Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 294 of 333
Found at i:97066469 original size:22 final size:22
Alignment explanation
Indices: 97066399--97066528 Score: 85
Period size: 22 Copynumber: 6.0 Consensus size: 22
97066389 TTTTCAAGTA
97066399 TATT-TATATATTATATTAT-T
1 TATTATATATATTATATTATAT
*
97066419 TATTAATATATATTATTTTATAT
1 TATT-ATATATATTATATTATAT
*
97066442 TTTTATAT-TATTATA-TATAT
1 TATTATATATATTATATTATAT
* * * *
97066462 TA-TAT-TATCTTATGTTTTAA
1 TATTATATATATTATATTATAT
* *
97066482 TATACATTATATATTATATTATGT
1 TAT-TA-TATATATTATATTATAT
* *
97066506 TATTTTATATTTTATCA-TATAT
1 TATTATATATATTAT-ATTATAT
97066528 T
1 T
97066529 TATATCTTAT
Statistics
Matches: 82, Mismatches: 18, Indels: 18
0.69 0.15 0.15
Matches are distributed among these distances:
18 1 0.01
19 8 0.10
20 15 0.18
21 6 0.07
22 33 0.40
23 6 0.07
24 13 0.16
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
TATTATATATATTATATTATAT
Found at i:97066683 original size:17 final size:17
Alignment explanation
Indices: 97066658--97066707 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
97066648 TATTCTTTTA
* *
97066658 TATTTTATATGTTATTT
1 TATTATATATATTATTT
*
97066675 TATTATATATATTTATAT
1 TATTATATATA-TTATTT
97066693 TATTA-ATATATTATT
1 TATTATATATATTATT
97066708 ACACTATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 4 0.14
17 14 0.50
18 10 0.36
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TATTATATATATTATTT
Found at i:97066685 original size:19 final size:17
Alignment explanation
Indices: 97066663--97066704 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
97066653 TTTTATATTT
*
97066663 TATATGTTATTTTATTATA
1 TATAT-TTATATTATTA-A
97066682 TATATTTATATTATTAA
1 TATATTTATATTATTAA
97066699 TATATT
1 TATATT
97066705 ATTACACTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.32
18 10 0.45
19 5 0.23
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (17 bp):
TATATTTATATTATTAA
Found at i:97078864 original size:44 final size:44
Alignment explanation
Indices: 97078816--97079288 Score: 680
Period size: 44 Copynumber: 10.8 Consensus size: 44
97078806 TGTTTACAAT
*
97078816 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * *
97078860 GAGCAGATCGAAGATAGTAGATTTGGCATCTCTGCATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * *
97078904 GAGCAGATCGAAGAT-GATAGATTTGGCGTCTTTGTATTGTTAGA
1 GAGCAGATCGAAGATAG-CAGATTTGGCGTCTCTGTATTGTCAGA
* *
97078948 GAGCAGATCAAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
97078992 GAGCAGATCGAAGAT-GACAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAG-CAGATTTGGCGTCTCTGTATTGTCAGA
* * *
97079036 AAGCAGATCGAAGATAGCAGATTTGGCGTTTCTGTATTATCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
97079080 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * * * *
97079124 GAGCAGATTGAAGATAACGGATTTGGCATCTCTGTATTGACAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * **
97079168 GAGTAGATCGAAGATAACAGATTTACCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * *
97079212 GAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTATTGTCAAA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
97079256 AAGCAGATCGAAGATAGCATATTTGGCGTCTCT
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCT
97079289 CAAGGACATC
Statistics
Matches: 383, Mismatches: 42, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
43 2 0.01
44 379 0.99
45 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
Found at i:97080814 original size:5 final size:5
Alignment explanation
Indices: 97080796--97080932 Score: 80
Period size: 5 Copynumber: 29.0 Consensus size: 5
97080786 TATTTTCAAG
* *
97080796 TATAT T-TA- TATAT TATAT TAT-T TAT-T AATA- TATAT TATTT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* * * * *
97080841 T-T-T TATAT TATTAT ATATAT TATAT TATCT TATGT TTTAA TATA- CAT-T
1 TATAT TATAT TA-TAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* * *
97080889 ATATAT TATAT TATAT TATTT TATAT TTTAT CATA- TAT-T TATAT
1 -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
97080933 CTTATTACAT
Statistics
Matches: 101, Mismatches: 18, Indels: 26
0.70 0.12 0.18
Matches are distributed among these distances:
3 3 0.03
4 23 0.23
5 66 0.65
6 7 0.07
7 2 0.02
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:97080839 original size:10 final size:10
Alignment explanation
Indices: 97080761--97080915 Score: 81
Period size: 10 Copynumber: 14.8 Consensus size: 10
97080751 CATATAAAAA
97080761 TTTAT-TTAT
1 TTTATATTAT
97080770 TTGTATATTAT
1 TT-TATATTAT
97080781 TTT-T-TTAT
1 TTTATATTAT
97080789 TTTCA-AGTATAT
1 TTT-ATA-T-TAT
97080801 TTATATATTAT
1 TT-TATATTAT
*
97080812 ATTAT-TTAT
1 TTTATATTAT
97080821 TAATATATATTAT
1 T--T-TATATTAT
97080834 TTTATA-T-T
1 TTTATATTAT
97080842 TTTATATTAT
1 TTTATATTAT
97080852 TATATATATTAT
1 T-T-TATATTAT
* *
97080864 ATTATCTTATGT
1 TTTATATTA--T
*
97080876 TTTAATATACAT
1 TTT-ATAT-TAT
*
97080888 TATATATTAT
1 TTTATATTAT
*
97080898 ATTATATTAT
1 TTTATATTAT
97080908 TTTATATT
1 TTTATATT
97080916 TTATCATATA
Statistics
Matches: 113, Mismatches: 12, Indels: 41
0.68 0.07 0.25
Matches are distributed among these distances:
8 14 0.12
9 9 0.08
10 36 0.32
11 19 0.17
12 24 0.21
13 10 0.09
14 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (10 bp):
TTTATATTAT
Found at i:97080868 original size:22 final size:22
Alignment explanation
Indices: 97080798--97080927 Score: 94
Period size: 22 Copynumber: 6.0 Consensus size: 22
97080788 TTTTCAAGTA
97080798 TATT-TATATATTATATTAT-T
1 TATTATATATATTATATTATAT
*
97080818 TATTAATATATATTATTTTATAT
1 TATT-ATATATATTATATTATAT
*
97080841 TTTTATAT-TATTATA-TATAT
1 TATTATATATATTATATTATAT
* * * *
97080861 TA-TAT-TATCTTATGTTTTAA
1 TATTATATATATTATATTATAT
*
97080881 TATACATTATATATTATATTATAT
1 TAT-TA-TATATATTATATTATAT
* *
97080905 TATTTTATATTTTATCA-TATAT
1 TATTATATATATTAT-ATTATAT
97080927 T
1 T
97080928 TATATCTTAT
Statistics
Matches: 84, Mismatches: 16, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
18 1 0.01
19 8 0.10
20 15 0.18
21 6 0.07
22 34 0.40
23 6 0.07
24 14 0.17
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (22 bp):
TATTATATATATTATATTATAT
Found at i:97081085 original size:19 final size:19
Alignment explanation
Indices: 97081070--97081108 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
97081060 TTTTATATGT
97081070 TATTT-TATTATATATATA
1 TATTTATATTATATATATA
97081088 TATTTATATTAT-TA-ATA
1 TATTTATATTATATATATA
97081105 TATT
1 TATT
97081109 ATTACACTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 7 0.35
19 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTTATATTATATATATA
Found at i:97090760 original size:27 final size:27
Alignment explanation
Indices: 97090730--97090897 Score: 81
Period size: 27 Copynumber: 6.3 Consensus size: 27
97090720 CGACTTGTAA
97090730 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAG
****
97090757 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
**** ** *
97090784 AATTACCGTTTTACCCTCGATTTTTAA
1 AATTACCAAAGTACCCTCGATTTACAG
*** *
97090811 AATTACCATTTTACCCTCGATTTACAT
1 AATTACCAAAGTACCCTCGATTTACAG
****
97090838 AATTACCGTTTTA-CCTCCG-TTTACAG
1 AATTACCAAAGTACCCT-CGATTTACAG
*****
97090864 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
97090891 AATTACC
1 AATTACC
97090898 GTTTTACCCT
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.20
27 97 0.80
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.38
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:97090901 original size:27 final size:27
Alignment explanation
Indices: 97090747--97091264 Score: 596
Period size: 27 Copynumber: 18.9 Consensus size: 27
97090737 AAAGTACTCC
97090747 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
97090774 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
97090801 CGATTTTTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
97090828 CGATTTACATAATTACCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
97090854 CCG-TTTACAGAATTACTGTTTTACCCT
1 -CGATTTACAGAATTACCGTTTTACCCT
97090881 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
97090908 CGATTTGTAAATTTTTAAAATTACCGTTTTACCCT
1 CGA-TT-T--A----CAGAATTACCGTTTTACCCT
*
97090943 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
97090970 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
97090997 CGATTTACAGAATCACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
97091024 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
97091051 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
97091078 TGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
97091105 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
97091132 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
97091159 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * * *
97091186 TGATTTATAGAATTACTGGTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
97091213 C-AGTTTACAAAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
97091240 TGATTTACAGAATTACCGTTTTACC
1 CGATTTACAGAATTACCGTTTTACC
97091265 ATTGATTGTG
Statistics
Matches: 416, Mismatches: 58, Indels: 34
0.82 0.11 0.07
Matches are distributed among these distances:
26 26 0.06
27 358 0.86
28 5 0.01
29 1 0.00
31 2 0.00
33 1 0.00
34 2 0.00
35 21 0.05
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:97090967 original size:89 final size:88
Alignment explanation
Indices: 97090838--97091002 Score: 244
Period size: 89 Copynumber: 1.9 Consensus size: 88
97090828 CGATTTACAT
** *
97090838 AATTACCGTTTTACCTCCGTTTACAGAATTACTGTTTTACCCTC-GATTTACAGAATTACCGTTT
1 AATTACCGTTTTACCTCCGTTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACCATTT
97090902 TACCCTCGATTTGTAAATTTTTAA
65 TACCCTCGATTTGTAAATTTTTAA
* *
97090926 AATTACCGTTTTACC-CTCGATTTACAGAATTACCATTTTACCCTCAGTTTATAGAATTACTATT
1 AATTACCGTTTTACCTC-CG-TTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACCATT
97090990 TTACCCTCGATTT
64 TTACCCTCGATTT
97091003 ACAGAATCAC
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
87 1 0.01
88 17 0.25
89 50 0.72
90 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (88 bp):
AATTACCGTTTTACCTCCGTTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTT
ACCCTCGATTTGTAAATTTTTAA
Found at i:97091311 original size:27 final size:27
Alignment explanation
Indices: 97091276--97091443 Score: 194
Period size: 27 Copynumber: 6.2 Consensus size: 27
97091266 TTGATTGTGA
* *
97091276 AATTACTGAAATACCCCTGTTGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
*
97091303 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * *
97091330 AATCACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTATAGGGTAG
** *
97091357 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * *
97091384 AATTA-TCAAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTATAGGGTAG
* *
97091411 AAATACTGAAAAACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
97091438 AATTAC
1 AATTAC
97091444 CGAGATACGC
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
27 117 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAGGGTAG
Found at i:97091344 original size:54 final size:54
Alignment explanation
Indices: 97091280--97091470 Score: 204
