCATGCAGTGTAACAT-TATTG--CCTC-GTGTTGTTCTTC-ACTGA
* * * * * *
7959979 AA-ATCGACGA-ATATACTTTTAAA--GAC--A
125 AAGA-CGGCGATATTTTCTATAAAATCGGCGAA
* * * * * * * ** **
7960006 T-TAGATTTT----TCTTTTGGA-ATTTCTCTT---A--TCACTTGGAAAAAGT-G---AA---A
1 TCTA-CTTTTAAAGAC-ATTAGATTTTTCTTTTGGAATTTCTCTT--ATCACTTGGCAAAAGTGA
* * * * * *
7960053 CAC-TT-TGCAATACAAAGTTGCATGTAGTGTAACATTATTGCCTTGTGTTGTTATGT-ACTGAA
62 AACACTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCT-TCACTGAA
*
7960115 AGACGGTGATATTTTCTATAAAATCGGCGAA
126 AGACGGCGATATTTTCTATAAAATCGGCGAA
* * *
7960146 TCTACTTTTAAAGACATCAGGTTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAATTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
7960211 CTTTGCAATACATAGTTACATGTAGTATAACATTATTGCCTCATGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
7960276 GCGATATTTTCTATAAAATCGACGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7960302 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATATCTCTCATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
7960367 CTTTACAAAACATAATTGCATGCAGTGTAACATTATTGCTTCGTGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* *
7960432 AC-ATTATTTTCTATAAAATTGGCGAA
131 GCGA-TATTTTCTATAAAATCGGCGAA
* *
7960458 CCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCCCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * **
7960523 CTTTACAATACATAGTTGCATTCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGGTG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
7960588 GCGATATTTTCTATAAAATCGGTGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * * *
7960614 TCTACTTTTAAATACATTAGATTTTTCTTTTCGAATATCTCTTTATCACTTGGCAAAAGTGAAAT
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTC-TTATCACTTGGCAAAAGTGAAAC
* * * * *
7960679 ACTTTGTAATACATAGTTGTATGCAGTGTATCATTATTGCCTTGTGTTGTTCTTCACTGAAAGAT
65 ACTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGAC
7960744 GGCGATATTTTCTATAAAATCGGCGAA
130 GGCGATATTTTCTATAAAATCGGCGAA
* * *
7960771 TCTACTTTGAAAGACATTAGATTTTTCTTTTAGAATTTCTCTTATCACTTGGGAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
7960836 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * * *
7960901 ACAATATTTTTTATAAAATTGGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * **
7960927 TATACTTTTAAGGACATTAGATTTTT-TTTTGGAATTTCTCTTATCACTTGGCAAATTTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * *
7960991 CTTTGCAATGCATAGTTGCATTCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAA
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAA
7961051 CAAGTAGCTA
Statistics
Matches: 2966, Mismatches: 346, Indels: 131
0.86 0.10 0.04
Matches are distributed among these distances:
133 7 0.00
134 1 0.00
135 8 0.00
136 13 0.00
137 25 0.01
138 3 0.00
139 3 0.00
140 6 0.00
141 2 0.00
142 2 0.00
143 2 0.00
144 13 0.00
145 1 0.00
146 4 0.00
147 4 0.00
148 3 0.00
149 14 0.00
151 4 0.00
152 6 0.00
153 4 0.00
154 67 0.02
155 723 0.24
156 1745 0.59
157 296 0.10
158 3 0.00
159 7 0.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (156 bp):
TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
GCGATATTTTCTATAAAATCGGCGAA
Found at i:7960072 original size:137 final size:136
Alignment explanation
Indices: 7959820--7960072 Score: 436
Period size: 137 Copynumber: 1.9 Consensus size: 136
7959810 GTTCTACACT
* * *
7959820 GAAAGACAGCGATATTTTCTATAAAATCGGCGAATCTACTTTTAAAGACATTAGATTGTCTTTAT
1 GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGATTGTCTTTAT
*
7959885 GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACATAGTTGTATGCAGCATAACA
66 GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTGTATGCAGCATAACA
7959950 TGTGTA
131 TGTGTA
*
7959956 GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGATTTTTCTTT-
1 GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGA-TTGTCTTTA
7960020 TGGAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTG
65 T-GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTG
7960073 CATGTAGTGT
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
136 53 0.48
137 57 0.52
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (136 bp):
GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGATTGTCTTTAT
GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTGTATGCAGCATAACA
TGTGTA
Found at i:7963431 original size:125 final size:125
Alignment explanation
Indices: 7963295--7963519 Score: 353
Period size: 125 Copynumber: 1.8 Consensus size: 125
7963285 CAAAAATTAA
* *
7963295 ATCAAGTATAGGATGTCACATTTAGTGATATTATTGTAATTT-AGATTTCTTTCCATTTTTAAAA
1 ATCAAGTATAGGATGTCACATTTAGTGATATCATTGTAATTTGA-ATTTATTTCCATTTTTAAAA
* * *
7963359 TTATACATTTTGATCTTAAAGAAATTAACTACATATTTAAATCTGAATATTCAACAATCAG
65 TTATACACTTCGATCTTAAAGAAACTAACTACATATTTAAATCTGAATATTCAACAATCAG
* **
7963420 ATCAAGTATAGGATGTCATATTTAGTGATATCATTGTAATTTGAATTTATTTTTATTTTTAAAAT
1 ATCAAGTATAGGATGTCACATTTAGTGATATCATTGTAATTTGAATTTATTTCCATTTTTAAAAT
*
7963485 TATACACTTCGATCTTAAATAAACTAACTACATAT
66 TATACACTTCGATCTTAAAGAAACTAACTACATAT
7963520 GAAATTGCCA
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
125 89 0.99
126 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (125 bp):
ATCAAGTATAGGATGTCACATTTAGTGATATCATTGTAATTTGAATTTATTTCCATTTTTAAAAT
TATACACTTCGATCTTAAAGAAACTAACTACATATTTAAATCTGAATATTCAACAATCAG
Found at i:7965763 original size:30 final size:29
Alignment explanation
Indices: 7965728--7965794 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
