Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 281 of 333
Found at i:92984581 original size:16 final size:18
Alignment explanation
Indices: 92984555--92984587 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
92984545 TTACTTTAGA
92984555 TAAATTAATTTT-TCAAT
1 TAAATTAATTTTCTCAAT
92984572 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
92984588 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:92994744 original size:18 final size:18
Alignment explanation
Indices: 92994721--92994771 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 18
92994711 GAGGAATGGA
92994721 TAGAATTCAACACTATTC
1 TAGAATTCAACACTATTC
92994739 TAGAATTCAACAACACTATTC
1 TAGAATT---CAACACTATTC
92994760 TAGAATTCAACA
1 TAGAATTCAACA
92994772 AGGTTCTAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 12 0.40
21 18 0.60
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (18 bp):
TAGAATTCAACACTATTC
Found at i:92994754 original size:21 final size:21
Alignment explanation
Indices: 92994728--92994772 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
92994718 GGATAGAATT
92994728 CAACACTATTCTAGAATTCAA
1 CAACACTATTCTAGAATTCAA
92994749 CAACACTATTCTAGAATTCAA
1 CAACACTATTCTAGAATTCAA
92994770 CAA
1 CAA
92994773 GGTTCTAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.44, C:0.24, G:0.04, T:0.27
Consensus pattern (21 bp):
CAACACTATTCTAGAATTCAA
Found at i:92998185 original size:38 final size:38
Alignment explanation
Indices: 92998134--92998210 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
92998124 CAAGAGCCTT
92998134 AGTCTTTGGGGGCCTTGTGAGTGTTTTTTATTATTGAA
1 AGTCTTTGGGGGCCTTGTGAGTGTTTTTTATTATTGAA
92998172 AGTCTTTGGGGGCCTTGTGAGTGTTTTTTATTATTGAA
1 AGTCTTTGGGGGCCTTGTGAGTGTTTTTTATTATTGAA
92998210 A
1 A
92998211 AAAGAGTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.17, C:0.08, G:0.29, T:0.47
Consensus pattern (38 bp):
AGTCTTTGGGGGCCTTGTGAGTGTTTTTTATTATTGAA
Found at i:93002286 original size:18 final size:19
Alignment explanation
Indices: 93002265--93002308 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
93002255 ACCAAAAGCA
* *
93002265 GCGAGCTTTATTAAAAG-T
1 GCGAGCTTCATAAAAAGAT
93002283 GCGAGC-TCATAAAAAGAT
1 GCGAGCTTCATAAAAAGAT
93002301 GCGAGCTT
1 GCGAGCTT
93002309 AACTTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 8 0.36
18 13 0.59
19 1 0.05
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (19 bp):
GCGAGCTTCATAAAAAGAT
Found at i:93003234 original size:29 final size:29
Alignment explanation
Indices: 93003197--93003252 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
93003187 TCCTGAATTA
93003197 ACTAAAATTGTGATTTCGATAGAAATTCG
1 ACTAAAATTGTGATTTCGATAGAAATTCG
* * *
93003226 ACTACAATTGTGATTTTGGTAGAAATT
1 ACTAAAATTGTGATTTCGATAGAAATT
93003253 GCTTAGGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (29 bp):
ACTAAAATTGTGATTTCGATAGAAATTCG
Found at i:93004383 original size:63 final size:64
Alignment explanation
Indices: 93004260--93004383 Score: 178
Period size: 63 Copynumber: 2.0 Consensus size: 64
93004250 ACAATTTAGA
* *
93004260 CATTCAAACAAAACTTAGTTTCATCAATTGAAACATAAAAATCTTTGTCATTAGATGAACCGAG
1 CATTCAAACAAAACTTAGTTTCATCAATAGAAACATAAAAATCTTTGTCATCAGATGAACCGAG
* * * * *
93004324 CATTCGAACAAAACTTGGTTTCAT-TATAGAAATATACAAATCTTTGTCATCAGATGAACC
1 CATTCAAACAAAACTTAGTTTCATCAATAGAAACATAAAAATCTTTGTCATCAGATGAACC
93004384 ATACTAAACA
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
63 31 0.58
64 22 0.42
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (64 bp):
CATTCAAACAAAACTTAGTTTCATCAATAGAAACATAAAAATCTTTGTCATCAGATGAACCGAG
Found at i:93006156 original size:5 final size:5
Alignment explanation
Indices: 93006146--93006170 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
93006136 TAATTCGTGA
93006146 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
93006171 TTCATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:93016886 original size:21 final size:19
Alignment explanation
Indices: 93016860--93016901 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
93016850 AGCAAACTCA
93016860 ATGTCGCAACATAACCCTCCT
1 ATGTCGCAACAT-ACCC-CCT
*
93016881 ATGTCGCGACATACCCCCT
1 ATGTCGCAACATACCCCCT
93016900 AT
1 AT
93016902 TCTTGGTTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 4 0.20
21 11 0.55
ACGTcount: A:0.26, C:0.38, G:0.12, T:0.24
Consensus pattern (19 bp):
ATGTCGCAACATACCCCCT
Found at i:93017302 original size:14 final size:14
Alignment explanation
Indices: 93017263--93017303 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
93017253 ATCCATGAGC
93017263 ATCTCTTTTCTTT-T
1 ATCTC-TTTCTTTAT
93017277 AT-TCTATTCTTTAT
1 ATCTCT-TTCTTTAT
93017291 ATCTCTTTCTTTA
1 ATCTCTTTCTTTA
93017304 GCATTGTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 1 0.04
13 8 0.33
14 12 0.50
15 3 0.12
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.66
Consensus pattern (14 bp):
ATCTCTTTCTTTAT
Found at i:93019146 original size:12 final size:12
Alignment explanation
Indices: 93019131--93019171 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
93019121 GTTTATTCCC
93019131 TGTTTTAAATTT
1 TGTTTTAAATTT
93019143 TGTTTTAAATTT
1 TGTTTTAAATTT
*
93019155 TGTTTT-ATTTT
1 TGTTTTAAATTT
93019166 TGTTTT
1 TGTTTT
93019172 TACTTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (12 bp):
TGTTTTAAATTT
Found at i:93019203 original size:19 final size:20
Alignment explanation
Indices: 93019157--93019210 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
93019147 TTAAATTTTG
*
93019157 TTTTATTTTTGTT--TTTAC
1 TTTTATTTTTATTAATTTAC
93019175 TTTTATTTTTTATTAATTTA-
1 TTTTA-TTTTTATTAATTTAC
93019195 TTTTATTTTTATTAAT
1 TTTTATTTTTATTAAT
93019211 ATTTGTTGTG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
18 5 0.16
19 18 0.56
20 5 0.16
21 4 0.12
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTATTTTTATTAATTTAC
Found at i:93019206 original size:6 final size:6
Alignment explanation
Indices: 93019157--93019207 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
93019147 TTAAATTTTG
* *
93019157 TTTTAT TTTTGT TTTTAC TTTTATT TTTTAT TAATTTA- TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT T--TTTAT TTTTAT TTTTAT
93019207 T
1 T
93019208 AATATTTGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
5 4 0.11
6 23 0.62
7 6 0.16
8 4 0.11
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:93024368 original size:40 final size:39
Alignment explanation
Indices: 93024270--93024492 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
93024260 TCCTCGTTCA
* * * ** * *
93024270 AATGCCTTCGGGACATAGCCCGGAGTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
93024309 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
93024348 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
93024388 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
93024428 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
93024469 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
93024493 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.25
40 108 0.70
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:93024371 original size:79 final size:80
Alignment explanation
Indices: 93024270--93024416 Score: 224
Period size: 79 Copynumber: 1.9 Consensus size: 80
93024260 TCCTCGTTCA
* **
93024270 AATGCCTTCGGGACATAGCCCGGAGTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGAGTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGAT
93024334 TTAACAATTCGCACG
66 TTAACAATTCGCACG
* * * *
93024349 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGAGTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGAT
93024414 TTA
66 TTA
93024417 GTATCTCGCA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
79 33 0.55
80 27 0.45
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
AATGCCTTCGGGACATAACCCGGAGTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGAT
TTAACAATTCGCACG
Found at i:93024426 original size:80 final size:79
Alignment explanation
Indices: 93024268--93024492 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
93024258 GCTCCTCGTT
* * * ** * *
93024268 CAAATGCCTTCGGGACATAGCCCGGAGTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
93024333 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
93024347 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
93024412 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
93024427 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
93024490 GGA
63 GGA
93024493 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 40 0.33
80 77 0.63
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:93024492 original size:120 final size:119
Alignment explanation
Indices: 93024270--93024492 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 119
93024260 TCCTCGTTCA
* * *
93024270 AATGCCTTCGGGACATAGCCCGGAGTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGAGTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
93024335 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * * *
93024389 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGAGTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
93024453 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
93024493 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGAGTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:93032271 original size:40 final size:39
Alignment explanation
Indices: 93032173--93032395 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
93032163 TCCTCGTTCA
* * ** * *
93032173 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
93032212 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
93032251 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
93032291 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
