Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 297 of 333
Found at i:98060601 original size:30 final size:30
Alignment explanation
Indices: 98060566--98060623 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
98060556 TAGGCACTTC
*
98060566 CACACGGGT-GATTCACAGGCCCGTGTGTGA
1 CACACGGGTAGA-CCACAGGCCCGTGTGTGA
*
98060596 CACACGGGTAGACCACATGCCCGTGTGT
1 CACACGGGTAGACCACAGGCCCGTGTGT
98060624 CATGGCCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (30 bp):
CACACGGGTAGACCACAGGCCCGTGTGTGA
Found at i:98061301 original size:49 final size:49
Alignment explanation
Indices: 98061229--98061328 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
98061219 CCGGATTAGA
98061229 GTCAAATCTAATAAGGGGATCCATAGATCGAGTTAATGCGACAATAGGG
1 GTCAAATCTAATAAGGGGATCCATAGATCGAGTTAATGCGACAATAGGG
*
98061278 GTCAAATCTAATAAGGGGATCCATAGATCGAGTTAATGCGACGATAGGG
1 GTCAAATCTAATAAGGGGATCCATAGATCGAGTTAATGCGACAATAGGG
98061327 GT
1 GT
98061329 TTTAATTAGA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (49 bp):
GTCAAATCTAATAAGGGGATCCATAGATCGAGTTAATGCGACAATAGGG
Found at i:98065352 original size:22 final size:22
Alignment explanation
Indices: 98065307--98065353 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
98065297 AGTCTATTTA
*
98065307 TTTTATTTCTTTTTATTTTTAT
1 TTTTATTTCTTTTTATTTTAAT
*
98065329 TTTTATTTTTCTTTTA-TTTAAT
1 TTTTATTTCT-TTTTATTTTAAT
98065351 TTT
1 TTT
98065354 CTTAAGACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (22 bp):
TTTTATTTCTTTTTATTTTAAT
Found at i:98066066 original size:27 final size:26
Alignment explanation
Indices: 98066036--98066110 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
98066026 AAATCTAAGA
98066036 TTTTATTATT-ATTAATTATTAGTATGG
1 TTTTA-TATTAATT-ATTATTAGTATGG
*
98066063 TTTTATATTAAATTATTATTATTATGG
1 TTTTATATT-AATTATTATTAGTATGG
* *
98066090 TTTCATATTAAGTTATAATTA
1 TTTTATATTAA-TTATTATTA
98066111 TTTAATTGGT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
26 6 0.14
27 33 0.79
28 3 0.07
ACGTcount: A:0.33, C:0.01, G:0.08, T:0.57
Consensus pattern (26 bp):
TTTTATATTAATTATTATTAGTATGG
Found at i:98066111 original size:27 final size:27
Alignment explanation
Indices: 98066053--98066112 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
98066043 ATTATTAATT
* * *
98066053 ATTAGTATGGTTTTATATTAAATTATT
1 ATTATTATGGTTTCATATTAAATTATA
*
98066080 ATTATTATGGTTTCATATTAAGTTATA
1 ATTATTATGGTTTCATATTAAATTATA
98066107 ATTATT
1 ATTATT
98066113 TAATTGGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (27 bp):
ATTATTATGGTTTCATATTAAATTATA
Found at i:98066335 original size:23 final size:22
Alignment explanation
Indices: 98066309--98066365 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
98066299 ATAATGACAA
*
98066309 TTGTAATAAAA-ATATTGGTACAT
1 TTGTAATAAAAGATA-T-GTACAC
*
98066332 TTGTAAGAAATAGATATGTACAC
1 TTGTAATAAA-AGATATGTACAC
98066355 TTGTAATAAAA
1 TTGTAATAAAA
98066366 TAATTAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 1 0.03
23 23 0.79
24 2 0.07
25 3 0.10
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.35
Consensus pattern (22 bp):
TTGTAATAAAAGATATGTACAC
Found at i:98070491 original size:19 final size:19
Alignment explanation
Indices: 98070467--98070506 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
98070457 GGTATAGAAC
98070467 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
98070486 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
98070505 AC
1 AC
98070507 GCTTGTGTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.33, G:0.35, T:0.15
Consensus pattern (19 bp):
ACACGCCCGTGTGCTAGGG
Found at i:98072427 original size:46 final size:46
Alignment explanation
Indices: 98072277--98072549 Score: 243
Period size: 46 Copynumber: 5.8 Consensus size: 46
98072267 AGGATATAAT
*
98072277 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTACATATCTG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC--ACATATC-GAG
* * *
98072327 GCCGATGCGTGTCCCAGACATGTCTTACACTAG--CACATCTC-ACC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCGA-G
* * *
98072371 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCACATTTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCGAG
* * * ** *
98072417 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCGAG
* * *
98072463 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTA-ATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-ACAT-ATCGAG
* * *
98072511 GCCGATGCATGTCCTAAACATGTCTTACACTAGCACACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
98072550 CACATCGCCC
Statistics
Matches: 186, Mismatches: 27, Indels: 24
0.78 0.11 0.10
Matches are distributed among these distances:
44 36 0.19
45 1 0.01
46 67 0.36
47 27 0.15
48 34 0.18
49 14 0.08
50 7 0.04
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCGAG
Found at i:98072519 original size:94 final size:93
Alignment explanation
Indices: 98072273--98072547 Score: 355
Period size: 94 Copynumber: 3.0 Consensus size: 93
98072263 ACATAGGATA
* * * *
98072273 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTACATATCTGTGCCGATGCGTG
1 TAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTC-TACATATGTG-GCCGATGCATG
98072338 TCCCAGACATGTCTTACACTAGCACATCTC
64 TCCCAGACATGTCTTACACTAGCACATCTC
** * *
98072368 -ACCGCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTC-ACATTTCGAGGCCGATGCATGT
1 TAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTACATAT-GTGGCCGATGCATGT
*
98072429 CCCAGACATGTCTTACACTAGCTC-TCGTC
65 CCCAGACATGTCTTACACTAGCACATC-TC
98072458 TTAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTA-ATAATGTGGCCGATGCATG
1 -TAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTACAT-ATGTGGCCGATGCATG
* *
98072522 TCCTAAACATGTCTTACACTAGCACA
64 TCCCAGACATGTCTTACACTAGCACA
98072548 CACACATCGC
Statistics
Matches: 155, Mismatches: 16, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
89 2 0.01
90 41 0.26
91 1 0.01
92 22 0.14
93 27 0.17
94 60 0.39
95 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
TAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTACATATGTGGCCGATGCATGTC
CCAGACATGTCTTACACTAGCACATCTC
Found at i:98075259 original size:24 final size:24
Alignment explanation
Indices: 98075226--98075283 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
98075216 CTATTATAAC
*
98075226 ATTTATGACATCTTTAATTCAAAG
1 ATTTAAGACATCTTTAATTCAAAG
*
98075250 ATTTAAGACATCTTTAATTCAGAG
1 ATTTAAGACATCTTTAATTCAAAG
98075274 ATTTAA-ACAT
1 ATTTAAGACAT
98075284 AAATGTCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 4 0.12
24 28 0.88
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.40
Consensus pattern (24 bp):
ATTTAAGACATCTTTAATTCAAAG
Found at i:98084749 original size:32 final size:30
Alignment explanation
Indices: 98084675--98084756 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 30
98084665 GTATACAATT
* *
98084675 GTAACATAAATATTTAATTACTTTTTATTTAA
1 GTAA-ATAGATATTT-ATTACTTATTATTTAA
98084707 GTAAATAGATATTTATTACTTATTATTATTAA
1 GTAAATAGATATTTATTACTTATTA-T-TTAA
98084739 GTTAAA-AGATATTTATTA
1 G-TAAATAGATATTTATTA
98084757 ATTAAATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 10 0.22
31 10 0.22
32 21 0.47
33 4 0.09
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (30 bp):
GTAAATAGATATTTATTACTTATTATTTAA
Found at i:98089096 original size:15 final size:15
Alignment explanation
Indices: 98089076--98089107 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
98089066 CCGACCTATA
98089076 ATCAAATATAATTCT
1 ATCAAATATAATTCT
98089091 ATCAAATATAATTCT
1 ATCAAATATAATTCT
98089106 AT
1 AT
98089108 GGATCTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (15 bp):
ATCAAATATAATTCT
Found at i:98096835 original size:30 final size:30
Alignment explanation
Indices: 98096801--98096861 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
98096791 TCGTGTAACA
98096801 TATTCATTTTGGGCATTTGACGTCTGTTGG
1 TATTCATTTTGGGCATTTGACGTCTGTTGG
98096831 TATTCATTTTGGGCATTTGACGTCTGTTGG
1 TATTCATTTTGGGCATTTGACGTCTGTTGG
98096861 T
1 T
98096862 CCTAATAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.13, C:0.13, G:0.26, T:0.48
Consensus pattern (30 bp):
TATTCATTTTGGGCATTTGACGTCTGTTGG
Found at i:98098650 original size:35 final size:36
Alignment explanation
Indices: 98098611--98098685 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 36
98098601 ATTAAAATAA
* *
98098611 GAAAAAACATTT-AATATCTAAATAATTTAATTTAT
1 GAAAAAACATTTAAATAACAAAATAATTTAATTTAT
*
98098646 GAAAAAACATTTAAAATAAGAAAATAATTTAATTTAT
1 GAAAAAACATTT-AAATAACAAAATAATTTAATTTAT
98098683 GAA
1 GAA
98098686 TAATAGTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
35 12 0.34
37 23 0.66
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (36 bp):
GAAAAAACATTTAAATAACAAAATAATTTAATTTAT
Found at i:98098675 original size:18 final size:18
Alignment explanation
Indices: 98098630--98098677 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
98098620 TTTAATATCT