7965718 AATATTAATA
7965728 TAAAATTTAAATTTATTATTATA-ATTTTT
1 TAAAATTT-AATTTATTATTATATATTTTT
** *
7965757 TGAAAATATTTTTTTATTTTTATATATTTTT
1 T-AAAAT-TTAATTTATTATTATATATTTTT
7965788 TAAAATT
1 TAAAATT
7965795 ATTATATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
29 2 0.06
30 21 0.66
31 9 0.28
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (29 bp):
TAAAATTTAATTTATTATTATATATTTTT
Found at i:7965785 original size:18 final size:19
Alignment explanation
Indices: 7965762--7965851 Score: 69
Period size: 18 Copynumber: 4.8 Consensus size: 19
7965752 TTTTTTGAAA
* *
7965762 ATATTTTTT-TATTTTTAT
1 ATATTTTTTAAATTATTAT
7965780 ATATTTTTTAAAATTATTAT
1 ATATTTTTT-AAATTATTAT
* *
7965800 ATATTTTTAAAAATATT-T
1 ATATTTTTTAAATTATTAT
* * * *
7965818 GTGTTTTTTATATTTTTAT
1 ATATTTTTTAAATTATTAT
7965837 AT-TTTTTTAGAATTA
1 ATATTTTTTA-AATTA
7965852 GGATCAAATT
Statistics
Matches: 55, Mismatches: 13, Indels: 7
0.73 0.17 0.09
Matches are distributed among these distances:
18 28 0.51
19 12 0.22
20 15 0.27
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (19 bp):
ATATTTTTTAAATTATTAT
Found at i:7965788 original size:20 final size:20
Alignment explanation
Indices: 7965776--7965851 Score: 70
Period size: 19 Copynumber: 4.0 Consensus size: 20
7965766 TTTTTTATTT
7965776 TTATATATTTTTTAAAATTA
1 TTATATATTTTTTAAAATTA
*
7965796 TTATATA-TTTTTAAAAATA
1 TTATATATTTTTTAAAATTA
* * * *
7965815 TT-TGTGTTTTTT-ATATTT
1 TTATATATTTTTTAAAATTA
*
7965833 TTATAT-TTTTTTAGAATTA
1 TTATATATTTTTTAAAATTA
7965852 GGATCAAATT
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
18 13 0.30
19 23 0.53
20 7 0.16
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (20 bp):
TTATATATTTTTTAAAATTA
Found at i:7965845 original size:10 final size:9
Alignment explanation
Indices: 7965762--7965843 Score: 51
Period size: 9 Copynumber: 9.0 Consensus size: 9
7965752 TTTTTTGAAA
7965762 ATATTTTTT
1 ATATTTTTT
7965771 -TATTTTTAT
1 ATATTTTT-T
7965780 ATATTTTTT
1 ATATTTTTT
* *
7965789 AAAATTATTAT
1 -ATATT-TTTT
*
7965800 ATATTTTTA
1 ATATTTTTT
* * *
7965809 AAAATATTT
1 ATATTTTTT
* *
7965818 GTGTTTTTT
1 ATATTTTTT
7965827 ATA-TTTTT
1 ATATTTTTT
7965835 ATATTTTTT
1 ATATTTTTT
7965844 TAGAATTAGG
Statistics
Matches: 52, Mismatches: 16, Indels: 10
0.67 0.21 0.13
Matches are distributed among these distances:
8 15 0.29
9 19 0.37
10 15 0.29
11 3 0.06
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (9 bp):
ATATTTTTT
Found at i:7968282 original size:19 final size:20
Alignment explanation
Indices: 7968240--7968283 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
7968230 TTTTATGCAC
*
7968240 ATTTTATTTAGTTAAACAAG
1 ATTTTATTTAGTTAAAAAAG
* *
7968260 ATTTTATTT-TTTAAAAAAT
1 ATTTTATTTAGTTAAAAAAG
7968279 ATTTT
1 ATTTT
7968284 TTAAAAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (20 bp):
ATTTTATTTAGTTAAAAAAG
Found at i:7968283 original size:14 final size:14
Alignment explanation
Indices: 7968264--7968292 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7968254 AACAAGATTT
7968264 TATTTTTTAAAAAA
1 TATTTTTTAAAAAA
7968278 TATTTTTTAAAAAA
1 TATTTTTTAAAAAA
7968292 T
1 T
7968293 TAAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTTTTTAAAAAA
Found at i:7968588 original size:18 final size:17
Alignment explanation
Indices: 7968537--7968592 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 17
7968527 TTTTTAGGCC
7968537 TAATTTTTATATATTTTA
1 TAATTTTTA-ATATTTTA
* *
7968555 TGATTTCCT-ATAATTTTA
1 TAATTT-TTAAT-ATTTTA
7968573 TAATTTTTAATGATTTTA
1 TAATTTTTAAT-ATTTTA
7968591 TA
1 TA
7968593 TATAAAATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 3 0.10
18 26 0.87
19 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (17 bp):
TAATTTTTAATATTTTA
Found at i:7968594 original size:28 final size:27
Alignment explanation
Indices: 7968541--7968594 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
7968531 TAGGCCTAAT
*
7968541 TTTTATATATTTTATGATTTCCTATAA
1 TTTTATATATTTTATGATTTCATATAA
*
7968568 TTTTATA-ATTTTTAATGATTTTATATA
1 TTTTATATA-TTTT-ATGATTTCATATA
7968595 TAAAATACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 1 0.04
27 11 0.48
28 11 0.48
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (27 bp):
TTTTATATATTTTATGATTTCATATAA
Found at i:7979974 original size:25 final size:25
Alignment explanation
Indices: 7979946--7979994 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
7979936 ATGCAGGAAT
7979946 GCTCTTAT-GAGCACATA-AACGGGAC
1 GCTCTT-TCGAGC-CATATAACGGGAC
7979971 GCTCTTTCGAGCCATATAACGGGA
1 GCTCTTTCGAGCCATATAACGGGA
7979995 AGTTTATGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (25 bp):
GCTCTTTCGAGCCATATAACGGGAC
Found at i:7980032 original size:25 final size:25
Alignment explanation
Indices: 7979954--7980048 Score: 77
Period size: 25 Copynumber: 3.8 Consensus size: 25
7979944 ATGCTCTTAT
* *
7979954 GAGCACATA-AACGGGACGCTCTTTC
1 GAGC-CATATAACGGGAAGCTCTTGC
* *
7979979 GAGCCATATAACGGGAAG-TTTATGT
1 GAGCCATATAACGGGAAGCTCT-TGC
**
7980004 GAGCTGTATAACGGGAAGCTCTTGC
1 GAGCCATATAACGGGAAGCTCTTGC
* * *
7980029 GAGCCAAATATCGAGAAGCT
1 GAGCCATATAACGGGAAGCT
7980049 TAAGCGAGCT
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
24 6 0.11
25 46 0.85
26 2 0.04
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCTTGC
Found at i:7980058 original size:50 final size:50
Alignment explanation
Indices: 7979963--7980058 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 50
