Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 298 of 333
Found at i:98344142 original size:13 final size:13
Alignment explanation
Indices: 98344120--98344157 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
98344110 TAAGGATATC
*
98344120 AATTTCTATAAAT
1 AATTTTTATAAAT
98344133 AATTTTTAT-AAT
1 AATTTTTATAAAT
98344145 AATTCTTTATAAA
1 AATT-TTTATAAA
98344158 ACAATCTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 7 0.32
13 13 0.59
14 2 0.09
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (13 bp):
AATTTTTATAAAT
Found at i:98349237 original size:107 final size:107
Alignment explanation
Indices: 98349051--98349267 Score: 434
Period size: 107 Copynumber: 2.0 Consensus size: 107
98349041 TTCTAATCTC
98349051 TAATGGGTGTATTTTCTAAGGTTGTAAAAGAGCCTATTTATAGGCTAAATTCATAGATCAAATAA
1 TAATGGGTGTATTTTCTAAGGTTGTAAAAGAGCCTATTTATAGGCTAAATTCATAGATCAAATAA
98349116 TAATAAAATAATCTAAACTAATCAGTGTTTGATTGAAACAAG
66 TAATAAAATAATCTAAACTAATCAGTGTTTGATTGAAACAAG
98349158 TAATGGGTGTATTTTCTAAGGTTGTAAAAGAGCCTATTTATAGGCTAAATTCATAGATCAAATAA
1 TAATGGGTGTATTTTCTAAGGTTGTAAAAGAGCCTATTTATAGGCTAAATTCATAGATCAAATAA
98349223 TAATAAAATAATCTAAACTAATCAGTGTTTGATTGAAACAAG
66 TAATAAAATAATCTAAACTAATCAGTGTTTGATTGAAACAAG
98349265 TAA
1 TAA
98349268 ACAGAGTTTA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 110 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (107 bp):
TAATGGGTGTATTTTCTAAGGTTGTAAAAGAGCCTATTTATAGGCTAAATTCATAGATCAAATAA
TAATAAAATAATCTAAACTAATCAGTGTTTGATTGAAACAAG
Found at i:98353070 original size:21 final size:21
Alignment explanation
Indices: 98353044--98353084 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
98353034 ACTCAGAATA
98353044 TTTTTATTTTTAAAAATTTAT
1 TTTTTATTTTTAAAAATTTAT
*
98353065 TTTTTATTTTTAAAATTTTA
1 TTTTTATTTTTAAAAATTTA
98353085 AATTCAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTTATTTTTAAAAATTTAT
Found at i:98354924 original size:61 final size:61
Alignment explanation
Indices: 98354849--98354973 Score: 198
Period size: 61 Copynumber: 2.0 Consensus size: 61
98354839 AAATAAATAT
*
98354849 TATTTTAAGAATATTTTTATATTTTTATATAAAAAATTTTAAAAAATATGATTCGATAGGA
1 TATTTTAAGAATATTTTTATATTTCTATATAAAAAATTTTAAAAAATATGATTCGATAGGA
* * *
98354910 TATTTTGAAG-ATATTTTTGTATTTCTATATAAAAAATTTTAAAAAATATGATTTGATCGGA
1 TATTTT-AAGAATATTTTTATATTTCTATATAAAAAATTTTAAAAAATATGATTCGATAGGA
98354971 TAT
1 TAT
98354974 GAACTCAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
61 56 0.95
62 3 0.05
ACGTcount: A:0.42, C:0.02, G:0.10, T:0.46
Consensus pattern (61 bp):
TATTTTAAGAATATTTTTATATTTCTATATAAAAAATTTTAAAAAATATGATTCGATAGGA
Found at i:98355770 original size:7 final size:7
Alignment explanation
Indices: 98355758--98355785 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
98355748 GAAAATTTAT
98355758 TTTAATA
1 TTTAATA
98355765 TTTAATA
1 TTTAATA
98355772 TTTAATA
1 TTTAATA
98355779 TTTAATA
1 TTTAATA
98355786 AAATGTAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTAATA
Found at i:98365192 original size:15 final size:15
Alignment explanation
Indices: 98365172--98365202 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
98365162 AAGTTCGATC
98365172 TTTAGATATTTTATT
1 TTTAGATATTTTATT
*
98365187 TTTAGATGTTTTATT
1 TTTAGATATTTTATT
98365202 T
1 T
98365203 AAACATTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.68
Consensus pattern (15 bp):
TTTAGATATTTTATT
Found at i:98367359 original size:32 final size:32
Alignment explanation
Indices: 98367323--98367385 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
98367313 AACTGAAGTG
98367323 GTGTTTCTTAACAAGTTGAGCCTGTATGAGTA
1 GTGTTTCTTAACAAGTTGAGCCTGTATGAGTA
**
98367355 GTGTTTCTTAATGAGTTGAGCCTGTATGAGT
1 GTGTTTCTTAACAAGTTGAGCCTGTATGAGT
98367386 GACCCAGCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.22, C:0.11, G:0.27, T:0.40
Consensus pattern (32 bp):
GTGTTTCTTAACAAGTTGAGCCTGTATGAGTA
Found at i:98374930 original size:31 final size:28
Alignment explanation
Indices: 98374895--98374958 Score: 67
Period size: 31 Copynumber: 2.2 Consensus size: 28
98374885 TTAATATATA
98374895 TATATGCAT-ATTTAGTTATGGATTTAATTTT
1 TATAT-CATAATTTAGTTAT---TTTAATTTT
**
98374926 TATATTTTAATTTAGTTATTTTAATTTT
1 TATATCATAATTTAGTTATTTTAATTTT
98374954 TATAT
1 TATAT
98374959 TTTTTAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 14 0.47
30 1 0.03
31 15 0.50
ACGTcount: A:0.30, C:0.02, G:0.08, T:0.61
Consensus pattern (28 bp):
TATATCATAATTTAGTTATTTTAATTTT
Found at i:98374936 original size:14 final size:14
Alignment explanation
Indices: 98374917--98374961 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
98374907 TAGTTATGGA
98374917 TTTAATTTTTATAT
1 TTTAATTTTTATAT
*
98374931 TTTAATTTAGT-TAT
1 TTTAATTT-TTATAT
98374945 TTTAATTTTTATAT
1 TTTAATTTTTATAT
98374959 TTT
1 TTT
98374962 TTAAATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTAATTTTTATAT
Found at i:98375412 original size:15 final size:15
Alignment explanation
Indices: 98375392--98375427 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
98375382 TTCATAAAAA
98375392 CTGAAATTTCAAATT
1 CTGAAATTTCAAATT
98375407 CTGAAATTTCAAATT
1 CTGAAATTTCAAATT
*
98375422 TTGAAA
1 CTGAAA
98375428 AGTATAGGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (15 bp):
CTGAAATTTCAAATT
Found at i:98380637 original size:28 final size:28
Alignment explanation
Indices: 98380596--98380674 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
98380586 GCAATCAAAT
* * * *
98380596 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTAAGA
*
98380624 ATGGCACTTAGTGTGCGAGATATTAAGA
1 ATGGCACTTAGTGTGCGAAATATTAAGA
* *
98380652 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
98380675 CGAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTAAGA
Found at i:98388775 original size:21 final size:21
Alignment explanation
Indices: 98388751--98388815 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
98388741 AAGTCTAGCT
98388751 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
** *
98388772 GAAGC-CCGAA-TGCT-AACT
1 GAAGCACATAAGTGCTAAACG
98388790 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
98388811 GAAGC
1 GAAGC
98388816 CCGAAGGCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.23
19 7 0.20
20 7 0.20
21 13 0.37
ACGTcount: A:0.40, C:0.22, G:0.25, T:0.14
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:98388787 original size:19 final size:19
Alignment explanation
Indices: 98388763--98388826 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
98388753 AGCACATAAG
98388763 TGCTAAACGGAAGCCCGAA
1 TGCTAAACGGAAGCCCGAA
* **
98388782 TGCT-AACTGAAGCACATAA
1 TGCTAAACGGAAGC-CCGAA
98388801 GTGCTAAACGGAAGCCCGAA
1 -TGCTAAACGGAAGCCCGAA
*
98388821 GGCTAA
1 TGCTAA
98388827 CTGAAGCTCA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 8 0.23
19 12 0.34
20 7 0.20
21 8 0.23
ACGTcount: A:0.38, C:0.23, G:0.25, T:0.14
Consensus pattern (19 bp):
TGCTAAACGGAAGCCCGAA
Found at i:98388792 original size:39 final size:39
Alignment explanation
Indices: 98388733--98388862 Score: 172
Period size: 39 Copynumber: 3.3 Consensus size: 39
98388723 ATCGTGATCT
*
98388733 GAAGCCCGAA-GTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAATG-CTAACTGAAGCACATAAGTGCTAAACG
98388772 GAAGCCCGAATGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAATGCTAACTGAAGCACATAAGTGCTAAACG
* * * *
98388811 GAAGCCCGAAGGCTAACTGAAGCTCATCAGAGCTAAACTG
1 GAAGCCCGAATGCTAACTGAAGCACATAAGTGCTAAAC-G
* *
98388851 AAACCCCGAATG
1 GAAGCCCGAATG
98388863 GGTTGACTGA
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 70 0.86
40 11 0.14
ACGTcount: A:0.37, C:0.25, G:0.24, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAATGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:98393870 original size:29 final size:30