Period size: 54 Copynumber: 3.5 Consensus size: 54
97091270 TTGTGAAATT
* * *
97091280 ACTGAAATACCCCTGTTGGGTAGAATTTCTGAAATACCCCTATAGGGTAGAATC
1 ACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATC
* * ** * *
97091334 ACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAGAATT
1 ACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATC
* * * *
97091388 A-TCAAAATACCCTTGTAGGGTAGAAATACTGAAAAACCCCTATAGGGTAGAATT
1 ACT-GAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATC
* * * * *
97091442 ACCGAGATACGCTTGTGGGGTAAAATTAC
1 ACTGAAATACCCTTGTAGGGTAGAATTAC
97091471 CATTTTGCCC
Statistics
Matches: 111, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
53 1 0.01
54 110 0.99
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
ACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATC
Found at i:97091463 original size:81 final size:82
Alignment explanation
Indices: 97091284--97091444 Score: 229
Period size: 81 Copynumber: 2.0 Consensus size: 82
97091274 GAAATTACTG
* * * *
97091284 AAATACCCCTGTTGGGTAGAATT-TCTGAAATACCCCTATAGGGTAGAATCACTGAAATACCCTT
1 AAATACCCCTGTAGGGTAGAATTATCTAAAATACCCCTATAGGGTAGAATCACTGAAAAACCCCT
97091348 ATAGGATAGAATTACCA
66 ATAGGATAGAATTACCA
* *
97091365 AAATACCCCTGTAGGGTAGAATTATC-AAAATACCCTTGTAGGGTAGAAAT-ACTGAAAAACCCC
1 AAATACCCCTGTAGGGTAGAATTATCTAAAATACCCCTATAGGGTAG-AATCACTGAAAAACCCC
*
97091428 TATAGGGTAGAATTACC
65 TATAGGATAGAATTACC
97091445 GAGATACGCT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
81 66 0.93
82 5 0.07
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.25
Consensus pattern (82 bp):
AAATACCCCTGTAGGGTAGAATTATCTAAAATACCCCTATAGGGTAGAATCACTGAAAAACCCCT
ATAGGATAGAATTACCA
Found at i:97091469 original size:81 final size:81
Alignment explanation
Indices: 97091284--97091469 Score: 214
Period size: 81 Copynumber: 2.3 Consensus size: 81
97091274 GAAATTACTG
* * * * *
97091284 AAATACCCCTGTTGGGTAGAATT-TCTGAAATACCCCTATAGGGTAGAATCACTGAAATACCCTT
1 AAATACCCCTGTAGGGTAAAATTATC-AAAATACCCCTATAGGGTAGAATCACTGAAAAACCCCT
97091348 ATAGGATAGAATTACCA
65 ATAGGATAGAATTACCA
* * *
97091365 AAATACCCCTGTAGGGTAGAATTATCAAAATACCCTTGTAGGGTAGAAAT-ACTGAAAAACCCCT
1 AAATACCCCTGTAGGGTAAAATTATCAAAATACCCCTATAGGGTAG-AATCACTGAAAAACCCCT
* *
97091429 ATAGGGTAGAATTACCG
65 ATAGGATAGAATTACCA
* * * *
97091446 AGATACGCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAAAATTA
97091470 CCATTTTGCC
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 85 0.94
82 5 0.06
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.26
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAAAATTATCAAAATACCCCTATAGGGTAGAATCACTGAAAAACCCCTA
TAGGATAGAATTACCA
Found at i:97091708 original size:27 final size:26
Alignment explanation
Indices: 97091670--97091752 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
97091660 CGGAGGAAGC
*
97091670 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
97091697 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
97091723 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
97091750 GTT
1 GTT
97091753 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:97092085 original size:27 final size:27
Alignment explanation
Indices: 97092063--97092136 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
97092053 TAGGTGGGTT
*
97092063 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAGTATCTGTA-TCTGGTGGCTC
*
97092090 TGCCACAGTATCTGTATCTGGTGACTC
1 TGCCACAGTATCTGTATCTGGTGGCTC
*
97092117 TGTCAC-GATATCTGT-TCTGG
1 TGCCACAG-TATCTGTATCTGG
97092137 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TGCCACAGTATCTGTATCTGGTGGCTC
Found at i:97092263 original size:6 final size:6
Alignment explanation
Indices: 97092254--97092434 Score: 194
Period size: 6 Copynumber: 29.8 Consensus size: 6
97092244 TTGCATTCAC
* *
97092254 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
*
97092303 ATTCTG ATTCTG -TTACTG ATTCTG ATTTTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
97092351 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
97092400 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
97092435 CATTTTGGTT
Statistics
Matches: 149, Mismatches: 12, Indels: 28
0.79 0.06 0.15
Matches are distributed among these distances:
5 9 0.06
6 128 0.86
7 9 0.06
8 3 0.02
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:97092401 original size:79 final size:79
Alignment explanation
Indices: 97092280--97092429 Score: 218
Period size: 79 Copynumber: 1.9 Consensus size: 79
97092270 TGTCACGTAA
* *
97092280 TTCTGATTCTGATTCTGATTCTGATTCTGATTCTGTTACTGATTCTGATTTTGATTCTGATTCTG
1 TTCTGATTCTGATTCTGATTCTGATTCTAATTCTGTTACTGATTCTGATTCTGATTCTGATTCTG
97092345 ATTCTGTCACCTAA
66 ATTCTGTCACCTAA
97092359 TTCTGATTCTGATTCTGATTCTG-TTACTAATAT-TGATT-CTGATTCTGATTCTG-TTACTGAT
1 TTCTGATTCTGATTCTGATTCTGATT-CTAAT-TCTG-TTACTGATTCTGATTCTGATT-CTGAT
97092420 TCTGATTCTG
62 TCTGATTCTG
97092430 ATTCTCATTT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
78 4 0.06
79 58 0.89
80 3 0.05
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (79 bp):
TTCTGATTCTGATTCTGATTCTGATTCTAATTCTGTTACTGATTCTGATTCTGATTCTGATTCTG
ATTCTGTCACCTAA
Found at i:97092452 original size:30 final size:30
Alignment explanation
Indices: 97092279--97092455 Score: 166
Period size: 30 Copynumber: 5.9 Consensus size: 30
97092269 CTGTCACGTA
**
97092279 ATTCTGATTCTGATT-CTGATTCTGATTCTG
1 ATTCTGATTCTG-TTACCAATTCTGATTCTG
** *
97092309 ATTCTG-TTACTGATT-CTGATTTTGATTCTG
1 ATTCTGATT-CTG-TTACCAATTCTGATTCTG
*
97092339 ATTCTGATTCTGTCACCTAATTCTGATTCTG
1 ATTCTGATTCTGTTACC-AATTCTGATTCTG
*
97092370 ATTCTGATTCTGTTACTAATAT-TGATTCTG
1 ATTCTGATTCTGTTACCAAT-TCTGATTCTG
**
97092400 ATTCTGATTCTGTTACTGATTCTGATTCTG
1 ATTCTGATTCTGTTACCAATTCTGATTCTG
* *
97092430 ATTCTCATTTTGGTT-CCAATTCTGAT
1 ATTCTGATTCT-GTTACCAATTCTGAT
97092456 AATGTTTCTT
Statistics
Matches: 128, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
29 4 0.03
30 92 0.72
31 32 0.25
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGTTACCAATTCTGATTCTG
Found at i:97109826 original size:39 final size:39
Alignment explanation
Indices: 97109783--97109925 Score: 187
Period size: 39 Copynumber: 3.7 Consensus size: 39
97109773 CATATTCACT
* *
97109783 TTTAAGCATATATCACATTACACATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * * *
97109822 TTTAAGCATATATCAGAATACTTATATAGTCACATGACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* *
97109861 TCTAAGCATATATCACAATACTCATATAATCACATTACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
97109900 TTCAAGCATATATCATAATACGCATA
1 TTTAAGCATATATCACAATACTCATA
97109926 ACATGTTTAT
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:97121038 original size:23 final size:23
Alignment explanation
Indices: 97121011--97121057 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
97121001 ATTACCGATA
97121011 AATACACATCATTTAT-CATATAT
1 AATACACA-CATTTATACATATAT
* *
97121034 AATACATACATTTATACATTTAT
1 AATACACACATTTATACATATAT
97121057 A
1 A
97121058 CTCAAATACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (23 bp):
AATACACACATTTATACATATAT
Found at i:97122582 original size:48 final size:47
Alignment explanation
Indices: 97122463--97122591 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 47
97122453 AATCAATAAG
* * *
97122463 TACCTATACCATGGCCCGTAGCCAAACCAAGGTAACTTATCTCGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTCGAAA
* *
97122510 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAA-TTCCTCCTTGAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTT-AT-CTCGAAA
* * *
97122558 TACCTATACCTTGGCCCGTTGCCAAATCACGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
97122592 TCGACCGCAC
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
46 2 0.03
47 35 0.49
48 35 0.49
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTCGAAA
Found at i:97128346 original size:43 final size:43
Alignment explanation
Indices: 97128237--97128349 Score: 147
Period size: 43 Copynumber: 2.6 Consensus size: 43
97128227 TGCCATATCA
* *
97128237 CAGATATGGTCTTACATGTTATCACATATCGATACCAATGTCC
1 CAGACATGGTCTTACATGTAATCACATATCGATACCAATGTCC
* * * * *
97128280 CAAACATGGTCTTACACGAAATCATATAAT-GATGCCAATGTCC
1 CAGACATGGTCTTACATGTAATCACAT-ATCGATACCAATGTCC
97128323 CAGACATGGTCTTACATGTAATCACAT
1 CAGACATGGTCTTACATGTAATCACAT
97128350 CTCGGTAATC
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 56 0.97
44 2 0.03
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (43 bp):
CAGACATGGTCTTACATGTAATCACATATCGATACCAATGTCC
Found at i:97151370 original size:31 final size:31
Alignment explanation
Indices: 97151335--97151396 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
97151325 TTAGTATAAA
97151335 GAGAAAGAAAGATGAAGAAAATTCTTCATAC
1 GAGAAAGAAAGATGAAGAAAATTCTTCATAC
97151366 GAGAAAGAAAGATGAAGAAAATTCTTCATAC
1 GAGAAAGAAAGATGAAGAAAATTCTTCATAC
97151397 TTTTACCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.10, G:0.19, T:0.19
Consensus pattern (31 bp):
GAGAAAGAAAGATGAAGAAAATTCTTCATAC
Found at i:97154665 original size:3 final size:3
Alignment explanation
Indices: 97154651--97154686 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
97154641 TCATTTAATT
* *
97154651 TTA TTC TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
97154687 AAAACTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:97159532 original size:27 final size:28
Alignment explanation
Indices: 97159423--97159545 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
97159413 GAGATTGGCG
* * * *
97159423 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
97159452 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
97159480 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
97159508 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
97159535 CTGAGTGTGCG
1 CTAAGTGTGCG
97159546 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:97159535 original size:55 final size:57
Alignment explanation
Indices: 97159423--97159545 Score: 169
Period size: 55 Copynumber: 2.2 Consensus size: 57
97159413 GAGATTGGCG
* * * *
97159423 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
* *
97159480 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
*
97159535 CTGAGTGTGCG
1 CTAAGTGTGCG
97159546 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.39
56 21 0.36
57 15 0.25
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
Found at i:97159556 original size:27 final size:27
Alignment explanation
Indices: 97159448--97159558 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
97159438 TAAATTGTAC
** * *
97159448 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
97159476 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
97159504 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
97159531 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
97159558 A
1 A
97159559 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:97167824 original size:56 final size:56
Alignment explanation
Indices: 97167733--97167855 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
97167723 GAGATTGGCG
* * *
97167733 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCAAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAG-TTGATTATATAGCA