7979953 TGAGCACATA
* * * * * * *
7979963 AACGGGACGCTCTTTCGAGCCATATAACGGGAAGTTTATGTGAGCTGTAT
1 AACGGGAAGCTCTTGCGAGCCAAATAACGAGAAGCTTAAGCGAGCTGTAT
*
7980013 AACGGGAAGCTCTTGCGAGCCAAATATCGAGAAGCTTAAGCGAGCT
1 AACGGGAAGCTCTTGCGAGCCAAATAACGAGAAGCTTAAGCGAGCT
7980059 ATTAATCAGA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 38 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
AACGGGAAGCTCTTGCGAGCCAAATAACGAGAAGCTTAAGCGAGCTGTAT
Found at i:7980195 original size:78 final size:77
Alignment explanation
Indices: 7980029--7980195 Score: 169
Period size: 78 Copynumber: 2.1 Consensus size: 77
7980019 AAGCTCTTGC
* *
7980029 GAGCCAAATATCGAGAAGCTTAAGCGAGCTATTAATCAGAAAGCTCATCAAAGAGCCTTTAATCG
1 GAGCC-AATATCGAGAAGCTTAAGAGAGCTAATAATCAGAAAGCTCATCAAAGAGCCTTTAATCG
* * *
7980094 AAAAGGTTCGACC
65 AAAAGCTCCGACA
* * * * * *
7980107 GAGCCAATATCGGGAAGCTCT-AGAGAGCTAAATAATCGGGAAGCTCATGAAGGGGCCTTTAATC
1 GAGCCAATATCGAGAAGCT-TAAGAGAGCT-AATAATCAGAAAGCTCATCAAAGAGCCTTTAATC
7980171 -AAGAAGCTCCGA-A
64 GAA-AAGCTCCGACA
7980184 GAGCCATATATC
1 GAGCCA-ATATC
7980196 AGGACACTCA
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
77 28 0.38
78 46 0.62
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (77 bp):
GAGCCAATATCGAGAAGCTTAAGAGAGCTAATAATCAGAAAGCTCATCAAAGAGCCTTTAATCGA
AAAGCTCCGACA
Found at i:7993206 original size:16 final size:16
Alignment explanation
Indices: 7993182--7993232 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
7993172 TGAATTACTA
*
7993182 ATTACAGTTCTATTCT
1 ATTACAGTTCTATTCC
*
7993198 ATTATAGTTCTATTCC
1 ATTACAGTTCTATTCC
*
7993214 ATTACAGCTCTATTCC
1 ATTACAGTTCTATTCC
7993230 ATT
1 ATT
7993233 CTAATGAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:7999007 original size:22 final size:22
Alignment explanation
Indices: 7998969--7999012 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7998959 TGTTGCCAGT
*
7998969 CGTTCAATAGACGGAGCTTCAC
1 CGTTCAATAGACAGAGCTTCAC
7998991 CGTTCAATAG-CAAGAGCTTCAC
1 CGTTCAATAGAC-AGAGCTTCAC
7999013 GGCTTCATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (22 bp):
CGTTCAATAGACAGAGCTTCAC
Found at i:8002742 original size:11 final size:11
Alignment explanation
Indices: 8002726--8002765 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
8002716 GTAATGTTAA
8002726 AATATATACAT
1 AATATATACAT
8002737 AATATATACAT
1 AATATATACAT
8002748 ATATATATA-AT
1 A-ATATATACAT
8002759 AA-ATATA
1 AATATATA
8002766 AAAAAATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 5 0.18
10 1 0.04
11 15 0.54
12 7 0.25
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (11 bp):
AATATATACAT
Found at i:8002909 original size:20 final size:19
Alignment explanation
Indices: 8002886--8002951 Score: 51
Period size: 22 Copynumber: 3.2 Consensus size: 19
8002876 TACGAAAATA
*
8002886 ATACTATATATAAAATATGT
1 ATACTA-ATATAAAATATAT
*
8002906 ATACAAGAATAATAAAATATAT
1 ATAC--TAAT-ATAAAATATAT
*
8002928 ATACTAATATTAATAATAAAT
1 ATACTAATA-TAA-AATATAT
8002949 ATA
1 ATA
8002952 GTAGGAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
19 1 0.03
20 10 0.27
21 11 0.30
22 15 0.41
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
ATACTAATATAAAATATAT
Found at i:8003133 original size:22 final size:22
Alignment explanation
Indices: 8003069--8003148 Score: 56
Period size: 23 Copynumber: 3.5 Consensus size: 22
8003059 ATGTACATGG
8003069 AATAGTATATAAAAAATATA-ACT
1 AATA-TATATAAAAAATATACA-T
**
8003092 AATA-ATATTGAAAATGTATACAT
1 AATATATA-T-AAAAAATATACAT
*
8003115 AATATATATAAAACATATACGAT
1 AATATATATAAAAAATATAC-AT
*
8003138 ATATACATATA
1 A-ATATATATA
8003149 CATTAGAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
21 3 0.07
22 10 0.22
23 21 0.46
24 12 0.26
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.33
Consensus pattern (22 bp):
AATATATATAAAAAATATACAT
Found at i:8003395 original size:17 final size:16
Alignment explanation
Indices: 8003373--8003417 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
8003363 AATACTTCAC
8003373 AAATATATATATACTAA
1 AAATATATATATAC-AA
*
8003390 AAATATACATA-ACAA
1 AAATATATATATACAA
*
8003405 TAATATATATATA
1 AAATATATATATA
8003418 TGTATATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 11 0.46
16 3 0.12
17 10 0.42
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATATATATACAA
Found at i:8005301 original size:88 final size:88
Alignment explanation
Indices: 8005150--8005550 Score: 298
Period size: 88 Copynumber: 4.6 Consensus size: 88
8005140 TACTCGGCAT
** * * *
8005150 GTGATCCTGA-GCTCAACTCATTTCTCGCAATATAAATTGACTCTTT-AAAACTAGACATT--AA
1 GTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAC-AGA-ATTCAAA
* *
8005211 AAACAAAAATTGAGAATAGCTCAGCAC
62 AAACAAAAATTGAAAATACCTCAGCAC
* * *
8005238 GTGAGCTAAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTGAAAACAGAATTCAAAAAAC
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTCAAAAAAC
* ** *
8005303 AGATTTTGAAAATATCTC-GACAC
66 AAAAATTGAAAATACCTCAG-CAC
* * * * * *
8005326 GTAACCCGAGGCTCAACTCACCTCTCACAATATAAGTTAATTTTTGAAAA-ATGTAAATTGAAAA
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACA-G--AATTCAAAA
*
8005390 AA-ATAGAAATTGAAAACACCTCA--AC
63 AACA-A-AAATTGAAAATACCTCAGCAC
* * * *
8005415 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGTGTTGATTTTTTG-AAA-AG----C-AGAAG
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAATTCAAAAAA
*
8005473 CAAAAATTGAAAATAACTCAG--C
65 CAAAAATTGAAAATACCTCAGCAC
* * * *