Alignment explanation
Indices: 98393811--98393868 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
98393801 TCCGAGCCTT
*
98393811 GGGGAAAAAATGTAATTATGTAAAAGTTTA
1 GGGGAAAAAATGTAATTATGAAAAAGTTTA
* * *
98393841 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGAAAAAATGTAATTATGAAAAAGTT
98393869 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGAAAAAATGTAATTATGAAAAAGTTTA
Found at i:98394098 original size:13 final size:13
Alignment explanation
Indices: 98394080--98394111 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
98394070 TTTCCAGCAA
98394080 TTATGAATTTATT
1 TTATGAATTTATT
98394093 TTATGAATTTATT
1 TTATGAATTTATT
*
98394106 TGATGA
1 TTATGA
98394112 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:98394319 original size:50 final size:50
Alignment explanation
Indices: 98394206--98394447 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
98394196 ATTTGGGTAA
* * *
98394206 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
98394262 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
98394312 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * * *
98394362 AGAAGTCCCCTATAAGACCATGTCTAGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
98394412 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
98394448 TTTGGCATGT
Statistics
Matches: 163, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 89 0.55
51 28 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.24
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:98394397 original size:100 final size:103
Alignment explanation
Indices: 98394206--98394455 Score: 346
Period size: 100 Copynumber: 2.4 Consensus size: 103
98394196 ATTTGGGTAA
*
98394206 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAAGTCCC
* * *
98394271 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTAGGACATGGCATGGGCACC-ATCACG
* * *
98394312 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAAGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAAGTCCCCTA
98394374 TAAGACCATGTCTAGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTAGGACATGGCATGGGCACCATCACG
* *
98394412 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
98394456 GTTATTATCA
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.37
101 39 0.30
105 2 0.02
106 40 0.31
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAAGTCCCCTA
TAAGACCATGTCTAGGACATGGCATGGGCACCATCACG
Found at i:98405320 original size:28 final size:28
Alignment explanation
Indices: 98405288--98405345 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
98405278 CTTTTAATAT
*
98405288 CAAATACATGTTATCCTAATTTATCTAA
1 CAAATACATGTTATCCCAATTTATCTAA
98405316 CAAATACATGTTATCCCAATTTATCTAA
1 CAAATACATGTTATCCCAATTTATCTAA
98405344 CA
1 CA
98405346 TCCACCGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.21, G:0.03, T:0.36
Consensus pattern (28 bp):
CAAATACATGTTATCCCAATTTATCTAA
Found at i:98410355 original size:12 final size:12
Alignment explanation
Indices: 98410338--98410371 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
98410328 CTTATGACAC
* *
98410338 AAAAAAGAAGTA
1 AAAAAAAAAGCA
98410350 AAAAAAAAAGCA
1 AAAAAAAAAGCA
98410362 AAAAAAAAAG
1 AAAAAAAAAG
98410372 AAGAGAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (12 bp):
AAAAAAAAAGCA
Found at i:98410460 original size:187 final size:186
Alignment explanation
Indices: 98410073--98410627 Score: 999
Period size: 187 Copynumber: 3.0 Consensus size: 186
98410063 AAAAAATGTA
*
98410073 TATTGAAGTTGACCCATTCTTTGCTCTTTTTGAAGCATCAACAATTCGTTCTATTAAAGTGTGGT
1 TATTGAAGTTGACCCATTCTTTGCTTTTTTTGAAGCATCAACAATTCGTTCTATTAAAGTGTGGT
* * *
98410138 ACTTAGGACACAAAAAAGAAGTAAAATAAAAGCACAAAAAAAAAAAGAAAAGAAAATTTATCTAA
66 ACTTATGACACAAAAAAGAAGTAAAAAAAAAG--C-AAAAAAAAAAGAAGAGAAAATTTATCTAA
*
98410203 TTATAGTCCAAGAATTAATTTTGCATTCACATCTATCCCTCTTGTCCTTATGTTTTTAC
128 TTATAGTCCAAGAATTAATTTTGCATTCACATCTATCCCTCTTGTCCTTATGTTTCTAC
98410262 TATTGAAGTTGACCCATTCTTTGCTTTTTTTGAAGCATCAACAATTCGTTCTATTAAAGTGTGGT
1 TATTGAAGTTGACCCATTCTTTGCTTTTTTTGAAGCATCAACAATTCGTTCTATTAAAGTGTGGT
98410327 ACTTATGACACAAAAAAGAAGTAAAAAAAAAAGCAAAAAAAAAAGAAGAGAAAATTTATCTAATT
66 ACTTATGACACAAAAAAGAAGT-AAAAAAAAAGCAAAAAAAAAAGAAGAGAAAATTTATCTAATT
98410392 ATAGTCCAAGAATTAATTTTGCATTCACATCTATCCCTCTTGTCCTTATGTTTCTAC
130 ATAGTCCAAGAATTAATTTTGCATTCACATCTATCCCTCTTGTCCTTATGTTTCTAC
98410449 TATTGAAGTTGACCCATTCTTTGCTTTTTTTGAAGCATCAACAATTCGTTCTATTAAAGTGTGGT
1 TATTGAAGTTGACCCATTCTTTGCTTTTTTTGAAGCATCAACAATTCGTTCTATTAAAGTGTGGT
98410514 ACTTATGACACAAAAAAGAAGTAAAAAAAAAGC--AAAAAAAA-AAGAGAAAATTTATCTAATTA
66 ACTTATGACACAAAAAAGAAGTAAAAAAAAAGCAAAAAAAAAAGAAGAGAAAATTTATCTAATTA
*
98410576 TAGTCCAAGAATTAATTTTGCATTCACATCTATCCTTCTTGTCCTTATGTTT
131 TAGTCCAAGAATTAATTTTGCATTCACATCTATCCCTCTTGTCCTTATGTTT
98410628 TTACAAATAA
Statistics
Matches: 359, Mismatches: 6, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
183 72 0.20
184 8 0.02
186 11 0.03
187 173 0.48
188 1 0.00
189 85 0.24
190 9 0.03
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (186 bp):
TATTGAAGTTGACCCATTCTTTGCTTTTTTTGAAGCATCAACAATTCGTTCTATTAAAGTGTGGT
ACTTATGACACAAAAAAGAAGTAAAAAAAAAGCAAAAAAAAAAGAAGAGAAAATTTATCTAATTA
TAGTCCAAGAATTAATTTTGCATTCACATCTATCCCTCTTGTCCTTATGTTTCTAC
Found at i:98411224 original size:39 final size:39
Alignment explanation
Indices: 98411164--98411241 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
98411154 TTGTATCGAA
* *
98411164 AACCAATGGGCTTATCAATTTAACTGCTGGTCTGGTTAT
1 AACCAATGGGCTGATCAATTTAACTGCTGGTCAGGTTAT
* *
98411203 AACCAATGGGCTGATCGATTTAACTGTTGGTCAGGTTAT
1 AACCAATGGGCTGATCAATTTAACTGCTGGTCAGGTTAT
98411242 TTGAATATTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.35
Consensus pattern (39 bp):
AACCAATGGGCTGATCAATTTAACTGCTGGTCAGGTTAT
Found at i:98411707 original size:36 final size:37
Alignment explanation
Indices: 98411643--98411716 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 37
98411633 CTATTTTACT
98411643 AATTAAAATAATAAATAATATTTATA-TTTATAAATA
1 AATTAAAATAATAAATAATATTTATATTTTATAAATA
* * * *
98411679 AATTTAAATAA-AAATATTTTTTATTATTTTTTAAATA
1 AATTAAAATAATAAATAATATTTA-TATTTTATAAATA
98411716 A
1 A
98411717 CTTTTTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
35 10 0.31
36 12 0.38
37 10 0.31
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (37 bp):
AATTAAAATAATAAATAATATTTATATTTTATAAATA
Found at i:98414830 original size:267 final size:266
Alignment explanation
Indices: 98414340--98414872 Score: 1005
Period size: 266 Copynumber: 2.0 Consensus size: 266
98414330 AAAATTAGGG
98414340 AAAAAAGCCGAACTCTTTTTTTTTTTGCAAAGTAGGCTTTTATTTTTCATATTTAGAGAAATAAG
1 AAAAAAGCCGAACTCTTTTTTTTTTTGCAAAGTAGGCTTTTATTTTTCATATTTAGAGAAATAAG
98414405 TCGATTTTAAAGACAACTGAAGTGTCAGAAAACACTTCCTATAAAATGAATTTTTTAATACATTA
66 TCGATTTTAAAGACAACTGAAGTGTCAGAAAACACTTCCTATAAAATGAATTTTTTAATACATTA
98414470 ATTTTTTTTGGTTAAATGGTGAAATGTTAATAATTTTAACCTTAAGTCTCGGGTTTGATTCTTCT
131 ATTTTTTTTGGTTAAATGGTGAAATGTTAATAATTTTAACCTTAAGTCTCGGGTTTGATTCTTCT
* *
98414535 CCTACTCATATTTGTATTTTTTATTTCATGTTGTTTTAATC-TTTTTTAAAATTTTTAATTAATA
196 CCTACTCATATTTCTATTTTTTATTTCATGTTATTTTAATCTTTTTTTAAAA-TTTTAATTAATA
98414599 AATATAT
260 AATATAT
*
98414606 AAAAAAGCTGAACTCTTTTTTTTTTTGCAAAGTAGGCTTTTATTTTTCATATTTAGAGAAATAAG
1 AAAAAAGCCGAACTCTTTTTTTTTTTGCAAAGTAGGCTTTTATTTTTCATATTTAGAGAAATAAG
*
98414671 TCGATTTTAAAGACAACTGAAGTGTCAGAAAACACTTCCTATAAAATGGATTTTTTAATACATTA
66 TCGATTTTAAAGACAACTGAAGTGTCAGAAAACACTTCCTATAAAATGAATTTTTTAATACATTA
98414736 ATTTTTTTTTGGTTAAATGGTGAAATGTTAATAATTTTAACCTTAAGTCTCGGGTTTGATTCTTC
131 A-TTTTTTTTGGTTAAATGGTGAAATGTTAATAATTTTAACCTTAAGTCTCGGGTTTGATTCTTC