** *
98098630 AAATAATTTAATTTATGA
1 AAATAATTTAAAATAAGA
*
98098648 AAAAACATTTAAAATAAGA
1 AAATA-ATTTAAAATAAGA
98098667 AAATAATTTAA
1 AAATAATTTAA
98098678 TTTATGAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (18 bp):
AAATAATTTAAAATAAGA
Found at i:98102488 original size:7 final size:7
Alignment explanation
Indices: 98102478--98102513 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
98102468 ATGTTTTATT
*
98102478 TTTGAAA
1 TTTGAAC
98102485 TTTGAAC
1 TTTGAAC
98102492 TTTGAAC
1 TTTGAAC
98102499 TTTGAAC
1 TTTGAAC
*
98102506 TTTAAAC
1 TTTGAAC
98102513 T
1 T
98102514 ATACACAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (7 bp):
TTTGAAC
Found at i:98107916 original size:63 final size:63
Alignment explanation
Indices: 98107796--98107916 Score: 188
Period size: 63 Copynumber: 1.9 Consensus size: 63
98107786 GAAATGATGG
* * * *
98107796 ATTGGATATACCTTTGGTACAGTAAAGCCTCCGGTTCCTACCTAGAAATGTATCGCCATTCCA
1 ATTGGATATACCTTTGGTACAGGAAAACCTCCGGTTCCTACCTAGAAAGGTACCGCCATTCCA
* *
98107859 ATTGGATATATCTTTGGTACAGGAAAACCTCCGGTTCCTACCTAGACAGGTACCGCCA
1 ATTGGATATACCTTTGGTACAGGAAAACCTCCGGTTCCTACCTAGAAAGGTACCGCCA
98107917 CCCCAATGAC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (63 bp):
ATTGGATATACCTTTGGTACAGGAAAACCTCCGGTTCCTACCTAGAAAGGTACCGCCATTCCA
Found at i:98109471 original size:20 final size:19
Alignment explanation
Indices: 98109432--98109472 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
98109422 AAATTTATGA
* *
98109432 AAGTTTGAGTAAAAATATT
1 AAGTTTAAGTAAAAAAATT
98109451 AAGTTTAAGTAAAAAAAATT
1 AAGTTTAAGT-AAAAAAATT
98109471 AA
1 AA
98109473 ATCTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (19 bp):
AAGTTTAAGTAAAAAAATT
Found at i:98109617 original size:24 final size:25
Alignment explanation
Indices: 98109590--98109639 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
98109580 AAAATTTTAA
*
98109590 TAAATAAAAAATATTTTAAAT-TAT
1 TAAATAAAAAATAATTTAAATATAT
**
98109614 TAAATATTAAATAATTTAAATATAT
1 TAAATAAAAAATAATTTAAATATAT
98109639 T
1 T
98109640 TTTAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TAAATAAAAAATAATTTAAATATAT
Found at i:98109802 original size:25 final size:23
Alignment explanation
Indices: 98109757--98109800 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
98109747 GTTTAAATAA
*
98109757 GTATAAAGTGTGTTAATATATGT
1 GTATAAAATGTGTTAATATATGT
98109780 GTATAAAATGTGTTAATATAT
1 GTATAAAATGTGTTAATATAT
98109801 ATCATGCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (23 bp):
GTATAAAATGTGTTAATATATGT
Found at i:98122313 original size:20 final size:20
Alignment explanation
Indices: 98122279--98122325 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
98122269 GAACAACGAA
98122279 TAAAA-AATCCAATTTGTGC
1 TAAAATAATCCAATTTGTGC
*
98122298 TAAAATAATTCAATTTGTGC
1 TAAAATAATCCAATTTGTGC
*
98122318 TAATATAA
1 TAAAATAA
98122326 CTTGTTTCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.36
Consensus pattern (20 bp):
TAAAATAATCCAATTTGTGC
Found at i:98123804 original size:23 final size:24
Alignment explanation
Indices: 98123778--98123839 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 24
98123768 TCGATAAGAT
*
98123778 GCACTGAAGTGCCACTAT-TCTTC
1 GCACTGAAGTGCCACTATCACTTC
* * * *
98123801 GCACAGATGTG-CAATATCACTTT
1 GCACTGAAGTGCCACTATCACTTC
*
98123824 ACACTGAAGTGCCACT
1 GCACTGAAGTGCCACT
98123840 CACTTGCACA
Statistics
Matches: 28, Mismatches: 9, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
22 5 0.18
23 20 0.71
24 3 0.11
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (24 bp):
GCACTGAAGTGCCACTATCACTTC
Found at i:98124117 original size:16 final size:15
Alignment explanation
Indices: 98124079--98124117 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
98124069 CTCAAGTGAC
98124079 ATTTATTTCATCACT
1 ATTTATTTCATCACT
*
98124094 ATTAATTTCTATCACT
1 ATTTATTTC-ATCACT
*
98124110 GTTTATTT
1 ATTTATTT
98124118 TACCCATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.26, C:0.15, G:0.03, T:0.56
Consensus pattern (15 bp):
ATTTATTTCATCACT
Found at i:98138774 original size:39 final size:39
Alignment explanation
Indices: 98138715--98138812 Score: 169
Period size: 39 Copynumber: 2.5 Consensus size: 39
98138705 GCTCTGATGA
98138715 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
98138754 GCTTTAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
98138793 GCTTCAGCTAGACTTCGGGC
1 GCTTCAGTTAGCCTTCGGGC
98138813 ATCAGATCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.13, C:0.26, G:0.24, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:98138797 original size:21 final size:21
Alignment explanation
Indices: 98138733--98138797 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
98138723 TAGCCTTCGG
98138733 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
** * *
98138754 GCTTTAG-TTAGC-CTT-CGG
1 GCTTCCGTTTAGCACTTATGT
98138772 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
98138793 GCTTC
1 GCTTC
98138798 AGCTAGACTT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 6 0.18
19 8 0.24
20 8 0.24
21 11 0.33
ACGTcount: A:0.12, C:0.25, G:0.22, T:0.42
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:98140064 original size:22 final size:22
Alignment explanation
Indices: 98140024--98140065 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
98140014 AGGACCTATT
*
98140024 TGTAAAAATGTTATAAAATGTG
1 TGTAAAAATGTGATAAAATGTG
* *
98140046 TGTAAAACTGTGATTAAATG
1 TGTAAAAATGTGATAAAATG
98140066 AAAATGTGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.02, G:0.19, T:0.36
Consensus pattern (22 bp):
TGTAAAAATGTGATAAAATGTG
Found at i:98140587 original size:42 final size:42
Alignment explanation
Indices: 98140525--98140644 Score: 152
Period size: 42 Copynumber: 2.8 Consensus size: 42
98140515 AGGGTTATTA
*
98140525 AGACTACGTGTAAGACCATATCTGGGATATGGCATCAATATG
1 AGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATATG
* * * *
98140567 AGACTTCGTGTAAGATCATATTTGGGCTATTGGCATCGATATG
1 AGACTTCGTGTAAGACCATATCTGGGATA-TGGCATCAATATG
* *
98140610 AGA-TTACATGTAAGGCCATATCTGGGATATGGCAT
1 AGACTT-CGTGTAAGACCATATCTGGGATATGGCAT
98140645 TGACATGTTA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
42 33 0.50
43 33 0.50
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
AGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATATG
Found at i:98140622 original size:43 final size:42
Alignment explanation
Indices: 98140533--98140644 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 42
98140523 TAAGACTACG
*
98140533 TGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTCA
* * * *
98140575 TGTAAGATCATATTTGGGCTATTGGCATCGATATGAGA-TTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCAATATGAGACTT-CA
*
98140618 TGTAAGGCCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
98140645 TGACATGTTA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 26 0.44
43 33 0.56
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTCA
Found at i:98142271 original size:16 final size:16
Alignment explanation
Indices: 98142227--98142265 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
98142217 AGAGAACAGG
* *
98142227 GGAAAGAAAGAAGGAA
1 GGAAAAAAAGAAAGAA
98142243 GGAAAAAAAGAAAGAA
1 GGAAAAAAAGAAAGAA
98142259 GGAAAAA
1 GGAAAAA
98142266 GGGAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAAGAA
Found at i:98144385 original size:16 final size:16
Alignment explanation
Indices: 98144364--98144423 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 16
98144354 AATGTGTAAG
98144364 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
*
98144380 ACCATGGCAACTTGATATA-AG
1 ACCATGG----TTGA-A-AGAT
98144401 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
98144417 ACCATGG
1 ACCATGG
98144424 CAACCTGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
15 1 0.03
16 16 0.46
17 4 0.11
20 4 0.11
21 9 0.26
22 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (16 bp):
ACCATGGTTGAAAGAT
Found at i:98144410 original size:37 final size:37
Alignment explanation
Indices: 98144360--98144434 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
98144350 ATGAAATGTG
*
98144360 TAAGACCATGGTTGAAAGATACCATGGCAACTTGATA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATA
98144397 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATA
98144434 T
1 T
98144435 GAAATGTGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.24
Consensus pattern (37 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGATA
Found at i:98144464 original size:46 final size:46
Alignment explanation
Indices: 98144396--98144673 Score: 441
Period size: 46 Copynumber: 6.0 Consensus size: 46
98144386 GCAACTTGAT
* *
98144396 ATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGT
1 ATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
* * *
98144442 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGT
1 ATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
* *