93032331 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
93032372 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
93032396 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 108 0.69
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:93032329 original size:80 final size:79
Alignment explanation
Indices: 93032171--93032395 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
93032161 GCTCCTCGTT
* * ** * *
93032171 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
93032236 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
93032250 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
93032315 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
93032330 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
93032393 GGA
63 GGA
93032396 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 41 0.33
80 77 0.62
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:93032395 original size:120 final size:119
Alignment explanation
Indices: 93032173--93032395 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 119
93032163 TCCTCGTTCA
* * *
93032173 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
93032238 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
93032292 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
93032356 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
93032396 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 38 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:93050306 original size:45 final size:45
Alignment explanation
Indices: 93050242--93050371 Score: 183
Period size: 45 Copynumber: 2.9 Consensus size: 45
93050232 GTTGTACAGT
* * *
93050242 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAGGC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
93050287 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
93050332 ATTTTTCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
93050372 ATAAATTTGG
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 12 0.15
44 14 0.18
45 52 0.67
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.26
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:93053016 original size:45 final size:45
Alignment explanation
Indices: 93052952--93053081 Score: 192
Period size: 45 Copynumber: 2.9 Consensus size: 45
93052942 GTTGTACAGT
* *
93052952 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
93052997 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
93053042 ATTTTTCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
93053082 ATAAATTTGG
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 12 0.15
44 14 0.18
45 53 0.67
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:93061023 original size:45 final size:45
Alignment explanation
Indices: 93060959--93061088 Score: 192
Period size: 45 Copynumber: 2.9 Consensus size: 45
93060949 GTTGTACAGT
* *
93060959 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
93061004 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
93061049 ATTTTTCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
93061089 ATAAATTCAG
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 12 0.15
44 14 0.18
45 53 0.67
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:93063776 original size:60 final size:59
Alignment explanation
Indices: 93063658--93063792 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 59
93063648 GTGTTAACTT
*
93063658 GGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCATTTACAGTATCAGAGTATATTA
1 GGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCATTTACAG-ATCAGAGTATATTA
* * * * *
93063719 GGCCTAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACA-AGTC-GAGATATATTG
1 GGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCAT-TTACAGA-TCAGAG-TATATTA
*
93063779 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
93063793 TAACATAGTT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 51 0.80
61 9 0.14
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (59 bp):
GGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCATTTACAGATCAGAGTATATTA
Found at i:93081974 original size:5 final size:5
Alignment explanation
Indices: 93081951--93082001 Score: 68
Period size: 5 Copynumber: 10.4 Consensus size: 5
93081941 CATCAGCTTC
* * *
93081951 TGATA TG-TT TGAAA TGATA TGATA TGATA TGATA TGTTA TGATA TGATA
1 TGATA TGATA TGATA TGATA TGATA TGATA TGATA TGATA TGATA TGATA
93082000 TG
1 TG
93082002 TGATGAAGGA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
4 3 0.08
5 36 0.92
ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43
Consensus pattern (5 bp):
TGATA
Found at i:93081984 original size:15 final size:14
Alignment explanation
Indices: 93081951--93082007 Score: 69
Period size: 15 Copynumber: 3.9 Consensus size: 14
93081941 CATCAGCTTC
* *
93081951 TGATATGTTTGAAA
1 TGATATGTATGATA
93081965 TGATATGATATGATA
1 TGATATG-TATGATA
93081980 TGATATGTTATGATA
1 TGATATG-TATGATA
93081995 TGATATGTGATGA
1 TGATATGT-ATGA
93082008 AGGAGAAGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
14 8 0.21
15 30 0.79
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (14 bp):
TGATATGTATGATA
Found at i:93083699 original size:16 final size:17
Alignment explanation
Indices: 93083678--93083711 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
93083668 CATTTTGATG
93083678 TAAATGAATCAAA-ATA
1 TAAATGAATCAAAGATA
*
93083694 TAAATGTATCAAAGATA
1 TAAATGAATCAAAGATA
93083711 T
1 T
93083712 GATGAATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.29
Consensus pattern (17 bp):
TAAATGAATCAAAGATA
Found at i:93083968 original size:68 final size:68
Alignment explanation
Indices: 93083856--93084008 Score: 252
Period size: 68 Copynumber: 2.2 Consensus size: 68
93083846 GCGAATTCTC
* *
93083856 CACAGCTCGTTTGAGCAGCATCGTGTAGCTTACATTCTGACCCACTACTCGTGTGAGCAGGCCCA
1 CACAGCTCGTGTGAGCAGCATCGTGTAGCTTACATTCTGACCCACTACTCGTGTGAGCAAGCCCA
93083921 TTT
66 TTT
* *
93083924 CACAGCTCGTGTGAGTAGCATCGTGTAGCTTACATTCTGGCCCACTACTCGTGTGAGCAAGCCCA
1 CACAGCTCGTGTGAGCAGCATCGTGTAGCTTACATTCTGACCCACTACTCGTGTGAGCAAGCCCA
93083989 TTT
66 TTT
* *
93083992 CACAGTTTGTGTGAGCA
1 CACAGCTCGTGTGAGCA
93084009 TGGATGTAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 78 1.00
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (68 bp):
CACAGCTCGTGTGAGCAGCATCGTGTAGCTTACATTCTGACCCACTACTCGTGTGAGCAAGCCCA
TTT
Found at i:93091817 original size:45 final size:45
Alignment explanation
Indices: 93091650--93091864 Score: 271
Period size: 45 Copynumber: 4.8 Consensus size: 45
93091640 TATCGTACGG
*
93091650 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATGAAAT--CGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTAT--AATGCCGGTGAGA
*
93091695 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
93091740 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATTCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
** *
93091785 TACTATTCGGGCCTTCAAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
93091830 TGA-TA-TCGAG-CTTCGAGCCTAGCAGGCGA-AATGCC
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
93091865 AGTGGATGAA
Statistics
Matches: 154, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
42 6 0.04
43 19 0.12
44 4 0.03
45 124 0.81
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:93100839 original size:23 final size:23
Alignment explanation
Indices: 93100792--93100839 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
93100782 TATTTGTATG
*
93100792 ATTTATTAATGCATGAAGATTTC
1 ATTTATTAATGCATGAAGATATC
*
93100815 ATTTATTATTGGCATGAA-ATATC
1 ATTTATTAAT-GCATGAAGATATC
93100838 AT
1 AT
93100840 AGAAATGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.44
Consensus pattern (23 bp):
ATTTATTAATGCATGAAGATATC
Found at i:93110979 original size:26 final size:26
Alignment explanation
Indices: 93110943--93110998 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
93110933 TGATAAAAAT
93110943 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93110969 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93110995 TGAT
1 TGAT
93110999 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93115981 original size:34 final size:34
Alignment explanation
Indices: 93115932--93116028 Score: 142
Period size: 34 Copynumber: 2.9 Consensus size: 34
93115922 TTTAAATTTT
* *
93115932 TTTAAA-AAAAATAATTAAATTAGGTTTTAGGGG
1 TTTAAAGAAAATTAATTAAATTAGGGTTTAGGGG
* * *
93115965 TTTAAAGTAAATTAATTAAATTAGGGTTTATGGT
1 TTTAAAGAAAATTAATTAAATTAGGGTTTAGGGG
93115999 TTTAAAGAAAATTAATTAAATTAGGGTTTA
1 TTTAAAGAAAATTAATTAAATTAGGGTTTA
93116029 CGTTTTTTTC
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 6 0.11
34 51 0.89
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.40
Consensus pattern (34 bp):
TTTAAAGAAAATTAATTAAATTAGGGTTTAGGGG
Found at i:93116412 original size:126 final size:125
Alignment explanation
Indices: 93116131--93116629 Score: 563
Period size: 125 Copynumber: 4.0 Consensus size: 125
93116121 TTTGTTTCTA
* * *
93116131 AAAAATTAATTTTGAGAAGATGATTCTGAAAAAATAATGTCAAAAATGCTTTAAGCATGATGCAC
1 AAAAA-TAATTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAAATGCTTCAAGCAGGATGCAC
* * * * * * * *
93116196 TGTTAGAAAAAGTACTG-AAAAAGCTCTCATGTGGATGCTCTTTTTCTATAATAGTTCCTG
65 TGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTCTTTTTCTACAGTAGTTCCTG
* * *
93116256 AAAAAATAATTTTGAGAAGAC-AGTTCTGAAAAAATAATGTAAAAAACGCTTCAAGCATGATGCA
1 -AAAAATAATTTTGAGAAGACGA-TTCTGAAAAAATAATGTCAAAAATGCTTCAAGCAGGATGCA
* * * *
93116320 CTATCAGCAAAGTTATTGAAAAAAACTCCCACGTGGATGCTCTTTTTCTACAGTAGTTCTTG
64 CTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTCTTTTTCTACAGTAGTTCCTG
* * * * * * *
93116382 AAATAATATTTTTAAGAAAATGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAAGTAGGATGCAC
1 AAA-AATAATTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAAATGCTTCAAGCAGGATGCAC
* * * * * * *
93116447 TGTCAGCAAAATTACTGAAAAAAGCTCTCACATGAACGTTCTTTTTCTACAGTAATTCCTG
65 TGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTCTTTTTCTACAGTAGTTCCTG
* * * * * *
93116508 AAAAATAATTTTGAGAAGACGATTATGAAAAAGTAGTTTTAGAAATGCTTCAAGCAGGATGCACT
1 AAAAATAATTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAAATGCTTCAAGCAGGATGCACT
* * *
93116573 GTCAGCAAAATTACT-AAAAAAAGGTTCCATGTGGATGCTCTTTTTCTACAGTAGTTC
66 GTCAGCAAAATTACTGAAAAAAA-CTCCCACGTGGATGCTCTTTTTCTACAGTAGTTC
93116630 TTGCTTGGTA
Statistics
Matches: 310, Mismatches: 58, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
124 7 0.02
125 158 0.51
126 145 0.47
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (125 bp):
AAAAATAATTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAAATGCTTCAAGCAGGATGCACT
GTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTCTTTTTCTACAGTAGTTCCTG
Found at i:93116609 original size:251 final size:251
Alignment explanation
Indices: 93116140--93116632 Score: 650
Period size: 251 Copynumber: 2.0 Consensus size: 251
93116130 AAAAAATTAA
* * * * *
93116140 TTTTGAGAAGATGATTCTGAAAAAATAATGTCAAAAATGCTTTAAGCATGATGCACTGTTAGAAA
1 TTTTAAGAAAATGATTCTGAAAAAATAATGTCAAAAATGCTTCAAGCAGGATGCACTGTCAGAAA
** * * * *
93116205 AAGTACTGAAAAAGCTCTCATGTGGATGCTCTTTTTCTATAATAGTTCCTGAAAAAATAATTTTG
66 AAGTACTGAAAAAGCTCTCACATGAACGCTCTTTTTCTACAATAATTCCTGAAAAAATAATTTTG
* * *
93116270 AGAAGACAGTTCTGAAAAAATAATGTAAAAAACGCTTCAAGCATGATGCACTATCAGCAAAGTTA
131 AGAAGACAGTTATGAAAAAATAATGTAAAAAACGCTTCAAGCAGGATGCACTATCAGCAAAATTA
*
93116335 TTGAAAAAAACTCCCACGTGGATGCTCTTTTTCTACAGTAGTTCTTGAAATAATAT
196 CTGAAAAAAACTCCCACGTGGATGCTCTTTTTCTACAGTAGTTCTTGAAATAATAT
* * * *
93116391 TTTTAAGAAAATGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAAGTAGGATGCACTGTCAGCAA
1 TTTTAAGAAAATGATTCTGAAAAAATAATGTCAAAAATGCTTCAAGCAGGATGCACTGTCAGAAA
* * *
93116456 AATTACTGAAAAAAGCTCTCACATGAACGTTCTTTTTCTACAGTAATTCCTG-AAAAATAATTTT
66 AAGTACTG-AAAAAGCTCTCACATGAACGCTCTTTTTCTACAATAATTCCTGAAAAAATAATTTT
* * * * * * *
93116520 GAGAAGAC-GATTATGAAAAAGTAGTTTTAGAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAT
130 GAGAAGACAG-TTATGAAAAAATAATGTAAAAAACGCTTCAAGCAGGATGCACTATCAGCAAAAT
* * *
93116584 TACT-AAAAAAAGGTTCCATGTGGATGCTCTTTTTCTACAGTAGTTCTTG
194 TACTGAAAAAAA-CTCCCACGTGGATGCTCTTTTTCTACAGTAGTTCTTG
93116633 CTTGGTATTA
Statistics
Matches: 207, Mismatches: 32, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
250 8 0.04
251 164 0.79
252 35 0.17
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (251 bp):
TTTTAAGAAAATGATTCTGAAAAAATAATGTCAAAAATGCTTCAAGCAGGATGCACTGTCAGAAA
AAGTACTGAAAAAGCTCTCACATGAACGCTCTTTTTCTACAATAATTCCTGAAAAAATAATTTTG
AGAAGACAGTTATGAAAAAATAATGTAAAAAACGCTTCAAGCAGGATGCACTATCAGCAAAATTA
CTGAAAAAAACTCCCACGTGGATGCTCTTTTTCTACAGTAGTTCTTGAAATAATAT
Found at i:93120163 original size:18 final size:18
Alignment explanation
Indices: 93120126--93120163 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
93120116 GGAAAAGGAA
* *
93120126 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGAAT
93120144 ACATATAAGGGCTAGAAT
1 ACATATAAGGGCTAGAAT
93120162 AC
1 AC
93120164 GCACCTGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAGAAT
Found at i:93125451 original size:29 final size:30
Alignment explanation
Indices: 93125387--93125454 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
93125377 AATATTAAAA
* *
93125387 TTATACATGAATTATGGTTTAATGTGTAATT
1 TTATACATGAATTATGATTT-ATGTGCAATT
*
93125418 GTATACATGAACTT-TGATTT-TGTGCAATT
1 TTATACATGAA-TTATGATTTATGTGCAATT
93125447 TTATACAT
1 TTATACAT
93125455 AAAATTTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 15 0.47
31 15 0.47
32 2 0.06
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.47
Consensus pattern (30 bp):
TTATACATGAATTATGATTTATGTGCAATT
Found at i:93125660 original size:31 final size:31
Alignment explanation
Indices: 93125602--93125662 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
93125592 ATATGTATGA
* *
93125602 TTAAATCAAAATTAAAATTTAAAATATATAT
1 TTAAACCAAAATTAAAAATTAAAATATATAT
* * *
93125633 TTAAACCATAATTAAAAATTCACATATATA
1 TTAAACCAAAATTAAAAATTAAAATATATA
93125663 ATAACTCCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (31 bp):
TTAAACCAAAATTAAAAATTAAAATATATAT
Found at i:93129895 original size:2 final size:2
Alignment explanation
Indices: 93129888--93129912 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
93129878 ATCTGAGGTT
93129888 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
93129913 TTCTAACTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:93132716 original size:26 final size:25
Alignment explanation
Indices: 93132675--93132725 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
93132665 AACTTTTGAC
93132675 AATTTAAAAATAAAAAG-TGAAAATT
1 AATTTAAAAATAAAAAGAT-AAAATT
*
93132700 AATTTAAAAAATTAAAAGATAAAATT
1 AATTT-AAAAATAAAAAGATAAAATT
93132726 TATTCTGGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.22
26 17 0.74
27 1 0.04
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (25 bp):
AATTTAAAAATAAAAAGATAAAATT
Found at i:93137545 original size:21 final size:20
Alignment explanation
Indices: 93137519--93137569 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
93137509 AGCGGTGGCA
93137519 GTGAGATTAATTACTGTAGCG
1 GTGAGATTAA-TACTGTAGCG
*
93137540 GTGAGATTGGATACTGTAGCG
1 GTGAGATT-AATACTGTAGCG
93137561 GTGAGATTA
1 GTGAGATTA
93137570 GAAACAATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.27, C:0.08, G:0.33, T:0.31
Consensus pattern (20 bp):
GTGAGATTAATACTGTAGCG
Found at i:93145717 original size:10 final size:10
Alignment explanation
Indices: 93145702--93145739 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
93145692 TATGTTTAGT
93145702 TTTAATTAAG
1 TTTAATTAAG
93145712 TTTAATTAA-
1 TTTAATTAAG
93145721 TTTAATTAAG
1 TTTAATTAAG
*
93145731 ATTAATTAA
1 TTTAATTAA
93145740 TTACTAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (10 bp):
TTTAATTAAG
Found at i:93145726 original size:19 final size:19
Alignment explanation
Indices: 93145702--93145741 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
93145692 TATGTTTAGT
*
93145702 TTTAATTAAGTTTAATTAA
1 TTTAATTAAGATTAATTAA
93145721 TTTAATTAAGATTAATTAA
1 TTTAATTAAGATTAATTAA
93145740 TT
1 TT
93145742 ACTAACCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
TTTAATTAAGATTAATTAA
Found at i:93146960 original size:115 final size:118
Alignment explanation
Indices: 93146805--93147101 Score: 302
Period size: 120 Copynumber: 2.5 Consensus size: 118
93146795 GTATACCAAA
* * * * **
93146805 GATATTTGTGACACAGGTTTAG-CTCGGA-TGAGTAATCTGATGTCAATTTAAAGGTTTAGACT-
1 GATACTTGGGACATAGGTTTAGCCT-GGACT-AGTAACCTGATGTCGTTTTAAAGGTTTAG-CTC
* * ** *
93146867 AAACAAGTAACCTG-A-CAT-TATTTTCAGCTTGGATGAGCAATTGAT-TTATCAAG
63 AAACAAGTAACCTGCAGCATATATTTTCAACTAGGACAAACAATTGATGTT-TCAAG
* *
93146920 GATACTTGGGACATAGGTTTAGCCTGGACTAGTAACCTGATGTCGTTTTAAAGATTTAGCTCGAA
1 GATACTTGGGACATAGGTTTAGCCTGGACTAGTAACCTGATGTCGTTTTAAAGGTTTAGCTCAAA
* * *
93146985 CAAGTAACTTGTCATGTATATATTTTCAACTAGGACAAACAATTGATGTTTCGAG
66 CAAGTAACCTG-CA-GCATATATTTTCAACTAGGACAAACAATTGATGTTTCAAG
* ** * *
93147040 AATACTTGGGACATAGGTTTAGCCTAAACTGGTAACTTGATGTCGTTTTAAAGGTTTAGCTC
1 GATACTTGGGACATAGGTTTAGCCTGGACTAGTAACCTGATGTCGTTTTAAAGGTTTAGCTC
93147102 GGACGAGTAA
Statistics
Matches: 151, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
114 2 0.01
115 59 0.39
116 3 0.02
117 1 0.01
119 2 0.01
120 82 0.54
121 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (118 bp):
GATACTTGGGACATAGGTTTAGCCTGGACTAGTAACCTGATGTCGTTTTAAAGGTTTAGCTCAAA
CAAGTAACCTGCAGCATATATTTTCAACTAGGACAAACAATTGATGTTTCAAG
Found at i:93147059 original size:120 final size:120
Alignment explanation
Indices: 93146904--93147127 Score: 333
Period size: 120 Copynumber: 1.9 Consensus size: 120
93146894 CTTGGATGAG
* **
93146904 CAATTGATTTATCAAGGATACTTGGGACATAGGTTTAGCCTGGACTAGTAACCTGATGTCGTTTT
1 CAATTGATTTATCAAGAATACTTGGGACATAGGTTTAGCCTAAACTAGTAACCTGATGTCGTTTT
*
93146969 AAAGATTTAGCTCGAACAAGTAACTTGTCATGTATATATTTTCAACTAGGACAAA
66 AAAGATTTAGCTCGAACAAGTAACTTGACATGTATATATTTTCAACTAGGACAAA
* * *
93147024 CAATTGATGTT-TCGAGAATACTTGGGACATAGGTTTAGCCTAAACTGGTAACTTGATGTCGTTT
1 CAATTGAT-TTATCAAGAATACTTGGGACATAGGTTTAGCCTAAACTAGTAACCTGATGTCGTTT
* * * *
93147088 TAAAGGTTTAGCTCGGACGAGTAACTTGACATGTGTATAT
65 TAAAGATTTAGCTCGAACAAGTAACTTGACATGTATATAT
93147128 ATATTAAACT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
120 90 0.98
121 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (120 bp):
CAATTGATTTATCAAGAATACTTGGGACATAGGTTTAGCCTAAACTAGTAACCTGATGTCGTTTT
AAAGATTTAGCTCGAACAAGTAACTTGACATGTATATATTTTCAACTAGGACAAA
Found at i:93163852 original size:18 final size:18
Alignment explanation
Indices: 93163829--93163864 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
93163819 TCACACTACT
*
93163829 GTGTATCACCATACGGCC
1 GTGTATCACCACACGGCC
*
93163847 GTGTATCGCCACACGGCC
1 GTGTATCACCACACGGCC
93163865 TCCACATGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.36, G:0.25, T:0.19
Consensus pattern (18 bp):
GTGTATCACCACACGGCC
Found at i:93166746 original size:41 final size:41
Alignment explanation
Indices: 93166655--93166837 Score: 217
Period size: 41 Copynumber: 4.4 Consensus size: 41
93166645 CGTTTTACCA
* * * * * *
93166655 AAAATGCCGCTAAAA-ACAGAGCAATAGCGGCGTTTTTTTGTT
1 AAAACGCCGCTAAAAGTCGGAGCAATAGCGGCG--CTTTCGGT
**
93166697 AAAACGCCGCTAAAAGTCGGAGCAATAGCTACGCTTTCGGT
1 AAAACGCCGCTAAAAGTCGGAGCAATAGCGGCGCTTTCGGT
93166738 AAAACGCCGCTAAAAGTC-GAGCCAATAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAGTCGGAG-CAATAGCGGCGCTTTCGGT
* * **
93166779 AAAACGCCGCTAAAAGTCGGACCAATAGCGGCGCTTTTGAA
1 AAAACGCCGCTAAAAGTCGGAGCAATAGCGGCGCTTTCGGT