98414801 TCCTACTCATATTTCTATTTTTTATTTCATGTTATTTTAATCTTTTTTTAAAATTTTAATTAATA
195 TCCTACTCATATTTCTATTTTTTATTTCATGTTATTTTAATCTTTTTTTAAAATTTTAATTAATA
98414866 AATATAT
260 AATATAT
98414873 TGCTTTCAAG
Statistics
Matches: 261, Mismatches: 4, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
266 129 0.49
267 122 0.47
268 10 0.04
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (266 bp):
AAAAAAGCCGAACTCTTTTTTTTTTTGCAAAGTAGGCTTTTATTTTTCATATTTAGAGAAATAAG
TCGATTTTAAAGACAACTGAAGTGTCAGAAAACACTTCCTATAAAATGAATTTTTTAATACATTA
ATTTTTTTTGGTTAAATGGTGAAATGTTAATAATTTTAACCTTAAGTCTCGGGTTTGATTCTTCT
CCTACTCATATTTCTATTTTTTATTTCATGTTATTTTAATCTTTTTTTAAAATTTTAATTAATAA
ATATAT
Found at i:98414975 original size:21 final size:19
Alignment explanation
Indices: 98414933--98414973 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
98414923 TATAAATAAA
* *
98414933 ATAATAAATATGTAATTAT
1 ATAATAAAAATATAATTAT
*
98414952 ATAATAAAAATATAACTAT
1 ATAATAAAAATATAATTAT
98414971 ATA
1 ATA
98414974 TATTATTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
ATAATAAAAATATAATTAT
Found at i:98414978 original size:28 final size:28
Alignment explanation
Indices: 98414920--98414979 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 28
98414910 ACGCTTTTAT
*
98414920 TTATATAAATAAAATAATAAATATGTAA
1 TTATATAAATAAAATAATAAATATATAA
*
98414948 TTATAT-AATAAAA-ATATAACTATATATA
1 TTATATAAATAAAATA-ATAAATATATA-A
98414976 TTAT
1 TTAT
98414980 TATGTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 1 0.04
27 16 0.57
28 11 0.39
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (28 bp):
TTATATAAATAAAATAATAAATATATAA
Found at i:98419842 original size:43 final size:43
Alignment explanation
Indices: 98419777--98419943 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 43
98419767 AGCTTGTACA
* * *
98419777 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGATATGGTCTTACACGTAATCACATATCG
* * * * *
98419819 ATGCCACTGTCCCAGATAGGGTCTTACACGAAATCGA-TTAACG
1 ATGCCAATGTCCCAGATATGGTCTTACACGTAATC-ACATATCG
* * * **
98419862 ATGCCAATGTCTCAGACATGGTCTTACACGTAATCTCA-ATAAA
1 ATGCCAATGTCCCAGATATGGTCTTACACGTAATCACATAT-CG
* *
98419905 ATGTCAATGTCCCAGATATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGATATGGTCTTACACGTAATCACAT
98419944 CTTGATAACC
Statistics
Matches: 97, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
42 6 0.06
43 90 0.93
44 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGATATGGTCTTACACGTAATCACATATCG
Found at i:98424334 original size:24 final size:24
Alignment explanation
Indices: 98424307--98424358 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
98424297 TTAGTAAGTC
*
98424307 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
98424331 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
98424355 AAAT
1 AAAT
98424359 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:98426434 original size:556 final size:556
Alignment explanation
Indices: 98425382--98426450 Score: 2075
Period size: 556 Copynumber: 1.9 Consensus size: 556
98425372 CTCTACTCAA
98425382 CAAATGACCCTTCACATCTTCGAACAAGAGTTTGTCTCTGCCATAAATCAGGGTTTCCCTGAAAG
1 CAAATGACCCTTCACATCTTCGAACAAGAGTTTGTCTCTGCCATAAATCAGGGTTTCCCTGAAAG
*
98425447 ACTTGTATGAAGAGGGTAAAGAGCATAATAACAGCATAGCTTGATCTTCATCGTCAATATGAACC
66 ACTTGTATGAAGAGGGTAAAGAGCATAATAACAACATAGCTTGATCTTCATCGTCAATATGAACC
98425512 TCAACGTTCTTTAAATCATTTAAAAGAGTGATGAATTGACTGATGTGATCTTTAAGAAGCTCACC
131 TCAACGTTCTTTAAATCATTTAAAAGAGTGATGAATTGACTGATGTGATCTTTAAGAAGCTCACC
98425577 TTCGTTCATGCGAAACGTAAATAGACGTTGTTTCAACACTAAACGGTTAGCCAGAGACTTAGTCG
196 TTCGTTCATGCGAAACGTAAATAGACGTTGTTTCAACACTAAACGGTTAGCCAGAGACTTAGTCG
98425642 CATAAAGAGTTTCTAACCTTTTCCACAAGGCGAATGAGGTCTTCTCCATCAATACCTCCTGCAAT
261 CATAAAGAGTTTCTAACCTTTTCCACAAGGCGAATGAGGTCTTCTCCATCAATACCTCCTGCAAT
*
98425707 ACTGTATTCGCGAGGCACAACTGGATTGCAGACAAGGCCTTTTCATCAAGCTCTTCCCATTCTGT
326 ACTGTATTCGCGAGGCACAACTGGATTACAGACAAGGCCTTTTCATCAAGCTCTTCCCATTCTGT
*
98425772 TTGATTTAGATTCTCAGGCTTTTTCCCTGTAACAACCTTTTTTAAGCCATTTTGAACTAGAATTG
391 TTGATTTAGATTCTCAGGCTTTTTCCCTGTAACAACCTTTTTCAAGCCATTTTGAACTAGAATTG
*
98425837 CCATCATCCGAACTTGCCACAGATTGAAATTTGTCTCACCATCGAACTTCTCAATTTCTTCTACT
456 CCATCATCCGAACTTGCCACAGATTGAAATTTGTCTCACCATCAAACTTCTCAATTTCTTCTACT
98425902 ATTTTTACTTGTTCGTTGCTTAATCGGGACGAATAG
521 ATTTTTACTTGTTCGTTGCTTAATCGGGACGAATAG
*
98425938 CAAATGACCCTTCACATCTTCGAACAAGAGTTTGTCTCTGCCATAAATCAGGGTTTCTCTGAAAG
1 CAAATGACCCTTCACATCTTCGAACAAGAGTTTGTCTCTGCCATAAATCAGGGTTTCCCTGAAAG
98426003 ACTTGTATGAAGAGGGTAAAGAGCATAATAACAACATAGCTTGATCTTCATCGTCAATATGAACC
66 ACTTGTATGAAGAGGGTAAAGAGCATAATAACAACATAGCTTGATCTTCATCGTCAATATGAACC
98426068 TCAACGTTCTTTAAATCATTTAAAAGAGTGATGAATTGACTGATGTGATCTTTAAGAAGCTCACC
131 TCAACGTTCTTTAAATCATTTAAAAGAGTGATGAATTGACTGATGTGATCTTTAAGAAGCTCACC
98426133 TTCGTTCATGCGAAACGTAAATAGACGTTGTTTCAACACTAAACGGTTAGCCAGAGACTTAGTCG
196 TTCGTTCATGCGAAACGTAAATAGACGTTGTTTCAACACTAAACGGTTAGCCAGAGACTTAGTCG
*
98426198 CATAAAGAGTTTCTAACCTTTTCCACAAGGCGAATGAGGTCTTCTTCATCAATACCTCCTGCAAT
261 CATAAAGAGTTTCTAACCTTTTCCACAAGGCGAATGAGGTCTTCTCCATCAATACCTCCTGCAAT
*
98426263 ACTGTATTTGCGAGGCACAACTGGATTACAGACAAGGCCTTTTCATCAAGCTCTTCCCATTCTGT
326 ACTGTATTCGCGAGGCACAACTGGATTACAGACAAGGCCTTTTCATCAAGCTCTTCCCATTCTGT
98426328 TTGATTTAGATTCTCAGGCTTTTTCCCTGTAACAACCTTTTTCAAGCCATTTTGAACTAGAATTG
391 TTGATTTAGATTCTCAGGCTTTTTCCCTGTAACAACCTTTTTCAAGCCATTTTGAACTAGAATTG
98426393 CCATCATCCGAACTTGCCACAGATTGAAATTTGTCTCACCATCAAACTTCTCAATTTC
456 CCATCATCCGAACTTGCCACAGATTGAAATTTGTCTCACCATCAAACTTCTCAATTTC
98426451 AAACCTTGTT
Statistics
Matches: 506, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
556 506 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (556 bp):
CAAATGACCCTTCACATCTTCGAACAAGAGTTTGTCTCTGCCATAAATCAGGGTTTCCCTGAAAG
ACTTGTATGAAGAGGGTAAAGAGCATAATAACAACATAGCTTGATCTTCATCGTCAATATGAACC
TCAACGTTCTTTAAATCATTTAAAAGAGTGATGAATTGACTGATGTGATCTTTAAGAAGCTCACC
TTCGTTCATGCGAAACGTAAATAGACGTTGTTTCAACACTAAACGGTTAGCCAGAGACTTAGTCG
CATAAAGAGTTTCTAACCTTTTCCACAAGGCGAATGAGGTCTTCTCCATCAATACCTCCTGCAAT
ACTGTATTCGCGAGGCACAACTGGATTACAGACAAGGCCTTTTCATCAAGCTCTTCCCATTCTGT
TTGATTTAGATTCTCAGGCTTTTTCCCTGTAACAACCTTTTTCAAGCCATTTTGAACTAGAATTG
CCATCATCCGAACTTGCCACAGATTGAAATTTGTCTCACCATCAAACTTCTCAATTTCTTCTACT
ATTTTTACTTGTTCGTTGCTTAATCGGGACGAATAG
Found at i:98426860 original size:24 final size:24
Alignment explanation
Indices: 98426833--98426884 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
98426823 TTAGTAAGTC
*
98426833 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
98426857 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
98426881 AAAT
1 AAAT
98426885 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:98439664 original size:10 final size:10
Alignment explanation
Indices: 98439646--98439702 Score: 62
Period size: 10 Copynumber: 5.7 Consensus size: 10
98439636 TCTATTGCAA
98439646 AAAAAAAAAG
1 AAAAAAAAAG
98439656 AAAAGAAAAAG
1 AAAA-AAAAAG
* *
98439667 AGAAAAAAAT
1 AAAAAAAAAG
* *
98439677 ATAAAAATA-
1 AAAAAAAAAG
98439686 AAAAAAAAAG
1 AAAAAAAAAG
98439696 AAAAAAA
1 AAAAAAA
98439703 GAAAAATGGA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
9 7 0.18
10 23 0.59
11 9 0.23
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.05
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:98441023 original size:205 final size:205
Alignment explanation
Indices: 98440650--98441811 Score: 1915
Period size: 205 Copynumber: 5.7 Consensus size: 205
98440640 GCAGATCTGG
**
98440650 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGGAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * *
98440715 GATTTGGTTTTCACGTGCTTATGTTGAAGCAAATCTAA-ATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