98144488 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
*
98144534 ATAAGACCATGGTTGAAAGATACCATGGTAACCTGACATGAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
* *
98144580 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
*
98144626 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGA
98144672 AT
1 AT
98144674 GAGTAAGACC
Statistics
Matches: 219, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 1 0.00
46 218 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGA
Found at i:98145737 original size:16 final size:17
Alignment explanation
Indices: 98145706--98145738 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
98145696 TTCATAAGTA
98145706 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
98145723 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
98145739 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:98146158 original size:46 final size:46
Alignment explanation
Indices: 98146023--98146158 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
98146013 TTTGACATGA
* * * * * * *
98146023 TGCCATAGTGTCTTTCAACTACGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
98146069 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
98146115 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
98146159 AGAGCACACT
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 4 0.05
46 77 0.95
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:98150074 original size:2 final size:2
Alignment explanation
Indices: 98150067--98150114 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
98150057 TTTCCATCCT
98150067 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
98150109 TC TC TC
1 TC TC TC
98150115 AGCATGGTGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:98153830 original size:6 final size:6
Alignment explanation
Indices: 98153819--98153893 Score: 114
Period size: 6 Copynumber: 12.5 Consensus size: 6
98153809 GCTTCGTACC
* * *
98153819 CACTCT CACTCT CACTCT CATTCT CGCTCT CGCTCT CACTCT CACTCT
1 CACTCT CACTCT CACTCT CACTCT CACTCT CACTCT CACTCT CACTCT
*
98153867 CACTCT CACTCT CTCTCT CACTCT CAC
1 CACTCT CACTCT CACTCT CACTCT CAC
98153894 ATGTGAAACT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.13, C:0.49, G:0.03, T:0.35
Consensus pattern (6 bp):
CACTCT
Found at i:98156954 original size:22 final size:21
Alignment explanation
Indices: 98156925--98156970 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
98156915 TTAGTCATAT
98156925 AATAAATTCATTAATATAATA
1 AATAAATTCATTAATATAATA
* * *
98156946 AATATAATTTATTATTTTAATA
1 AATA-AATTCATTAATATAATA
98156968 AAT
1 AAT
98156971 TATTTAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
AATAAATTCATTAATATAATA
Found at i:98156981 original size:20 final size:22
Alignment explanation
Indices: 98156941--98156986 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
98156931 TTCATTAATA
*
98156941 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
98156963 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
98156983 TAAT
1 TAAT
98156987 TTTATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.61
21 1 0.04
22 8 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:98157546 original size:17 final size:17
Alignment explanation
Indices: 98157526--98157565 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
98157516 ATCCAAATAC
*
98157526 TAAAAAATAA-TATTTTT
1 TAAAAAA-AATTATTTTA
98157543 TAAAAAAAATTATTTTA
1 TAAAAAAAATTATTTTA
98157560 TAAAAA
1 TAAAAA
98157566 TTATTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.10
17 19 0.90
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAAAAAAATTATTTTA
Found at i:98157576 original size:13 final size:13
Alignment explanation
Indices: 98157547--98157599 Score: 88
Period size: 14 Copynumber: 3.9 Consensus size: 13
98157537 ATTTTTTAAA
98157547 AAAAATTATTTTAT
1 AAAAATTATTTT-T
98157561 AAAAATTATTTTT
1 AAAAATTATTTTT
98157574 AAAAATTATTTTT
1 AAAAATTATTTTT
98157587 CAAAAATTATTTT
1 -AAAAATTATTTT
98157600 CAATTAAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.37
14 24 0.63
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (13 bp):
AAAAATTATTTTT
Found at i:98157577 original size:27 final size:27
Alignment explanation
Indices: 98157547--98157599 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
98157537 ATTTTTTAAA
98157547 AAAAATTATTTTAT-AAAAATTATTTTT
1 AAAAATTATTTT-TCAAAAATTATTTTT
98157574 AAAAATTATTTTTCAAAAATTATTTT
1 AAAAATTATTTTTCAAAAATTATTTT
98157600 CAATTAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
AAAAATTATTTTTCAAAAATTATTTTT
Found at i:98162942 original size:18 final size:18
Alignment explanation
Indices: 98162919--98162964 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
98162909 TTAAGATAAA
98162919 TTATGACAATTCTTGTTT
1 TTATGACAATTCTTGTTT
98162937 TTATGACAATTCTTGTTT
1 TTATGACAATTCTTGTTT
*
98162955 TTATTACAAT
1 TTATGACAAT
98162965 CTATATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.54
Consensus pattern (18 bp):
TTATGACAATTCTTGTTT
Found at i:98169663 original size:19 final size:19
Alignment explanation
Indices: 98169639--98169675 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
98169629 TTATAATATA
98169639 TGGTAAAATAAAATACATG
1 TGGTAAAATAAAATACATG
98169658 TGGTAAAATAAAATACAT
1 TGGTAAAATAAAATACAT
98169676 ACATTTCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.05, G:0.14, T:0.27
Consensus pattern (19 bp):
TGGTAAAATAAAATACATG
Found at i:98175517 original size:16 final size:16
Alignment explanation
Indices: 98175496--98175547 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
98175486 AATGGGATTC
98175496 TGAGTAGTGGATTTAG
1 TGAGTAGTGGATTTAG
*
98175512 TGAGTAGAATGGGA-TT-C
1 TGAGTAG--T-GGATTTAG
98175529 TGAGTAGTGGATTTAG
1 TGAGTAGTGGATTTAG
98175545 TGA
1 TGA
98175548 AGAGGTTGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 3 0.10
15 3 0.10
16 10 0.34
17 7 0.24
18 3 0.10
19 3 0.10
ACGTcount: A:0.27, C:0.02, G:0.37, T:0.35
Consensus pattern (16 bp):
TGAGTAGTGGATTTAG
Found at i:98175523 original size:33 final size:33
Alignment explanation
Indices: 98175479--98175547 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
98175469 TGTGAGAGTT
98175479 TGAGTAAAATGGGATTCTGAGTAGTGGATTTAG
1 TGAGTAAAATGGGATTCTGAGTAGTGGATTTAG
*
98175512 TGAGTAGAATGGGATTCTGAGTAGTGGATTTAG
1 TGAGTAAAATGGGATTCTGAGTAGTGGATTTAG
98175545 TGA
1 TGA
98175548 AGAGGTTGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.03, G:0.35, T:0.33
Consensus pattern (33 bp):
TGAGTAAAATGGGATTCTGAGTAGTGGATTTAG
Found at i:98175534 original size:17 final size:17
Alignment explanation
Indices: 98175479--98175535 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
98175469 TGTGAGAGTT
*
98175479 TGAGTAAAATGGGATTC
1 TGAGTAGAATGGGATTC
*
98175496 TGAGTAG--T-GGATTTAG
1 TGAGTAGAATGGGA-TT-C
98175512 TGAGTAGAATGGGATTC
1 TGAGTAGAATGGGATTC
98175529 TGAGTAG
1 TGAGTAG
98175536 TGGATTTAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 3 0.09
15 3 0.09
16 7 0.22
17 13 0.41
18 3 0.09
19 3 0.09
ACGTcount: A:0.30, C:0.04, G:0.35, T:0.32
Consensus pattern (17 bp):
TGAGTAGAATGGGATTC
Found at i:98177442 original size:264 final size:264
Alignment explanation
Indices: 98176972--98177506 Score: 921
Period size: 264 Copynumber: 2.0 Consensus size: 264
98176962 GGCCCAGATT
* * * *
98176972 GAGTTTATTTGTATACTGTTTGTTTGTTTGTACGGGGACTTACACACTGAGTTTACATAAACTTA
1 GAGTTTATTTGTATACTGTTTGTTTGTTTGCACAGGGACTTACACACTAAGTTTACATAAACTCA
* *
98177037 CCCCTTCTGCTTAATCTGTGCAGGTAATCCCCAGACTTGATGAATCGGTGCAGCGGAGGACTTGG
66 CCCCTTCTGCTTAATCTGTGCAGGTAATCCCCAGACTTGACGAATCGGTGCAGCGGAAGACTTGG
98177102 CGTAGGCCATACAAACCTAAACTTTTACTTCAACTTTGGGTATTTAATTTTTAAGTATACTCTGG
131 CGTAGGCCATACAAACCTAAACTTTTACTTCAACTTTGGGTATTTAATTTTTAAGTATACTCTGG
*
98177167 GTTACTTTTTATGTAAATTACGGACTTTCTGGGACTTTTACTTAATTTGGGTTATTATTTATTTT
196 GTTACTTTTTATGTAAATTACGGACTTTCTGGGACTTTTACTTAATTTGGGTTATTATTTACTTT
98177232 TATG
261 TATG
98177236 GAGTTTATTTGTATACTGTTTGTTTGTTTGCACAGGGACTTACACACTAAGTTTACATAAACTCA
1 GAGTTTATTTGTATACTGTTTGTTTGTTTGCACAGGGACTTACACACTAAGTTTACATAAACTCA
*
98177301 CCCCTTTTGCTTAATCTGTGCAGGTAATCCCCAGACTTGACGAATCGGTGCAGCGGAAGACTTGG
66 CCCCTTCTGCTTAATCTGTGCAGGTAATCCCCAGACTTGACGAATCGGTGCAGCGGAAGACTTGG
* * *
98177366 CGGT-GGCCATACAAACCTAAACTTTTACTTTAACTTTGGGTATTTAATTTTTAATTATACTTTG
131 C-GTAGGCCATACAAACCTAAACTTTTACTTCAACTTTGGGTATTTAATTTTTAAGTATACTCTG
* **
98177430 GGTTACTTTTTATGTATATTGTGGACTTTCTGGGACTTTTACTTAATTTGGGTTATTATTTACTT
195 GGTTACTTTTTATGTAAATTACGGACTTTCTGGGACTTTTACTTAATTTGGGTTATTATTTACTT
98177495 TTATG
260 TTATG
98177500 GA-TTTAT
1 GAGTTTAT
98177507 AACTGCTAAG
Statistics
Matches: 256, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
263 5 0.02
264 249 0.97
265 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41
Consensus pattern (264 bp):
GAGTTTATTTGTATACTGTTTGTTTGTTTGCACAGGGACTTACACACTAAGTTTACATAAACTCA
CCCCTTCTGCTTAATCTGTGCAGGTAATCCCCAGACTTGACGAATCGGTGCAGCGGAAGACTTGG