93166820 AAAACGCCGCTAAAAGTC
1 AAAACGCCGCTAAAAGTC
93166838 ATATAATCCT
Statistics
Matches: 124, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
40 3 0.02
41 92 0.74
42 16 0.13
43 13 0.10
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGTCGGAGCAATAGCGGCGCTTTCGGT
Found at i:93167708 original size:7 final size:7
Alignment explanation
Indices: 93167698--93167757 Score: 52
Period size: 8 Copynumber: 8.4 Consensus size: 7
93167688 CATTAAACCG
93167698 AAATAAA
1 AAATAAA
93167705 AAAT--A
1 AAATAAA
*
93167710 AACTAAA
1 AAATAAA
93167717 AAATTAAA
1 AAA-TAAA
*
93167725 AATTAAA
1 AAATAAA
93167732 AAATTAAA
1 AAA-TAAA
*
93167740 AAATTTAA
1 AAA-TAAA
93167748 AAATAAA
1 AAATAAA
93167755 AAA
1 AAA
93167758 CTTAAAAATT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
5 4 0.09
7 19 0.44
8 20 0.47
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.22
Consensus pattern (7 bp):
AAATAAA
Found at i:93167726 original size:8 final size:8
Alignment explanation
Indices: 93167713--93167770 Score: 75
Period size: 8 Copynumber: 7.4 Consensus size: 8
93167703 AAAAATAAAC
93167713 TAAAAAAT
1 TAAAAAAT
93167721 T-AAAAAT
1 TAAAAAAT
93167728 TAAAAAAT
1 TAAAAAAT
93167736 TAAAAAAT
1 TAAAAAAT
*
93167744 TTAAAAA-
1 TAAAAAAT
93167751 TAAAAAACT
1 TAAAAAA-T
*
93167760 TAAAAATT
1 TAAAAAAT
93167768 TAA
1 TAA
93167771 TATTTAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
7 13 0.30
8 25 0.57
9 6 0.14
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.28
Consensus pattern (8 bp):
TAAAAAAT
Found at i:93167743 original size:23 final size:23
Alignment explanation
Indices: 93167709--93167770 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
93167699 AATAAAAAAT
93167709 AAAC-TAAAAAATTAAAAATTAAA
1 AAACTTAAAAAATTAAAAA-TAAA
93167732 AAA-TTAAAAAATTTAAAAATAAA
1 AAACTTAAAAAA-TTAAAAATAAA
*
93167755 AAACTTAAAAATTTAA
1 AAACTTAAAAAATTAA
93167771 TATTTAATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
23 21 0.60
24 14 0.40
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (23 bp):
AAACTTAAAAAATTAAAAATAAA
Found at i:93172933 original size:19 final size:21
Alignment explanation
Indices: 93172905--93172953 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
93172895 TTATTATTTA
93172905 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
93172925 TTTTA-TTTTTATTTTAATATT
1 TTTTAGTTTTGATTCTAATA-T
93172946 TTTTAGTT
1 TTTTAGTT
93172954 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 10 0.42
20 6 0.25
21 6 0.25
22 2 0.08
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:93172934 original size:20 final size:20
Alignment explanation
Indices: 93172905--93172953 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
93172895 TTATTATTTA
93172905 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTT-ATTCTAATAT
* *
93172925 TTTTATTTTTATTTTAATATT
1 TTTTAGTTTTATTCTAATA-T
93172946 TTTTAGTT
1 TTTTAGTT
93172954 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 6 0.25
20 10 0.42
21 8 0.33
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.69
Consensus pattern (20 bp):
TTTTAGTTTTATTCTAATAT
Found at i:93173380 original size:16 final size:16
Alignment explanation
Indices: 93173359--93173410 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
93173349 TTTGGTTCGC
93173359 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
93173375 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
93173391 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
93173407 TGTA
1 TGTA
93173411 ATAGCAAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:93173663 original size:16 final size:16
Alignment explanation
Indices: 93173626--93173667 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
93173616 TTAATCATAT
*
93173626 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
93173642 TT-AAATATATTATAA
1 TTAAAATATATTATAA
93173657 TTAAAATATAT
1 TTAAAATATAT
93173668 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:93173674 original size:14 final size:15
Alignment explanation
Indices: 93173635--93173676 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
93173625 TTTAAACATA
*
93173635 ATTATTATTAAATAT
1 ATTATAATTAAATAT
93173650 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
93173664 A-TATAATTTAATA
1 ATTATAATTAAATA
93173677 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:93173726 original size:61 final size:61
Alignment explanation
Indices: 93173661--93173848 Score: 215
Period size: 61 Copynumber: 3.1 Consensus size: 61
93173651 TTATAATTAA
93173661 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * * *
93173722 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATATTAAAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCAAATCAT
93173781 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
93173842 AATATAT
1 AATATAT
93173849 GATACTATAA
Statistics
Matches: 97, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
58 1 0.01
59 32 0.33
60 24 0.25
61 39 0.40
62 1 0.01
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:93173779 original size:120 final size:120
Alignment explanation
Indices: 93173629--93173858 Score: 451
Period size: 120 Copynumber: 1.9 Consensus size: 120
93173619 ATCATATTTA
*
93173629 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTAAAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
93173694 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
93173749 AACATAATTATTATTAAATATATTAAAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTAAAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
93173814 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
93173859 TTTACTCAAA
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 109 1.00
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTAAAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:93173847 original size:59 final size:59
Alignment explanation
Indices: 93173664--93173847 Score: 180
Period size: 59 Copynumber: 3.1 Consensus size: 59
93173654 TAATTAAAAT
93173664 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
* * * * * * * * * *
93173723 ATAT-ATGATACTATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATATTAAAATTAAAA
1 ATATAAT-TTA--ATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCAAA-TCATA
93173783 TATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 -ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
93173843 ATATA
1 ATATA
93173848 TGATACTATA
Statistics
Matches: 93, Mismatches: 20, Indels: 24
0.68 0.15 0.18
Matches are distributed among these distances:
58 2 0.02
59 32 0.34
60 30 0.32
61 27 0.29
62 2 0.02
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
Found at i:93181903 original size:19 final size:20
Alignment explanation
Indices: 93181881--93181920 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
93181871 ATATAATTTT
*
93181881 TTTAAAAAT-AAAATAAAAA
1 TTTAAAAATCAAAAAAAAAA
*
93181900 TTTAAAATTCAAAAAAAAAA
1 TTTAAAAATCAAAAAAAAAA
93181920 T
1 T
93181921 CTCAAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
TTTAAAAATCAAAAAAAAAA
Found at i:93184601 original size:21 final size:21
Alignment explanation
Indices: 93184557--93184640 Score: 105
Period size: 21 Copynumber: 4.0 Consensus size: 21
93184547 ACGAGCTGCT
* ** *
93184557 CACACGGGCATGTGTCCCCGC
1 CACACGGGCGTGTGTGGCCTC
* *
93184578 CACATGGGCGTGCGTGGCCTC
1 CACACGGGCGTGTGTGGCCTC
*
93184599 CACACAGGCGTGTGTGGCCTC
1 CACACGGGCGTGTGTGGCCTC
93184620 CACACGGGCGTGTGTGGCCTC
1 CACACGGGCGTGTGTGGCCTC
93184641 TACATGAGCG
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.12, C:0.36, G:0.35, T:0.18
Consensus pattern (21 bp):
CACACGGGCGTGTGTGGCCTC
Found at i:93184651 original size:21 final size:21
Alignment explanation
Indices: 93184577--93184653 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
93184567 TGTGTCCCCG
* *
93184577 CCACATGGGCGTGCGTGGCCT
1 CCACATGAGCGTGTGTGGCCT
*
93184598 CCACA-CAGGCGTGTGTGGCCT
1 CCACATGA-GCGTGTGTGGCCT
* *
93184619 CCACACGGGCGTGTGTGGCCT
1 CCACATGAGCGTGTGTGGCCT
*
93184640 CTACATGAGCGTGT
1 CCACATGAGCGTGT
93184654 AGACCCCTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.13, C:0.31, G:0.35, T:0.21
Consensus pattern (21 bp):
CCACATGAGCGTGTGTGGCCT
Found at i:93192809 original size:25 final size:26
Alignment explanation
Indices: 93192775--93192825 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
93192765 TTAGAGAAAT
93192775 GGACTAAGTGATC-TTTAATGCAAAA
1 GGACTAAGTGATCTTTTAATGCAAAA
93192800 GGACTAAGTGATCTTTTAATGCAAAA
1 GGACTAAGTGATCTTTTAATGCAAAA
93192826 CTGAATTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (26 bp):
GGACTAAGTGATCTTTTAATGCAAAA
Found at i:93193515 original size:20 final size:19
Alignment explanation
Indices: 93193486--93193523 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
93193476 AAAGTAGTCT
*
93193486 AATTTATTTTCTTAGAATA
1 AATTTATTTTCTGAGAATA
93193505 AATTCTATTTTCTGAGAAT
1 AATT-TATTTTCTGAGAAT
93193524 TACAATTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.34, C:0.08, G:0.08, T:0.50
Consensus pattern (19 bp):
AATTTATTTTCTGAGAATA
Found at i:93203348 original size:215 final size:215
Alignment explanation
Indices: 93202977--93203409 Score: 785
Period size: 215 Copynumber: 2.0 Consensus size: 215
93202967 AATATTATAT
93202977 TTTTGTCTGCTAATTGAATGCTCATCCTAGTCTGTTTGGGTTTCCCAAGACCTAGTTGTTTAAAC
1 TTTTGTCTGCTAATTGAATGCTCATCCTAGTCTGTTTGGGTTTCCCAAGACCTAGTTGTTTAAAC
* *
93203042 ATTTTGTAAGGCATGACGTTAATACTAGTCCCTAAATCAGCTAGTGCATTATTAACTTCTAAACT
66 ATTTTGTAAGGCATGACGTTAATACTAGTCCCTAAATCAGCTAATGCATTATTAACATCTAAACT
*
93203107 ACCAATTAAGCAAGGAATTGTAAAACTCCCTAGATCTTTGAATTTGTTGGGTACTTTATTCTGTA
131 ACCAATTAAGCAAGGAATTGTAAAACTCCCTAGATCTTTCAATTTGTTGGGTACTTTATTCTGTA
*
93203172 GAATAGCAGAGCAAACTGCG
196 GAATAGCAGAGCAAACCGCG