98440779 AGAACAAATCGAAGTTTGACATCTTCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
130 AGAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
* *
98440844 AGTTATTTATA
195 AGATGTTTATA
* * *
98440855 CTGAAGCAGATCCAAGATAGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGCAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
98440920 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * *
98440985 GAACAAATCAAAGTCTAGTATCTCCATTTCGACGGAGAGCAGATACAAAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
98441050 GATGTTTATA
196 GATGTTTATA
* *
98441060 GTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGTTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
98441125 ATTTGGC-TTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGACATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
98441189 GAACAAATTGAAGTCTGGCATCTCCATTTCGACGGAGAGTAGATACATAGCAAATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
98441254 GATGTTTATA
196 GATGTTTATA
*
98441264 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGTTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
98441329 ATTTGGCTTTCACGTGCTTACAATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTATCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
98441394 GAACAAATTGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
98441459 GATGTTTATA
196 GATGTTTATA
98441469 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
*
98441534 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAAATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
98441599 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
98441664 GATG-----A
196 GATGTTTATA
*
98441669 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * * *
98441734 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAAA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
98441799 GAACAAATCGAAG
131 GAACAAATCGAAG
98441812 AAACAGATTT
Statistics
Matches: 900, Mismatches: 55, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
200 137 0.15
204 280 0.31
205 483 0.54
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
GATGTTTATA
Found at i:98441419 original size:409 final size:408
Alignment explanation
Indices: 98440650--98441811 Score: 1911
Period size: 409 Copynumber: 2.8 Consensus size: 408
98440640 GCAGATCTGG
**
98440650 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGGAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * *
98440715 GATTTGGTTTTCACGTGCTTATGTTGAAGCAAATCTAAATGATTTGGCATCTCTGTATTGTCAGA
65 GATTTGG-CTTCACGTGCTTACGATGAAGCAAATCTAAATGATTTGGCATCTCTGTATTGTCAGA
* * *
98440780 GAACAAATCGAAGTTTGACATCTTCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
129 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
* * * * *
98440845 GTTATTTATACTGAAGCAGATCCAAGATAGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGCA
194 GATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA
*
98440910 GACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTG
259 GACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTG
* * *
98440975 TATTGTCAGAGAACAAATCAAAGTCTAGTATCTCCATTTCGACGGAGAGCAGATACAAAGCAGAT
324 TATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCATTTCGACGGAGAGCAGACACAAAGCAGAT
98441040 CTAACCTTCAGATGTTTATA
389 CTAACCTTCAGATGTTTATA
* *
98441060 GTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGTTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
98441125 ATTTGGCTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGACATCTCTGTATTGTCAGAG
66 ATTTGGCTTCACGTGCTTACGATGAAGCAAATCTAA-ATGATTTGGCATCTCTGTATTGTCAGAG
* * *
98441190 AACAAATTGAAGTCTGGCATCTCCATTTCGACGGAGAGTAGATACATAGCAAATCTAACCTTCAG
130 AACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAG
98441255 ATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAG
195 ATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAG
* ** *
98441320 ACATAGTTGATTTGGCTTTCACGTGCTTACAATGAAGCAAATCTAAGATGATTTGGCATCTCTAT
260 ACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGT
* * * *
98441385 ATTATCAGAGAACAAATTGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGACACATAGCAGATC
325 ATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCATTTCGACGGAGAGCAGACACAAAGCAGATC
98441450 TAACCTTCAGATGTTTATA
390 TAACCTTCAGATGTTTATA
98441469 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
98441534 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAAATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGC-TTCACGTGCTTACGATGAAGCAAATCT-AAATGATTTGGCATCTCTGTATTGTCAGA
98441599 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
129 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
98441664 GATG-----ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA
194 GATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA
* * *
98441724 GGCATAGCTGATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTG
259 GACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTG
* *
98441789 TATTGTTAAAGAACAAATCGAAG
324 TATTGTCAGAGAACAAATCGAAG
98441812 AAACAGATTT
Statistics
Matches: 699, Mismatches: 50, Indels: 11
0.92 0.07 0.01
Matches are distributed among these distances:
405 133 0.19
408 26 0.04
409 414 0.59
410 124 0.18
411 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (408 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTCACGTGCTTACGATGAAGCAAATCTAAATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGA
TGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA
CATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTA
TTGTCAGAGAACAAATCGAAGTCTAGCATCTCCATTTCGACGGAGAGCAGACACAAAGCAGATCT
AACCTTCAGATGTTTATA
Found at i:98442155 original size:261 final size:256
Alignment explanation
Indices: 98441643--98442133 Score: 718
Period size: 261 Copynumber: 1.9 Consensus size: 256
98441633 GAGAGCAGAT
*
98441643 ACATAGCAGATCTAACCTTCAGATGACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
1 ACATAGCAGATCTAACCTTCAGATGACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTA
* * * * *
98441708 CAAGGAACAAATCGAAGGCATAGCTGATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGA
66 CAAGGAACAAATCGAAGACACAGCAGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGA
* *
98441773 TGATTTGGCATCTCTGTATTGTTAAAGAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCG
131 TGATTTGGCATCTCTGTATTGTCAAAGAACAAATCGAAGAAACAGATTTGGCATCTCTGTATTCG
* * *
98441838 GCGGAGAGCAGATTGAAGATATTAACAGGACAGTCATAAGTTTACAAGAAGCAGATTAAAG
196 ACGGAGAGCAGATCGAAGATATCAACAGGACAGTCATAAGTTTACAAGAAGCAGATTAAAG
*
98441899 ACATAGCAGATCTGACCTTCAGATGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
1 ACATAGCAGATCTAACCTTCAGATG-----ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
* * *
98441964 G-TTCACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGAT
61 GCTT-ACAAGGAACAAATCGAAGACACAGCAGATTTGGCTTTCACGTGCTTACGCTGAAGCAAAT
98442028 CTAAGATGATTTGGCATCTCTGTATTGTCAGAA-AACAAATCGAAGAAGA-AGATTTGGCATCTC
125 CTAAGATGATTTGGCATCTCTGTATTGTCA-AAGAACAAATCGAAGAA-ACAGATTTGGCATCTC
* * * *
98442091 TGTGTTTGACGGAGAGCATATCGAAGATATCAACATGACAGTC
188 TGTATTCGACGGAGAGCAGATCGAAGATATCAACAGGACAGTC
98442134 TTGAGTTTGA
Statistics
Matches: 208, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
256 24 0.12
260 2 0.01
261 179 0.86
262 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (256 bp):
ACATAGCAGATCTAACCTTCAGATGACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTA
CAAGGAACAAATCGAAGACACAGCAGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGA
TGATTTGGCATCTCTGTATTGTCAAAGAACAAATCGAAGAAACAGATTTGGCATCTCTGTATTCG
ACGGAGAGCAGATCGAAGATATCAACAGGACAGTCATAAGTTTACAAGAAGCAGATTAAAG
Found at i:98442465 original size:19 final size:20
Alignment explanation