* *
97167790 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTGATTATATAGCA
*
97167845 CTGAGTGTGCG
1 CTAAGTGTGCG
97167856 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTGATTATATAGCA
Found at i:97167842 original size:27 final size:28
Alignment explanation
Indices: 97167758--97167854 Score: 160
Period size: 28 Copynumber: 3.5 Consensus size: 28
97167748 TAAATTGTAC
*
97167758 AGCACTAAGTGTGCAAGTTTGATTATGT
1 AGCACTAAGTGTGCAAGTTTGATTATAT
*
97167786 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCAAGTTTGATTATAT
97167814 AGCACTAAGTGTGCAAG-TTGATTATAT
1 AGCACTAAGTGTGCAAGTTTGATTATAT
*
97167841 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
97167855 GGACTTAATA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 23 0.35
28 42 0.65
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCAAGTTTGATTATAT
Found at i:97167866 original size:27 final size:27
Alignment explanation
Indices: 97167758--97167868 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
97167748 TAAATTGTAC
* * *
97167758 AGCACTAAGTGTGCAAGTTTGATTATGT
1 AGCACTAAGTGTGCAA-CTTGAATATAT
** *
97167786 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
97167814 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
97167841 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
97167868 A
1 A
97167869 CTTTTGAATC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
27 31 0.42
28 41 0.56
29 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:97174565 original size:6 final size:6
Alignment explanation
Indices: 97174550--97174648 Score: 148
Period size: 6 Copynumber: 16.8 Consensus size: 6
97174540 CATAAAAGAT
* * * *
97174550 AAATA- AAATAA AAATA- AAATAA AAATAA AAATAA AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
97174596 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
97174644 AAATA
1 AAATA
97174649 AGATAAACCA
Statistics
Matches: 91, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
5 10 0.11
6 81 0.89
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (6 bp):
AAATAG
Found at i:97178138 original size:15 final size:14
Alignment explanation
Indices: 97178120--97178153 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
97178110 GTATGATAAA
97178120 TAATTAAGTTGTTCT
1 TAATTAAG-TGTTCT
*
97178135 TAATTATGTGTTCT
1 TAATTAAGTGTTCT
97178149 TAATT
1 TAATT
97178154 CTTGTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (14 bp):
TAATTAAGTGTTCT
Found at i:97181988 original size:55 final size:55
Alignment explanation
Indices: 97181884--97181989 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 55
97181874 CAAAGCATCG
* * *
97181884 CACGCCCGTGTGGAAGAACCGTGGTCGAACCTGCCAAAATAGCATGGGCGTTCGA
1 CACGCCCGTGTGGAACAACCGTGGTCGAACCTGCCAAAATAACACGGGCGTTCGA
* * * ** *
97181939 CACGCCCGTGTGGAACACCCGTGGTTGAAGCTGTTAAATTAACACGGGCGT
1 CACGCCCGTGTGGAACAACCGTGGTCGAACCTGCCAAAATAACACGGGCGT
97181990 GGGGCTTGCA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 42 1.00
ACGTcount: A:0.25, C:0.26, G:0.30, T:0.19
Consensus pattern (55 bp):
CACGCCCGTGTGGAACAACCGTGGTCGAACCTGCCAAAATAACACGGGCGTTCGA
Found at i:97186772 original size:15 final size:15
Alignment explanation
Indices: 97186752--97186783 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
97186742 ATCTTCATTC
97186752 AATCGATTTTTCCAA
1 AATCGATTTTTCCAA
97186767 AATCGATTTTTCCAA
1 AATCGATTTTTCCAA
97186782 AA
1 AA
97186784 GCAATTCTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (15 bp):
AATCGATTTTTCCAA
Found at i:97188743 original size:29 final size:30
Alignment explanation
Indices: 97188701--97188758 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
97188691 CATGGGCTGG
* *
97188701 CACATAGGCGTGTGGCCTGCC-GTGTGGAT
1 CACATAGGCGTGTGCCCAGCCTGTGTGGAT
*
97188730 CACATGGGCGTGTGCCCAGCCTGTGTGGA
1 CACATAGGCGTGTGCCCAGCCTGTGTGGA
97188759 AAATGCCCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.14, C:0.26, G:0.38, T:0.22
Consensus pattern (30 bp):
CACATAGGCGTGTGCCCAGCCTGTGTGGAT
Found at i:97196526 original size:22 final size:22
Alignment explanation
Indices: 97196501--97196543 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
97196491 ATAAGCTCAT
*
97196501 TTACATTCAATTAATAAATGTA
1 TTACATTCAATCAATAAATGTA
97196523 TTACATTCAATCAATAAATGT
1 TTACATTCAATCAATAAATGT
97196544 GAATTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.40
Consensus pattern (22 bp):
TTACATTCAATCAATAAATGTA
Found at i:97199595 original size:3 final size:3
Alignment explanation
Indices: 97199587--97199636 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
97199577 CATTTAACTG
*
97199587 TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
97199635 TA
1 TA
97199637 AAAACTAGAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:97202388 original size:32 final size:30
Alignment explanation
Indices: 97202319--97202388 Score: 77
Period size: 33 Copynumber: 2.2 Consensus size: 30
97202309 AAATTTGAAT
** *
97202319 CCACACGCCCATGTGGCTAGCCCGTGTGGG
1 CCACACGCCCAAATGGCTAGCCCGTGTGGA
*
97202349 CCTACACGCCCAAAATGGCTTAGCTCGTGTGGA
1 CC-ACACGCCC-AAATGGC-TAGCCCGTGTGGA
97202382 CCACACG
1 CCACACG
97202389 GCTTGGCACA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 2 0.06
31 8 0.24
32 10 0.30
33 13 0.39
ACGTcount: A:0.20, C:0.36, G:0.27, T:0.17
Consensus pattern (30 bp):
CCACACGCCCAAATGGCTAGCCCGTGTGGA
Found at i:97205368 original size:15 final size:16
Alignment explanation
Indices: 97205341--97205372 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
97205331 AGAAGTTATG
97205341 AATCTTGTTCATCAAA
1 AATCTTGTTCATCAAA
97205357 AATCTT-TTCATCAAA
1 AATCTTGTTCATCAAA
97205372 A
1 A
97205373 GACCAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.38
Consensus pattern (16 bp):
AATCTTGTTCATCAAA
Found at i:97208423 original size:36 final size:37
Alignment explanation
Indices: 97208382--97208517 Score: 152
Period size: 36 Copynumber: 3.6 Consensus size: 37
97208372 ATAATCTTTA
*
97208382 AGGATATGCAATCTTAGATATGATA-CAATTTTAGAT
1 AGGATATGCAATCTTAGATATGATAGCAATATTAGAT
* *
97208418 AGGATATACAATCTTAGATATGATATGTAATATTAGAT
1 AGGATATGCAATCTTAGATATGATA-GCAATATTAGAT
* *
97208456 ATGATA--CAATCTTAGATATGATATGCAATCTTAGAT
1 AGGATATGCAATCTTAGATATGATA-GCAATATTAGAT
* *
97208492 ATGATATGTAATCTTGAAGATATGAT
1 AGGATATGCAATCTT--AGATATGAT
97208518 CTTGTAATCT
Statistics
Matches: 87, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
36 58 0.67
38 20 0.23
40 9 0.10
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (37 bp):
AGGATATGCAATCTTAGATATGATAGCAATATTAGAT
Found at i:97208428 original size:19 final size:19
Alignment explanation
Indices: 97208384--97208517 Score: 141
Period size: 19 Copynumber: 7.2 Consensus size: 19
97208374 AATCTTTAAG
*
97208384 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
* *
97208403 G--ATACAATTTTAGATAG
1 GATATACAATCTTAGATAT
97208420 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
** *
97208439 GATATGTAATATTAGATAT
1 GATATACAATCTTAGATAT
97208458 G--ATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
97208475 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
**
97208494 GATATGTAATCTTGAAGATAT
1 GATATACAATCTT--AGATAT
97208515 GAT
1 GAT
97208518 CTTGTAATCT
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
17 28 0.29
19 59 0.61
21 9 0.09
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:97208454 original size:55 final size:55
Alignment explanation
Indices: 97208384--97208517 Score: 205
Period size: 55 Copynumber: 2.4 Consensus size: 55
97208374 AATCTTTAAG
* *
97208384 GATATGCAATCTTAGATATGATACAATTTTAGATAGGATATACAATCTTAGATAT
1 GATATGTAATCTTAGATATGATACAATCTTAGATAGGATATACAATCTTAGATAT
* * *
97208439 GATATGTAATATTAGATATGATACAATCTTAGATATGATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATATGATACAATCTTAGATAGGATATACAATCTTAGATAT
97208494 GATATGTAATCTTGAAGATATGAT
1 GATATGTAATCTT--AGATATGAT
97208518 CTTGTAATCT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
55 62 0.87
57 9 0.13
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (55 bp):
GATATGTAATCTTAGATATGATACAATCTTAGATAGGATATACAATCTTAGATAT
Found at i:97208526 original size:22 final size:21
Alignment explanation
Indices: 97208433--97208534 Score: 94
Period size: 19 Copynumber: 5.2 Consensus size: 21
97208423 ATACAATCTT
*
97208433 AGATATGATATGTAATATT--
1 AGATATGATATGTAATCTTGA
*
97208452 AGATATGATA--CAATCTT--
1 AGATATGATATGTAATCTTGA
*
97208469 AGATATGATATGCAATCTT--
1 AGATATGATATGTAATCTTGA
97208488 AGATATGATATGTAATCTTGA
1 AGATATGATATGTAATCTTGA
* *
97208509 AGATATGATCTTGTAATCTTGG
1 AGATATGAT-ATGTAATCTTGA
97208531 AGAT
1 AGAT
97208535 TTAATTTGTA
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
17 15 0.21
19 35 0.48
21 9 0.12
22 14 0.19
ACGTcount: A:0.37, C:0.07, G:0.18, T:0.38
Consensus pattern (21 bp):
AGATATGATATGTAATCTTGA
Found at i:97212378 original size:79 final size:79
Alignment explanation
Indices: 97212247--97212402 Score: 312
Period size: 79 Copynumber: 2.0 Consensus size: 79
97212237 AGAAAAATGA
97212247 CACTGTCGACTCCACACAGCCGTGTGTGGGACTGTGTGTGACACGCAGTCTGCGTTATTTGGGTC
1 CACTGTCGACTCCACACAGCCGTGTGTGGGACTGTGTGTGACACGCAGTCTGCGTTATTTGGGTC
97212312 GTGTTGACCACACG
66 GTGTTGACCACACG
97212326 CACTGTCGACTCCACACAGCCGTGTGTGGGACTGTGTGTGACACGCAGTCTGCGTTATTTGGGTC
1 CACTGTCGACTCCACACAGCCGTGTGTGGGACTGTGTGTGACACGCAGTCTGCGTTATTTGGGTC
97212391 GTGTTGACCACA
66 GTGTTGACCACA
97212403 TGGGCGTGTG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.17, C:0.26, G:0.30, T:0.27
Consensus pattern (79 bp):
CACTGTCGACTCCACACAGCCGTGTGTGGGACTGTGTGTGACACGCAGTCTGCGTTATTTGGGTC
GTGTTGACCACACG
Found at i:97215627 original size:25 final size:25
Alignment explanation
Indices: 97215599--97215655 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
97215589 AAAATGGTGA
97215599 GTTTTTTTATACATAAAAAAATATT
1 GTTTTTTTATACATAAAAAAATATT
97215624 GTTTTTTTATACATAAAAAAATATT
1 GTTTTTTTATACATAAAAAAATATT
*
97215649 ATTTTTT
1 GTTTTTT
97215656 ATGTAAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (25 bp):
GTTTTTTTATACATAAAAAAATATT
Found at i:97216143 original size:18 final size:18
Alignment explanation
Indices: 97216122--97216157 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
97216112 CAATTAAACC
97216122 ATTTGATTGATATATTTA
1 ATTTGATTGATATATTTA
* *
97216140 ATTTGATTTATTTATTTA
1 ATTTGATTGATATATTTA
97216158 TAATTGAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (18 bp):
ATTTGATTGATATATTTA
Found at i:97216216 original size:18 final size:18
Alignment explanation
Indices: 97216195--97216237 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
97216185 ACAATTTAAA
97216195 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
97216213 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
97216231 ATGTAAA
1 ATATAAA
97216238 AATAGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:97219147 original size:26 final size:26
Alignment explanation
Indices: 97219111--97219162 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
97219101 CACCACTGAA
* *
97219111 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
97219137 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