CGTAGGCCATACAAACCTAAACTTTTACTTCAACTTTGGGTATTTAATTTTTAAGTATACTCTGG
GTTACTTTTTATGTAAATTACGGACTTTCTGGGACTTTTACTTAATTTGGGTTATTATTTACTTT
TATG
Found at i:98179471 original size:33 final size:32
Alignment explanation
Indices: 98179422--98179536 Score: 131
Period size: 33 Copynumber: 3.5 Consensus size: 32
98179412 ATGGACTTTT
* * * *
98179422 CCTTTTCTAATTGTACACTCGACGTGCACATTC
1 CCTTTTC-AAGTGTACACACGAAGTGCACATAC
*
98179455 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGT-GTACACACGAAGTGCACATAC
* * *
98179488 CCTTTTCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAA-GTGTACACACGAAGTGCACATAC
98179521 CCTTTTCAAGTGTACA
1 CCTTTTCAAGTGTACA
98179537 TACATAGTGT
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
32 9 0.13
33 60 0.86
34 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACGAAGTGCACATAC
Found at i:98179528 original size:66 final size:64
Alignment explanation
Indices: 98179422--98179577 Score: 161
Period size: 65 Copynumber: 2.4 Consensus size: 64
98179412 ATGGACTTTT
* * * **
98179422 CCTTTTCTAATTGTACACTCGACGTGCACATTCCCTTTTCAAGTGGTACACACGA-AGTGTACAT
1 CCTTTTC-AATTGTACACACAAAGTGCACATAACCTTTTCAAGT-GTACACAC-ATAGTGTACAT
98179486 AC
63 AC
* * **
98179488 CCTTTTCAATTTGTACACACAAAGTGCACATAACCTTTTCAAGTGTACATACATAGTGTACTTTT
1 CCTTTTCAA-TTGTACACACAAAGTGCACATAACCTTTTCAAGTGTACACACATAGTGTACATAC
* *
98179553 CCTTTTCAAGTGGTATACACAAAGT
1 CCTTTTCAA-TTGTACACACAAAGT
98179578 ATACCTTTCC
Statistics
Matches: 76, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
64 1 0.01
65 39 0.51
66 36 0.47
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (64 bp):
CCTTTTCAATTGTACACACAAAGTGCACATAACCTTTTCAAGTGTACACACATAGTGTACATAC
Found at i:98179573 original size:65 final size:66
Alignment explanation
Indices: 98179445--98179577 Score: 162
Period size: 65 Copynumber: 2.0 Consensus size: 66
98179435 TACACTCGAC
** * *
98179445 GTGCACATTCCCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAATTTGTACACACAA
1 GTGCACATAACCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGTGGTACACACAA
98179510 A
66 A
* * ** *
98179511 GTGCACATAACCTTTTCAAGT-GTACATAC-ATAGTGTACTTTTCCTTTTCAAGTGGTATACACA
1 GTGCACATAACCTTTTCAAGTGGTACACACGA-AGTGTACATACCCTTTTCAAGTGGTACACACA
98179574 AA
65 AA
98179576 GT
1 GT
98179578 ATACCTTTCC
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
64 1 0.02
65 37 0.65
66 19 0.33
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (66 bp):
GTGCACATAACCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGTGGTACACACAA
A
Found at i:98179592 original size:33 final size:33
Alignment explanation
Indices: 98179455--98179685 Score: 155
Period size: 33 Copynumber: 6.7 Consensus size: 33
98179445 GTGCACATTC
* * * **
98179455 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
* * ** * **
98179488 CCTTTTCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
* * * *
98179521 CCTTTTCAAGT-GTACATACATAGTGTACTTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
*
98179553 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
98179586 CCTTTTCATA-TGGTATACACAAAGTATACACAAAGTATACCTTT
1 CCTTTTCA-AGTGG--T--AC-------ACACAAAGTATACCTTT
*
98179630 CCTTTTCATA-TGGTATACACAAAGTATACCTTT
1 CCTTTTCA-AGTGGTACACACAAAGTATACCTTT
98179663 CCTTTTCAAGT-GTACACACAAAG
1 CCTTTTCAAGTGGTACACACAAAG
98179686 CGTGCATAAC
Statistics
Matches: 164, Mismatches: 20, Indels: 29
0.77 0.09 0.14
Matches are distributed among these distances:
32 38 0.23
33 91 0.55
34 1 0.01
35 1 0.01
37 1 0.01
40 1 0.01
42 1 0.01
44 30 0.18
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACAAAGTATACCTTT
Found at i:98179614 original size:11 final size:11
Alignment explanation
Indices: 98179598--98179625 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
98179588 TTTTCATATG
98179598 GTATACACAAA
1 GTATACACAAA
98179609 GTATACACAAA
1 GTATACACAAA
98179620 GTATAC
1 GTATAC
98179626 CTTTCCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.18, G:0.11, T:0.21
Consensus pattern (11 bp):
GTATACACAAA
Found at i:98179628 original size:44 final size:44
Alignment explanation
Indices: 98179565--98179658 Score: 188
Period size: 44 Copynumber: 2.1 Consensus size: 44
98179555 TTTTCAAGTG
98179565 GTATACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAA
1 GTATACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAA
98179609 GTATACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAA
1 GTATACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAA
98179653 GTATAC
1 GTATAC
98179659 CTTTCCTTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (44 bp):
GTATACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAA
Found at i:98182448 original size:187 final size:187
Alignment explanation
Indices: 98182112--98182466 Score: 459
Period size: 187 Copynumber: 1.9 Consensus size: 187
98182102 AGAGACACTG
* * * *
98182112 GTCATACTGAGGCGGGACAGCCAGCTCTAGTTTATGATGTACGTCGCCGAGAGGACGGAGATGCT
1 GTCATACTGAGGCGGGACAGCCAGCTCTAATTTATGATGCACGTCACCGAGAGGACAGAGATGCT
* * *
98182177 CCGAACGTCATCACGGGTACATTCTTTATTTAAAATATACTTTATACTGCACTAATAGTTATAGG
66 CCGAACGTCATCACGGGTACATACTTTATTTAAAATATACTTTATACAGCACTAATAGATATAGG
**
98182242 ATCTGATCATTTGTATATAGCTTGTACTGTGTCAGAGAGCATCGGGCAAAGGCGTTA
131 ATCTGATCATTCCTATATAGCTTGTACTGTGTCAGAGAGCATCGGGCAAAGGCGTTA
* * * * *
98182299 GTCATACTGAGGCGAGG-GAGCCGGCTCTAATTTATGCTGCACGTTACCGAGAGGATAGAGATGC
1 GTCATACTGAGGCG-GGACAGCCAGCTCTAATTTATGATGCACGTCACCGAGAGGACAGAGATGC
* * * *
98182363 TCC-AGACGTCATCACGGGTACGTACTTTATTTATAATGTA-TCTTATACAGCACTGATAGATAT
65 TCCGA-ACGTCATCACGGGTACATACTTTATTTAAAATATACT-TTATACAGCACTAATAGATAT
*
98182426 ATGG-TCT-ACTCATTCCTATATAGCTTGTACTGTGTCTGAGA
128 A-GGATCTGA-TCATTCCTATATAGCTTGTACTGTGTCAGAGA
98182467 ATTTGGGTAT
Statistics
Matches: 144, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
186 3 0.02
187 137 0.95
188 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (187 bp):
GTCATACTGAGGCGGGACAGCCAGCTCTAATTTATGATGCACGTCACCGAGAGGACAGAGATGCT
CCGAACGTCATCACGGGTACATACTTTATTTAAAATATACTTTATACAGCACTAATAGATATAGG
ATCTGATCATTCCTATATAGCTTGTACTGTGTCAGAGAGCATCGGGCAAAGGCGTTA
Found at i:98190869 original size:27 final size:27
Alignment explanation
Indices: 98190835--98190889 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 27
98190825 AACTTGACAC
98190835 ATATAATT-TATATAAATAA-AATATGAA
1 ATATAATTAT-TA-AAATAATAATATGAA
98190862 ATATAATTATTAAAATAATAATATGAA
1 ATATAATTATTAAAATAATAATATGAA
98190889 A
1 A
98190890 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 6 0.23
27 19 0.73
28 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (27 bp):
ATATAATTATTAAAATAATAATATGAA
Found at i:98191293 original size:18 final size:19
Alignment explanation
Indices: 98191254--98191297 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
98191244 ATTATTTGGA
98191254 TATTGTATAATTCTTATTT
1 TATTGTATAATTCTTATTT
*
98191273 TATTGT-TAATT-TTGTTAT
1 TATTGTATAATTCTTATT-T
98191291 TATTGTA
1 TATTGTA
98191298 GATGTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.18
18 12 0.55
19 6 0.27
ACGTcount: A:0.25, C:0.02, G:0.09, T:0.64
Consensus pattern (19 bp):
TATTGTATAATTCTTATTT
Found at i:98201729 original size:14 final size:14
Alignment explanation
Indices: 98201691--98201733 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
98201681 CAAAATGTAC
98201691 AATATAATTAAA-T
1 AATATAATTAAATT
98201704 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
98201719 AA-ATAATTTAATT
1 AATATAATTAAATT
98201732 AA
1 AA
98201734 CTGTTTACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:98202254 original size:40 final size:41
Alignment explanation
Indices: 98202201--98202301 Score: 116
Period size: 41 Copynumber: 2.5 Consensus size: 41
98202191 GATAAAAAAC
* * *
98202201 GCAGC-AAAGGTAAAGCATTAGCGGCGTTTTT-GCATAAAT
1 GCAGCAAAAGGTAAAGCAATAACGACGTTTTTCGCATAAAT
* *
98202240 GCAGCAAAAAGTAAAGCAATAACGACGTTTTTCTCATAAAT
1 GCAGCAAAAGGTAAAGCAATAACGACGTTTTTCGCATAAAT
* * *
98202281 GTAGTAAAAGGTAAAGTAATA
1 GCAGCAAAAGGTAAAGCAATA
98202302 GCCATAAATA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 5 0.10
40 22 0.43
41 24 0.47
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.25
Consensus pattern (41 bp):
GCAGCAAAAGGTAAAGCAATAACGACGTTTTTCGCATAAAT
Found at i:98205290 original size:43 final size:43
Alignment explanation
Indices: 98205243--98205325 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
98205233 GTAATTCGAT
*
98205243 ATCGAAGCCTCTGTCCCAGACAAGGTCTTAAACGAAATCTCAA
1 ATCGAAGCCTCTGTCCCAAACAAGGTCTTAAACGAAATCTCAA
* * * * *
98205286 ATCGAGGCCTGTGTCCCAAACACGGTCTTACACGACATCT
1 ATCGAAGCCTCTGTCCCAAACAAGGTCTTAAACGAAATCT
98205326 TAGATCAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (43 bp):
ATCGAAGCCTCTGTCCCAAACAAGGTCTTAAACGAAATCTCAA
Found at i:98206489 original size:5 final size:5
Alignment explanation
Indices: 98206479--98206506 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
98206469 TGAGCATTCG