*
93203192 TTTTGTCTGCTAATTGAATGCTCATCCTAGTCTGTTTGGGTTTCCCAAGACCTAGTTGTTTCAAC
1 TTTTGTCTGCTAATTGAATGCTCATCCTAGTCTGTTTGGGTTTCCCAAGACCTAGTTGTTTAAAC
*
93203257 ATTTTGTAAGGCATGATGTTAATACTAGTCCCTAAATCAGCTAATGCATTATTAACATCTAAACT
66 ATTTTGTAAGGCATGACGTTAATACTAGTCCCTAAATCAGCTAATGCATTATTAACATCTAAACT
* * *
93203322 ACCAATTAAGCAAGGAATTGTAAAACTCCTTGGATCTTTCAATTTGTTGGGTAGTTTATTCTGTA
131 ACCAATTAAGCAAGGAATTGTAAAACTCCCTAGATCTTTCAATTTGTTGGGTACTTTATTCTGTA
93203387 GAATAGCAGAGCAAACCGCG
196 GAATAGCAGAGCAAACCGCG
93203407 TTT
1 TTT
93203410 AGCTTCACAT
Statistics
Matches: 209, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
215 209 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (215 bp):
TTTTGTCTGCTAATTGAATGCTCATCCTAGTCTGTTTGGGTTTCCCAAGACCTAGTTGTTTAAAC
ATTTTGTAAGGCATGACGTTAATACTAGTCCCTAAATCAGCTAATGCATTATTAACATCTAAACT
ACCAATTAAGCAAGGAATTGTAAAACTCCCTAGATCTTTCAATTTGTTGGGTACTTTATTCTGTA
GAATAGCAGAGCAAACCGCG
Found at i:93205208 original size:19 final size:19
Alignment explanation
Indices: 93205171--93205208 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
93205161 ACCTACCAGA
*
93205171 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
93205190 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
93205209 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:93207776 original size:82 final size:82
Alignment explanation
Indices: 93207639--93207803 Score: 294
Period size: 82 Copynumber: 2.0 Consensus size: 82
93207629 ACAATTTTAG
* *
93207639 GGAATCATGACTGCGGACCCAAATCAACTTTTAAAGTGTTTCTTACAAATTTGCGATACATTCAA
1 GGAATCATGACTGCGAACCCAAATCAACATTTAAAGTGTTTCTTACAAATTTGCGATACATTCAA
*
93207704 ATTTAATAGTGCCACTA
66 ATTTAATAGAGCCACTA
93207721 GGAATCATGACTGCGAACCCAAATCAACATTTAAAGTGTTTCTTACAAATTTGCGATACATTCAA
1 GGAATCATGACTGCGAACCCAAATCAACATTTAAAGTGTTTCTTACAAATTTGCGATACATTCAA
*
93207786 ATTTAATAGAGTCACTA
66 ATTTAATAGAGCCACTA
93207803 G
1 G
93207804 TGACACTATT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.31
Consensus pattern (82 bp):
GGAATCATGACTGCGAACCCAAATCAACATTTAAAGTGTTTCTTACAAATTTGCGATACATTCAA
ATTTAATAGAGCCACTA
Found at i:93210722 original size:9 final size:9
Alignment explanation
Indices: 93210708--93210818 Score: 116
Period size: 9 Copynumber: 12.4 Consensus size: 9
93210698 TGTGGTTAAA
93210708 AATTAACCG
1 AATTAACCG
**
93210717 AATTAAATG
1 AATTAACCG
*
93210726 AGTTAACCG
1 AATTAACCG
93210735 AATTAACCG
1 AATTAACCG
93210744 AATTAACCG
1 AATTAACCG
*
93210753 GATTAACCG
1 AATTAACCG
* *
93210762 GATTAATCG
1 AATTAACCG
* **
93210771 GATTAATTG
1 AATTAACCG
*
93210780 AATTAACTG
1 AATTAACCG
93210789 AATTAACCG
1 AATTAACCG
93210798 AATTAACCG
1 AATTAACCG
*
93210807 AA-TACCCG
1 AATTAACCG
93210815 AATT
1 AATT
93210819 GAATCACTAC
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
8 7 0.08
9 81 0.92
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:93210868 original size:20 final size:20
Alignment explanation
Indices: 93210818--93210906 Score: 73
Period size: 17 Copynumber: 4.8 Consensus size: 20
93210808 ATACCCGAAT
93210818 TGAATCACTACATAA-T-TA
1 TGAATCACTACATAAGTCTA
* * * *
93210836 -AAAACATTACATAAGTCTT
1 TGAATCACTACATAAGTCTA
93210855 TGAATCACTACATAA-T-TA
1 TGAATCACTACATAAGTCTA
** *
93210873 AAAAT-ATTACATAAGTCTA
1 TGAATCACTACATAAGTCTA
93210892 TGAATCACTACATAA
1 TGAATCACTACATAA
93210907 TTAAAAACAT
Statistics
Matches: 51, Mismatches: 14, Indels: 10
0.68 0.19 0.13
Matches are distributed among these distances:
17 19 0.37
18 6 0.12
19 7 0.14
20 19 0.37
ACGTcount: A:0.47, C:0.16, G:0.06, T:0.31
Consensus pattern (20 bp):
TGAATCACTACATAAGTCTA
Found at i:93210948 original size:72 final size:72
Alignment explanation
Indices: 93210817--93210966 Score: 266
Period size: 72 Copynumber: 2.1 Consensus size: 72
93210807 AATACCCGAA
*
93210817 TTGAATCACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAATATTA
1 TTGAATCACTACATAATTAAAAACATTACA-AAGTCTTTGAATCACTACATAATTAAAAACATTA
93210882 CATAAGTC
65 CATAAGTC
93210890 TATGAATCACTACATAATTAAAAACATTAC-AAGTCTTTGAATCACTACATAATTAAAAACATTA
1 T-TGAATCACTACATAATTAAAAACATTACAAAGTCTTTGAATCACTACATAATTAAAAACATTA
93210954 CATAAGTC
65 CATAAGTC
93210962 TTGAA
1 TTGAA
93210967 ATTAACACAT
Statistics
Matches: 75, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
71 4 0.05
72 42 0.56
73 1 0.01
74 28 0.37
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (72 bp):
TTGAATCACTACATAATTAAAAACATTACAAAGTCTTTGAATCACTACATAATTAAAAACATTAC
ATAAGTC
Found at i:93210980 original size:37 final size:37
Alignment explanation
Indices: 93210817--93210963 Score: 262
Period size: 37 Copynumber: 4.0 Consensus size: 37
93210807 AATACCCGAA
93210817 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
93210854 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
93210891 ATGAATCACTACATAATTAAAAACATTAC--AAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
93210926 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
93210963 T
1 T
93210964 GAAATTAACA
Statistics
Matches: 104, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
35 34 0.33
37 70 0.67
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.33
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:93213422 original size:19 final size:20
Alignment explanation
Indices: 93213386--93213444 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 20
93213376 ACAAGAAAAA
93213386 AATTATATAATAACTTAAAATAC
1 AATT-TATAAT-A-TTAAAATAC
93213409 -ATTTATAATATTAAAATAC
1 AATTTATAATATTAAAATAC
93213428 ATATTTATAATATTAAA
1 A-ATTTATAATATTAAA
93213445 CAATTTTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.26
20 1 0.03
21 21 0.62
22 3 0.09
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
AATTTATAATATTAAAATAC
Found at i:93213512 original size:12 final size:11
Alignment explanation
Indices: 93213492--93213525 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
93213482 AGAATACTTG
93213492 TTAAATAAAAT
1 TTAAATAAAAT
*
93213503 TTATAATAAAAA
1 TTA-AATAAAAT
93213515 TTAAATAAAAT
1 TTAAATAAAAT
93213526 ATTGGTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TTAAATAAAAT
Found at i:93214082 original size:14 final size:14
Alignment explanation
Indices: 93214063--93214092 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93214053 TTAGTTTTAG
93214063 TAGATTTTTACTTT
1 TAGATTTTTACTTT
*
93214077 TAGATTTTTATTTT
1 TAGATTTTTACTTT
93214091 TA
1 TA
93214093 TTTATTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.67
Consensus pattern (14 bp):
TAGATTTTTACTTT
Found at i:93221353 original size:15 final size:15
Alignment explanation
Indices: 93221318--93221369 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
93221308 TTAAGAATTT
*
93221318 TATTAAATTAT-ATA
1 TATTTAATTATAATA
93221332 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
93221346 TATTTAATAATAAT-
1 TATTTAATTATAATA
93221360 TATGTTAATT
1 TAT-TTAATT
93221370 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:93221377 original size:59 final size:59
Alignment explanation
Indices: 93221305--93221487 Score: 176
Period size: 59 Copynumber: 3.0 Consensus size: 59
93221295 AGAATATTGA
93221305 TTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG
1 TTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG
* * * * * * * * * *
93221364 TTAATTTA-TATTTTA-TAGTATCATATATTATGATT-TGAGTAAATTCATATAAGAA-TATTG
1 TT-ATTAAGAATTTTATTA-AATTATATATTTTAATTAT-AATATATTTA-ATAATAATTA-TG
93221424 ATTATTAAGAATTTTATTAAATTATATATATTTTAATTATAATATATTTAATAATAATTATG
1 -TTATTAAGAATTTTATTAAA-T-TATATATTTTAATTATAATATATTTAATAATAATTATG
93221486 TT
1 TT
93221488 TAAATATGAT
Statistics
Matches: 92, Mismatches: 20, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
58 3 0.03
59 30 0.33
60 16 0.17
61 11 0.12
62 11 0.12
63 20 0.22
64 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.51
Consensus pattern (59 bp):
TTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG
Found at i:93221403 original size:120 final size:122
Alignment explanation
Indices: 93221256--93221487 Score: 450
Period size: 120 Copynumber: 1.9 Consensus size: 122
93221246 TTTGAGTAAA
93221256 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
93221321 TAAA-T-TATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
66 TAAATTATATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
93221376 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
93221441 TAAATTATATATATTTTAATTATAATATATTTAATAATAATTATGTT
66 TAAATTATATATATTTTAATTATAATATATTTAATAATAATTATGTT
93221488 TAAATATGAT
Statistics
Matches: 110, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
120 69 0.63
121 1 0.01
122 40 0.36
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.50
Consensus pattern (122 bp):
TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
TAAATTATATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
Found at i:93221451 original size:61 final size:61
Alignment explanation
Indices: 93221266--93221452 Score: 206
Period size: 61 Copynumber: 3.1 Consensus size: 61
93221256 TTATAGTATC
93221266 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
93221327 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
93221386 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
93221447 ATATAT
1 ATATAT
93221453 ATTTTAATTA
Statistics
Matches: 96, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 26 0.27
61 35 0.36
62 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:93221468 original size:16 final size:16
Alignment explanation
Indices: 93221443--93221490 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
93221433 AATTTTATTA
93221443 AATTAT-ATATATTTT
1 AATTATAATATATTTT
93221458 AATTATAATATA-TTT
1 AATTATAATATATTTT
*
93221473 AATAATAAT-TATGTTT
1 AATTATAATATAT-TTT
93221489 AA
1 AA
93221491 ATATGATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 2 0.07