97219163 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:97219239 original size:70 final size:71
Alignment explanation
Indices: 97219123--97219273 Score: 241
Period size: 72 Copynumber: 2.1 Consensus size: 71
97219113 GGGGAATCAT
*
97219123 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTT-CATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
97219187 ATATCG
66 ATATCG
* ***
97219193 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATG
97219258 GATATCG
65 GATATCG
97219265 CACTTAGCA
1 CACTTAGCA
97219274 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 16 0.22
71 28 0.38
72 30 0.41
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:97219316 original size:104 final size:104
Alignment explanation
Indices: 97219192--97219415 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
97219182 AATGGATATC
97219192 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* * *
97219257 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CACACATAGCACCACCAATAAACCGGGGAATCA
97219296 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
97219361 GGATCACACACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACACACATAGCACCACCAATAAACCGGGGAATCA
**
97219400 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
97219416 TTTATATACA
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 111 0.99
105 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACACACATAGCACCACCAATAAACCGGGGAATCA
Found at i:97219777 original size:29 final size:29
Alignment explanation
Indices: 97219744--97219807 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
97219734 TAATCCACCA
97219744 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
97219773 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
97219803 CCCAA
1 CCCAA
97219808 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:97219781 original size:30 final size:30
Alignment explanation
Indices: 97219751--97219807 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
97219741 CCACCCAACT
97219751 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
97219780 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
97219808 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:97226867 original size:104 final size:102
Alignment explanation
Indices: 97226745--97226966 Score: 365
Period size: 104 Copynumber: 2.2 Consensus size: 102
97226735 AATGGATATC
97226745 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
97226810 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-C-CACATAGCACCACC-ATAAACCGGGGAATCA
97226849 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
*
97226914 GGATCACCACATAGCACCACCATAAATCGGGGAATCA
66 GGATCACCACATAGCACCACCATAAACCGGGGAATCA
**
97226951 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
97226967 TTTATATACA
Statistics
Matches: 112, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
102 28 0.25
103 13 0.12
104 70 0.62
105 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.18
Consensus pattern (102 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACCACATAGCACCACCATAAACCGGGGAATCA
Found at i:97227325 original size:29 final size:29
Alignment explanation
Indices: 97227292--97227355 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
97227282 TAATCCACCA
97227292 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
97227321 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
97227351 CCCAA
1 CCCAA
97227356 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:97227329 original size:30 final size:30
Alignment explanation
Indices: 97227299--97227355 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
97227289 CCACCCAACT
97227299 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
97227328 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
97227356 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:97231903 original size:62 final size:63
Alignment explanation
Indices: 97231772--97231907 Score: 184
Period size: 62 Copynumber: 2.2 Consensus size: 63
97231762 TGGCCAGGGT
* * ** *
97231772 ACATGCCCGTGTCCCTGACCGTGTAGCTTTTATACCACAAACAGTGAGTTACACGACCTGGGC
1 ACATGCCCGTGTCCCTGACCGTGTAGCTCTTATACCACAAACAGGGAGTTACACGACCCAGAC
* * *
97231835 ACATGCCCGTGTCCCTGGCCGTGT-GGTCTTATACCACAAACAGGGAGTTACACGGCCCAGAC
1 ACATGCCCGTGTCCCTGACCGTGTAGCTCTTATACCACAAACAGGGAGTTACACGACCCAGAC
*
97231897 ATATGCCCGTG
1 ACATGCCCGTG
97231908 CTCGTGTGGT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
62 41 0.64
63 23 0.36
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (63 bp):
ACATGCCCGTGTCCCTGACCGTGTAGCTCTTATACCACAAACAGGGAGTTACACGACCCAGAC
Found at i:97232993 original size:229 final size:229
Alignment explanation
Indices: 97232572--97233017 Score: 610
Period size: 229 Copynumber: 1.9 Consensus size: 229
97232562 GTCCTTGGCT
* *
97232572 GTGTGGCGTTGACAGCCACTATTTTCAGCAACCGAAACTTACAAAAATTAAGATTTTCGGTATGT
1 GTGTGGCGTTGACAGCCACTATTTCCAGCAACCGAAACTTACAAAAATTAAGATTTTCGGTATGC
* * * *
97232637 ATCTGGTTTTATTTGGCGGAATAACACAGTGGAGACTACCCGAAACCTTGAACAAAACAGAAGGA
66 ACCTAGTTTTATTTGACGGAATAACACAGTGGAGACTACCAGAAACCTTGAACAAAACAGAAGGA
* * *
97232702 ATCAGACTAACTCAGCAGAATAATGTCTCTTGCAATGTCCTCGACTAAACAGTAATCAATCGAGT
131 ATCAGACTAACTCAGCAGAATAACGTCTCTTGCAATATCCTCGACTAAACAGTAACCAATCGAGT
*
97232767 GTTTAACAGGACGTCAAGCAAACAAGCAAAATCC
196 GTTTAACAGAACGTCAAGCAAACAAGCAAAATCC
* * * ** *
97232801 GTGTGGCGTTGACAGCCATTATTTCCAGCGATCGAAACTTGTAAAAATTAAGATTTTTGGTATGC
1 GTGTGGCGTTGACAGCCACTATTTCCAGCAACCGAAACTTACAAAAATTAAGATTTTCGGTATGC
* * * * *
97232866 ACCTAGTTTTATTTGACGGAATAGCATAGTGGAGACTACTTAG-AACCTTGTACGAAACAGAAGG
66 ACCTAGTTTTATTTGACGGAATAACACAGTGGAGACTAC-CAGAAACCTTGAACAAAACAGAAGG
** * *
97232930 AATCAGACTAA--CATGGTGAAATAACGTCTCTTGCAATATCCTCGCCTAAATAGTAACCAATCG
130 AATCAGACTAACTCA-GCAG-AATAACGTCTCTTGCAATATCCTCGACTAAACAGTAACCAATCG
*
97232993 AGTGTTTAATAGAACGTCAAGCAAA
193 AGTGTTTAACAGAACGTCAAGCAAA
97233018 GGAGCAAACT
Statistics
Matches: 188, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
227 2 0.01
228 2 0.01
229 183 0.97
230 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (229 bp):
GTGTGGCGTTGACAGCCACTATTTCCAGCAACCGAAACTTACAAAAATTAAGATTTTCGGTATGC
ACCTAGTTTTATTTGACGGAATAACACAGTGGAGACTACCAGAAACCTTGAACAAAACAGAAGGA
ATCAGACTAACTCAGCAGAATAACGTCTCTTGCAATATCCTCGACTAAACAGTAACCAATCGAGT
GTTTAACAGAACGTCAAGCAAACAAGCAAAATCC
Found at i:97239469 original size:62 final size:62
Alignment explanation
Indices: 97239337--97239487 Score: 180
Period size: 62 Copynumber: 2.4 Consensus size: 62
97239327 TGTGTGACTC
* * *
97239337 ACACGGCCTAGGTACACGCCCGTGTCCCTGACCATGTGGCTTTTATACCACAAACAGTGAGTT
1 ACACGGCCTAAGCACACG-CCGTGTCCCTGACCATGTGGCTATTATACCACAAACAGTGAGTT
* * * * *
97239400 GCACGGCCTAAGCACACGTCCGTGTCCTTGGCCGTGTGG-TATTATACCACAAATAGTGAGTT
1 ACACGGCCTAAGCACACG-CCGTGTCCCTGACCATGTGGCTATTATACCACAAACAGTGAGTT
97239462 ACACGGCCT-AGACACACGCTCGTGTC
1 ACACGGCCTAAG-CACACGC-CGTGTC
97239488 TGTTGCCCGT
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
61 3 0.04
62 41 0.54
63 32 0.42
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (62 bp):
ACACGGCCTAAGCACACGCCGTGTCCCTGACCATGTGGCTATTATACCACAAACAGTGAGTT
Found at i:97244000 original size:42 final size:42
Alignment explanation
Indices: 97243942--97244055 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 42
97243932 GTTTCAATGT
* * * * *
97243942 CATATCCCTGATATGGTCTTACATGAAAT-ATCATATCGATGC
1 CATATCCCCGACATGGTCTTACACGAAATCA-CATACCGAGGC
* *
97243984 CATGTCCCCGACATGGTCTTATACGAAATCACATACCGAGGC
1 CATATCCCCGACATGGTCTTACACGAAATCACATACCGAGGC
* * * *
97244026 CATATCCCGGATATGGTCTTATACGGAATC
1 CATATCCCCGACATGGTCTTACACGAAATC
97244056 TTAATAACCT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 59 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
CATATCCCCGACATGGTCTTACACGAAATCACATACCGAGGC
Found at i:97248103 original size:125 final size:125
Alignment explanation
Indices: 97247879--97248124 Score: 438
Period size: 125 Copynumber: 2.0 Consensus size: 125
97247869 TTCATAGCAA
* *
97247879 ATAAAGCAAGTAAGATATGCCAATATAAGTTACAAATACGACATGAATAATTTTTATACCAACAT
1 ATAAAGCAAGTAAGATATGCCAATATAAGTTACAAATACAACATGAATAATTTTCATACCAACAT
* *
97247944 AATTTTGATAACAATAAATAATGCATGCAATAGGAGTATGTATATATAAACTTTCAACAT
66 AATTTTAATAACAATAAATAATGCATGCAATAGGAGTATGTATATATAAAATTTCAACAT
97248004 ATAAAGCAAGTAAGATATGCCAATATAAGTTACAAATACAACATGAATAATTTTCATACCAACAT
1 ATAAAGCAAGTAAGATATGCCAATATAAGTTACAAATACAACATGAATAATTTTCATACCAACAT
* *
97248069 AATTTTAATAACAATAAATAATTCATGCAGTAGGAGTATGTATATATAAAATTTCA
66 AATTTTAATAACAATAAATAATGCATGCAATAGGAGTATGTATATATAAAATTTCA
97248125 TAAAAATAAA
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
125 115 1.00
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (125 bp):
ATAAAGCAAGTAAGATATGCCAATATAAGTTACAAATACAACATGAATAATTTTCATACCAACAT
AATTTTAATAACAATAAATAATGCATGCAATAGGAGTATGTATATATAAAATTTCAACAT
Found at i:97248342 original size:5 final size:5
Alignment explanation
Indices: 97248300--97248364 Score: 53
Period size: 5 Copynumber: 12.6 Consensus size: 5
97248290 ATAAATTTAT
* *
97248300 ATATA ATAAA ATATA A-ATA ATATA TCCATATA AAATA ATATA ATA-A
1 ATATA ATATA ATATA ATATA ATATA ---ATATA ATATA ATATA ATATA
*
97248346 TATATA ATATA ATAAA ATA
1 -ATATA ATATA ATATA ATA
97248365 AATGGATTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
4 5 0.10
5 38 0.78
6 1 0.02
8 5 0.10
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (5 bp):
ATATA
Found at i:97248446 original size:20 final size:18
Alignment explanation
Indices: 97248397--97248453 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 18
97248387 ATAAAGTATA
97248397 TAAATATAACATATAATTTT
1 TAAA-ATAA-ATATAATTTT
*
97248417 TAATATTAAATAGTAATATTT
1 TAA-AATAAATA-TAAT-TTT
97248438 TAAAATAAATA-AATTT
1 TAAAATAAATATAATTT
97248454 ATAAGTGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 2 0.06
18 3 0.09
19 3 0.09
20 17 0.53
21 7 0.22
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (18 bp):
TAAAATAAATATAATTTT
Found at i:97249786 original size:12 final size:11
Alignment explanation
Indices: 97249769--97249802 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
97249759 TACAAAACTG
97249769 TTTATTTTATTT
1 TTTA-TTTATTT
*
97249781 TTTATTTGTTT
1 TTTATTTATTT
97249792 TTTATTTATTT
1 TTTATTTATTT
97249803 ATGGGCCCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (11 bp):
TTTATTTATTT
Found at i:97250064 original size:44 final size:44
Alignment explanation
Indices: 97250016--97250125 Score: 168
Period size: 44 Copynumber: 2.5 Consensus size: 44
97250006 GGAATGCTAG
* * *
97250016 ATCTGTTATCTTCGATCTGCTCTCTGACAATATAGAGACGCCAA
1 ATCTGATATCTTCAATCTGCTCTCTGACAATACAGAGACGCCAA
*
97250060 ATCTGATATCTTCAATCTGCTTTCTGACAATACAGAGACGCCAA
1 ATCTGATATCTTCAATCTGCTCTCTGACAATACAGAGACGCCAA
97250104 ATCT-ACTATCTTCAATCTGCTC
1 ATCTGA-TATCTTCAATCTGCTC
97250126 CTTGTAAACC
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 1 0.02
44 59 0.98
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (44 bp):
ATCTGATATCTTCAATCTGCTCTCTGACAATACAGAGACGCCAA
Found at i:97250702 original size:44 final size:44
Alignment explanation
Indices: 97250642--97250787 Score: 159
Period size: 44 Copynumber: 3.3 Consensus size: 44