Indices: 98442441--98442483 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 20
98442431 AATCTTTAAG
98442441 GATATGCAATCTT-AGATAT
1 GATATGCAATCTTAAGATAT
98442460 GATATGCAATCTTAAAGATAT
1 GATATGCAATCTT-AAGATAT
98442481 GAT
1 GAT
98442484 CTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (20 bp):
GATATGCAATCTTAAGATAT
Found at i:98449947 original size:116 final size:113
Alignment explanation
Indices: 98449743--98449963 Score: 361
Period size: 116 Copynumber: 1.9 Consensus size: 113
98449733 GCACATTCCA
* *
98449743 TATAAATTTTGCTTCCTGCATCTGTAAGTGAAATTTGTGTATATATATTCTTTTTATATATTTGC
1 TATAAATTTTGCTTCATGCATCTGTAAGTGAAATTTGTGTATATATATTCTTTTGATATATTTGC
* * *
98449808 ATGTATCCATAAGTGAAATTTGCATGTATATATATTTCTTTCTATCTGT
66 ATGCATCCATAAGTGAAACTTGCATCTATATATA-TTCTTTCTATCTGT
98449857 TATAAATTTTGCTTCATGCATCTGTAAGTGAAATGTGTGTGTATATATATTCTTTTGATATATTT
1 TATAAATTTTGCTTCATGCATCTGTAAGTGAAAT-T-TGTGTATATATATTCTTTTGATATATTT
*
98449922 GCATGCATCCGTAAGTGAAACTTGCATCTATATATATTCTTT
64 GCATGCATCCATAAGTGAAACTTGCATCTATATATATTCTTT
98449964 TGATATATTC
Statistics
Matches: 99, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
114 33 0.33
115 7 0.07
116 59 0.60
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.47
Consensus pattern (113 bp):
TATAAATTTTGCTTCATGCATCTGTAAGTGAAATTTGTGTATATATATTCTTTTGATATATTTGC
ATGCATCCATAAGTGAAACTTGCATCTATATATATTCTTTCTATCTGT
Found at i:98449954 original size:52 final size:52
Alignment explanation
Indices: 98449871--98449972 Score: 152
Period size: 52 Copynumber: 2.0 Consensus size: 52
98449861 AATTTTGCTT
* ** *
98449871 CATGCATCTGTAAGTGAAATGTGTGTGTATATATATTCTTTTGATATATTTG
1 CATGCATCCGTAAGTGAAATGTGCATCTATATATATTCTTTTGATATATTTG
98449923 CATGCATCCGTAAGTGAAACT-TGCATCTATATATATTCTTTTGATATATT
1 CATGCATCCGTAAGTGAAA-TGTGCATCTATATATATTCTTTTGATATATT
98449973 CTTTCTATCT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 44 0.98
53 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (52 bp):
CATGCATCCGTAAGTGAAATGTGCATCTATATATATTCTTTTGATATATTTG
Found at i:98451006 original size:26 final size:23
Alignment explanation
Indices: 98450961--98451009 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 23
98450951 AAATATTATA
98450961 AATGTCATGAAAAATATAAAAAT
1 AATGTCATGAAAAATATAAAAAT
98450984 AATGTCCATGATATAAATATAAAAAT
1 AATGT-CATGA-A-AAATATAAAAAT
98451010 TTTCTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.22
24 5 0.22
25 1 0.04
26 12 0.52
ACGTcount: A:0.57, C:0.06, G:0.08, T:0.29
Consensus pattern (23 bp):
AATGTCATGAAAAATATAAAAAT
Found at i:98451228 original size:18 final size:19
Alignment explanation
Indices: 98451191--98451231 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
98451181 ATTTAGAATC
98451191 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
98451210 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
98451228 AAAA
1 AAAA
98451232 TATCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:98451233 original size:31 final size:31
Alignment explanation
Indices: 98451157--98451230 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
98451147 ACAAATTATC
*
98451157 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATCTAGAA
*
98451189 TCAAA-ACTAAAATAAATAATAAAAA-CTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATCTAGAA
98451219 TTAAATATAAAA
1 TTAAATATAAAA
98451231 ATATCAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 10 0.28
31 14 0.39
32 12 0.33
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATCTAGAA
Found at i:98454071 original size:22 final size:22
Alignment explanation
Indices: 98454045--98454089 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
98454035 TTTTAATAAA
98454045 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
98454067 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
98454089 A
1 A
98454090 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:98466165 original size:17 final size:18
Alignment explanation
Indices: 98466143--98466177 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
98466133 GTTAATAGGG
*
98466143 ACAAATGAAA-TAAATTT
1 ACAAATAAAACTAAATTT
98466160 ACAAATAAAACTAAATTT
1 ACAAATAAAACTAAATTT
98466178 GAATAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.29
Consensus pattern (18 bp):
ACAAATAAAACTAAATTT
Found at i:98471721 original size:92 final size:92
Alignment explanation
Indices: 98471564--98471748 Score: 370
Period size: 92 Copynumber: 2.0 Consensus size: 92
98471554 CATATAAAGA
98471564 AGAACCAGTTCAAATGCTAGCTCGAGAAGTGAAAGAATTAAGAAACAAACGGGTCCCTCTAGTAA
1 AGAACCAGTTCAAATGCTAGCTCGAGAAGTGAAAGAATTAAGAAACAAACGGGTCCCTCTAGTAA
98471629 AAGTACTGTGGAGAAGCCATAGTGTGG
66 AAGTACTGTGGAGAAGCCATAGTGTGG
98471656 AGAACCAGTTCAAATGCTAGCTCGAGAAGTGAAAGAATTAAGAAACAAACGGGTCCCTCTAGTAA
1 AGAACCAGTTCAAATGCTAGCTCGAGAAGTGAAAGAATTAAGAAACAAACGGGTCCCTCTAGTAA
98471721 AAGTACTGTGGAGAAGCCATAGTGTGG
66 AAGTACTGTGGAGAAGCCATAGTGTGG
98471748 A
1 A
98471749 AGAAGCAACA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 93 1.00
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.19
Consensus pattern (92 bp):
AGAACCAGTTCAAATGCTAGCTCGAGAAGTGAAAGAATTAAGAAACAAACGGGTCCCTCTAGTAA
AAGTACTGTGGAGAAGCCATAGTGTGG
Found at i:98472176 original size:20 final size:19
Alignment explanation
Indices: 98472153--98472194 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
98472143 ATTATATATA
98472153 TATTAT-ATTATATAATTGAT
1 TATTATAATTAT-TAATTG-T
98472173 TATTATAATTATTAATTGT
1 TATTATAATTATTAATTGT
98472192 TAT
1 TAT
98472195 AGTTTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 12 0.57
21 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATTATAATTATTAATTGT
Found at i:98472705 original size:16 final size:18
Alignment explanation
Indices: 98472675--98472711 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
98472665 ATAGGGGAGA
98472675 AAAGAGAAAGAAAAAAGG
1 AAAGAGAAAGAAAAAAGG
98472693 AAAGA-AAAG-AAAAAGG
1 AAAGAGAAAGAAAAAAGG
98472709 AAA
1 AAA
98472712 AACTAGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.53
17 4 0.21
18 5 0.26
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
AAAGAGAAAGAAAAAAGG
Found at i:98473317 original size:51 final size:45
Alignment explanation
Indices: 98473245--98473364 Score: 125
Period size: 45 Copynumber: 2.5 Consensus size: 45
98473235 CAGGCACTTA
* *
98473245 TGTGCCGACTACTGTTACTGTTACCATTAATGTTACTGATTC-GACACTTTG
1 TGTGTCGAATACTGTTACTGTTACCATT-A---TA--GATTCAG-CACTTTG
*
98473296 TGTGTCGAATACTGTTACTGTTACTATTATAGATTCAGCACTTTG
1 TGTGTCGAATACTGTTACTGTTACCATTATAGATTCAGCACTTTG
* *
98473341 TGTTTTGAATACTGTTACTGTTAC
1 TGTGTCGAATACTGTTACTGTTAC
98473365 TGTTACTGCT
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
45 34 0.54
46 1 0.02
47 2 0.03
50 1 0.02
51 25 0.40
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.42
Consensus pattern (45 bp):
TGTGTCGAATACTGTTACTGTTACCATTATAGATTCAGCACTTTG
Found at i:98473361 original size:6 final size:6
Alignment explanation
Indices: 98473350--98473393 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
98473340 GTGTTTTGAA
* * *
98473350 TACTGT TACTGT TACTGT TACTGC TACCGT TTCTGAT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT T
98473394 TAGGTATTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:98482760 original size:78 final size:74
Alignment explanation
Indices: 98482654--98482823 Score: 233
Period size: 78 Copynumber: 2.3 Consensus size: 74
98482644 GCAAAGTGTG
** *
98482654 AAATGTAGGTATGGTA--TC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-CCATA
1 AAATGTAGGTATGGTATTTCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TCCCATA
98482714 CCGAGCTGTGAA
65 CCGAG-T-TGAA
98482726 ATAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCCCAT
1 A-AATGTAGGTATGGTATT-TCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCCCAT
98482791 ACCGAGTTGAA
64 ACCGAGTTGAA
98482802 AAATGTAGGTATGGTATTTCAA
1 AAATGTAGGTATGGTATTTCAA
98482824 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 3, Indels: 12
0.85 0.03 0.12
Matches are distributed among these distances:
72 1 0.01
73 15 0.17
74 4 0.05
75 17 0.19
76 7 0.08
77 2 0.02
78 42 0.48
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (74 bp):
AAATGTAGGTATGGTATTTCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCCCATAC
CGAGTTGAA
Found at i:98482821 original size:35 final size:35
Alignment explanation
Indices: 98482654--98482821 Score: 162
Period size: 35 Copynumber: 4.6 Consensus size: 35
98482644 GCAAAGTGTG
* * **
98482654 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACCGAGTTGAA
98482689 AAATGTAGGTATGGTATTAT-CCATACCGAGCTGTGAA
1 AAATGTAGGTATGGTATT-TCCCATACCGAG-T-TGAA
*
98482726 ATAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AA
1 A-AATGTAGGTATGGTATT-TC----CCATACCGAGTTGAA
*
98482766 GAAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 -AAATGTAGGTATGGTATTTCCCATACCGAGTTGAA
98482802 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
98482822 AATGAGGAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 22
0.79 0.06 0.15
Matches are distributed among these distances:
35 57 0.50
36 3 0.03
37 3 0.03
38 19 0.17
39 2 0.02
40 18 0.16
41 2 0.02
42 1 0.01
43 9 0.08
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACCGAGTTGAA
Found at i:98488356 original size:16 final size:16
Alignment explanation
Indices: 98488335--98488366 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
98488325 AATGTTTTGA
98488335 GATAGTCTCTCTCCCT
1 GATAGTCTCTCTCCCT
98488351 GATAGTCTCTCTCCCT
1 GATAGTCTCTCTCCCT
98488367 CTGTTTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.38, G:0.12, T:0.38
Consensus pattern (16 bp):
GATAGTCTCTCTCCCT
Found at i:98490230 original size:18 final size:18
Alignment explanation
Indices: 98490209--98490266 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
98490199 AAGAAGATGC
98490209 AGTATGCCTTGAAGGCTA
1 AGTATGCCTTGAAGGCTA
** * * *
98490227 AGTAT-TATAGAAGACGA
1 AGTATGCCTTGAAGGCTA
*
98490244 AGAATGCCTTGAAGGCTA
1 AGTATGCCTTGAAGGCTA
98490262 AGTAT
1 AGTAT
98490267 TTGAGAAGAT
Statistics
Matches: 27, Mismatches: 12, Indels: 2
0.66 0.29 0.05
Matches are distributed among these distances:
17 11 0.41
18 16 0.59
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (18 bp):
AGTATGCCTTGAAGGCTA
Found at i:98490251 original size:35 final size:34
Alignment explanation
Indices: 98490182--98490328 Score: 161
Period size: 35 Copynumber: 4.3 Consensus size: 34
98490172 AAGTATGCCT
* * *
98490182 CCTTGAAGGCTATGT-TTAAGAAGATGCAGTATG
1 CCTTGAAGGCTAAGTATTAAGAAGACGAAGTATG
*
98490215 CCTTGAAGGCTAAGTATTATAGAAGACGAAGAATG
1 CCTTGAAGGCTAAGTATTA-AGAAGACGAAGTATG
* * *
98490250 CCTTGAAGGCTAAGTATTTGAGAAGATGAAGTTTG
1 CCTTGAAGGCTAAGTA-TTAAGAAGACGAAGTATG
* * * *
98490285 CCTTAAAGGCTAAGTGTCGAAGAAGACAAAGTATG
1 CCTTGAAGGCTAAGTAT-TAAGAAGACGAAGTATG
98490320 CCTTGAAGG
1 CCTTGAAGG
98490329 TTGTGTCTAA
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
33 14 0.15
34 4 0.04
35 74 0.79
36 2 0.02
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (34 bp):
CCTTGAAGGCTAAGTATTAAGAAGACGAAGTATG
Found at i:98490287 original size:70 final size:68
Alignment explanation
Indices: 98490182--98490328 Score: 179
Period size: 70 Copynumber: 2.1 Consensus size: 68
98490172 AAGTATGCCT
* * * * *
98490182 CCTTGAAGGCTATGTTTAAGAAGATGCAGTATGCCTTGAAGGCTAAGTAT-TATAGAAGACGAAG
1 CCTTGAAGGCTATATTTAAGAAGATGAAGTATGCCTTAAAGGCTAAGTATCGA-AGAAGACAAAG
98490246 AATG
65 AATG
* * *
98490250 CCTTGAAGGCTAAGTATTTGAGAAGATGAAGTTTGCCTTAAAGGCTAAGTGTCGAAGAAGACAAA
1 CCTTGAAGGCT-A-TATTTAAGAAGATGAAGTATGCCTTAAAGGCTAAGTATCGAAGAAGACAAA
*
98490315 GTATG
64 GAATG
98490320 CCTTGAAGG
1 CCTTGAAGG
98490329 TTGTGTCTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
68 11 0.16
69 1 0.01
70 54 0.81
71 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (68 bp):
CCTTGAAGGCTATATTTAAGAAGATGAAGTATGCCTTAAAGGCTAAGTATCGAAGAAGACAAAGA
ATG
Found at i:98491766 original size:56 final size:53
Alignment explanation
Indices: 98491595--98491808 Score: 208
Period size: 56 Copynumber: 3.9 Consensus size: 53
98491585 AATTTTGCTT
*
98491595 CATGCATCTGTAAGTGAAA-TGTG----TATATATATTCTTTTGATATATTTG
1 CATGCATCCGTAAGTGAAATTGTGTATATATATATATTCTTTTGATATATTTG
* *
98491643 CATGCATCCGTAAGTGAAATTTGCATGTATATATATCT-TTCTATTTGTTATAAATTTTG
1 CATGCATCCGTAAGTGAAA-TTG--TGTATATATATATATTCT-TTTG--ATATA-TTTG
*
98491702 CATCATGCATCTGTAAGTGAAATGTGTGTATATATATATAAATTCTTTTGATATATTTG
1 ---CATGCATCCGTAAGTGAAAT-TGTGTATATATATAT--ATTCTTTTGATATATTTG
* *
98491761 CATGCATCCGTAAGTGAAATT-TGCATCTATATATATTCTTTTGATATA
1 CATGCATCCGTAAGTGAAATTGTGTATATATATATATTCTTTTGATATA
98491809 CTCTTTCTAT
Statistics
Matches: 138, Mismatches: 9, Indels: 34
0.76 0.05 0.19
Matches are distributed among these distances:
48 18 0.13
50 2 0.01
52 16 0.12
54 11 0.08
55 5 0.04
56 29 0.21
58 4 0.03
59 8 0.06
60 16 0.12
61 1 0.01
62 24 0.17
63 4 0.03
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.44
Consensus pattern (53 bp):
CATGCATCCGTAAGTGAAATTGTGTATATATATATATTCTTTTGATATATTTG
Found at i:98491857 original size:29 final size:28
Alignment explanation
Indices: 98491804--98491871 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
98491794 TATTCTTTTG
* * *
98491804 ATATAC-TCTTTCTATCTATTTGTGTAT
1 ATATACTTTTTTCTATCTATGTGTGTAC
*
98491831 ATATA-TTTTTTCTATCTGTATGTGTGTGC
1 ATATACTTTTTTCTATC--TATGTGTGTAC
98491860 ATATACTTTTTT
1 ATATACTTTTTT
98491872 TATATAATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
27 14 0.42
29 13 0.39
30 6 0.18
ACGTcount: A:0.21, C:0.12, G:0.10, T:0.57
Consensus pattern (28 bp):
ATATACTTTTTTCTATCTATGTGTGTAC
Found at i:98498901 original size:22 final size:22
Alignment explanation
Indices: 98498873--98498917 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
98498863 AGGGGGAGTG
98498873 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
98498895 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
98498917 T
1 T
98498918 TTTTAAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:98502833 original size:41 final size:41
Alignment explanation
Indices: 98502788--98502916 Score: 204
Period size: 41 Copynumber: 3.1 Consensus size: 41
98502778 GTGGGGCATC
*
98502788 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAGGAG
1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
* * *
98502829 GCATACTTGTTTGGTACATTGTTGGTAAAGGCTGTGAAGAG
1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
*
98502870 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTAAAGAG
1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
*
98502911 GAATAC
1 GCATAC
98502917 ATAGTTGCTA
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 79 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (41 bp):
GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
Found at i:98503289 original size:16 final size:16
Alignment explanation
Indices: 98503268--98503298 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98503258 AGCCTAATCC
*
98503268 CTAAATTTAACCCAAA
1 CTAAATTGAACCCAAA
98503284 CTAAATTGAACCCAA
1 CTAAATTGAACCCAA
98503299 TCTACCCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.26, G:0.03, T:0.23
Consensus pattern (16 bp):
CTAAATTGAACCCAAA
Found at i:98504555 original size:23 final size:22
Alignment explanation
Indices: 98504457--98505112 Score: 180
Period size: 24 Copynumber: 28.9 Consensus size: 22
98504447 TTATGTGCAC
*
98504457 ATATA-TATGTATATATTTAT-
1 ATATATTATGTATATATTTTTA
* *
98504477 ATAGTACTATGGT-TAT-TTTTAA