8005495 GTGCCCTGAGGCTTAACTCACATCTCACAATATGAGTTGATTTTTGACAAACAGAA
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAA
8005551 ATTGAAATTA
Statistics
Matches: 250, Mismatches: 44, Indels: 42
0.74 0.13 0.12
Matches are distributed among these distances:
79 6 0.02
80 51 0.20
81 7 0.03
82 3 0.01
86 3 0.01
87 12 0.05
88 100 0.40
89 40 0.16
90 16 0.06
91 12 0.05
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (88 bp):
GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTCAAAAAAC
AAAAATTGAAAATACCTCAGCAC
Found at i:8005599 original size:73 final size:77
Alignment explanation
Indices: 8005394--8005769 Score: 374
Period size: 73 Copynumber: 4.8 Consensus size: 77
8005384 TGAAAAAAAT
* * *
8005394 AGAAATTGAAAACACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGTGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
8005459 TTGAAAAGCAGAAGC
65 TTG--AAGCAGAAGC
* * * * * *
8005474 AAAAATTGAAAATAACTCAGCGTGCCCTGAGGCTTAACTCACATCTCACAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
8005539 TG-A-CA-AA-C
66 TGAAGCAGAAGC
* * *
8005547 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATAAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
* * * *
8005612 TTTAAACATAAATTAAAAAAC
65 TTGAAGC--------AGAAGC
* * * * * *
8005633 AAAAATTGAACATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTCGA-TTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
8005697 TGAA--A-AA-C
66 TGAAGCAGAAGC
*
8005705 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
8005770 AAAAACAGAA
Statistics
Matches: 246, Mismatches: 36, Indels: 35
0.78 0.11 0.11
Matches are distributed among these distances:
72 55 0.22
73 58 0.24
74 8 0.03
75 3 0.01
76 2 0.01
79 6 0.02
80 52 0.21
84 7 0.03
85 2 0.01
86 53 0.22
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (77 bp):
AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGAAGCAGAAGC
Found at i:8005705 original size:86 final size:86
Alignment explanation
Indices: 8005543--8005716 Score: 224
Period size: 86 Copynumber: 2.0 Consensus size: 86
8005533 GATTTTTGAC
* * * * * *
8005543 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATAAGTTGA
1 AAACAAAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATAAGTCGA
*** *
8005608 TTTTTTTAAACATAAATTAAA
66 TTTTGAAAAACAGAAATTAAA
*
8005629 AAACAAAAATTGAACA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTCG
1 AAACAAAAATTGAA-ATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATAAGTCG
*
8005693 ATTTTGAAAAACAGAAATTGAA
65 ATTTTGAAAAACAGAAATTAAA
8005715 AA
1 AA
8005717 TACCTCAGCG
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
86 74 0.99
87 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (86 bp):
AAACAAAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATAAGTCGA
TTTTGAAAAACAGAAATTAAA
Found at i:8005744 original size:72 final size:71
Alignment explanation
Indices: 8005627--8005781 Score: 238
Period size: 72 Copynumber: 2.2 Consensus size: 71
8005617 ACATAAATTA
* * *
8005627 AAAAACAAAAATTGAACATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTC
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACATCTCACAATATGAGTC
8005692 GATTTT
66 GATTTT
* * *
8005698 GAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGT
1 -AAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACATCTCACAATATGAGT
*
8005763 TGATTTT
65 CGATTTT
8005770 AAAAACAGAAAT
1 AAAAACAGAAAT
8005782 AAAAATATCA
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
71 12 0.16
72 64 0.84
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (71 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACATCTCACAATATGAGTC
GATTTT
Found at i:8005758 original size:158 final size:154
Alignment explanation
Indices: 8005388--8005769 Score: 525
Period size: 158 Copynumber: 2.5 Consensus size: 154
8005378 GTAAATTGAA
* * * *
8005388 AAAAATAGAAATTGAAAACACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGTGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * * *
8005453 GA-TTTTTTGAAAAGCAGAAGCAAAAATTGAAAATAACTCAGCGTGCCCTGAGGCTTAACTCACA
66 GATTTTTTTCAAAAGAAAAAACAAAAATTGAAAATAACTCAGCGTGCCCCGAGGCTCAACTCACA
*
8005517 TCTCACAATATGAGTTGATTTTTG
131 TCTCACAATATGAGTCGATTTTTG
* * * *
8005541 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATAAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
8005606 GATTTTTTTAAACATAAATTAAAAAACAAAAATTGAACATACCTCAGCGTGCCCCGAGGCTCAAC
66 GATTTTTTT---CA-AAA-GAAAAAACAAAAATTGAAAATAACTCAGCGTGCCCCGAGGCTCAAC
*
8005671 TCACCTCTCACAATATGAGTCGA-TTTTG
126 TCACATCTCACAATATGAGTCGATTTTTG
*
8005699 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
8005764 GATTTT
66 GATTTT
8005770 AAAAACAGAA
Statistics
Matches: 199, Mismatches: 24, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
153 59 0.30
154 6 0.03
157 1 0.01
158 74 0.37
159 59 0.30
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (154 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTCAAAAGAAAAAACAAAAATTGAAAATAACTCAGCGTGCCCCGAGGCTCAACTCACA
TCTCACAATATGAGTCGATTTTTG
Found at i:8007500 original size:70 final size:70
Alignment explanation
Indices: 8007368--8007502 Score: 155
Period size: 70 Copynumber: 1.9 Consensus size: 70
8007358 AAATTTTTGG
* * *** * * *
8007368 GGAATTCTCTTGAAGTTTACCCTGTTGGAAGTTAGTACTTGTGTTATTTTTCTGTATATATTTTT
1 GGAATTCTCTTGAAGTTCACCCTGTTGGAAGGTAGTACTCAAGTTACTTTTCTGAAGATATTTTT
8007433 GGGGT
66 GGGGT
* * *
8007438 GGAATTCTCTTGAAGTTCATCCTGTTGGAAGGTAGTTCTCAAGTT-CTTTTCTGAACGCTATTTT