97250632 ATCTGCTATG
* ** *
97250642 TCTTCGATTTGCTCTCTGTCGAATATGGAGATGCCAAATCTGTT-
1 TCTTCGATTTGCTCTCTGAC-AATACAGAGACGCCAAATCTGTTA
*
97250686 TCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGTTA
1 TCTTCGATTTGCTCTCTGACAATACAGAGACGCCAAATCTGTTA
* * * * * *
97250730 TCTTCGATCTACTCCCTAACAATATAGAGACGCCAAATCTGCTA
1 TCTTCGATTTGCTCTCTGACAATACAGAGACGCCAAATCTGTTA
* *
97250774 TCCTCCATTTGCTC
1 TCTTCGATTTGCTC
97250788 CTGGTAAACG
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
43 20 0.24
44 65 0.76
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (44 bp):
TCTTCGATTTGCTCTCTGACAATACAGAGACGCCAAATCTGTTA
Found at i:97250911 original size:222 final size:220
Alignment explanation
Indices: 97250016--97251051 Score: 1204
Period size: 221 Copynumber: 4.7 Consensus size: 220
97250006 GGAATGCTAG
* * * *
97250016 ATCTGTTATCTTCGATCTGCTCTCTGACAATATAGAGACGCCAAATCTGATATCTTCA-ATCTGC
1 ATCTGTT-TCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCTG-TATCTT-AGATCTGC
** * * * * * *
97250080 TTTCTGACAATACAGAGACGCCAAATCTACTATCTTCAATCTGCTCCTTGTAAACCCAAGGATGT
63 TCCCTAACAATATAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCTTGTAAACGCAAGGATGC
* * * *
97250145 CAAATCATCTTGGATCTGCTTCAATGCAAAAAAATCTGAAGGTTAGATCTGCTATGACTTCGATC
128 CAAATCATCTTGGATCTACTTCAATGTAAAAAAATCCGAAGGTTAGATCTGCTATGTCTTCGATC
*
97250210 TGCTTTCCGTCGAATAT-GAAGATGCCAA
193 TGCTCTCCGTCGAATATGGAA-ATGCCAA
* *
97250238 ATCTGTTTCTTCAATTTGTTCTCTGACAATACAGATATGCCAAATC---ATCTTAGATCTGCGTC
1 ATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCTGTATCTTAGATCTGC-TC
* ** * *
97250300 AGCGTAA-ACACGT-GA-AAGCCAAATCTGCTATGTCTTTGATCTGCTCCTTGTAAACGCAAGGA
65 --CCTAACA-ATATAGAGACGCCAAATCTGCTA--TCTTCGATCTGCTCCTTGTAAACGCAAGGA
* * * *
97250362 TGCCCAAATTATCTTGGATCTACTCCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTC
125 TG-CCAAATCATCTTGGATCTACTTCAATGTAAAAAAATCCGAAGGTTAGATCTGCTATGTCTTC
* *
97250427 GATTTGCTCTCCGTCGAATATGGAGATGCCAA
189 GATCTGCTCTCCGTCGAATATGGAAATGCCAA
* * *
97250459 ATCTGTTTCTTCGATTTTTTCTCTGACAATACAGAGATTCCAAATC---ATCTTAGATATGCTTC
1 ATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCTGTATCTTAGATCTGC-TC
* ** *
97250521 AGCGTAA-ACACGT-GA-AAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGA
65 --CCTAACA-ATATAGAGACGCCAAATCTGCTA--TCTTCGATCTGCTCCTTGTAAACGCAAGGA
* *
97250583 TGCCAAATCATCTTGGATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCG
125 TGCCAAATCATCTTGGATCTACTTCAATGTAAAAAAATCCGAAGGTTAGATCTGCTATGTCTTCG
* * *
97250648 ATTTGCTCTCTGTCGAATATGGAGATGCCAA
190 ATCTGCTCTCCGTCGAATATGGAAATGCCAA
* * *
97250679 ATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCGATCTACTC
1 ATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCTG-TATCTTAGATCTGCTC
* * * *
97250744 CCTAACAATATAGAGACGCCAAATCTGCTATCCTCCATTTGCTCCTGGTAAACGCAAGGATGCCA
65 CCTAACAATATAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCA
* * * *
97250809 AATCATCTTGGATCTGCTTCGATGTAAAAAAAATCTGAAGGTTAGATCTGTTATGTCTTCGATCT
130 AATCATCTTGGATCTACTTCAATGT-AAAAAAATCCGAAGGTTAGATCTGCTATGTCTTCGATCT
97250874 GCTCTCCGTCGAATATGGAAATGCCAA
194 GCTCTCCGTCGAATATGGAAATGCCAA
*
97250901 ATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCTGCTATCATT-GATCTGTT
1 ATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCTG-TATC-TTAGATCTGCT
* * * * * *
97250965 CCCTGACAATACAGAGACACCAATTCTGAC-ATCTTCGATCTGCTCCTTGAAAACGCAATGATGC
64 CCCTAACAATATAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCCTTGTAAACGCAAGGATGC
* *
97251029 CAAATCATTTTAGATCTACTTCA
128 CAAATCATCTTGGATCTACTTCA
97251052 GCATAAACAC
Statistics
Matches: 714, Mismatches: 81, Indels: 38
0.86 0.10 0.05
Matches are distributed among these distances:
216 1 0.00
217 11 0.02
218 14 0.02
219 3 0.00
220 166 0.23
221 291 0.41
222 199 0.28
223 19 0.03
224 10 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (220 bp):
ATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCTGTATCTTAGATCTGCTCC
CTAACAATATAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAA
ATCATCTTGGATCTACTTCAATGTAAAAAAATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGC
TCTCCGTCGAATATGGAAATGCCAA
Found at i:97250973 original size:44 final size:43
Alignment explanation
Indices: 97250894--97251006 Score: 129
Period size: 44 Copynumber: 2.6 Consensus size: 43
97250884 GAATATGGAA
* * *
97250894 ATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAG
1 ATGCCAAATCTGTATCTTCGATCTGTTCCCTGACAATACAGAG
97250937 ATGCCAAATCTGCTATCATT-GATCTGTTCCCTGACAATACAGAG
1 ATGCCAAATCTG-TATC-TTCGATCTGTTCCCTGACAATACAGAG
** * *
97250981 ACACCAATTCTGACATCTTCGATCTG
1 ATGCCAAATCTG-TATCTTCGATCTG
97251007 CTCCTTGAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
43 14 0.24
44 43 0.73
45 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (43 bp):
ATGCCAAATCTGTATCTTCGATCTGTTCCCTGACAATACAGAG
Found at i:97261883 original size:43 final size:43
Alignment explanation
Indices: 97261832--97262010 Score: 283
Period size: 43 Copynumber: 4.2 Consensus size: 43
97261822 CCGGCATTAC
*
97261832 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
* *
97261875 GCTTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
97261918 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
* * *
97261961 GCCTGTTAGGCACGAAGGCCCGAATATA-AT-ACCAGCACTAG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
97262002 GCCTG-TAGG
1 GCCTGCTAGG
97262011 ATTTATCTCG
Statistics
Matches: 128, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
40 4 0.03
41 15 0.12
42 2 0.02
43 107 0.84
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
Found at i:97267156 original size:25 final size:23
Alignment explanation
Indices: 97267120--97267191 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 23
97267110 TTAATAAATT
97267120 TATAT-ATAATAAAATATAAATAA
1 TATATAAT-ATAAAATATAAATAA
97267143 TATATACCATATAAAATAATATAATAA
1 TATATA--ATATAAAAT-ATA-AATAA
*
97267170 TATATAATATAATAAAATAAAT
1 TATATAATATAA-AATATAAAT
97267192 GGATTTCCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
23 5 0.12
24 3 0.07
25 16 0.38
26 7 0.17
27 11 0.26
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (23 bp):
TATATAATATAAAATATAAATAA
Found at i:97267163 original size:28 final size:27
Alignment explanation
Indices: 97267128--97267189 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
97267118 TTTATATATA
*
97267128 ATAAAAT-ATA-AATAATATATACCAT
1 ATAAAATAATATAATAATATATAACAT
*
97267153 ATAAAATAATATAATAATATATAATAT
1 ATAAAATAATATAATAATATATAACAT
97267180 AATAAAATAA
1 -ATAAAATAA
97267190 ATGGATTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 7 0.22
26 3 0.09
27 13 0.41
28 9 0.28
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (27 bp):
ATAAAATAATATAATAATATATAACAT
Found at i:97267166 original size:5 final size:5
Alignment explanation
Indices: 97267123--97267188 Score: 57
Period size: 5 Copynumber: 13.6 Consensus size: 5
97267113 ATAAATTTAT
* ** *
97267123 ATATA ATAAA ATATA A-ATA ATAT- ATACC ATATA AAATA ATATA ATA-A
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
*
97267170 TATATA ATATA ATAAA ATA
1 -ATATA ATATA ATATA ATA
97267189 AATGGATTTC
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
4 8 0.16
5 40 0.82
6 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (5 bp):
ATATA
Found at i:97267178 original size:15 final size:15
Alignment explanation
Indices: 97267079--97267184 Score: 63
Period size: 14 Copynumber: 7.7 Consensus size: 15
97267069 TATTTTCTAG
97267079 AATATAATACATATAT
1 AATATAATA-ATATAT
* * *
97267095 -TTA-AAAAATATTT
1 AATATAATAATATAT
97267108 AAT-TAATAA-AT-T
1 AATATAATAATATAT
*
97267120 TATAT-ATAATA-A-
1 AATATAATAATATAT
97267132 AATATAAATAATATAT
1 AATAT-AATAATATAT
**
97267148 ACCAT-ATAA-A-AT
1 AATATAATAATATAT
97267160 AATATAATAATATAT
1 AATATAATAATATAT
97267175 AATATAATAA
1 AATATAATAA
97267185 AATAAATGGA
Statistics
Matches: 67, Mismatches: 11, Indels: 25
0.65 0.11 0.24
Matches are distributed among these distances:
12 16 0.24
13 14 0.21
14 19 0.28
15 15 0.22
16 3 0.04
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (15 bp):
AATATAATAATATAT
Found at i:97267183 original size:23 final size:23
Alignment explanation
Indices: 97267121--97267189 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 23
97267111 TAATAAATTT
*
97267121 ATATATAATAAAAT-ATA-AATA
1 ATATATAATATAATAATATAATA
97267142 ATATATACCATATAAAATAATATAATA
1 ATATATA--ATAT--AATAATATAATA
*
97267169 ATATATAATATAATAAAATAA
1 ATATATAATATAATAATATAA
97267190 ATGGATTTCC
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
21 7 0.17
23 12 0.30
25 7 0.17
26 3 0.08
27 11 0.28
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (23 bp):
ATATATAATATAATAATATAATA
Found at i:97267492 original size:30 final size:31
Alignment explanation
Indices: 97267452--97267510 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
97267442 AGTCACTGTG
* *
97267452 AGGACCAAATT-GAAACAAAATTAAAATGTT
1 AGGACCAAATTAAAAACAAAAATAAAATGTT
* *
97267482 AGGACTAAATTAAAAATAAAAATAAAATG
1 AGGACCAAATTAAAAACAAAAATAAAATG
97267511 AAATTATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 10 0.42
31 14 0.58
ACGTcount: A:0.59, C:0.07, G:0.12, T:0.22
Consensus pattern (31 bp):
AGGACCAAATTAAAAACAAAAATAAAATGTT
Found at i:97273332 original size:16 final size:18
Alignment explanation
Indices: 97273297--97273333 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
97273287 TTAACATACT
97273297 TAATTGAGAAATTATATA
1 TAATTGAGAAATTATATA
97273315 TAATTGAGAAATTATATA
1 TAATTGAGAAATTATATA
97273333 T
1 T
97273334 CCACAATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.41
Consensus pattern (18 bp):
TAATTGAGAAATTATATA
Found at i:97274865 original size:42 final size:42
Alignment explanation
Indices: 97274779--97274901 Score: 135
Period size: 42 Copynumber: 3.0 Consensus size: 42
97274769 TCATACATAT
* * * * *
97274779 AATATCATTTCAATGCTATATCCCTGATATGGTCTTACATGA
1 AATATCATATCAATGCCATATCCCCGATATGGTCTTATACGA
*
97274821 AATATCATATCAATGCCATGTCCCCGATATGGTCTTATACGA
1 AATATCATATCAATGCCATATCCCCGATATGGTCTTATACGA
* *
97274863 AATCA-CATA-CTAAGGCCATAT-CTCGATATGGTCTTATAC
1 AAT-ATCATATC-AATGCCATATCCCCGATATGGTCTTATAC
97274902 AGAATCTTAG
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
41 18 0.26
42 51 0.73
43 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (42 bp):
AATATCATATCAATGCCATATCCCCGATATGGTCTTATACGA
Found at i:97275782 original size:431 final size:430
Alignment explanation
Indices: 97274980--97275846 Score: 1662
Period size: 431 Copynumber: 2.0 Consensus size: 430
97274970 TCATTCAGCA
97274980 GAACTTCATCATAATCATCATTGATAAATTTCATAGAAACAAATGTACAATTCAAGCAATATCAA
1 GAACTTCATCATAATCATCATTGATAAATTTCATAGAAACAAATGTACAATTCAAGCAATATCAA
*
97275045 AATATAAAATACATAACATAAGGTAGTATCATTTGCACATGAACTTACCCTGACACCAAGGATAT
66 AATATAAAATACATAACATAAGGTAGTATCATTTGCACATGAACTTACCCCGACACCAAGGATAT
97275110 CAAAAAGGGACCTAACCATCGATTCCTCTTTTCCCCCGTTCTAGGTCTGAACCTCAATTTCCTCG
131 CAAAAAGGGACCTAACCATCGATTCCTCTTTTCCCCCGTTCTAGGTCTGAACCTCAATTTCCTCG
97275175 ATTATTGAGCTTGAAAGTTTGAACAAAACCCTAGCCATGGCTTCCATAGGGGTTTTGGCTGGAGC
196 ATTATTGAGCTTGAAAGTTTGAACAAAACCCTAGCCATGGCTTCCATAGGGGTTTTGGCTGGAGC