1 ATA-TATTAT-GTATATATTTTTA
* *
98504499 TATATATATATTGTATATGCTTTTCA
1 -ATATAT-TA-TGTATAT-ATTTTTA
98504525 TATATATTATGTA-AGTATTTTTA
1 -ATATATTATGTATA-TATTTTTA
98504548 ATACTATTAAT-TATATATTTTTA
1 ATA-TATT-ATGTATATATTTTTA
98504571 TATATATTATGTATATATTTTTAA
1 -ATATATTATGTATATATTTTT-A
*
98504595 ATATCCTCCTAT-TCATATATTTTT-
1 ATAT-AT--TATGT-ATATATTTTTA
*
98504619 ATGTTATCTCATGTATATATATTTTA
1 AT-ATAT-T-ATGTATATAT-TTTTA
*
98504645 ATATCATTA-GTTATATATTTTTT
1 ATAT-ATTATG-TATATATTTTTA
98504668 ATATTATTTCATGTATATATTTTTA
1 ATA-TA-TT-ATGTATATATTTTTA
* *
98504693 TATTATCCTTAT-TAT-TATTATT-
1 -A-TAT-ATTATGTATATATTTTTA
*
98504715 A-ATATTA-GTATAT-GTTTTA
1 ATATATTATGTATATATTTTTA
* *
98504734 TTATA-TATGTATATATCTTTA
1 ATATATTATGTATATATTTTTA
* * *
98504755 ATATGTAATGTATATATCTTTA
1 ATATATTATGTATATATTTTTA
*
98504777 ATATACATATAGGTATATATTTATGTA
1 ATAT--AT-TATGTATATATTT-T-TA
* *
98504804 ATATTATTAATAG-GTGT-TTTTTA
1 ATA-TATT-AT-GTATATATTTTTA
* * * * *
98504827 ACATCATTATTTCTA-ATATGT-
1 ATAT-ATTATGTATATATTTTTA
*
98504848 ATATATTATGTAAATATTTTAATA
1 ATATATTATGTATATATTTT--TA
* * *
98504872 TTATATTATATATGCATTTTTTTA
1 ATATATTATGTAT--ATATTTTTA
*
98504896 TATATATTACGTGTATACACTTTTT-
1 -ATATATTA--TGTATATA-TTTTTA
*
98504921 A-ATA-T-TGTAT-T-TTTAT-
1 ATATATTATGTATATATTTTTA
* **
98504937 ATATATCATGTATATATTTCGA
1 ATATATTATGTATATATTTTTA
98504959 ATACTA-TAT-TATAT-TTTTTA
1 ATA-TATTATGTATATATTTTTA
98504979 CATATTATCTTATGTATATATTTTTTA
1 -ATA-TA--TTATGTATATA-TTTTTA
* *
98505006 TATATGTTATGTACATAATTTTT-
1 -ATATATTATGTATAT-ATTTTTA
*
98505029 -T-TAATAT-TATAT-TTTTTA
1 ATATATTATGTATATATTTTTA
98505047 ATATTATTATGTATATA-TTTTA
1 ATA-TATTATGTATATATTTTTA
* *
98505069 ATATTACTA-GTTATATTTTTTTA
1 ATA-TATTATG-TATATATTTTTA
*
98505092 TACTATTTTATGTATATATTT
1 -A-TATATTATGTATATATTT
98505113 CAAACACTAT
Statistics
Matches: 476, Mismatches: 71, Indels: 174
0.66 0.10 0.24
Matches are distributed among these distances:
16 5 0.01
17 8 0.02
18 9 0.02
19 20 0.04
20 28 0.06
21 39 0.08
22 68 0.14
23 83 0.17
24 86 0.18
25 56 0.12
26 52 0.11
27 21 0.04
28 1 0.00
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (22 bp):
ATATATTATGTATATATTTTTA
Found at i:98504592 original size:24 final size:23
Alignment explanation
Indices: 98504457--98504798 Score: 170
Period size: 23 Copynumber: 14.8 Consensus size: 23
98504447 TTATGTGCAC
98504457 ATATA-TATGTATATA--TTTAT
1 ATATATTATGTATATATTTTTAT
* *
98504477 ATAGTACTATGGT-TAT-TTTTAAT
1 ATA-TATTAT-GTATATATTTTTAT
* *
98504500 ATATATATATTGTATATGCTTTTCAT
1 ATATAT-TA-TGTATAT-ATTTTTAT
98504526 ATATATTATGTA-AGTATTTTTA-
1 ATATATTATGTATA-TATTTTTAT
98504548 ATACTATTAAT-TATATATTTTTAT
1 ATA-TATT-ATGTATATATTTTTAT
*
98504572 ATATATTATGTATATATTTTTAA
1 ATATATTATGTATATATTTTTAT
*
98504595 ATATCCTCCTAT-TCATATATTTTTAT
1 ATAT-AT--TATGT-ATATATTTTTAT
*
98504621 GT-TATCTCATGTATATATATTTTA-
1 ATATAT-T-ATGTATATAT-TTTTAT
98504645 ATATCATTA-GTTATATATTTTT-T
1 ATAT-ATTATG-TATATATTTTTAT
98504668 ATATTATTTCATGTATATATTTTTAT
1 ATA-TA-TT-ATGTATATATTTTTAT
** *
98504694 AT-TATCCT-TAT-TATTATTAT
1 ATATATTATGTATATATTTTTAT
*
98504714 -TAATATTA-GTATAT-GTTTTAT
1 AT-ATATTATGTATATATTTTTAT
*
98504735 -TATA-TATGTATATATCTTTA-
1 ATATATTATGTATATATTTTTAT
* * *
98504755 ATATGTAATGTATATATCTTTAAT
1 ATATATTATGTATATAT-TTTTAT
* *
98504779 ATACATATAGGTATATATTT
1 ATATAT-TATGTATATATTT
98504799 ATGTAATATT
Statistics
Matches: 251, Mismatches: 28, Indels: 82
0.70 0.08 0.23
Matches are distributed among these distances:
19 3 0.01
20 20 0.08
21 24 0.10
22 25 0.10
23 68 0.27
24 45 0.18
25 33 0.13
26 33 0.13
ACGTcount: A:0.34, C:0.05, G:0.06, T:0.55
Consensus pattern (23 bp):
ATATATTATGTATATATTTTTAT
Found at i:98504748 original size:22 final size:21
Alignment explanation
Indices: 98504722--98504781 Score: 68
Period size: 22 Copynumber: 2.9 Consensus size: 21
98504712 ATTAATATTA
*
98504722 GTATATGT-TTTATTATATAT
1 GTATATATCTTTATTATATAT
* *
98504742 GTATATATCTTTAATATGTAAT
1 GTATATATCTTTATTATAT-AT
*
98504764 GTATATATCTTTAATATA
1 GTATATATCTTTATTATA
98504782 CATATAGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.21
21 8 0.24
22 19 0.56
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.53
Consensus pattern (21 bp):
GTATATATCTTTATTATATAT
Found at i:98505005 original size:110 final size:111
Alignment explanation
Indices: 98504864--98505112 Score: 276
Period size: 111 Copynumber: 2.2 Consensus size: 111
98504854 TATGTAAATA
* **
98504864 TTTTAATATTATATTATATATGCAT-TTTTTTATATATATTACGTGTATACA-CTTTTTAATATT
1 TTTTAATATTATATTATGTAT--ATATTTTTTATATATATTACGTACATA-ATCTTTTTAATATT
*
98504927 GTA-TTTTT-ATATATATCATGTATATATTTCGAATACTA-TA-TTATATT
63 ATATTTTTTAATAT-TATCATGTATATATTT-GAATACTACTAGTTATATT
* * * *
98504974 TTTTACATATTATCTTATGTATATATTTTTTATATATGTTATGTACATAATTTTTTTAATATTAT
1 TTTTA-ATATTATATTATGTATATATTTTTTATATATATTACGTACATAATCTTTTTAATATTAT
* * *
98505039 ATTTTTTAATATTATTATGTATATATTTTAATATTACTAGTTATATT
65 ATTTTTTAATATTATCATGTATATATTTGAATACTACTAGTTATATT
* * *
98505086 TTTTTATACTATTTTATGTATATATTT
1 TTTTAATATTATATTATGTATATATTT
98505113 CAAACACTAT
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
109 3 0.03
110 44 0.37
111 56 0.47
112 15 0.13
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (111 bp):
TTTTAATATTATATTATGTATATATTTTTTATATATATTACGTACATAATCTTTTTAATATTATA
TTTTTTAATATTATCATGTATATATTTGAATACTACTAGTTATATT
Found at i:98505008 original size:25 final size:26
Alignment explanation
Indices: 98504968--98505038 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 26
98504958 AATACTATAT
98504968 TATATTTTTTACATATTATCTTATGTA
1 TATATTTTTTA-ATATTATCTTATGTA
*
98504995 TATATTTTTT-ATA-TATGTTATGTA
1 TATATTTTTTAATATTATCTTATGTA
*
98505019 CATAATTTTTTTAATATTAT
1 TAT-A-TTTTTTAATATTAT
98505039 ATTTTTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
24 12 0.32
25 4 0.11
26 6 0.16
27 13 0.34
28 3 0.08
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TATATTTTTTAATATTATCTTATGTA
Found at i:98505018 original size:70 final size:65
Alignment explanation
Indices: 98504930--98505067 Score: 161
Period size: 70 Copynumber: 2.0 Consensus size: 65
98504920 TAATATTGTA
*
98504930 TTTTTATATATATCATGTATAT-ATTTCGAATACTATATTATATTTTTTACATATTATCTTATGT
1 TTTTTATATATATCATGTACATAATTT-GAATA--ATATTATATTTTTTA-ATATTA--TTATGT
98504994 ATATAT
60 ATATAT
* * ***
98505000 TTTTTATATATGTTATGTACATAATTTTTTTAATATTATATTTTTTAATATTATTATGTATATAT
1 TTTTTATATATATCATGTACATAATTTGAATAATATTATATTTTTTAATATTATTATGTATATAT
98505065 TTT
1 TTT
98505068 AATATTACTA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
65 15 0.25
67 6 0.10
68 15 0.25
70 21 0.34
71 4 0.07
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.59
Consensus pattern (65 bp):
TTTTTATATATATCATGTACATAATTTGAATAATATTATATTTTTTAATATTATTATGTATATAT
Found at i:98505040 original size:41 final size:43
Alignment explanation
Indices: 98504995--98505112 Score: 118
Period size: 41 Copynumber: 2.7 Consensus size: 43
98504985 ATCTTATGTA
*
98504995 TATATTTTTTATATATGTTATGTACATAATTTT-T-TTAATA-T
1 TATATTTTTTATATATATTATGTACAT-ATTTTATATTAATAGT
* *
98505036 TATATTTTTTA-ATATTATTATGTATATATTTTAATATTACTAGT
1 TATATTTTTTATATA-TATTATGTACATATTTT-ATATTAATAGT
* *
98505080 TATATTTTTTTATACTATTTTATGTATATATTT
1 TATA-TTTTTTATA-TATATTATGTACATATTT
98505113 CAAACACTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
40 8 0.12
41 21 0.32
42 1 0.02
43 5 0.08
44 5 0.08
45 7 0.11
46 16 0.25
47 2 0.03
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (43 bp):
TATATTTTTTATATATATTATGTACATATTTTATATTAATAGT
Found at i:98505045 original size:15 final size:15
Alignment explanation
Indices: 98505025--98505053 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
98505015 TGTACATAAT