1 GGAATTCTCTTGAAGTTCACCCTGTTGGAAGGTAGTACTCAAGTTACTTTTCTGAA-GATATTTT
8007502 T
65 T
8007503 TCCCCCTTCG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
69 8 0.15
70 45 0.85
ACGTcount: A:0.19, C:0.13, G:0.21, T:0.46
Consensus pattern (70 bp):
GGAATTCTCTTGAAGTTCACCCTGTTGGAAGGTAGTACTCAAGTTACTTTTCTGAAGATATTTTT
GGGGT
Found at i:8011331 original size:15 final size:16
Alignment explanation
Indices: 8011290--8011333 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
8011280 TATTATTGTC
*
8011290 AAGATTCATTTGTTTAA
1 AAGATTAATTT-TTTAA
*
8011307 AAGCTTAATTTTTTAA
1 AAGATTAATTTTTTAA
8011323 AA-ATTAATTTT
1 AAGATTAATTTT
8011334 GAATTTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 8 0.33
16 7 0.29
17 9 0.38
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.50
Consensus pattern (16 bp):
AAGATTAATTTTTTAA
Found at i:8011370 original size:20 final size:19
Alignment explanation
Indices: 8011345--8011385 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
8011335 AATTTTTTAT
* *
8011345 AAATTTTTAAAATATTATTA
1 AAATTTATAAAA-AATATTA
8011365 AAATTTATAAAAAATATTA
1 AAATTTATAAAAAATATTA
8011384 AA
1 AA
8011386 TAAATTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
AAATTTATAAAAAATATTA
Found at i:8012020 original size:20 final size:21
Alignment explanation
Indices: 8011990--8012046 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
8011980 GAAATTTATT
* *
8011990 TAATATTTTTATACATTT-TAA
1 TAAT-TTTTTATAAATTTAAAA
8012011 TAATTTTTTATAAATTTAAAA
1 TAATTTTTTATAAATTTAAAA
*
8012032 TCAATTTTTTTTAAA
1 T-AATTTTTTATAAA
8012047 AAAATTAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.39
21 7 0.23
22 12 0.39
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (21 bp):
TAATTTTTTATAAATTTAAAA
Found at i:8016125 original size:13 final size:13
Alignment explanation
Indices: 8016107--8016134 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8016097 TAATCTTACC
8016107 TTACCAACCACTT
1 TTACCAACCACTT
8016120 TTACCAACCACTT
1 TTACCAACCACTT
8016133 TT
1 TT
8016135 TTTTTGGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.36, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACCAACCACTT
Found at i:8023667 original size:17 final size:17
Alignment explanation
Indices: 8023647--8023685 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
8023637 TTTCGTTGTA
*
8023647 TTTTGTATTT-CTAACC
1 TTTTTTATTTCCTAACC
*
8023663 TTTTTTTTTTCCTAACC
1 TTTTTTATTTCCTAACC
8023680 TTTTTT
1 TTTTTT
8023686 CTTTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTTTTATTTCCTAACC
Found at i:8023673 original size:16 final size:18
Alignment explanation
Indices: 8023657--8023690 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
8023647 TTTTGTATTT
8023657 CTAACCTTTTTT-TTTTC
1 CTAACCTTTTTTCTTTTC
8023674 CTAACCTTTTTTCTTTT
1 CTAACCTTTTTTCTTTT
8023691 TTTTTTTCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.65
Consensus pattern (18 bp):
CTAACCTTTTTTCTTTTC
Found at i:8025120 original size:15 final size:15
Alignment explanation
Indices: 8025100--8025130 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8025090 AAAACAATTC
8025100 CAAAGTTGTTATTAG
1 CAAAGTTGTTATTAG
8025115 CAAAGTTGTTATTAG
1 CAAAGTTGTTATTAG
8025130 C
1 C
8025131 TTTGGACAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (15 bp):
CAAAGTTGTTATTAG
Found at i:8025908 original size:27 final size:27
Alignment explanation
Indices: 8025870--8025935 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
8025860 AGGGAGTGCT
*
8025870 AGAGGCGGCACCGTTTGTGCCTCTGGC
1 AGAGGCGGCACCGGTTGTGCCTCTGGC
*
8025897 AGAGGCGACACCGGTTGTGCCTCTGGC
1 AGAGGCGGCACCGGTTGTGCCTCTGGC
*
8025924 AAAGGCGGCACC
1 AGAGGCGGCACC
8025936 TCGTTTGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.17, C:0.30, G:0.36, T:0.17
Consensus pattern (27 bp):
AGAGGCGGCACCGGTTGTGCCTCTGGC
Found at i:8026013 original size:19 final size:18
Alignment explanation
Indices: 8025964--8026026 Score: 71
Period size: 19 Copynumber: 3.6 Consensus size: 18
8025954 TGGGGACCTT
8025964 CTTCTTCTTCTCTT-CTC
1 CTTCTTCTTCTCTTGCTC
8025981 CTT-TT-TT-TCTTGCTC
1 CTTCTTCTTCTCTTGCTC
*
8025996 CTTCTTCTTCTCCTTGCTG
1 CTTCTTCTTCT-CTTGCTC
8026015 CTTCTTGCTTCT
1 CTTCTT-CTTCT
8026027 GCTGCTGAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
14 4 0.10
15 8 0.21
16 4 0.10
17 5 0.13
18 1 0.03
19 12 0.31
20 5 0.13
ACGTcount: A:0.00, C:0.35, G:0.06, T:0.59
Consensus pattern (18 bp):
CTTCTTCTTCTCTTGCTC
Found at i:8027083 original size:28 final size:28
Alignment explanation
Indices: 8027011--8027081 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 28
8027001 CAATTATCTT
*
8027011 AATTAGAGTGACTAAATTGATAAAAAAA
1 AATTAAAGTGACTAAATTGATAAAAAAA
*
8027039 AATTAAAGTGATTAAATTGAT-AAAAAA
1 AATTAAAGTGACTAAATTGATAAAAAAA
*
8027066 ATTTAAAGTGACTAAA
1 AATTAAAGTGACTAAA
8027082 ATAAGGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.56, C:0.03, G:0.13, T:0.28
Consensus pattern (28 bp):
AATTAAAGTGACTAAATTGATAAAAAAA
Found at i:8027091 original size:27 final size:27
Alignment explanation
Indices: 8027011--8027091 Score: 65
Period size: 27 Copynumber: 3.0 Consensus size: 27
8027001 CAATTATCTT
* *
8027011 AATTAGAGTGACTAAATTGATA-AAAAAA
1 AATTAAAGTGACTAAAAT-A-AGAAAAAA
* * * *
8027039 AATTAAAGTGATTAAATTGATAAAAAA
1 AATTAAAGTGACTAAAATAAGAAAAAA
* *
8027066 ATTTAAAGTGACTAAAATAAGGAAAA
1 AATTAAAGTGACTAAAATAAGAAAAA
8027092 CACTATTTTA
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