*
97275240 AAGAATATGGAGGCCAATTTTGGCTATTTGGGGCTTTTAATTCATTTATTTACTAGGTTACCTGA
261 AAGAATATGGAGGCCAATTTTGGCTATTTGGGGCTTTTAATTCATTTATTTACTAGGTTACCTAA
97275305 ATGCCCCTAACTTAAAAATTGTTCATTTCACCTATCTCATGCCCATTTTTTTCCAACAAATGTTC
326 ATGCCCCTAACTTAAAAATTGTTCATTTCACCTATCTCATGCCCATTTTTTTCCAACAAATGTTC
*
97275370 ATAGCAATTTGACACCTTTAACATCTAGAACTCACATTTT
391 ATAGCAATTTGACACCTTTAAAATCTAGAACTCACATTTT
*
97275410 GAACTTCATCATAATCATCATTGATAAATTTCATAGAAACAAATGTACAATTCAAGTAATATCAA
1 GAACTTCATCATAATCATCATTGATAAATTTCATAGAAACAAATGTACAATTCAAGCAATATCAA
97275475 AATATAAAATACATAACATAAGGTAGTATCATTTGCACATGAACTTACCCCGACACCAAGGATAT
66 AATATAAAATACATAACATAAGGTAGTATCATTTGCACATGAACTTACCCCGACACCAAGGATAT
97275540 CAAAAAGGGACCTAACCATCGATTCCTCTTTTTCCCCCGTTCTAGGTCTGAACCTCAATTTCCTC
131 CAAAAAGGGACCTAACCATCGATTCCTC-TTTTCCCCCGTTCTAGGTCTGAACCTCAATTTCCTC
*
97275605 GATTATTGTGCTTGAAAGTTTGAACAAAACCCTAGCCATGGCTTCCATAGGGGTTTTGGCTGGAG
195 GATTATTGAGCTTGAAAGTTTGAACAAAACCCTAGCCATGGCTTCCATAGGGGTTTTGGCTGGAG
*
97275670 CGAGAATATGGAGGCCAATTTTGGCTATTTGGGGCTTTTAATTCATTTATTTACTAGGTTACCTA
260 CAAGAATATGGAGGCCAATTTTGGCTATTTGGGGCTTTTAATTCATTTATTTACTAGGTTACCTA
97275735 AATGCCCCTAACTTAAAAATTGTTCATTTCACCTATCTCATGCCCATTTTTTTCCAACAAATGTT
325 AATGCCCCTAACTTAAAAATTGTTCATTTCACCTATCTCATGCCCATTTTTTTCCAACAAATGTT
97275800 CATAGCAATTTGACACCTTTAAAATCTAGAACTCACATTTT
390 CATAGCAATTTGACACCTTTAAAATCTAGAACTCACATTTT
*
97275841 GTACTT
1 GAACTT
97275847 TTTACGATTT
Statistics
Matches: 429, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
430 156 0.36
431 273 0.64
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (430 bp):
GAACTTCATCATAATCATCATTGATAAATTTCATAGAAACAAATGTACAATTCAAGCAATATCAA
AATATAAAATACATAACATAAGGTAGTATCATTTGCACATGAACTTACCCCGACACCAAGGATAT
CAAAAAGGGACCTAACCATCGATTCCTCTTTTCCCCCGTTCTAGGTCTGAACCTCAATTTCCTCG
ATTATTGAGCTTGAAAGTTTGAACAAAACCCTAGCCATGGCTTCCATAGGGGTTTTGGCTGGAGC
AAGAATATGGAGGCCAATTTTGGCTATTTGGGGCTTTTAATTCATTTATTTACTAGGTTACCTAA
ATGCCCCTAACTTAAAAATTGTTCATTTCACCTATCTCATGCCCATTTTTTTCCAACAAATGTTC
ATAGCAATTTGACACCTTTAAAATCTAGAACTCACATTTT
Found at i:97283542 original size:17 final size:18
Alignment explanation
Indices: 97283529--97283706 Score: 106
Period size: 18 Copynumber: 9.9 Consensus size: 18
97283519 TAATCTTCAA
97283529 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
97283548 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* * *
97283565 T-ATGATACAATCTTAAATA
1 TGAT-ATGCAATCTTAGA-G
*
97283584 TGAT-TGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
97283602 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
97283618 T-ATAATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
97283637 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* * *
97283653 T-ATGATACAATCTTATATA
1 TGAT-ATGCAATCTTAGA-G
*
97283672 TGAT-TGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
97283690 TGATATACAATCTTAGA
1 TGATATGCAATCTTAGA
97283707 AGATATGATT
Statistics
Matches: 133, Mismatches: 11, Indels: 30
0.76 0.06 0.17
Matches are distributed among these distances:
15 4 0.03
16 4 0.03
17 33 0.25
18 55 0.41
19 31 0.23
20 6 0.05
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:97283597 original size:35 final size:36
Alignment explanation
Indices: 97283528--97283706 Score: 247
Period size: 35 Copynumber: 5.0 Consensus size: 36
97283518 ATAATCTTCA
* *
97283528 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGAT-TACAATCTTAGAT
* * *
97283566 ATGA-TACAATCTTAAATATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATTACAATCTTAGAT
*
97283601 ATGATTGCAATCTTAGATAT-AATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATTACAATCTTAGAT
*
97283636 ATGATTGCAATCTTAGATATGA-TACAATCTTATAT
1 ATGATTGCAATCTTAGATATGATTACAATCTTAGAT
97283671 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATGAT-TACAATCTTAGA
97283707 AGATATGATT
Statistics
Matches: 128, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
35 84 0.66
36 29 0.23
37 11 0.09
38 4 0.03
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (36 bp):
ATGATTGCAATCTTAGATATGATTACAATCTTAGAT
Found at i:97283612 original size:53 final size:54
Alignment explanation
Indices: 97283528--97283706 Score: 256
Period size: 53 Copynumber: 3.3 Consensus size: 54
97283518 ATAATCTTCA
* *
97283528 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGATATGATACAATCTTAAAT
1 ATGATATGCAATCTTAGATATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
*
97283583 ATGAT-TGCAATCTTAGATATGATTGCAATCTTAGATATAATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
* * *
97283636 ATGAT-TGCAATCTTAGATATGA-TACAATCTTATATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATTGCAATCTTAGATATGA-TACAATCTTAGAT
*
97283689 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
97283707 AGATATGATT
Statistics
Matches: 114, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
52 14 0.12
53 67 0.59
54 28 0.25
55 5 0.04
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:97283673 original size:88 final size:90
Alignment explanation
Indices: 97283536--97283706 Score: 301
Period size: 88 Copynumber: 1.9 Consensus size: 90
97283526 CAATGATATG
*
97283536 CAATCTTAGATGTGATATGCAATCTTAGATATGATACAATCTTAAATATGATTGCAATCTTAGAT
1 CAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAAATATGATTGCAATCTTAGAT
*
97283601 ATGAT-TGCAATCTTAGATATAATA
66 ATGATATACAATCTTAGATATAATA
*
97283625 CAATCTTAGATATGAT-TGCAATCTTAGATATGATACAATCTTATATATGATTGCAATCTTAGAT
1 CAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAAATATGATTGCAATCTTAGAT
97283689 ATGATATACAATCTTAGA
66 ATGATATACAATCTTAGA
97283707 AGATATGATT
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
88 52 0.67
89 26 0.33
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (90 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAAATATGATTGCAATCTTAGAT
ATGATATACAATCTTAGATATAATA
Found at i:97289481 original size:20 final size:21
Alignment explanation
Indices: 97289458--97289510 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
97289448 AAAAAAGGCA
*
97289458 AAAAAATAAAA-GAAAAAGAG
1 AAAAAATAAAATAAAAAAGAG
97289478 AAAAAATAAAAATAAAAAAGAG
1 AAAAAAT-AAAATAAAAAAGAG
*
97289500 AAAAAAGAAAA
1 AAAAAATAAAA
97289511 AATGGAGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 7 0.24
21 8 0.28
22 14 0.48
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (21 bp):
AAAAAATAAAATAAAAAAGAG
Found at i:97289503 original size:7 final size:7
Alignment explanation
Indices: 97289465--97289512 Score: 53
Period size: 7 Copynumber: 6.6 Consensus size: 7
97289455 GCAAAAAAAT
97289465 AAAAGAA
1 AAAAGAA
97289472 AAAGAGAA
1 AAA-AGAA
*
97289480 AAAATAA
1 AAAAGAA
97289487 AAATA-AA
1 AAA-AGAA
97289494 AAAGAGAA
1 AAA-AGAA
97289502 AAAAGAA
1 AAAAGAA
97289509 AAAA
1 AAAA
97289513 TGGAGAGGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
7 23 0.64
8 13 0.36
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.04
Consensus pattern (7 bp):
AAAAGAA
Found at i:97290498 original size:43 final size:42
Alignment explanation
Indices: 97290450--97290576 Score: 109
Period size: 43 Copynumber: 3.0 Consensus size: 42
97290440 TTGAAAATTA
97290450 CAAAATTCAGCACCTTAATCCCCTAAGCAGTAGGGTAACAGGT
1 CAAAATT-AGCACCTTAATCCCCTAAGCAGTAGGGTAACAGGT
* * * * *
97290493 CAAAATTACGGATCTT-ATCTCCCTAAGTAGTAGTGG-AGCAGAT
1 CAAAATTA-GCACCTTAATC-CCCTAAGCAGTAG-GGTAACAGGT
* * *
97290536 CGAAGA-T-GCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGT
1 C-AAAATTAGCACCTTAATCCCCTAAGCAGTAGGGTAACAGGT
97290577 TAAAGTATAG
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
40 2 0.03
41 21 0.32
42 6 0.09
43 31 0.48
44 5 0.08
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (42 bp):
CAAAATTAGCACCTTAATCCCCTAAGCAGTAGGGTAACAGGT
Found at i:97291064 original size:207 final size:207
Alignment explanation
Indices: 97290702--97292024 Score: 2128
Period size: 207 Copynumber: 6.4 Consensus size: 207
97290692 TGACGGAGAG
* * *
97290702 CAAATCTAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* *
97290767 GCATCTCTGTATTTTTAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
97290832 CATAGTAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
97290897 GCTTACAAGGAA
196 GCTTACAAGGAA
* * *
97290909 CAAATCGAAGACATAGCTGATTTAGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* *
97290974 GCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
97291039 CATAGCAGATCTGGCCTTCAGATGTTTATACTAAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
97291104 GCTTACAAGGAA
196 GCTTACAAGGAA
* *
97291116 CAAATCGAAGACATTGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* *
97291181 GCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
97291246 CATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGCAAGATCCAAGATGGTTTGGCATCTTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
97291311 GCTTACAAGGAA
196 GCTTACAAGGAA
* * *
97291323 CAAATTGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
97291388 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * *
97291453 CATAGCAGATCTGGGCTTTAGATG-TTATACTGAAGCAAGATCTAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
97291517 GCTTACAAGGAA
196 GCTTACAAGGAA
* * **
97291529 CAAATCGAAGACATAGCTAATTTGGCTTTCACGTGCTTACAATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* * *
97291594 GCATCTCTGTATTATCAGAGAACAAATCAAAGTTTGACGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * * *
97291659 TATAGCAGATCTGGCGTTCAGATGTTTATACTGAAGCAAGATCCAAAATGGTTTGGCATCCTTGC
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
97291724 GCTTACAAGGAG
196 GCTTACAAGGAA
* *
97291736 CAAATCGAAGACATAGCTGATTTGGGTTTCATGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* *
97291801 GCATCTTTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGACAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * ** * * * * * *
97291866 TATAGCAGATTTAACCTTCAGATGATTAGACTGAAG-TAGATCCGAGATGGTTTGGTATCCTTGC
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* *
97291930 ACTTACAAGGAG
196 GCTTACAAGGAA
* * *
97291942 CAAATTGAAGACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
*
97292007 GCATCTCTATATTGTCAG
66 GCATCTCTGTATTGTCAG
97292025 GGAATAAACT
Statistics
Matches: 1040, Mismatches: 75, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
206 300 0.29
207 740 0.71
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (207 bp):
CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAA
Found at i:97291413 original size:87 final size:88
Alignment explanation
Indices: 97291245--97291419 Score: 196
Period size: 87 Copynumber: 2.0 Consensus size: 88
97291235 GAGGGCAGAC
* * *
97291245 ACATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGCAAGATCCAAGATGGTTTGGCATCTTTG
1 ACATAGCAGATCTGGCCTTCAGATGTTTACATTGAAGCAAGATCCAAGATGATTTGGCATCTCTG
* *
97291310 TGCTTACAAGGAACAAATTGAAG
66 TGATTACAAGGAACAAATCGAAG
* * * * *
97291333 ACATAGCTGATTTGGCTTTCATG-TGTTTACGTTGAAGCAAG-TCTAAGATGATTTGGCATCTCT
1 ACATAGCAGATCTGGCCTTCA-GATGTTTACATTGAAGCAAGATCCAAGATGATTTGGCATCTCT
*
97291396 GT-ATTGTC-AGAGAACAAATCGAAG
65 GTGATT-ACAAG-GAACAAATCGAAG
97291420 TTTGGCGTCT
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
86 4 0.05
87 34 0.47
88 34 0.47