98206479 ATCGA ATCGA ATCGA ATCGA ATCGA ATC
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATC
98206507 AAAAATTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (5 bp):
ATCGA
Found at i:98210886 original size:23 final size:24
Alignment explanation
Indices: 98210859--98210907 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
98210849 GCAAAACAGA
*
98210859 GTAA-GGTTTCGTGGAAATGGGGG
1 GTAAGGGTCTCGTGGAAATGGGGG
*
98210882 GTAAGGGTCTCGTGGGAATGGGGG
1 GTAAGGGTCTCGTGGAAATGGGGG
98210906 GT
1 GT
98210908 TTGAATAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.18, C:0.06, G:0.51, T:0.24
Consensus pattern (24 bp):
GTAAGGGTCTCGTGGAAATGGGGG
Found at i:98211302 original size:9 final size:9
Alignment explanation
Indices: 98211277--98211315 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
98211267 TTCGAAAAAA
98211277 AATTCGAGTT
1 AATTCGA-TT
*
98211287 GATTCGATT
1 AATTCGATT
98211296 AATTCGATT
1 AATTCGATT
*
98211305 AACTCGATT
1 AATTCGATT
98211314 AA
1 AA
98211316 CTCAATTCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 20 0.77
10 6 0.23
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (9 bp):
AATTCGATT
Found at i:98216452 original size:18 final size:18
Alignment explanation
Indices: 98216429--98216464 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
98216419 TGTGATATTT
98216429 TATTTAATTAG-TAAAATA
1 TATTT-ATTAGATAAAATA
98216447 TATTTATTAGATAAAATA
1 TATTTATTAGATAAAATA
98216465 ATTAAATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (18 bp):
TATTTATTAGATAAAATA
Found at i:98216895 original size:23 final size:27
Alignment explanation
Indices: 98216869--98216922 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
98216859 ATTAAATAGA
98216869 TAATT-ATT-ATATT-TATTATTAT-T
1 TAATTAATTGATATTATATTATTATAT
98216892 TAATTAATTGATATTATATTATTATAT
1 TAATTAATTGATATTATATTATTATAT
98216919 TAAT
1 TAAT
98216923 AAATAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 5 0.19
24 3 0.11
25 5 0.19
26 9 0.33
27 5 0.19
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (27 bp):
TAATTAATTGATATTATATTATTATAT
Found at i:98216915 original size:18 final size:20
Alignment explanation
Indices: 98216871--98216919 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
98216861 TAAATAGATA
*
98216871 ATTATTATATTTATTATTAT
1 ATTATTATATTGATTATTAT
98216891 -TTAATTA-ATTGA-TATTAT
1 ATT-ATTATATTGATTATTAT
98216909 ATTATTATATT
1 ATTATTATATT
98216920 AATAAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 10 0.40
19 11 0.44
20 4 0.16
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
ATTATTATATTGATTATTAT
Found at i:98217099 original size:20 final size:20
Alignment explanation
Indices: 98217071--98217109 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
98217061 ATAATAAAAT
* *
98217071 AAAGTAAAATAAAAAGAAAC
1 AAAGCAAAAGAAAAAGAAAC
*
98217091 AAAGCAAAAGAAACAGAAA
1 AAAGCAAAAGAAAAAGAAA
98217110 AGAAAACAGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.08, G:0.13, T:0.05
Consensus pattern (20 bp):
AAAGCAAAAGAAAAAGAAAC
Found at i:98219319 original size:16 final size:18
Alignment explanation
Indices: 98219275--98219313 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
98219265 TTAGCAAAAT
98219275 TGGGCTCACACACCCATG
1 TGGGCTCACACACCCATG
* *
98219293 TGGGCCCACACACCCGTG
1 TGGGCTCACACACCCATG
98219311 TGG
1 TGG
98219314 TCACACGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.38, G:0.28, T:0.15
Consensus pattern (18 bp):
TGGGCTCACACACCCATG
Found at i:98224740 original size:94 final size:92
Alignment explanation
Indices: 98224638--98224903 Score: 279
Period size: 94 Copynumber: 2.9 Consensus size: 92
98224628 GACGAGGGCT
* * * *
98224638 AGTGTAAGACGTGTCTGGGACATACATCGGTCAC-ATCATGATAGCCCGTGTAAGACCACGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACGATCATGATAGCCAGTGTAAGACCATGTCTG
*
98224702 GGACATGGCATCGGCGTAGAG-GTGAGTACC
65 GGACATGGCATCGGC-TA-AGTGTCA-TACC
* * * * *
98224732 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGCAAGA-CGTGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACGATCATGATAGCCAGTGTAAGACCATGTCTG
* * *
98224796 GGACAT-GCATCGGCTAAGTTTCATGCT
65 GGACATGGCATCGGCTAAGTGTCATACC
* * * * *
98224823 AGTGTAAGACATGTTTGGGACATGCATCAGCACGTATACACGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCACG-AT-CATGATAGCCAGTGTAAGACCATGTCT
98224888 GGGACATGGCATCGGC
64 GGGACATGGCATCGGC
98224904 CTCGATGGAG
Statistics
Matches: 142, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
90 3 0.02
91 34 0.24
92 17 0.12
93 21 0.15
94 50 0.35
95 17 0.12
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACGATCATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCTAAGTGTCATACC
Found at i:98224748 original size:47 final size:48
Alignment explanation
Indices: 98224679--98224944 Score: 196
Period size: 47 Copynumber: 5.6 Consensus size: 48
98224669 CACATCATGA
* * *
98224679 TAGCCCGTGTAAGACCACGTCTGGGACATGGCATCGGCGTAGAGGTGAG
1 TAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTAGAGGTGAG
*
98224728 TA-CCAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGA--TGATG
1 TAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTAGAGGTGA-G
* * * *
98224773 TTAGCCAGTGCAAGA-CGTGTCTGGGACATGCATCGG-CTA-AGTTTCA-
1 -TAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTAGAG-GTGAG
* * * * ***
98224819 T-GCTAGTGTAAGA-CATGTTTGGGACATGCATCAGCACGTATACACGAG
1 TAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGC-C-TAGAGGTGAG
* * *
98224867 -AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATG-GAG
1 TAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTAGAGGTGAG
* *
98224914 ATAGCCAGCGTAAAACCATGTCTGGGACATG
1 -TAGCCAGTGTAAGACCATGTCTGGGACATG
98224945 GCAGCGGCAA
Statistics
Matches: 175, Mismatches: 26, Indels: 33
0.75 0.11 0.14
Matches are distributed among these distances:
44 31 0.18
45 3 0.02
46 16 0.09
47 49 0.28
48 28 0.16
49 41 0.23
50 7 0.04
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (48 bp):
TAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTAGAGGTGAG
Found at i:98224847 original size:44 final size:46
Alignment explanation
Indices: 98224638--98224944 Score: 180
Period size: 47 Copynumber: 6.5 Consensus size: 46
98224628 GACGAGGGCT
* * * * ** *
98224638 AGTGTAAGACGTGTCTGGGACATACATCGGTCACATCATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTTAGCC
* * * * *
98224684 CGTGTAAGACCACGTCTGGGACATGGCATCGGCGT--AGAGGTGAGTACC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGTTAG--CC
*
98224732 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTC-AAGATGTTAGCC
* * *
98224779 AGTGCAAGACGTGTCTGGGACATGCATCGG-CT-AAG-T-TTCATGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTT-A-GCC
* * * * ** *
98224823 AGTGTAAGACATGTTTGGGACATGCATCAGCACGT-ATACACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-C-TCA-AGATGTTAGCC
* *
98224871 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGA-GATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTC-A-AGATGTTAGCC
* *
98224920 AGCGTAAAACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
98224945 GCAGCGGCAA
Statistics
Matches: 204, Mismatches: 38, Indels: 36
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.01
43 2 0.01
44 30 0.15
46 24 0.12
47 57 0.28
48 31 0.15
49 48 0.24
50 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTTAGCC
Found at i:98226512 original size:22 final size:22
Alignment explanation
Indices: 98226487--98226530 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
98226477 ATTTCTAAAT
98226487 TAATAATTAAAATAATG-AATTA
1 TAATAATT-AAATAATGCAATTA
98226509 TAATAATTAAATAATGCAATTA
1 TAATAATTAAATAATGCAATTA
98226531 AGGTAGTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (22 bp):
TAATAATTAAATAATGCAATTA
Found at i:98229494 original size:48 final size:48
Alignment explanation
Indices: 98229432--98229673 Score: 387
Period size: 48 Copynumber: 5.0 Consensus size: 48
98229422 TACAAGACAA
* *
98229432 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAT-AGG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA-G
* *
98229480 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGGG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
98229528 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
98229576 ATATATAGATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * * *
98229624 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
98229672 AT
1 AT
98229674 GTGTGTATAT
Statistics
Matches: 183, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
48 183 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:98242642 original size:9 final size:9
Alignment explanation
Indices: 98242625--98242659 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
98242615 AGTGGACAAA
*
98242625 ATTATAAAT
1 ATTAAAAAT
98242634 ATTAAAAAT
1 ATTAAAAAT
98242643 ATTAAAATAT
1 ATTAAAA-AT
98242653 ATTAAAA
1 ATTAAAA
98242660 TTTATTGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:98242656 original size:10 final size:10