26 1 0.02
27 26 0.60
28 16 0.37
ACGTcount: A:0.58, C:0.02, G:0.14, T:0.26
Consensus pattern (27 bp):
AATTAAAGTGACTAAAATAAGAAAAAA
Found at i:8032841 original size:21 final size:22
Alignment explanation
Indices: 8032816--8032857 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
8032806 GATAAAATTA
*
8032816 AATCTCGAAACTCAAA-ATAAT
1 AATCTCAAAACTCAAATATAAT
*
8032837 AATCTCAAAACTTAAATATAA
1 AATCTCAAAACTCAAATATAA
8032858 AATTCTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.55, C:0.17, G:0.02, T:0.26
Consensus pattern (22 bp):
AATCTCAAAACTCAAATATAAT
Found at i:8032962 original size:25 final size:26
Alignment explanation
Indices: 8032911--8032973 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 26
8032901 AAATTAGTGT
*
8032911 AATCAAAATTTAAGTGGAAAACTAAA
1 AATCAAAATTTAAGTGGAAAACGAAA
*
8032937 AA-CAAAATTTAATTGAGAAAA-GAAA
1 AATCAAAATTTAAGTG-GAAAACGAAA
*
8032962 AATCGAAATTTA
1 AATCAAAATTTA
8032974 TGAGACATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 17 0.53
26 15 0.47
ACGTcount: A:0.59, C:0.06, G:0.11, T:0.24
Consensus pattern (26 bp):
AATCAAAATTTAAGTGGAAAACGAAA
Found at i:8032963 original size:26 final size:25
Alignment explanation
Indices: 8032914--8032973 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 25
8032904 TTAGTGTAAT
*
8032914 CAAAATTTAAGTGGAAAACTAAAAA
1 CAAAATTTAAGTGGAAAACAAAAAA
* * *
8032939 CAAAATTTAATTGAGAAAAGAAAAAT
1 CAAAATTTAAGTG-GAAAACAAAAAA
*
8032965 CGAAATTTA
1 CAAAATTTA
8032974 TGAGACATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 12 0.41
26 17 0.59
ACGTcount: A:0.58, C:0.07, G:0.12, T:0.23
Consensus pattern (25 bp):
CAAAATTTAAGTGGAAAACAAAAAA
Found at i:8033276 original size:20 final size:19
Alignment explanation
Indices: 8033251--8033295 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
8033241 CGGAAAATAA
*
8033251 TTTCTGAAAAATGATTTACT
1 TTTCTG-AAAATGATTTACC
*
8033271 TTTCTGGAAATGATTTACC
1 TTTCTGAAAATGATTTACC
8033290 TTTCTG
1 TTTCTG
8033296 GTGTTTGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACC
Found at i:8033283 original size:19 final size:19
Alignment explanation
Indices: 8033259--8033296 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8033249 AATTTCTGAA
*
8033259 AAATGATTTACTTTTCTGG
1 AAATGATTTACCTTTCTGG
8033278 AAATGATTTACCTTTCTGG
1 AAATGATTTACCTTTCTGG
8033297 TGTTTGGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (19 bp):
AAATGATTTACCTTTCTGG
Found at i:8033694 original size:16 final size:16
Alignment explanation
Indices: 8033670--8033705 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8033660 AATTTAATAC
8033670 AAAAATCCAAAACCAT
1 AAAAATCCAAAACCAT
* *
8033686 AAAATTCCAAAATCAT
1 AAAAATCCAAAACCAT
8033702 AAAA
1 AAAA
8033706 GAAAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.19, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAAATCCAAAACCAT
Found at i:8035594 original size:43 final size:43
Alignment explanation
Indices: 8035485--8035648 Score: 163
Period size: 43 Copynumber: 3.8 Consensus size: 43
8035475 TATCGAGATG
* * **
8035485 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATATT-A
*
8035529 -GATTAAGTGTAAGACCATGTCTGGGACATTGGCATCATATTA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATATTA
* * * *
8035571 TGATTTCGTGTAAGACCATGTCTGAGACAGTGACATCA-ATATA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATAT-TA
* * * * *
8035614 TGATAACATATAAGACCATATCTGGGATA-TGGCAT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCAT
8035649 TGTGCGAGCT
Statistics
Matches: 100, Mismatches: 18, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
42 8 0.08
43 92 0.92
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATATTA
Found at i:8038923 original size:32 final size:32
Alignment explanation
Indices: 8038836--8038964 Score: 152
Period size: 32 Copynumber: 4.0 Consensus size: 32
8038826 TTTCTGAGTG
* * **
8038836 GTACACACAAAGTATACCTTTCCTTTTCATA-T
1 GTACACACAAAGTGTACATAACCTTTTCA-AGT
* * * *
8038868 GGTATACACAAAGTATACCTAACCTTTCCAAGT
1 -GTACACACAAAGTGTACATAACCTTTTCAAGT
8038901 GTACACACAAAGTGTACATAACCTTTTCAAGT
1 GTACACACAAAGTGTACATAACCTTTTCAAGT
*
8038933 GTACATACAAAGTGTACATAACCTTTTCAAGT
1 GTACACACAAAGTGTACATAACCTTTTCAAGT
8038965 TTCAAGTTGT
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
32 60 0.70
33 26 0.30
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (32 bp):
GTACACACAAAGTGTACATAACCTTTTCAAGT
Found at i:8044665 original size:46 final size:47
Alignment explanation
Indices: 8044600--8044733 Score: 139
Period size: 46 Copynumber: 2.9 Consensus size: 47
8044590 TTATCTTTGA
* * * * *
8044600 CATGATGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTC-TGC
1 CATGTTGCCATGGTATCTTTCAACTATGGTCTTACTCATTTTCATAC
* *
8044646 CATGTTGCCATGGTATCTTTCAA-TCATGGTCTTATTCA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACT-ATGGTCTTACTCATTTTCATAC
* * * *
8044692 CACGTTGCCATGGTATATTTCAACCATGGTCTTACACATTTT
1 CATGTTGCCATGGTATCTTTCAACTATGGTCTTACTCATTTT
8044734 ATATCAGAGA
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
45 5 0.07
46 64 0.89
47 3 0.04
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.42
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACTATGGTCTTACTCATTTTCATAC
Found at i:8044738 original size:46 final size:46
Alignment explanation
Indices: 8044617--8044739 Score: 147
Period size: 46 Copynumber: 2.7 Consensus size: 46
8044607 CCATAGTGTC
* * * ** * *