89 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (88 bp):
ACATAGCAGATCTGGCCTTCAGATGTTTACATTGAAGCAAGATCCAAGATGATTTGGCATCTCTG
TGATTACAAGGAACAAATCGAAG
Found at i:97291696 original size:413 final size:414
Alignment explanation
Indices: 97290702--97292024 Score: 2155
Period size: 413 Copynumber: 3.2 Consensus size: 414
97290692 TGACGGAGAG
*
97290702 CAAATCTAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
* *
97290767 GCATCTCTGTATTTTTAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
97290832 CATAGTAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * *
97290897 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTAGCTTCCACGTGTTTACGTTGAAGCAAGTC
196 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAGTC
* *
97290962 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCATCTCCATATTCGAC
261 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
* *
97291027 GGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTAAAGCAAGATCCAAGATGGTT
326 GGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGATTATACTGAAGCAAGATCCAAGATGGTT
97291092 TGGCATCCTTGTGCTTACAAGGAA
391 TGGCATCCTTGTGCTTACAAGGAA
* * * *
97291116 CAAATCGAAGACATTGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
* *
97291181 GCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
97291246 CATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGCAAGATCCAAGATGGTTTGGCATCTTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
97291311 GCTTACAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAGTC
196 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAGTC
97291376 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
261 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
* * *
97291441 GGAGGGCAGACACATAGCAGATCTGGGCTTTAGATG-TTATACTGAAGCAAGATCTAAGATGGTT
326 GGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGATTATACTGAAGCAAGATCCAAGATGGTT
97291505 TGGCATCCTTGTGCTTACAAGGAA
391 TGGCATCCTTGTGCTTACAAGGAA
* *
97291529 CAAATCGAAGACATAGCTAATTTGGCTTTCACGTGCTTACAATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
* * *
97291594 GCATCTCTGTATTATCAGAGAACAAATCAAAGTTTGACGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * * *
97291659 TATAGCAGATCTGGCGTTCAGATGTTTATACTGAAGCAAGATCCAAAATGGTTTGGCATCCTTGC
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * *
97291724 GCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGGTTTCATGTGTTTACGTTGAAGCAAATC
196 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAGTC
*
97291789 TAAGATGATTTGGCATCTTTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
261 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
* * * ** * * *
97291854 GGAGGACAGACATATAGCAGATTTAACCTTCAGATGATTAGACTGAAG-TAGATCCGAGATGGTT
326 GGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGATTATACTGAAGCAAGATCCAAGATGGTT
* ** *
97291918 TGGTATCCTTGCACTTACAAGGAG
391 TGGCATCCTTGTGCTTACAAGGAA
* * * *
97291942 CAAATTGAAGACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
*
97292007 GCATCTCTATATTGTCAG
66 GCATCTCTGTATTGTCAG
97292025 GGAATAAACT
Statistics
Matches: 841, Mismatches: 67, Indels: 3
0.92 0.07 0.00
Matches are distributed among these distances:
413 490 0.58
414 351 0.42
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (414 bp):
CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAGTC
TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
GGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGATTATACTGAAGCAAGATCCAAGATGGTT
TGGCATCCTTGTGCTTACAAGGAA
Found at i:97292409 original size:19 final size:19
Alignment explanation
Indices: 97292384--97292491 Score: 145
Period size: 17 Copynumber: 5.9 Consensus size: 19
97292374 ATAATCTTCA
*
97292384 ATGATATGCAGTCTTAGAT
1 ATGATATGCAATCTTAGAT
*
97292403 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
97292422 ATG--ATCCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
97292439 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
97292457 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
97292474 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
97292492 AGATATGATT
Statistics
Matches: 79, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
17 33 0.42
18 17 0.22
19 29 0.37
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:97292453 original size:35 final size:36
Alignment explanation
Indices: 97292395--97292491 Score: 160
Period size: 35 Copynumber: 2.7 Consensus size: 36
97292385 TGATATGCAG
* *
97292395 TCTTAGATGTGATATGCAATCTTAGATATGATCCAA
1 TCTTAGATATGATATGCAATCTTAGATATGATACAA
97292431 TCTTAGATATGAT-TGCAATCTTAGATATGATACAA
1 TCTTAGATATGATATGCAATCTTAGATATGATACAA
*
97292466 TCTTAGATATGATATACAATCTTAGA
1 TCTTAGATATGATATGCAATCTTAGA
97292492 AGATATGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 34 0.60
36 23 0.40
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Consensus pattern (36 bp):
TCTTAGATATGATATGCAATCTTAGATATGATACAA
Found at i:97292479 original size:22 final size:20
Alignment explanation
Indices: 97292418--97292500 Score: 65
Period size: 19 Copynumber: 4.5 Consensus size: 20
97292408 ATGCAATCTT
*
97292418 AGATATGATCCAATCTT---
1 AGATATGATACAATCTTAGA
*
97292435 AGATATGATTGCAATCTT---
1 AGATATGA-TACAATCTTAGA
97292453 AGATATGATACAATCTTAG-
1 AGATATGATACAATCTTAGA
*
97292472 ATATGAT-ATACAATCTTAGA
1 AGAT-ATGATACAATCTTAGA
97292492 AGATATGAT
1 AGATATGAT
97292501 TTTGTAATCT
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
17 16 0.29
18 16 0.29
19 17 0.30
20 7 0.12
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (20 bp):
AGATATGATACAATCTTAGA
Found at i:97302613 original size:31 final size:31
Alignment explanation
Indices: 97302561--97302620 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
97302551 ATTAAACACC
*
97302561 TGAAACTTGTATTGTGGTTCAAATATACAAA
1 TGAAACTTGTATTGTGATTCAAATATACAAA
* *
97302592 TGAAACTT-TGATTTTGATTCAACTATACA
1 TGAAACTTGT-ATTGTGATTCAAATATACA
97302621 GATTTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (31 bp):
TGAAACTTGTATTGTGATTCAAATATACAAA
Found at i:97305962 original size:14 final size:15
Alignment explanation
Indices: 97305935--97305967 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
97305925 CATTTTTAAA
*
97305935 ATTTTTTTATTATAT
1 ATTTTGTTATTATAT
97305950 ATTTTGTTA-TATAT
1 ATTTTGTTATTATAT
97305964 ATTT
1 ATTT
97305968 ATTTTGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (15 bp):
ATTTTGTTATTATAT
Found at i:97313695 original size:37 final size:37
Alignment explanation
Indices: 97313645--97313723 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
97313635 TTATTACGAA
* *
97313645 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
* *
97313682 GTCTTACTCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
97313719 GTCTT
1 GTCTT
97313724 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:97313920 original size:47 final size:47
Alignment explanation
Indices: 97313842--97314145 Score: 464
Period size: 47 Copynumber: 6.5 Consensus size: 47
97313832 CCCTTCGGGA
* * * * * * *
97313842 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97313889 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97313936 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97313983 CTTATCATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97314030 CTTATCACACATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97314077 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97314124 CTTATCACACATATACACTTTC
1 CTTATCACATATATACACTTTC
97314146 TTGGCTGAAT
Statistics
Matches: 236, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 236 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:97322493 original size:220 final size:220
Alignment explanation
Indices: 97322105--97322676 Score: 894
Period size: 220 Copynumber: 2.6 Consensus size: 220
97322095 CAGGCTAATG
* * * *
97322105 CATAGTAGATCTGGCCTTCAGATGTTTACACTGAAGCAAATCCAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATCTGACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
* *
97322170 TTGTCAGAGAACAAATTGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
*
97322235 ACATAGCAGATCTAACCTTTGAATGTTTTCACATCAAAG-AGGATCCAAGATGATTTGGCATCTT
131 ACATAGCAGATCTAACCTTTGAATGTTTTCACATCAAAGCA-GATCCAAGATGATTTGGCATCCT
* *
97322299 TGTGTTTACAAGGAACAAATCGAAGG
195 CGTGTTTACAAGGAACAAATCGAAGA
* * * *
97322325 CATCGCAGATCTGACCTTCAAATGTTAATGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATCTGACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
97322390 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
*
97322455 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTC
131 ACATAGCAGATCTAACCTTTGAATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTC
*
97322520 GTGTTTACAAGGAGCAAATCGAAGA
196 GTGTTTACAAGGAACAAATCGAAGA
* *
97322545 CATAGCAGATCTAACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATTTCTGTA
1 CATAGCAGATCTGACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
* ** * * * * *
97322610 TTTGTCAGGGAACAAATCGAAGAAGTAGATTTGACATATCTATGTTCGACGGAGAGCAAATCGAA
66 -TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
97322675 GA
130 GA
97322677 TATCAACATG
Statistics
Matches: 321, Mismatches: 29, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
220 262 0.82
221 59 0.18
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.27
Consensus pattern (220 bp):
CATAGCAGATCTGACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
ACATAGCAGATCTAACCTTTGAATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTC
GTGTTTACAAGGAACAAATCGAAGA
Found at i:97322569 original size:89 final size:87
Alignment explanation
Indices: 97322442--97322602 Score: 250
Period size: 89 Copynumber: 1.8 Consensus size: 87
97322432 ATTCGACGGA
* ** *
97322442 GAGCAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTAACCTTCAGATGTTTACAC-T-AAAGCAGATCCAAGATG
97322507 ATTTGGCATCCTCGTGTTTACAAG
64 ATTTGGCATCCTCGTGTTTACAAG
* *
97322531 GAGCAAATCGAAGACATAGCAGATCTAACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTAACCTTCAGATGTTTACACTAAAGCAGATCCAAGATGAT
97322596 TTGGCAT
66 TTGGCAT
97322603 TTCTGTATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 40 0.61
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (87 bp):
GAGCAAATCGAAGACATAGCAGATCTAACCTTCAGATGTTTACACTAAAGCAGATCCAAGATGAT
TTGGCATCCTCGTGTTTACAAG
Found at i:97324364 original size:16 final size:15
Alignment explanation
Indices: 97324333--97324367 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
97324323 CATTTTTTAA
*
97324333 ATTTTTTTATTATAT
1 ATTTTGTTATTATAT
97324348 ATTTTGTTATATATAT
1 ATTTTGTTAT-TATAT
97324364 ATTT
1 ATTT
97324368 ATTTTGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
ATTTTGTTATTATAT
Found at i:97344912 original size:46 final size:46
Alignment explanation
Indices: 97344860--97345087 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
97344850 AGTGTGCTCT
* * *
97344860 CTGATATGAAATGTGTAAGACCTTGGTTGAAAGATACCATGGAAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
97344906 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
97344952 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
97344998 GTGATATGAAATGAATAGGACCATGGTTTAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