15 17 0.59
16 10 0.34
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
AATTATAATATATTTT
Found at i:93221478 original size:18 final size:15
Alignment explanation
Indices: 93221443--93221472 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
93221433 AATTTTATTA
93221443 AATTATATATATTTT
1 AATTATATATATTTT
93221458 AATTATAATATATTT
1 AATTAT-ATATATTT
93221473 AATAATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
AATTATATATATTTT
Found at i:93221716 original size:45 final size:43
Alignment explanation
Indices: 93221616--93221725 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
93221606 TTTTCCATTA
93221616 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
93221655 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
93221700 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
93221726 CTTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:93221731 original size:16 final size:16
Alignment explanation
Indices: 93221706--93221773 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
93221696 GATTTGCTAT
*
93221706 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
* *
93221722 TACACTTCTAATCCAT
1 TACACCTCTAATCCAA
93221738 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
93221754 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
93221770 TACA
1 TACA
93221774 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:93222572 original size:29 final size:29
Alignment explanation
Indices: 93222540--93222598 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
93222530 AACGTTTTCT
93222540 CTTCACTCCACAGGTTTTAAAAACCTTAC
1 CTTCACTCCACAGGTTTTAAAAACCTTAC
93222569 CTTCACTCCACAGGTTTTAAAAACCTTAC
1 CTTCACTCCACAGGTTTTAAAAACCTTAC
93222598 C
1 C
93222599 CTTTTCTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.32, G:0.07, T:0.31
Consensus pattern (29 bp):
CTTCACTCCACAGGTTTTAAAAACCTTAC
Found at i:93224303 original size:95 final size:96
Alignment explanation
Indices: 93224078--93224319 Score: 221
Period size: 94 Copynumber: 2.6 Consensus size: 96
93224068 AATTCTTTTC
* * *
93224078 TAATTTTTTTCTCGGTTTAATAAAATTATTGACTTTTAATTGGTTATATTATGGATTGATAGCAT
1 TAATTTTTTTCTCGGTTTAATAAAAGTATTTAATTTTAATTGGTTATATTATGGATTGATAGCAT
* *
93224143 CAATACACTGACACAATTATGGGTTGACCTT
66 CAATACACTGACACAATTATGGATTAACCTT
* * ** ** *** ** *
93224174 TGATTTTTTTTTCTAATTTTTTCCTAG-AAGTAATTTT-ATTGGTTATATTATGGATTGATAGTA
1 TAATTTTTTTCTC-GGTTTAATAAAAGTATTTAATTTTAATTGGTTATATTATGGATTGATAGCA
*** *
93224237 T-AATACACTGTTGCAATTATGGATTAACTTT
65 TCAATACACTGACACAATTATGGATTAACCTT
*
93224268 TAATTTTTTTCTCGGTTTAATAGAAG----T-ATTTTAATTGGTTATATTATGGATT
1 TAATTTTTTTCTCGGTTTAATAAAAGTATTTAATTTTAATTGGTTATATTATGGATT
93224320 AACTTTTAAC
Statistics
Matches: 114, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
89 5 0.04
90 20 0.18
93 6 0.05
94 35 0.31
95 26 0.23
96 17 0.15
97 5 0.04
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.49
Consensus pattern (96 bp):
TAATTTTTTTCTCGGTTTAATAAAAGTATTTAATTTTAATTGGTTATATTATGGATTGATAGCAT
CAATACACTGACACAATTATGGATTAACCTT
Found at i:93224317 original size:58 final size:58
Alignment explanation
Indices: 93224252--93224402 Score: 257
Period size: 58 Copynumber: 2.6 Consensus size: 58
93224242 CACTGTTGCA
*
93224252 ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTAATAGAAGTATTTTAATTGGTTAT
1 ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTAATAGAAGTATTTTAATTGGTTAC
*
93224310 ATTATGGATTAACTTTTAACTTTTTTCTCGGTTTAATAGAAGTATTTTAATTGGTTAC
1 ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTAATAGAAGTATTTTAATTGGTTAC
* * *
93224368 ATTATTGATTGACTTTTAATTTTTTTCTCGATTTA
1 ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTA
93224403 GATAACATGA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 87 1.00
ACGTcount: A:0.26, C:0.07, G:0.13, T:0.54
Consensus pattern (58 bp):
ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTAATAGAAGTATTTTAATTGGTTAC
Found at i:93224726 original size:14 final size:14
Alignment explanation
Indices: 93224707--93224733 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
93224697 AACCTTTTAT
93224707 ATAATAAAATATTA
1 ATAATAAAATATTA
93224721 ATAATAAAATATT
1 ATAATAAAATATT
93224734 GAACTTTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAATAAAATATTA
Found at i:93225363 original size:25 final size:26
Alignment explanation
Indices: 93225312--93225363 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
93225302 TTATTATTAT
*
93225312 TTTTATTAAAATATATTTAACAATAA
1 TTTTATTAAAATATATATAACAATAA
*
93225338 TTTTATTAAAATTTA-ATAACAATAA
1 TTTTATTAAAATATATATAACAATAA
93225363 T
1 T
93225364 CATCCACGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (26 bp):
TTTTATTAAAATATATATAACAATAA
Found at i:93231395 original size:22 final size:21
Alignment explanation
Indices: 93231366--93231432 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 21
93231356 TGCATTAATG
93231366 AACAGAGAGCACTGAAGTGCT
1 AACAGAGAGCACTGAAGTGCT
*
93231387 ATACAGAGAGCAC-AAATGTGCT
1 A-ACAGAGAGCACTGAA-GTGCT
*
93231409 AATCAGAGAGCACTGACGTGCT
1 AA-CAGAGAGCACTGAAGTGCT
93231431 AA
1 AA
93231433 ATATCAGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 4 0.10
22 34 0.87
23 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.16
Consensus pattern (21 bp):
AACAGAGAGCACTGAAGTGCT
Found at i:93231445 original size:25 final size:24
Alignment explanation
Indices: 93231410--93231520 Score: 143
Period size: 25 Copynumber: 4.5 Consensus size: 24
93231400 AAATGTGCTA
* *
93231410 ATCAGAGAGCACTGACGTGCTAAAT
1 ATCAGAAAGCACTGGCGTGCT-AAT
93231435 ATCAGAAAGCACTGGCGTGCTAAT
1 ATCAGAAAGCACTGGCGTGCTAAT
93231459 AATCAGAAAGCACTGGCGTGCTAAT
1 -ATCAGAAAGCACTGGCGTGCTAAT
93231484 ATTCA-AAGAGCACTGGCGTGCTAAT
1 A-TCAGAA-AGCACTGGCGTGCTAAT
*
93231509 ATTCAGAGAGCA
1 A-TCAGAAAGCA
93231521 TGCTGAGGTC
Statistics
Matches: 79, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
24 6 0.08
25 72 0.91
26 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (24 bp):
ATCAGAAAGCACTGGCGTGCTAAT
Found at i:93231471 original size:50 final size:50
Alignment explanation
Indices: 93231408--93231520 Score: 167
Period size: 50 Copynumber: 2.3 Consensus size: 50
93231398 ACAAATGTGC
93231408 TAATCAGAGAGCACTGACGTGCTAA-ATATCAGAA-AGCACTGGCGTGCTAA
1 TAATCAGAGAGCACTGACGTGCTAATAT-TCA-AAGAGCACTGGCGTGCTAA
* *
93231458 TAATCAGAAAGCACTGGCGTGCTAATATTCAAAGAGCACTGGCGTGCTAA
1 TAATCAGAGAGCACTGACGTGCTAATATTCAAAGAGCACTGGCGTGCTAA
*
93231508 TATTCAGAGAGCA
1 TAATCAGAGAGCA
93231521 TGCTGAGGTC
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
49 2 0.04
50 53 0.93
51 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (50 bp):
TAATCAGAGAGCACTGACGTGCTAATATTCAAAGAGCACTGGCGTGCTAA
Found at i:93233441 original size:49 final size:49
Alignment explanation
Indices: 93233383--93233480 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
93233373 AATTTCACAG
*
93233383 GTCATACAATTCAGTCCTTGCTCAATTAGACCATCTATTAAGCTAATTT
1 GTCATACAATTCAGTCCTTGCTCAATTAGACCATCTATTAAACTAATTT
93233432 GTCATACAATTCAGTCCTTGCTCAATTAGACCATCTATTAAACTAATTT
1 GTCATACAATTCAGTCCTTGCTCAATTAGACCATCTATTAAACTAATTT
93233481 TTCTCAATTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (49 bp):
GTCATACAATTCAGTCCTTGCTCAATTAGACCATCTATTAAACTAATTT
Found at i:93239919 original size:43 final size:43
Alignment explanation
Indices: 93239872--93239961 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
93239862 ACGGGCAAGA
* ** *
93239872 GACACGGTCATGTGTCTCAGCCGTATGAAGGACACGGTCATAG
1 GACACGGGCATGTACCTCAGCCGTATGAAGGACACGATCATAG
* **
93239915 GACACGGGCGTGTACCTTGGCCGTATGAAGGACACGATCATAG
1 GACACGGGCATGTACCTCAGCCGTATGAAGGACACGATCATAG
93239958 GACA
1 GACA
93239962 TGAGCGTGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.31, T:0.19
Consensus pattern (43 bp):
GACACGGGCATGTACCTCAGCCGTATGAAGGACACGATCATAG
Found at i:93239969 original size:43 final size:43
Alignment explanation
Indices: 93239891--93239981 Score: 146
Period size: 43 Copynumber: 2.1 Consensus size: 43
93239881 ATGTGTCTCA
* *
93239891 GCCGTATGAAGGACACGGTCATAGGACACGGGCGTGTACCTTG
1 GCCGTATGAAGGACACGATCATAGGACACGAGCGTGTACCTTG
* *
93239934 GCCGTATGAAGGACACGATCATAGGACATGAGCGTGTGCCTTG
1 GCCGTATGAAGGACACGATCATAGGACACGAGCGTGTACCTTG
93239977 GCCGT
1 GCCGT
93239982 GTAGCTTCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.23, C:0.23, G:0.34, T:0.20
Consensus pattern (43 bp):
GCCGTATGAAGGACACGATCATAGGACACGAGCGTGTACCTTG
Found at i:93241040 original size:48 final size:48
Alignment explanation
Indices: 93240976--93241205 Score: 217
Period size: 48 Copynumber: 4.9 Consensus size: 48
93240966 CAGTGCAGGT
*
93240976 GATATGT-ACGCCAGTGTAAGACATGTCTGGGACATGCATCAGTCTCGA
1 GATATGTGA-GCCAGTGTAAGACATGTCTGGGACATGCATCAGACTCGA
* * * *
93241024 GATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCATC-GGC-C-A
1 GATATGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGACTCGA
* * * *
93241069 CAT-TGTGAAAGCCAGTGTAAGACATGTCTGGGACATACAT-TGACTTTGA
1 GATATGTG--AGCCAGTGTAAGACATGTCTGGGACATGCATCAGAC-TCGA
* *
93241118 G--ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCA-ACCTTGA
1 GATATGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGA-CTCGA
* * * *
93241164 GATATGTGTGCTAGTGTAATACATGTCTAGGACATGCATCAG
1 GATATGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCAG
93241206 CCACATCGTG
Statistics
Matches: 149, Mismatches: 20, Indels: 25
0.77 0.10 0.13
Matches are distributed among these distances:
44 4 0.03
45 3 0.02
46 66 0.44
47 3 0.02
48 72 0.48
49 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
GATATGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGACTCGA
Found at i:93241101 original size:46 final size:45
Alignment explanation
Indices: 93240985--93241252 Score: 186