8044617 TTTCAACTATAGTCTTACTCATTTTCTGCCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCATTTTATATCACGTTGCCATGGTATA
* * *
8044663 TTTCAATCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATA
1 TTTCAACCATGGTCTTACTCATTTTATATCACGTTGCCATGGTATA
*
8044709 TTTCAACCATGGTCTTACACATTTTATATCA
1 TTTCAACCATGGTCTTACTCATTTTATATCA
8044740 GAGAGCACAC
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 63 1.00
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (46 bp):
TTTCAACCATGGTCTTACTCATTTTATATCACGTTGCCATGGTATA
Found at i:8046564 original size:11 final size:11
Alignment explanation
Indices: 8046548--8046604 Score: 57
Period size: 11 Copynumber: 5.3 Consensus size: 11
8046538 CTTTCTTTAT
8046548 ATACTAATAAA
1 ATACTAATAAA
8046559 ATACTAAT-AA
1 ATACTAATAAA
8046569 A-A-TAATAAA
1 ATACTAATAAA
*
8046578 ATATCTTATTAAA
1 ATA-C-TAATAAA
*
8046591 ATATTAATAAA
1 ATACTAATAAA
8046602 ATA
1 ATA
8046605 ATATTTATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
8 4 0.11
9 4 0.11
10 4 0.11
11 17 0.45
13 9 0.24
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.33
Consensus pattern (11 bp):
ATACTAATAAA
Found at i:8055893 original size:25 final size:24
Alignment explanation
Indices: 8055861--8055914 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
8055851 ATGTTCAAGT
8055861 GAGCTATATCAGGAAGCTCA-AGAA
1 GAGCTATATCAGGAAGCTCATA-AA
*
8055885 GAGCATATATCAGGACGCTCATAAA
1 GAGC-TATATCAGGAAGCTCATAAA
8055910 GAGCT
1 GAGCT
8055915 GTATTTGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 5 0.19
25 21 0.78
26 1 0.04
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.19
Consensus pattern (24 bp):
GAGCTATATCAGGAAGCTCATAAA
Found at i:8062060 original size:129 final size:128
Alignment explanation
Indices: 8061857--8062115 Score: 437
Period size: 129 Copynumber: 2.0 Consensus size: 128
8061847 TCCTCCCAAG
*
8061857 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATAATACATTTATTTCTTAGTAAAACAAAG
1 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATAATACATTTATTTATTAGTAAAACAAAG
* *
8061922 GGCATACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCCCATTTTTT
66 GGCAAACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCATATTTTGGTCATCCCATTTTTT
* *
8061985 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATTAATGCATTTATTTATTAGTAAAATAAA
1 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATA-TAATACATTTATTTATTAGTAAAACAAA
* * *
8062050 GGGCAAACTATCTCGTTAGTTACTCTAAATAGTGGTCGTTCATATTTTGGTCATCTCATTTTTT
65 GGGCAAACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCATATTTTGGTCATCCCATTTTTT
8062114 TT
1 TT
8062116 GTTAATTTAG
Statistics
Matches: 122, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
128 36 0.30
129 86 0.70
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (128 bp):
TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATAATACATTTATTTATTAGTAAAACAAAG
GGCAAACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCATATTTTGGTCATCCCATTTTTT
Found at i:8069030 original size:24 final size:24
Alignment explanation
Indices: 8068997--8069050 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
8068987 TTATAAAAAT
*
8068997 TTTAGGTTTAAAATTTGA-TTTTC
1 TTTAGATTTAAAATTTGATTTTTC
8069020 GTTTAGATTTAAAATTTGATTTTTC
1 -TTTAGATTTAAAATTTGATTTTTC
8069045 TTTAGA
1 TTTAGA
8069051 ATAAAGAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.56
Consensus pattern (24 bp):
TTTAGATTTAAAATTTGATTTTTC
Found at i:8069235 original size:15 final size:15
Alignment explanation
Indices: 8069190--8069256 Score: 62
Period size: 15 Copynumber: 4.3 Consensus size: 15
8069180 ATAACTTAAA
* *
8069190 TTCAATACTTAAATT
1 TTCAACACTTAATTT
* *
8069205 TTCAATATTTAATTT
1 TTCAACACTTAATTT
*
8069220 TTCAACACTTATTTTT
1 TTCAACACTTA-ATTT
*
8069236 GTTCGACACTTAATTT
1 -TTCAACACTTAATTT
8069252 TTCAA
1 TTCAA
8069257 TTTATCAAAC
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
15 26 0.62
16 6 0.14
17 10 0.24
ACGTcount: A:0.31, C:0.15, G:0.03, T:0.51
Consensus pattern (15 bp):
TTCAACACTTAATTT
Found at i:8091931 original size:32 final size:32
Alignment explanation
Indices: 8091890--8091962 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 32
8091880 GGAGGGTGGC
*
8091890 CGTGTGGGCCACAAGAGCTAGGCCAAATTGGG
1 CGTGTGGGCCACAAGAGCTAGGCCAAATTAGG
* *
8091922 CGTGTGGGCCACACGGGCTAGGCCAAATTAGG
1 CGTGTGGGCCACAAGAGCTAGGCCAAATTAGG
*
8091954 CATGTGGGC
1 CGTGTGGGC
8091963 TACACTGAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.22, C:0.23, G:0.38, T:0.16
Consensus pattern (32 bp):
CGTGTGGGCCACAAGAGCTAGGCCAAATTAGG
Found at i:8099171 original size:29 final size:28
Alignment explanation
Indices: 8099138--8099234 Score: 97
Period size: 28 Copynumber: 3.4 Consensus size: 28
8099128 AATGTTTCCT
*
8099138 TTTAATAGAGATAGTCATGAAGGATTTA
1 TTTAATAGAGATAGTCATGAAGGATTTC
* *
8099166 TATTAACAGAGATCGT-ATGAAGGATTTC
1 T-TTAATAGAGATAGTCATGAAGGATTTC
* * * * *
8099194 TTTTACTAGAGATTGCCATAAAGGTTTTC
1 -TTTAATAGAGATAGTCATGAAGGATTTC
8099223 TTTAATAGAGAT
1 TTTAATAGAGAT
8099235 TGCCACAAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 33 0.59
29 23 0.41
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (28 bp):
TTTAATAGAGATAGTCATGAAGGATTTC
Found at i:8099235 original size:28 final size:28
Alignment explanation
Indices: 8099108--8099253 Score: 87
Period size: 28 Copynumber: 5.1 Consensus size: 28
8099098 CAAAAGCGTC
* * * * *
8099108 CTTTAACAGAGATTGCTACAAATGTTTC
1 CTTTAATAGAGATTGCCATAAAGGTTTT