97345044 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
97345088 TCATGTCAAA
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 165 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:97361305 original size:20 final size:20
Alignment explanation
Indices: 97361262--97361307 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
97361252 AAAATAATCT
* *
97361262 TCATTTTTCTCATTTTACTT
1 TCATTTTGCTCATTTTACTA
97361282 TCATTTTGCTCATTATT-CTA
1 TCATTTTGCTCATT-TTACTA
97361302 TCATTT
1 TCATTT
97361308 AATTTGCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.17, C:0.20, G:0.02, T:0.61
Consensus pattern (20 bp):
TCATTTTGCTCATTTTACTA
Found at i:97365417 original size:46 final size:46
Alignment explanation
Indices: 97365236--97365417 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
97365226 TTTGACATGA
* * * * * *
97365236 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** *
97365282 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
97365328 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
97365374 TACCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
97365418 AGAGCACACT
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 4 0.03
46 121 0.97
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:97369162 original size:15 final size:15
Alignment explanation
Indices: 97369133--97369207 Score: 69
Period size: 15 Copynumber: 4.6 Consensus size: 15
97369123 CTTCTTGCTC
*
97369133 TCCTTCTCTTCTTTTT
1 TCCTT-TCTTTTTTTT
97369149 TCCTTTCTTTTTTTT
1 TCCTTTCTTTTTTTT
97369164 TCCTTCTCTTTTCTTTCT
1 TCCTT-TCTTTT-TTT-T
* *
97369182 TTCTTTCCTCTTTCTTT
1 TCCTTT-CT-TTTTTTT
97369199 TCCTTTCTT
1 TCCTTTCTT
97369208 GCCTCTCCTC
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
15 15 0.30
16 13 0.26
17 10 0.20
18 9 0.18
19 3 0.06
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (15 bp):
TCCTTTCTTTTTTTT
Found at i:97369216 original size:26 final size:24
Alignment explanation
Indices: 97369170--97369223 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 24
97369160 TTTTTCCTTC
* *
97369170 TCTTTTCTTTCTTTCTTTCCTCTT
1 TCTTTTCTTTCTTCCTCTCCTCTT
97369194 TCTTTTCCTTTCTTGCCTCTCCTCTT
1 TCTTTT-CTTTCTT-CCTCTCCTCTT
97369220 TCTT
1 TCTT
97369224 CCTCATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 6 0.23
25 7 0.27
26 13 0.50
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (24 bp):
TCTTTTCTTTCTTCCTCTCCTCTT
Found at i:97369221 original size:21 final size:20
Alignment explanation
Indices: 97369175--97369221 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
97369165 CCTTCTCTTT
* *
97369175 TCTTT-CTTTCTTTCCTCTT
1 TCTTTCCTTTCTTGCCTCTC
97369194 TCTTTTCCTTTCTTGCCTCTCC
1 TC-TTTCCTTTCTTGCCTCT-C
97369216 TCTTTC
1 TCTTTC
97369222 TTCCTCATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.09
20 3 0.13
21 16 0.70
22 2 0.09
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.62
Consensus pattern (20 bp):
TCTTTCCTTTCTTGCCTCTC
Found at i:97369517 original size:3 final size:3
Alignment explanation
Indices: 97369509--97369595 Score: 54
Period size: 3 Copynumber: 28.0 Consensus size: 3
97369499 TTTATTTTTA
* * *
97369509 ATT ATT ATT CTT CATT ATT ATT ATT ACT GTT ATT ATT CATT A-T ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT
* *
97369555 -TGCT ATT AAGT ATT ATT ATT ATG ATT ATT -TT GATT ATT ATT
1 AT--T ATT -ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT
97369596 CCTTTATTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
2 5 0.08
3 49 0.75
4 10 0.15
5 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:97390965 original size:22 final size:21
Alignment explanation
Indices: 97390935--97391019 Score: 70
Period size: 19 Copynumber: 4.2 Consensus size: 21
97390925 TACAAATTAA
97390935 ATCTCCAAGATTACGAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
97390957 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
97390978 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
97390997 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
97391016 ATCT
1 ATCT
97391020 AAGATTGCAT
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
19 38 0.63
21 10 0.17
22 12 0.20
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:97390987 original size:19 final size:19
Alignment explanation
Indices: 97390952--97391032 Score: 144
Period size: 19 Copynumber: 4.2 Consensus size: 19
97390942 AGATTACGAG
97390952 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
97390973 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
97390992 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
97391011 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
97391030 ATC
1 ATC
97391033 CTTAAAGATT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
19 51 0.85
20 1 0.02
21 8 0.13
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:97392911 original size:20 final size:19
Alignment explanation
Indices: 97392872--97392917 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
97392862 CATCCAAACA
*
97392872 CCAGAAAGGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
*
97392891 CGAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCA-TTT
97392911 CCAGAAA
1 CCAGAAA
97392918 TCATTTTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:97393858 original size:26 final size:26
Alignment explanation
Indices: 97393824--97393894 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
97393814 CATTCTGACC
*
97393824 CACAACTCGTGTGAGCA-AGCCCATTT
1 CACAGCTCGTGTGAGCATA-CCCATTT
***
97393850 CACAGCTCGTGTGAGCATATTTATTT
1 CACAGCTCGTGTGAGCATACCCATTT
*
97393876 CACAGCTCGTGTGGGCATA
1 CACAGCTCGTGTGAGCATA
97393895 TATGTACAGG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 38 0.97
27 1 0.03
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCATACCCATTT
Found at i:97393895 original size:26 final size:26
Alignment explanation
Indices: 97393846--97393895 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
97393836 GAGCAAGCCC
97393846 ATTTCACAGCTCGTGTGAGCATATTT
1 ATTTCACAGCTCGTGTGAGCATATTT
*
97393872 ATTTCACAGCTCGTGTGGGCATAT
1 ATTTCACAGCTCGTGTGAGCATAT
97393896 ATGTACAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (26 bp):
ATTTCACAGCTCGTGTGAGCATATTT
Found at i:97400522 original size:22 final size:21
Alignment explanation
Indices: 97400487--97400562 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
97400477 AAAAGGTATC
* *
97400487 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
97400508 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
97400531 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
97400550 TGC-AATCATATCT
1 TACAAATCATATCT
97400563 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:97400579 original size:35 final size:37
Alignment explanation
Indices: 97400516--97400594 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
97400506 ATTACAAAAT
97400516 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
97400552 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
97400587 CATATCAT
1 CATATCAT
97400595 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:97400592 original size:14 final size:15
Alignment explanation
Indices: 97400537--97400592 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
97400527 AGATTGCATA
97400537 TCATATCTAAGATTG
1 TCATATCTAAGATTG
97400552 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
97400570 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
97400587 -CATATC
1 TCATATC
97400593 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:97400602 original size:17 final size:19
Alignment explanation
Indices: 97400523--97400594 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
97400513 AATCATATCT
97400523 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97400542 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
97400560 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
97400577 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
97400595 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:97401019 original size:44 final size:45
Alignment explanation
Indices: 97400965--97401089 Score: 173
Period size: 45 Copynumber: 2.8 Consensus size: 45
97400955 TTTGATCTGT
* **
97400965 TCCCCATCTAATACAGAGACACCAAATCTGTT-TCTTCT-ATCTAC
1 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATC-TCTAATCTAC
* *
97401009 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCTAATTTTC
1 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCTAATCTAC
*
97401054 TCCCCGTCTAATACAGAGATGCCAAATCTGTCATCT
1 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCT
97401090 TGGATCTGCT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
44 32 0.44
45 41 0.56
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (45 bp):
TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCTAATCTAC
Found at i:97401164 original size:92 final size:78
Alignment explanation
Indices: 97401113--97401328 Score: 333
Period size: 78 Copynumber: 2.8 Consensus size: 78
97401103 ATGTAAACAC
*
97401113 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
97401178 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
97401191 ATGAAGGTCAAATCTGCTGTGTCTTCGATCTGCTTCCCATCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
97401256 TGTATCTGCTTCA
66 TGGATCTGCTTCA
* * * **
97401269 ATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
97401329 TTGTTTCTTC
Statistics
Matches: 123, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 123 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:97413077 original size:16 final size:17
Alignment explanation
Indices: 97413056--97413090 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
97413046 GATATGATAC
*
97413056 TAAAAT-TATTAAAAAT
1 TAAAATATATAAAAAAT
97413072 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
97413089 TA
1 TA
97413091 GGGAAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:97413447 original size:14 final size:15
Alignment explanation
Indices: 97413393--97413466 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 15
97413383 TATTGGATAT
97413393 CATATCTAAGATTGCAA
1 CATATCTAAGATTG--A
97413410 TCATATCTAAGATTGCA
1 -CATATCTAAGATTG-A
97413427 TCATATCTAAGATTGCATA
1 -CATATCTAAGATTG---A
97413446 TCATATCTAAGATTG-
1 -CATATCTAAGATTGA
97413461 CATATC
1 CATATC
97413467 ATTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
14 6 0.12
17 16 0.31
18 14 0.27
19 16 0.31
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (15 bp):
CATATCTAAGATTGA
Found at i:97413476 original size:17 final size:19
Alignment explanation
Indices: 97413378--97413468 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
97413368 AATCATATCT
* *
97413378 TCTAATATTGGATATCATA
1 TCTAAGATTGCATATCATA
97413397 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
97413415 TCTAAGATTGC--ATCATA
1 TCTAAGATTGCATATCATA
97413432 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97413451 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
97413469 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
17 17 0.25
18 17 0.25
19 34 0.50
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Done.