Alignment explanation
Indices: 98242632--98242665 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
98242622 AAAATTATAA
98242632 ATATTAAAA-
1 ATATTAAAAT
98242641 ATATTAAAAT
1 ATATTAAAAT
98242651 ATATTAAAAT
1 ATATTAAAAT
*
98242661 TTATT
1 ATATT
98242666 GGTTAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 9 0.39
10 14 0.61
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
ATATTAAAAT
Found at i:98243683 original size:13 final size:13
Alignment explanation
Indices: 98243665--98243689 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98243655 TCTCAAATCA
98243665 ATCAATCTGATCC
1 ATCAATCTGATCC
98243678 ATCAATCTGATC
1 ATCAATCTGATC
98243690 TAAATCAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (13 bp):
ATCAATCTGATCC
Found at i:98247823 original size:17 final size:16
Alignment explanation
Indices: 98247786--98247836 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
98247776 AATTTTGGAA
* *
98247786 AAAATAAAAATATTAGG
1 AAAATATAAATATTA-T
98247803 AAAACTATAAATATTAT
1 AAAA-TATAAATATTAT
98247820 AAAATATAGAATATTAT
1 AAAATATA-AATATTAT
98247837 TAATATGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 4 0.13
17 16 0.53
18 10 0.33
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (16 bp):
AAAATATAAATATTAT
Found at i:98247892 original size:21 final size:19
Alignment explanation
Indices: 98247867--98247923 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 19
98247857 AATAATATAT
98247867 AAATTTAGAAATTATAGAAA
1 AAATTTAGAAATTATA-AAA
* *
98247887 ACAATTTA-AAAATGTAAAA
1 A-AATTTAGAAATTATAAAA
98247906 AAATTATAGAAATATATA
1 AAATT-TAGAAAT-TATA
98247924 TAAATTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
18 4 0.14
19 6 0.21
20 10 0.34
21 9 0.31
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (19 bp):
AAATTTAGAAATTATAAAA
Found at i:98247969 original size:20 final size:21
Alignment explanation
Indices: 98247929--98247971 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
98247919 ATATATAAAT
98247929 TTATAAAAATTCTTATGAAAAG
1 TTATAAAAA-TCTTATGAAAAG
*
98247951 TTATAAAAA-CTTATTAAAAG
1 TTATAAAAATCTTATGAAAAG
98247971 T
1 T
98247972 ACTTAAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
22 9 0.45
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (21 bp):
TTATAAAAATCTTATGAAAAG
Found at i:98248291 original size:11 final size:10
Alignment explanation
Indices: 98248261--98248315 Score: 60
Period size: 10 Copynumber: 5.6 Consensus size: 10
98248251 TATTAATTTT
98248261 TTAAAAATTA
1 TTAAAAATTA
98248271 TTAAAAATTA
1 TTAAAAATTA
98248281 TTAAAATATTA
1 TTAAAA-ATTA
*
98248292 -TAAAAGTTA
1 TTAAAAATTA
* *
98248301 -TATAAGTTA
1 TTAAAAATTA
98248310 TTAAAA
1 TTAAAA
98248316 TGATTATTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
9 11 0.28
10 25 0.62
11 4 0.10
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:98254346 original size:16 final size:18
Alignment explanation
Indices: 98254319--98254351 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
98254309 TGCGTTGATA
98254319 TCTTTATTATTT-TATTG
1 TCTTTATTATTTATATTG
98254336 TCTTT-TTATTTATATT
1 TCTTTATTATTTATATT
98254352 AATAACTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.73
Consensus pattern (18 bp):
TCTTTATTATTTATATTG
Found at i:98255291 original size:28 final size:28
Alignment explanation
Indices: 98255260--98255316 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
98255250 TTCACCAAGT
*
98255260 AAGAAAACATAGTCTTTTATTGAATACG
1 AAGAAAACATAGTCTTTTATTAAATACG
98255288 AAGAAAACATAGTCTTTTATTAAATACG
1 AAGAAAACATAGTCTTTTATTAAATACG
98255316 A
1 A
98255317 CTTATTTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.32
Consensus pattern (28 bp):
AAGAAAACATAGTCTTTTATTAAATACG
Found at i:98256144 original size:21 final size:21
Alignment explanation
Indices: 98256119--98256159 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
98256109 ATATAGGAAA
98256119 TTAAAAGAT-AAAATGTTTTTT
1 TTAAAAGATCAAAA-GTTTTTT
*
98256140 TTAAAGGATCAAAAGTTTTT
1 TTAAAAGATCAAAAGTTTTT
98256160 CGTATAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.44
Consensus pattern (21 bp):
TTAAAAGATCAAAAGTTTTTT
Found at i:98259949 original size:24 final size:24
Alignment explanation
Indices: 98259913--98259960 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
98259903 CTTTTAAAAA
* *
98259913 TTTTAAAATTTATATTTGCTTTTT
1 TTTTAAAACTTATATTTACTTTTT
*
98259937 TTTTATAACTTATATTTACTTTTT
1 TTTTAAAACTTATATTTACTTTTT
98259961 CTCATAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (24 bp):
TTTTAAAACTTATATTTACTTTTT
Found at i:98259967 original size:23 final size:24
Alignment explanation
Indices: 98259922--98259967 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
98259912 ATTTTAAAAT
* * *
98259922 TTATATTTGCTTTTTTTTTATAAC
1 TTATATTTACTTTTTTCTCATAAC
98259946 TTATATTTAC-TTTTTCTCATAA
1 TTATATTTACTTTTTTCTCATAA
98259968 ACAATGCTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.24, C:0.11, G:0.02, T:0.63
Consensus pattern (24 bp):
TTATATTTACTTTTTTCTCATAAC
Found at i:98260680 original size:3 final size:3
Alignment explanation
Indices: 98260672--98260701 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
98260662 ACTAAAACAA
98260672 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
98260702 TGAGTGGCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:98264192 original size:26 final size:26
Alignment explanation
Indices: 98264123--98264204 Score: 92
Period size: 26 Copynumber: 3.2 Consensus size: 26
98264113 CCCGTTATAT
* * *
98264123 GGCTCTTCGTGAGCTTCCCAATTAAA
1 GGCTATTCGTGAGCTTCTCGATTAAA
*
98264149 GACTATTCGTGAGCTTCTCGATTAAA
1 GGCTATTCGTGAGCTTCTCGATTAAA
* * * *
98264175 GGCTTTTTGTGAGCTTCTTGATTAAT
1 GGCTATTCGTGAGCTTCTCGATTAAA
98264201 GGCT
1 GGCT
98264205 CTCCAGAGCT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.38
Consensus pattern (26 bp):
GGCTATTCGTGAGCTTCTCGATTAAA
Found at i:98264264 original size:25 final size:23
Alignment explanation
Indices: 98264210--98264264 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 23
98264200 TGGCTCTCCA
* *
98264210 GAGCTTCCCGATATGGCTCGCTT
1 GAGCTTCCCGATATGGCTAGCTG
* *
98264233 GAACTTCCCGATACATGGCTATCTG
1 GAGCTTCCCGAT--ATGGCTAGCTG
98264258 GAGCTTC
1 GAGCTTC
98264265 ATGTTTAATG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
23 11 0.44
25 14 0.56
ACGTcount: A:0.18, C:0.29, G:0.24, T:0.29
Consensus pattern (23 bp):
GAGCTTCCCGATATGGCTAGCTG
Found at i:98272783 original size:46 final size:46
Alignment explanation
Indices: 98272716--98272891 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
98272706 TGTAACCCGC
*
98272716 CCATAAGTGAACTTGGACTCAACTCAAAGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGACGTTCGCAT
* *
98272762 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGA---C--GTTCGCAT
* * * * *
98272812 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGACGTTCGCAT
*
98272855 CCATAAGTGAACTCGGACTCAACTCAAAGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGA
98272892 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGACGTTCGCAT
Found at i:98272833 original size:93 final size:93
Alignment explanation
Indices: 98272724--98272895 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
98272714 GCCCATAAGT
* *
98272724 GAACTTGGACTCAACTCAAAGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
98272789 CGAGCTCGGATGCCTAGTTACATCTCAC
66 AGAGCTCGGATGCCTAGTTACATCTCAC
* *
98272817 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
98272882 AGAGTTCGGATGCC
66 AGAGCTCGGATGCC
98272896 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
AGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:98275365 original size:43 final size:43
Alignment explanation
Indices: 98275317--98275402 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
98275307 TTATGAAGAT
98275317 TGTCTTCCTAAGGTTTAGATTTTTCTTTGAAAGTTTCACTTTA
1 TGTCTTCCTAAGGTTTAGATTTTTCTTTGAAAGTTTCACTTTA
98275360 TGTCTTCCTAAGGTTTAGATTTTTCTTTGAAAGTTTCACTTTA
1 TGTCTTCCTAAGGTTTAGATTTTTCTTTGAAAGTTTCACTTTA
98275403 CCATTGCCTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.51
Consensus pattern (43 bp):
TGTCTTCCTAAGGTTTAGATTTTTCTTTGAAAGTTTCACTTTA
Found at i:98275386 original size:21 final size:21
Alignment explanation
Indices: 98275319--98275386 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
98275309 ATGAAGATTG
98275319 TCTTCCTAAGGTTTAGATTTT
1 TCTTCCTAAGGTTTAGATTTT
* *
98275340 TCTT--TGAAAGTTTCA-CTTTAT
1 TCTTCCT-AAGGTTT-AGATTT-T
98275361 GTCTTCCTAAGGTTTAGATTTT
1 -TCTTCCTAAGGTTTAGATTTT
98275383 TCTT
1 TCTT
98275387 TGAAAGTTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 1 0.03
20 9 0.25
21 10 0.28
22 6 0.17
23 9 0.25
24 1 0.03
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.53
Consensus pattern (21 bp):
TCTTCCTAAGGTTTAGATTTT
Found at i:98276453 original size:56 final size:56
Alignment explanation