Period size: 46 Copynumber: 5.7 Consensus size: 45
93240975 TGATATGTAC
* * *
93240985 GCCAGTGTAAGACATGTCTGGGACATGCATCAGTCTCGAGATATGTG-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGC-C-ACAT-TGTGAA
* *
93241033 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTGTGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGTG-AA
* * *
93241079 GCCAGTGTAAGACATGTCTGGGACATACAT-TG--ACTTTGAGATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT--G-TGA-A
** * *
93241125 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTTGAGATATGTG-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC---ACAT-TGTGAA
* * * * *
93241173 GCTAGTGTAATACATGTCTAGGACATGCATCAGCCACATCGTGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGTG-AA
* *
93241219 ACTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
93241253 ACTTGATATG
Statistics
Matches: 176, Mismatches: 27, Indels: 34
0.74 0.11 0.14
Matches are distributed among these distances:
43 4 0.02
44 7 0.04
45 9 0.05
46 70 0.40
47 15 0.09
48 65 0.37
50 2 0.01
51 1 0.01
52 2 0.01
53 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGTGAA
Found at i:93241295 original size:140 final size:139
Alignment explanation
Indices: 93240985--93241288 Score: 414
Period size: 140 Copynumber: 2.2 Consensus size: 139
93240975 TGATATGTAC
**
93240985 GCCAGTGTAAGACATGTCTGGGACATGCATCAGTCTCGAGATATGTGTGCTAGTGTAAGACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATGTGTGCTAGTGTAAGACATGT
* * * * * *
93241050 TTGGGACATGCATCGGCCACATTGTGAAAGCCAGTGTAAGACATGTCTGGGACATACATTGACTT
66 CTAGGACATGCATCAGCCACATCGTGAAAACCAGTGTAAGACATGTCTGGGACATACATCGACTT
93241115 TGAGATGAGA
131 TGAGAT-AGA
* *
93241125 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTTGAGATATGTGTGCTAGTGTAATACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATGTGTGCTAGTGTAAGACATGT
* *
93241190 CTAGGACATGCATCAGCCACATCGTGAAAACTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
66 CTAGGACATGCATCAGCCACATCGTGAAAACCAGTGTAAGA-CATGTCTGGGACAT-ACATCGAC
* *
93241255 -TTGATAT-GT
129 TTTGAGATAGA
* * *
93241264 GTCAGTGTAAGACCTGTCCGGGACA
1 GCCAGTGTAAGACATGTCTGGGACA
93241289 CAGCATCGAC
Statistics
Matches: 145, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
139 23 0.16
140 96 0.66
141 20 0.14
142 6 0.04
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (139 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATGTGTGCTAGTGTAAGACATGT
CTAGGACATGCATCAGCCACATCGTGAAAACCAGTGTAAGACATGTCTGGGACATACATCGACTT
TGAGATAGA
Found at i:93252148 original size:6 final size:6
Alignment explanation
Indices: 93252139--93252164 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
93252129 CCTGACTATG
93252139 ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT AC
93252165 CCTACGGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:93254468 original size:93 final size:93
Alignment explanation
Indices: 93254355--93254526 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
93254345 CGCCCATAAG
* *
93254355 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
93254420 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
93254448 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
93254513 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
93254527 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:93254523 original size:46 final size:46
Alignment explanation
Indices: 93254348--93254523 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
93254338 TGTAACCCGC
* * *
93254348 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
93254394 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
93254444 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
93254487 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
93254524 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:93271487 original size:93 final size:93
Alignment explanation
Indices: 93271374--93271545 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
93271364 CGCCCATAAG
* *
93271374 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
93271439 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
93271467 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
93271532 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
93271546 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:93271542 original size:46 final size:46
Alignment explanation
Indices: 93271367--93271542 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
93271357 TGTAACCCGC
* * *
93271367 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
93271413 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
93271463 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
93271506 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
93271543 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:93277056 original size:28 final size:28
Alignment explanation
Indices: 93276993--93277090 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
93276983 ATATTAAGTC
*
93276993 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
93277020 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
93277048 CGCACACTTCGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
93277077 CGCACACTTAGTGC
1 CGCACACTTAGTGC
93277091 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 18 0.29
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:93281736 original size:93 final size:93
Alignment explanation
Indices: 93281623--93281794 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
93281613 CGCCCATAAG
* *
93281623 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
93281688 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
93281716 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
93281781 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
93281795 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:93281791 original size:46 final size:46
Alignment explanation
Indices: 93281616--93281791 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
93281606 TGTAACCCGC
* * *
93281616 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
93281662 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
93281712 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
93281755 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
93281792 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:93289756 original size:12 final size:12
Alignment explanation
Indices: 93289739--93289764 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
93289729 GTCATTTTTG
93289739 TTTTTTATTTCT
1 TTTTTTATTTCT
93289751 TTTTTTATTTCT
1 TTTTTTATTTCT
93289763 TT
1 TT
93289765 CCCTTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTATTTCT
Found at i:93296657 original size:11 final size:11
Alignment explanation
Indices: 93296641--93296670 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
93296631 GGAAAGAAAT
93296641 ATATAATAAGA
1 ATATAATAAGA
93296652 ATATAATAAGA
1 ATATAATAAGA
*
93296663 ATCTAATA
1 ATATAATA
93296671 GCTTTACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (11 bp):
ATATAATAAGA
Found at i:93300750 original size:23 final size:22
Alignment explanation
Indices: 93300710--93300754 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
93300700 TATTAATTTT
* * *
93300710 TTTTAAAATTAGTTAATATAATA
1 TTTTAAAATAAATAAATA-AATA
93300733 TTTTAAAATAAATAAATAAATA
1 TTTTAAAATAAATAAATAAATA
93300755 AAAACTTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
TTTTAAAATAAATAAATAAATA
Found at i:93310857 original size:15 final size:16
Alignment explanation
Indices: 93310837--93310866 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93310827 GCTATGATAT
93310837 ATGAAA-TTTTTAAGA
1 ATGAAAGTTTTTAAGA
93310852 ATGAAAGTTTTTAAG
1 ATGAAAGTTTTTAAG
93310867 TTATGGTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (16 bp):
ATGAAAGTTTTTAAGA
Found at i:93313864 original size:3 final size:3
Alignment explanation
Indices: 93313856--93313890 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
93313846 ATTTATAATA
93313856 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
93313891 ACAGAACTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:93318319 original size:807 final size:807
Alignment explanation
Indices: 93316766--93318384 Score: 2986
Period size: 807 Copynumber: 2.0 Consensus size: 807
93316756 GCCAACCAGT
*
93316766 GTTCTAATCTTTGATTAAATTAGGGAAATACATTAGGGTGTGATGTAGACCTACCGACGAATTTG
1 GTTCTAATCTTCGATTAAATTAGGGAAATACATTAGGGTGTGATGTAGACCTACCGACGAATTTG
* *
93316831 GTCTTCAAATAGAGTGGTCCGCACCAAGCAAGGATATGTGTTCATTTAAGCGAAGCATTACAACA
66 GTCTTCAAACAGAGTGGTCCGCACCAAGCAAGGATATGTGTTCATTTAAGCAAAGCATTACAACA
*
93316896 GATAATGGTTCAACCCAACTCAAAAGGCTTCACACTAGCAGTCCCCTTTGCTGTAGAAGATGTTA
131 GATAATGGTTCAACCCAACTCAAAAGGCTTCACACTAGCAATCCCCTTTGCTGTAGAAGATGTTA
93316961 TAACCGCAAGGAATGTGCTTCGATATTGTTTGGAATGCTTTAACCCCGATAAGTATAGGCGAGGT
196 TAACCGCAAGGAATGTGCTTCGATATTGTTTGGAATGCTTTAACCCCGATAAGTATAGGCGAGGT
*
93317026 GACAACAGATAAGTGGCTGAAGCAGTTGGTGCAGACTTTGAAAAACAAACATGGCCCCATGTGGC
261 GACAACAGATAAGTGGCTGAAGCAGTTGGTGCAAACTTTGAAAAACAAACATGGCCCCATGTGGC
93317091 CAAAAATGATTTGAAACTAATTTCAATAATACGCAATGAGGAACCTAAGAACTTTTTTTACTATT
326 CAAAAATGATTTGAAACTAATTTCAATAATACGCAATGAGGAACCTAAGAACTTTTTTTACTATT
*
93317156 TCTACAGGATTAGACTTTGCCGTTAGATCTCGGTTGTCTCATTGCACAAAGAAAGTGGTACAAAT
391 TCTACAGGATTAGACTTCGCCGTTAGATCTCGGTTGTCTCATTGCACAAAGAAAGTGGTACAAAT
*
93317221 ATTAATTTGATAATTGCTCCTACTGGTACTAGAATTATCGGTGGTGTAGGCACAGCTCGCAATTC
456 ATTAATTTGATAATTGCTCCTACTGATACTAGAATTATCGGTGGTGTAGGCACAGCTCGCAATTC
* *
93317286 TAGAAGCGGCTCGAAGGAAACTACCATTTTATCCTAAGAAATTAAAGATGTTATTGACCTGCGAG
521 TAGAAGCGACTCGAAGGAAACTACCATTTTATCCTAAGAAATTAAAGATGTTATTGACCTACGAG
*
93317351 CTTCTCTGAGGGACATGTGTAAAAAGCACAAAACTAATGTAGAGCCTGTAAAAGTGGTTATTAGC