* * * *
8099136 CTTTTAATAGAGATAGTCATGAAGGATTT
1 C-TTTAATAGAGATTGCCATAAAGGTTTT
* * * * * *
8099165 ATATTAACAGAGATCG-TATGAAGGATTT
1 CT-TTAATAGAGATTGCCATAAAGGTTTT
*
8099193 CTTTTACTAGAGATTGCCATAAAGGTTTT
1 C-TTTAATAGAGATTGCCATAAAGGTTTT
* * *
8099222 CTTTAATAGAGATTGCCACAAAAGTTTC
1 CTTTAATAGAGATTGCCATAAAGGTTTT
8099250 CTTT
1 CTTT
8099254 TAACGAGGTC
Statistics
Matches: 90, Mismatches: 24, Indels: 8
0.74 0.20 0.07
Matches are distributed among these distances:
28 50 0.56
29 40 0.44
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (28 bp):
CTTTAATAGAGATTGCCATAAAGGTTTT
Found at i:8104372 original size:17 final size:17
Alignment explanation
Indices: 8104352--8104520 Score: 62
Period size: 17 Copynumber: 9.5 Consensus size: 17
8104342 ATTATTTTAC
8104352 ATTATTATTTATATATT
1 ATTATTATTTATATATT
*
8104369 ATTATTATATT-TTTACTT
1 ATTATTAT-TTATATA-TT
* * * *
8104387 -GTATAATATATTTATT
1 ATTATTATTTATATATT
* *
8104403 AATCATT-TATATATATT
1 -ATTATTATTTATATATT
*
8104420 ATATATTATTTTTGCATATAT
1 AT-TATTATTTAT--ATAT-T
*
8104441 ACTT-TCATATTATATATT
1 A-TTATTAT-TTATATATT
*
8104459 ATAATTATTT-TATATT
1 ATTATTATTTATATATT
8104475 ATGTTATT-TTTATACTATT
1 A--TTATTATTTATA-TATT
* *
8104494 ATATATTTTTTATCTATAT
1 AT-TATTATTTATATAT-T
8104513 ATTATTAT
1 ATTATTAT
8104521 CATTAAACGT
Statistics
Matches: 114, Mismatches: 18, Indels: 39
0.67 0.11 0.23
Matches are distributed among these distances:
16 12 0.11
17 39 0.34
18 32 0.28
19 17 0.15
20 7 0.06
21 6 0.05
22 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (17 bp):
ATTATTATTTATATATT
Found at i:8104472 original size:16 final size:16
Alignment explanation
Indices: 8104448--8104518 Score: 54
Period size: 16 Copynumber: 4.2 Consensus size: 16
8104438 TATACTTTCA
*
8104448 TATTATATATTATAAT
1 TATTTTATATTATAAT
*
8104464 TATTTTATATTAT-GT
1 TATTTTATATTATAAT
* *
8104479 TATTTTTATACTATTAT
1 TA-TTTTATATTATAAT
*
8104496 ATATTTTTTATCTATATAT
1 -TATTTTATAT-TATA-AT
8104515 TATT
1 TATT
8104519 ATCATTAAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
15 3 0.07
16 22 0.51
17 7 0.16
18 9 0.21
19 2 0.05
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (16 bp):
TATTTTATATTATAAT
Found at i:8104784 original size:18 final size:19
Alignment explanation
Indices: 8104763--8104809 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
8104753 TTCTAAACCA
8104763 ATATATTTTTTATT-TTAT
1 ATATATTTTTTATTCTTAT
* * *
8104781 ATATAATTATTATTCTTTT
1 ATATATTTTTTATTCTTAT
*
8104800 ATAAATTTTT
1 ATATATTTTT
8104810 GTTATTATAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
ATATATTTTTTATTCTTAT
Found at i:8107896 original size:16 final size:17
Alignment explanation
Indices: 8107872--8107904 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8107862 AAAACTTTAA
8107872 ATTCGAAATT-CTATTT
1 ATTCGAAATTACTATTT
*
8107888 ATTCTAAATTACTATTT
1 ATTCGAAATTACTATTT
8107905 TTATATCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.52
Consensus pattern (17 bp):
ATTCGAAATTACTATTT
Found at i:8122779 original size:46 final size:46
Alignment explanation
Indices: 8122732--8123189 Score: 594
Period size: 46 Copynumber: 10.0 Consensus size: 46
8122722 GCTCTCTGAT
* * * *
8122732 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
8122778 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
8122824 ATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
8122870 ATGAAATGAATAAGAACATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
8122916 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
8122962 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
8123008 ATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
8123054 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGTAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
8123100 ATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
8123146 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
8123190 TCAAAGATAA
Statistics
Matches: 371, Mismatches: 40, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
45 1 0.00
46 370 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:8123491 original size:16 final size:17
Alignment explanation
Indices: 8123470--8123502 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8123460 ATGATGGTGC
8123470 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
*
8123486 ATGAAATGATTGCTATA
1 ATGAAATGATTGATATA
8123503 TACTAATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:8130074 original size:21 final size:21
Alignment explanation
Indices: 8130048--8130088 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8130038 ATCTGTTCAA
* *
8130048 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
8130069 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
8130089 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:8133230 original size:5 final size:5
Alignment explanation
Indices: 8133220--8133251 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
8133210 TCAGTGTGAA
8133220 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
8133252 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:8133245 original size:9 final size:9
Alignment explanation
Indices: 8133221--8133251 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
8133211 CAGTGTGAAA
8133221 AAATAAAAT
1 AAATAAAAT
8133230 AAAATAAAAT
1 -AAATAAAAT
8133240 AAATAAAAT
1 AAATAAAAT
8133249 AAA
1 AAA
8133252 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Done.