Indices: 98276367--98276480 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
98276357 TTTTTACTTT
*
98276367 TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCATTTGTGTTTGA
1 TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCACTTGTGTTTGA
*
98276423 TGGTGGATAGAATTCCCTTAACTTTTCTCATAAATTGAGAATTCACTTGTGTTTGA
1 TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCACTTGTGTTTGA
98276479 TG
1 TG
98276481 ATATGAAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.41
Consensus pattern (56 bp):
TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCACTTGTGTTTGA
Found at i:98285344 original size:5 final size:5
Alignment explanation
Indices: 98285334--98285389 Score: 103
Period size: 5 Copynumber: 11.2 Consensus size: 5
98285324 CATTGCTCTC
*
98285334 TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAT TCTAG
1 TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG
98285384 TCTAG T
1 TCTAG T
98285390 GTGGGTCTGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 49 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.43
Consensus pattern (5 bp):
TCTAG
Found at i:98291717 original size:18 final size:18
Alignment explanation
Indices: 98291689--98291731 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
98291679 GCAAGACTAC
98291689 CAATCCTCTCTCTCTCTCT
1 CAAT-CTCTCTCTCTCTCT
* * *
98291708 CAATCTCTCTGTGTCTTT
1 CAATCTCTCTCTCTCTCT
98291726 CAATCT
1 CAATCT
98291732 AAGAAGTGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.14, C:0.37, G:0.05, T:0.44
Consensus pattern (18 bp):
CAATCTCTCTCTCTCTCT
Found at i:98294924 original size:53 final size:53
Alignment explanation
Indices: 98294744--98294995 Score: 257
Period size: 55 Copynumber: 4.8 Consensus size: 53
98294734 AGGGTTTAAA
*
98294744 GATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGCAAG
* * * *
98294799 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC-AAG
* * *
98294855 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAG
* * *
98294907 GATACTATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---AAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGCAAG
* * * *
98294956 GATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
98294996 GTACCCGCGT
Statistics
Matches: 169, Mismatches: 22, Indels: 18
0.81 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 8 0.05
53 43 0.25
54 8 0.05
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAG
Found at i:98294947 original size:108 final size:110
Alignment explanation
Indices: 98294748--98294948 Score: 320
Period size: 108 Copynumber: 1.8 Consensus size: 110
98294738 TTTAAAGATA
98294748 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
*
98294813 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
98294858 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATA-CTATGTAA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAATC-ATGTAA
*
98294919 GACCATGTCAAGACATGGCAATGGTAAGTT
64 GACCATGTCAAGACATGGCAATGATAAGTT
98294949 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
107 4 0.05
108 47 0.55
109 7 0.08
110 27 0.32
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:98295208 original size:16 final size:16
Alignment explanation
Indices: 98295187--98295217 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98295177 ATAAATTTGA
98295187 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
98295203 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
98295218 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:98310689 original size:21 final size:21
Alignment explanation
Indices: 98310665--98310707 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
98310655 TTTTAAGTTA
98310665 AAATGTATTTCCTTCCTAAAC
1 AAATGTATTTCCTTCCTAAAC
98310686 AAATGTATTTCCTTCCTAAAC
1 AAATGTATTTCCTTCCTAAAC
98310707 A
1 A
98310708 GTAGATCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.37
Consensus pattern (21 bp):
AAATGTATTTCCTTCCTAAAC
Found at i:98327891 original size:36 final size:36
Alignment explanation
Indices: 98327845--98327923 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
98327835 ACTTCACAAC
* *
98327845 TTAGCCGTTCCTTCTATTTCTTCTTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
*
98327881 TTAGCTGTTCCTTCTGTTTCTTCCTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
98327917 TTAGCTG
1 TTAGCTG
98327924 CTTCACAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.08, C:0.24, G:0.14, T:0.54
Consensus pattern (36 bp):
TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
Found at i:98327906 original size:13 final size:13
Alignment explanation
Indices: 98327888--98327913 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98327878 AGTTTAGCTG
98327888 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
98327901 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
98327914 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:98328878 original size:12 final size:12
Alignment explanation
Indices: 98328861--98328886 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
98328851 CAAAACAGGC
98328861 TTTTAGCGGCGT
1 TTTTAGCGGCGT
98328873 TTTTAGCGGCGT
1 TTTTAGCGGCGT
98328885 TT
1 TT
98328887 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:98329084 original size:148 final size:147
Alignment explanation
Indices: 98328892--98329361 Score: 798
Period size: 148 Copynumber: 3.2 Consensus size: 147
98328882 CGTTTGGATA
*
98328892 AAAAACGCCACTAAAAAATAAATCAATTTATAAAAAAAATAAAAAAATTTTAGAATAGCAAAACG
1 AAAAACGCCGC-AAAAAATAAATCAATTTATAAAAAAAATAAAAAAATTTTAGAATAGCAAAACG
98328957 GCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGC
65 GCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGC
98329022 AATAGCGGCGTTTTCTAT
130 AATAGCGGCGTTTTCTAT
*
98329040 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAAAT-AAAAAATTGTTAGAATAGCAAAACG
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATAAAAAAATT-TTAGAATAGCAAAACG
*
98329104 GCGTCGTTTTTTTCAAAATGAAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAG
65 GCGTCGTTTTGTTCAAAATG-AAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAG
*
98329169 CAATAGCGGCGTTTCCTAT
129 CAATAGCGGCGTTTTCTAT
*
98329188 ATAAACGCCGCAAAAAATAAATCAATTTAT-------A-AAAAAAA-TTTAGAATAGCAAAACGG
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATAAAAAAATTTTAGAATAGCAAAACGG
98329244 CGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCA
66 CGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCA
98329309 ATAGCGGCGTTTTCTAT
131 ATAGCGGCGTTTTCTAT
98329326 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAA
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAA
98329362 TTTCCCAAAT
Statistics
Matches: 304, Mismatches: 9, Indels: 22
0.91 0.03 0.07
Matches are distributed among these distances:
138 91 0.30
139 35 0.12
140 1 0.00
141 7 0.02
146 8 0.03
147 62 0.20
148 100 0.33
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (147 bp):
AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATAAAAAAATTTTAGAATAGCAAAACGG
CGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCA
ATAGCGGCGTTTTCTAT
Found at i:98329326 original size:138 final size:138
Alignment explanation
Indices: 98328930--98329361 Score: 729
Period size: 138 Copynumber: 3.1 Consensus size: 138
98328920 TATAAAAAAA
*
98328930 ATAAAAAAATTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCT
1 ATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCT
98328995 TTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAA
66 TTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAA
98329060 ATCAACTTAT
131 ATCAA-TT-T
* *
98329070 AAAAAAAATAAAAAATTGTTAGAATAGCAAAACGGCGTCGTTTTTTTCAAAATGAAAAAAATTTT
1 ----ATAA-AAAAAA-T-TTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATG-AAAAAATTTT
* *
98329135 GCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATATAAACGCCGCA
58 GCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCA
98329200 AAAAATAAATCAATTT
123 AAAAATAAATCAATTT
98329216 ATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCT
1 ATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCT
98329281 TTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAA
66 TTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAA
98329346 ATCAATTT
131 ATCAATTT
98329354 ATAAAAAA
1 ATAAAAAA
98329362 TTTCCCAAAT
Statistics
Matches: 275, Mismatches: 9, Indels: 14
0.92 0.03 0.05
Matches are distributed among these distances:
138 97 0.35
139 35 0.13
140 1 0.00
141 6 0.02
142 3 0.01
144 3 0.01
145 5 0.02
146 2 0.01
147 37 0.13
148 86 0.31
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.25
Consensus pattern (138 bp):
ATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCT
TTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAA
ATCAATTT
Found at i:98329956 original size:14 final size:15
Alignment explanation
Indices: 98329928--98329960 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
98329918 AAGTTTTATA
98329928 GATTATGGAATTAGG