586 CTTCTCTGAGGGACATGCGTAAAAAGCACAAAACTAATGTAGAGCCTGTAAAAGTGGTTATTAGC
93317416 AACGAATAGGAAGCAGATAGTGGAAAGCTAGAGTATCATCATAAAAGGAGGGCAAATCATGCTGG
651 AACGAATAGGAAGCAGATAGTGGAAAGCTAGAGTATCATCATAAAAGGAGGGCAAATCATGCTGG
* * *
93317481 GCCTTCTACTGTGATAGCAGTTACTCCTACTTCTCCCTCGGTGAGCTCACCATCTATGGCTCGTA
716 GCCTTCTACTATGATAGCAGCTACTCCTACTTCTCCCCCGGTGAGCTCACCATCTATGGCTCGTA
93317546 AGAGCTCTTCGATTGCTACTCGTAGTA
781 AGAGCTCTTCGATTGCTACTCGTAGTA
* *
93317573 GTTCTAATCTTCGATTAAATTGGGGAAATACATTAGGGTGTGATGTAGACCTGCCGACGAATTTG
1 GTTCTAATCTTCGATTAAATTAGGGAAATACATTAGGGTGTGATGTAGACCTACCGACGAATTTG
* *
93317638 GTCTTCAAACAGAGTGGTCCGCACCAAGCAGGGATATGTGTTCATTTAAGCAAAGTATTACAACA
66 GTCTTCAAACAGAGTGGTCCGCACCAAGCAAGGATATGTGTTCATTTAAGCAAAGCATTACAACA
** *
93317703 GATAATGGTTCAACCCAACTCGTAAGGCTTCACACTAGCAATCCCCTTTGTTGTAGAAGATGTTA
131 GATAATGGTTCAACCCAACTCAAAAGGCTTCACACTAGCAATCCCCTTTGCTGTAGAAGATGTTA
*
93317768 TAACCGCAAGGAATGTGCTTCGATATTGTTTGGAATGCTTTAACCCCGATGAGTATAGGCGAGGT
196 TAACCGCAAGGAATGTGCTTCGATATTGTTTGGAATGCTTTAACCCCGATAAGTATAGGCGAGGT
93317833 GACAACAGATAAGTGGCTGAAGCAGTTGGTGCAAACTTTGAAAAACAAACATGGCCCCATGTGGC
261 GACAACAGATAAGTGGCTGAAGCAGTTGGTGCAAACTTTGAAAAACAAACATGGCCCCATGTGGC
* *
93317898 CAAAAATGATTTGAGACTAATTTCAATAATACGCAATGAGGAACCTAAGAACTTTTTTTACTGTT
326 CAAAAATGATTTGAAACTAATTTCAATAATACGCAATGAGGAACCTAAGAACTTTTTTTACTATT
93317963 TCTACAGGATTAGACTTCGCCGTTAGATCTCGGTTGTCTCATTGCACAAAGAAAGTGGTACAAAT
391 TCTACAGGATTAGACTTCGCCGTTAGATCTCGGTTGTCTCATTGCACAAAGAAAGTGGTACAAAT
93318028 ATTAATTTGATAATTGCTCCTACTGATACTAGAATTATCGGTGGTGTAGGCACAGCTCGCAATTC
456 ATTAATTTGATAATTGCTCCTACTGATACTAGAATTATCGGTGGTGTAGGCACAGCTCGCAATTC
93318093 TAGAAGCGACTCGAAGGAAACTACCATTTTATCCTAAGAAATTAAAGATGTTATTGACCTACGAG
521 TAGAAGCGACTCGAAGGAAACTACCATTTTATCCTAAGAAATTAAAGATGTTATTGACCTACGAG
*
93318158 CTTCTCTGAGGGACATGCGTAAGAAGCACAAAACTAATGTAGAGCCTGTAAAAGTGGTTATTAGC
586 CTTCTCTGAGGGACATGCGTAAAAAGCACAAAACTAATGTAGAGCCTGTAAAAGTGGTTATTAGC
* * *
93318223 AGCGAATAGGAGGCAGATAGTGGAAAGCTAGAGTATCATTATAAAAGGAGGGCAAATCATGCTGG
651 AACGAATAGGAAGCAGATAGTGGAAAGCTAGAGTATCATCATAAAAGGAGGGCAAATCATGCTGG
*
93318288 GCCTTCTATTATGATAGCAGCTACTCCTACTTCTCCCCCGGTGAGCTCACCATCTATGGCTCGTA
716 GCCTTCTACTATGATAGCAGCTACTCCTACTTCTCCCCCGGTGAGCTCACCATCTATGGCTCGTA
93318353 AGAGCTCTTCGATTGCTACTCGTAGTA
781 AGAGCTCTTCGATTGCTACTCGTAGTA
93318380 GTTCT
1 GTTCT
93318385 CCTCTTCATA
Statistics
Matches: 784, Mismatches: 28, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
807 784 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (807 bp):
GTTCTAATCTTCGATTAAATTAGGGAAATACATTAGGGTGTGATGTAGACCTACCGACGAATTTG
GTCTTCAAACAGAGTGGTCCGCACCAAGCAAGGATATGTGTTCATTTAAGCAAAGCATTACAACA
GATAATGGTTCAACCCAACTCAAAAGGCTTCACACTAGCAATCCCCTTTGCTGTAGAAGATGTTA
TAACCGCAAGGAATGTGCTTCGATATTGTTTGGAATGCTTTAACCCCGATAAGTATAGGCGAGGT
GACAACAGATAAGTGGCTGAAGCAGTTGGTGCAAACTTTGAAAAACAAACATGGCCCCATGTGGC
CAAAAATGATTTGAAACTAATTTCAATAATACGCAATGAGGAACCTAAGAACTTTTTTTACTATT
TCTACAGGATTAGACTTCGCCGTTAGATCTCGGTTGTCTCATTGCACAAAGAAAGTGGTACAAAT
ATTAATTTGATAATTGCTCCTACTGATACTAGAATTATCGGTGGTGTAGGCACAGCTCGCAATTC
TAGAAGCGACTCGAAGGAAACTACCATTTTATCCTAAGAAATTAAAGATGTTATTGACCTACGAG
CTTCTCTGAGGGACATGCGTAAAAAGCACAAAACTAATGTAGAGCCTGTAAAAGTGGTTATTAGC
AACGAATAGGAAGCAGATAGTGGAAAGCTAGAGTATCATCATAAAAGGAGGGCAAATCATGCTGG
GCCTTCTACTATGATAGCAGCTACTCCTACTTCTCCCCCGGTGAGCTCACCATCTATGGCTCGTA
AGAGCTCTTCGATTGCTACTCGTAGTA
Found at i:93319576 original size:11 final size:12
Alignment explanation
Indices: 93319549--93319573 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93319539 AAAATTGAAC
93319549 TTAAACAAATTT
1 TTAAACAAATTT
93319561 TTAAACAAATTT
1 TTAAACAAATTT
93319573 T
1 T
93319574 AAAAAGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TTAAACAAATTT
Found at i:93319961 original size:157 final size:157
Alignment explanation
Indices: 93319675--93319980 Score: 441
Period size: 157 Copynumber: 1.9 Consensus size: 157
93319665 AAACATTCTA
* * *
93319675 AGTTGTGAATTTTAATTAGCAAACTCAAAGGAACTTAAGCTACGATCTCAAATCAATTAAGCCTT
1 AGTTGTGAATGTTAATCAGCAAAATCAAAGGAACTTAAGCTACGATCTCAAATCAATTAAGCCTT
* * * **
93319740 AAATACCACCCAGGAGGGTAGCCTTGCTAGCTTTGTTGGATCTATGAGCTTAATTATATAAGCAC
66 AAATACCACCCAGGAGGGTAACCTTGCTAGCTGTGTTGAATCTACAAGCTTAATTATATAAGCAC
*
93319805 TTATAATGCCAGCTGAGAGTGTAGGTG
131 TTATAATGCCAGATGAGAGTGTAGGTG
* ** * *
93319832 AGTTGTGAATGTTAATCAGCAAAATCAAAGGAATTTAATTTGCGATCTTAAATCAATTAAGCCTT
1 AGTTGTGAATGTTAATCAGCAAAATCAAAGGAACTTAAGCTACGATCTCAAATCAATTAAGCCTT
* * * *
93319897 AAATACCACCCAGGAGGGTAACCTTGCTAGCTGTGTTGAATCTGCAAGCTTAATTTTGTGAGCAC
66 AAATACCACCCAGGAGGGTAACCTTGCTAGCTGTGTTGAATCTACAAGCTTAATTATATAAGCAC
*
93319962 TTATAATGTCAGATGAGAG
131 TTATAATGCCAGATGAGAG
93319981 CATAGGTCTG
Statistics
Matches: 130, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
157 130 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (157 bp):
AGTTGTGAATGTTAATCAGCAAAATCAAAGGAACTTAAGCTACGATCTCAAATCAATTAAGCCTT
AAATACCACCCAGGAGGGTAACCTTGCTAGCTGTGTTGAATCTACAAGCTTAATTATATAAGCAC
TTATAATGCCAGATGAGAGTGTAGGTG
Found at i:93321589 original size:54 final size:54
Alignment explanation
Indices: 93321502--93321609 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
93321492 GAAAAAGCGT
* * * *
93321502 CTGCACATGTGTTGTCACTTCTGGTGAGCTACTTTATCTGAACTTTGTTAAATC
1 CTGCACATGTGTTGTCACTCCTAGCGAGATACTTTATCTGAACTTTGTTAAATC
93321556 CTGCACATGTGTTGTCACTCCTAGCGAGATACTTTATCTGAACTTTGTTAAATC
1 CTGCACATGTGTTGTCACTCCTAGCGAGATACTTTATCTGAACTTTGTTAAATC
93321610 TTACAAGCAG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (54 bp):
CTGCACATGTGTTGTCACTCCTAGCGAGATACTTTATCTGAACTTTGTTAAATC
Found at i:93322925 original size:19 final size:20
Alignment explanation
Indices: 93322876--93322917 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
93322866 ATGTTGTGTA
93322876 TCCTAAAAAATGCGAACACC
1 TCCTAAAAAATGCGAACACC
93322896 TCCTAAAAAATGCGAACACC
1 TCCTAAAAAATGCGAACACC
93322916 TC
1 TC
93322918 TAACAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.31, G:0.10, T:0.17
Consensus pattern (20 bp):
TCCTAAAAAATGCGAACACC
Found at i:93331000 original size:17 final size:17
Alignment explanation
Indices: 93330978--93331011 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93330968 ATCCACTAAT
*
93330978 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
93330995 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
93331012 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:93335640 original size:17 final size:17
Alignment explanation
Indices: 93335618--93335651 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93335608 ATCCACTAAT
*
93335618 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
93335635 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
93335652 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:93338016 original size:4 final size:4
Alignment explanation
Indices: 93338007--93338032 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
93337997 TAGATTACAT
93338007 ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT
93338033 GAAGAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:93344969 original size:16 final size:17
Alignment explanation
Indices: 93344938--93344972 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
93344928 ATAATGATAA
*
93344938 TTTATCTAAGTAATTAT
1 TTTATCTAACTAATTAT
93344955 TTTATCTAACT-ATTAT
1 TTTATCTAACTAATTAT
93344971 TT
1 TT
93344973 CTCTCCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.57
Consensus pattern (17 bp):
TTTATCTAACTAATTAT
Found at i:93348708 original size:54 final size:52
Alignment explanation
Indices: 93348595--93348715 Score: 181
Period size: 52 Copynumber: 2.3 Consensus size: 52
93348585 TACATGGGAG
*
93348595 CACTTATCACTT-TTCGCCGATGCCATAGCACAACTATGGTCTTATACGAAT
1 CACTTATCACTTGTTTGCCGATGCCATAGCACAACTATGGTCTTATACGAAT
* * *
93348646 CACTTATCACTTGTTTTCCGATGCCATAGCCCAGCTATGGTCTTATACGGATAT
1 CACTTATCACTTGTTTGCCGATGCCATAGCACAACTATGGTCTTATAC-GA-AT
93348700 CACTTATCACTTGTTT
1 CACTTATCACTTGTTT
93348716 CCATGGTCCA
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
51 12 0.19
52 31 0.49
53 2 0.03
54 18 0.29
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (52 bp):
CACTTATCACTTGTTTGCCGATGCCATAGCACAACTATGGTCTTATACGAAT
Found at i:93351187 original size:25 final size:25
Alignment explanation
Indices: 93351159--93351219 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
93351149 GCAATACAAG
**
93351159 GGGAAGCTCATGTGAGCCGTATAAC
1 GGGAAGCTCATCCGAGCCGTATAAC
* *
93351184 GGGAAGCTTATCCGAGCTGTATAAC
1 GGGAAGCTCATCCGAGCCGTATAAC
*
93351209 GGGAAACTCAT
1 GGGAAGCTCAT
93351220 AAGAGCCATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.21
Consensus pattern (25 bp):
GGGAAGCTCATCCGAGCCGTATAAC
Found at i:93351225 original size:25 final size:25
Alignment explanation
Indices: 93351172--93351226 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
93351162 AAGCTCATGT
* * **
93351172 GAGCCGTATAACGGGAAGCTTATCC
1 GAGCCGTATAACGGGAAACTCATAA
*
93351197 GAGCTGTATAACGGGAAACTCATAA
1 GAGCCGTATAACGGGAAACTCATAA
93351222 GAGCC
1 GAGCC
93351227 ATATTCCAGA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (25 bp):
GAGCCGTATAACGGGAAACTCATAA
Found at i:93354051 original size:41 final size:41
Alignment explanation
Indices: 93353992--93354072 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
93353982 GGTAAAAAGT
* *
93353992 GCTTCCAGCTGGTAGCGTTTTTCTGTCAATATGCTAAAAAC
1 GCTTCCAACTGGTAGCGTTTTTCTGTCAATATGCAAAAAAC
93354033 GCTTCCAACTGG-ACGCGTTTTTCTGTCAATATGCAAAAAA
1 GCTTCCAACTGGTA-GCGTTTTTCTGTCAATATGCAAAAAA
93354073 TGCCATGTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 1 0.03
41 36 0.97
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (41 bp):
GCTTCCAACTGGTAGCGTTTTTCTGTCAATATGCAAAAAAC
Done.