1 GATTATGGAATTAGG
98329943 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
98329957 GATT
1 GATT
98329961 CTGATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:98330002 original size:14 final size:14
Alignment explanation
Indices: 98329983--98330049 Score: 66
Period size: 14 Copynumber: 4.9 Consensus size: 14
98329973 TTAATGTGAT
* *
98329983 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
98329997 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
98330011 TTAAGGGTTA--GG
1 TTAAGGGTTAGGGG
* **
98330023 TTAGGGGTTAGATG
1 TTAAGGGTTAGGGG
*
98330037 TTAAGAGTTAGGG
1 TTAAGGGTTAGGG
98330050 ATTTAGGGCT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
12 11 0.26
14 32 0.74
ACGTcount: A:0.24, C:0.00, G:0.42, T:0.34
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:98330030 original size:26 final size:26
Alignment explanation
Indices: 98329995--98330048 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
98329985 AAGGTTTATG
* *
98329995 GGTTAAGGGTTAGGGGTTAAGGGTTA
1 GGTTAAGGGTTAGAGGTTAAGAGTTA
* *
98330021 GGTTAGGGGTTAGATGTTAAGAGTTA
1 GGTTAAGGGTTAGAGGTTAAGAGTTA
98330047 GG
1 GG
98330049 GATTTAGGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.31
Consensus pattern (26 bp):
GGTTAAGGGTTAGAGGTTAAGAGTTA
Found at i:98330039 original size:19 final size:20
Alignment explanation
Indices: 98329994--98330032 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
98329984 TAAGGTTTAT
98329994 GGGTTAAGGGTTAGGGGTTAA
1 GGGTTAA-GGTTAGGGGTTAA
98330015 GGGTT-AGGTTAGGGGTTA
1 GGGTTAAGGTTAGGGGTTA
98330033 GATGTTAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 12 0.67
20 1 0.06
21 5 0.28
ACGTcount: A:0.21, C:0.00, G:0.49, T:0.31
Consensus pattern (20 bp):
GGGTTAAGGTTAGGGGTTAA
Found at i:98330336 original size:7 final size:7
Alignment explanation
Indices: 98330326--98330379 Score: 56
Period size: 7 Copynumber: 7.7 Consensus size: 7
98330316 GATTTAAGGT
98330326 TTAGGGG
1 TTAGGGG
*
98330333 TTAGTGG
1 TTAGGGG
98330340 TTA-GGG
1 TTAGGGG
98330346 TTAGGGG
1 TTAGGGG
* *
98330353 TTAAGAG
1 TTAGGGG
*
98330360 TTAGGGAT
1 TTAGGG-G
98330368 TTAGGGG
1 TTAGGGG
98330375 TTAGG
1 TTAGG
98330380 ACTTAAGGAT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
6 5 0.14
7 26 0.70
8 6 0.16
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:98330351 original size:20 final size:20
Alignment explanation
Indices: 98330326--98330378 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 20
98330316 GATTTAAGGT
*
98330326 TTAGGGGTTAGTGGTTAGGG-
1 TTAGGGGTTAG-AGTTAGGGA
98330346 TTAGGGGTTAAGAGTTAGGGA
1 TTAGGGGTT-AGAGTTAGGGA
98330367 TTTAGGGGTTAG
1 -TTAGGGGTTAG
98330379 GACTTAAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 16 0.55
21 4 0.14
22 9 0.31
ACGTcount: A:0.21, C:0.00, G:0.45, T:0.34
Consensus pattern (20 bp):
TTAGGGGTTAGAGTTAGGGA
Found at i:98330729 original size:19 final size:18
Alignment explanation
Indices: 98330700--98330753 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
98330690 GGACCAAATT
*
98330700 ATAAGAAATAAAATTAAA
1 ATAAAAAATAAAATTAAA
* *
98330718 ATACAAAAATAAAAATGAA
1 ATA-AAAAATAAAATTAAA
98330737 ATAAAAACACTAAAATT
1 ATAAAAA-A-TAAAATT
98330754 TTTAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 7 0.24
19 16 0.55
20 6 0.21
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (18 bp):
ATAAAAAATAAAATTAAA
Found at i:98330807 original size:47 final size:48
Alignment explanation
Indices: 98330738--98330836 Score: 182
Period size: 47 Copynumber: 2.1 Consensus size: 48
98330728 AAAAATGAAA
*
98330738 TAAAAACACTAAAATTTTTAATTTTATCTAATTTTTATAAATATTACT
1 TAAAAACACTAAAATTTATAATTTTATCTAATTTTTATAAATATTACT
98330786 TAAAAA-ACTAAAATTTATAATTTTATCTAATTTTTATAAATATTACT
1 TAAAAACACTAAAATTTATAATTTTATCTAATTTTTATAAATATTACT
98330833 TAAA
1 TAAA
98330837 CAAAACTATG
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 44 0.88
48 6 0.12
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (48 bp):
TAAAAACACTAAAATTTATAATTTTATCTAATTTTTATAAATATTACT
Found at i:98331177 original size:16 final size:15
Alignment explanation
Indices: 98331156--98331195 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
98331146 TGGTTGAAAT
98331156 ATTTATTCCCCTCCAA
1 ATTTATTCCCCTCC-A
*
98331172 ATTTATTCCCCTTCA
1 ATTTATTCCCCTCCA
98331187 ATTT-TTCCC
1 ATTTATTCCC
98331196 ATACCCGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.22
15 5 0.22
16 13 0.57
ACGTcount: A:0.20, C:0.35, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTTATTCCCCTCCA
Found at i:98335768 original size:43 final size:43
Alignment explanation
Indices: 98335563--98335771 Score: 310
Period size: 43 Copynumber: 4.9 Consensus size: 43
98335553 GCTTTTATCA
* * * *
98335563 AAAGCGTCGCTAAAGATCATGTTTTTTAGCGGCATTTGTGGTT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
* * **
98335606 AAAGCGTCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGTTT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
*
98335649 AAAGCGCCGCTAAAGATCATGTTCTTTAGCAGCGTTTGTGGGT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
*
98335692 AAGGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
* *
98335735 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTT
98335772 TGCCTCATAA
Statistics
Matches: 154, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 154 1.00
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT
Found at i:98341224 original size:120 final size:120
Alignment explanation
Indices: 98341027--98341649 Score: 1219
Period size: 120 Copynumber: 5.2 Consensus size: 120
98341017 TTTTCAAGTT
*
98341027 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
98341092 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
*
98341147 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
98341212 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
98341267 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
98341332 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
98341387 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
98341452 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
98341507 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
98341572 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
98341627 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
98341650 TAAATATGAT
Statistics
Matches: 501, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 501 1.00
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
Found at i:98341266 original size:18 final size:17
Alignment explanation
Indices: 98341238--98341272 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98341228 ATTATTAAGA
*
98341238 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
98341255 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
98341273 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:98341386 original size:18 final size:17
Alignment explanation
Indices: 98341358--98341392 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98341348 ATTATTAAGA
*
98341358 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
98341375 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
98341393 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:98341506 original size:18 final size:17
Alignment explanation
Indices: 98341478--98341512 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98341468 ATTATTAAGA
*
98341478 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
98341495 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
98341513 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:98341626 original size:18 final size:17
Alignment explanation
Indices: 98341598--98341632 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98341588 ATTATTAAGA
*
98341598 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
98341615 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
98341633 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:98341902 original size:16 final size:16
Alignment explanation
Indices: 98341868--98341920 Score: 88
Period size: 16 Copynumber: 3.2 Consensus size: 16
98341858 GATTAGCTAT
98341868 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
98341885 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
98341901 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
98341917 TACA
1 TACA
98341921 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
16 22 0.65
17 12 0.35
ACGTcount: A:0.36, C:0.38, G:0.02, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:98343669 original size:24 final size:25
Alignment explanation
Indices: 98343633--98343681 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
98343623 TTCTGAAGGG
*
98343633 TTAAAAAATTCATT-AAAACTTTTT
1 TTAAAAAAGTCATTCAAAACTTTTT
*
98343657 TTAAAAAAGTCATTCAAATCTTTTT
1 TTAAAAAAGTCATTCAAAACTTTTT
98343682 ACGGAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (25 bp):
TTAAAAAAGTCATTCAAAACTTTTT
Done.