98505025 TTTTTTAATATTATA
1 TTTTTTAATATTATA
98505040 TTTTTTAATATTAT
1 TTTTTTAATATTAT
98505054 TATGTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAATATTATA
Found at i:98505085 original size:20 final size:22
Alignment explanation
Indices: 98504944--98505087 Score: 79
Period size: 21 Copynumber: 6.6 Consensus size: 22
98504934 TATATATATC
* *
98504944 ATGTATATATTTCGAATACTA-T
1 ATGTATATATTT-TAATATTACT
*
98504966 AT-TATATTTTTTACATATTATCTT
1 ATGTATATATTTTA-ATATTA-C-T
* **
98504990 ATGTATATATTTTTTATATATGTT
1 ATGTATATA-TTTTAATAT-TACT
* *
98505014 ATGTACATAATTTT--T-TTAAT
1 ATGTATAT-ATTTTAATATTACT
* *
98505034 AT-TATATTTTTTAATATTATT
1 ATGTATATATTTTAATATTACT
98505055 ATGTATATATTTTAATATTACT
1 ATGTATATATTTTAATATTACT
98505077 A-GT-TATATTTT
1 ATGTATATATTTT
98505088 TTTATACTAT
Statistics
Matches: 95, Mismatches: 15, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
18 4 0.04
19 4 0.04
20 14 0.15
21 22 0.23
22 21 0.22
24 15 0.16
25 10 0.11
26 5 0.05
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (22 bp):
ATGTATATATTTTAATATTACT
Found at i:98505312 original size:21 final size:20
Alignment explanation
Indices: 98505271--98505314 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 20
98505261 TTATTTCTAA
98505271 TATGTATATATCTTTAATAC
1 TATGTATATATCTTTAATAC
98505291 TATGTATATA-CTTTGCAATAC
1 TATGTATATATCTTT--AATAC
98505312 TAT
1 TAT
98505315 TATTATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.18
20 10 0.45
21 8 0.36
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (20 bp):
TATGTATATATCTTTAATAC
Found at i:98508331 original size:53 final size:53
Alignment explanation
Indices: 98508250--98508400 Score: 187
Period size: 53 Copynumber: 2.8 Consensus size: 53
98508240 CTTACACGGT
* *
98508250 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* * * *
98508305 TCACATTATACCGATGCCATAGCCCAGCTACGTTCTTATACGGAGTCATATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
98508358 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
98508401 GCACACTTAT
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.01
53 76 0.90
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:98515739 original size:53 final size:53
Alignment explanation
Indices: 98515658--98515808 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
98515648 CTTACACGGT
* *
98515658 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
98515713 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
98515766 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
98515809 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:98523068 original size:53 final size:53
Alignment explanation
Indices: 98522987--98523137 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
98522977 CTTACACGGT
* *
98522987 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
98523042 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
98523095 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
98523138 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:98528962 original size:56 final size:56
Alignment explanation
Indices: 98528897--98529069 Score: 337
Period size: 56 Copynumber: 3.1 Consensus size: 56
98528887 AAGGGATGAT
*
98528897 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
98528953 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
98529009 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
98529065 GGCAA
1 GGCAA
98529070 TAAACTAATA
Statistics
Matches: 116, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 116 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
Found at i:98530279 original size:40 final size:39
Alignment explanation
Indices: 98530196--98530415 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 39
98530186 TCGAATGATG
* * * * *
98530196 TCCGGCTAAGTCCCGAAGGC-TTTGTGCTAAATGACCATA
1 TCCGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
98530235 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
98530275 TCCGGCTAAG-CCCGAA-GCA-TTGTGCGAGTTACTAAA
1 TCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
98530311 TCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
98530350 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
98530391 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCC-GGCTAAGTCCCGAAGGCATTTG
98530416 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
36 24 0.15
37 9 0.06
38 8 0.05
39 30 0.19
40 78 0.49
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:98530422 original size:80 final size:76
Alignment explanation
Indices: 98530248--98530448 Score: 246
Period size: 79 Copynumber: 2.6 Consensus size: 76
98530238 GGACTAAGAT
* *
98530248 CCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAG-CCCGAA-GCATTGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAG-TACTAAATCCGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
98530311 TCCGGGTAAGTC
65 TCCGGGTAAGTC
98530323 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAG-TACTAAATCC-GGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA
*
98530388 TAA-CCGGGCTATGTC
63 -AATCCGGG-TAAGTC
** * * *
98530403 CCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGTGCGAGTA-CTAAATCCGGTTAAGTCCCGAAGG
98530449 TACGTGATTT
Statistics
Matches: 110, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
75 28 0.25
76 6 0.05
77 6 0.05
78 3 0.03
79 36 0.33
80 31 0.28
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (76 bp):
CCGAAGGCATTTGTGCGAGTACTAAATCCGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAT
CCGGGTAAGTC
Found at i:98531837 original size:4 final size:4
Alignment explanation
Indices: 98531828--98531867 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
98531818 AGCAAACGTG
*
98531828 AGAA AGAA AGAA AGAA AGAT AGAA AG-A AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
98531868 TAGAAAAGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 3 0.09
4 30 0.91
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (4 bp):
AGAA
Found at i:98532399 original size:21 final size:20
Alignment explanation
Indices: 98532363--98532431 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 20
98532353 TAATAATGAG
98532363 TATAATATGAATAAAAAATATAA
1 TATAAT-TG-ATAAAAAATA-AA
98532386 TATAATTGATAAAAAACTAAA
1 TATAATTGATAAAAAA-TAAA
* *
98532407 TTTAATTGATAGAAAATAAA
1 TATAATTGATAAAAAATAAA
98532427 TATAA
1 TATAA
98532432 CATAATTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
20 8 0.19
21 24 0.57
22 4 0.10
23 6 0.14
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (20 bp):
TATAATTGATAAAAAATAAA
Found at i:98532562 original size:18 final size:20
Alignment explanation
Indices: 98532519--98532562 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
98532509 AGGGATAATA
98532519 AATAAT-GTACAAAAAATGT
1 AATAATAGTACAAAAAATGT
*
98532538 -ATGATAGTA-AAAAAA-GT
1 AATAATAGTACAAAAAATGT
98532555 AATAATAG
1 AATAATAG
98532563 ATTAATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
17 2 0.10
18 16 0.76
19 3 0.14
ACGTcount: A:0.59, C:0.02, G:0.14, T:0.25
Consensus pattern (20 bp):
AATAATAGTACAAAAAATGT
Found at i:98546532 original size:37 final size:37
Alignment explanation
Indices: 98546491--98546666 Score: 298
Period size: 37 Copynumber: 4.8 Consensus size: 37
98546481 TTTGAGTACT
98546491 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
98546528 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
98546565 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
98546602 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
98546639 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
98546667 TAGCTTCAGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:98546738 original size:45 final size:46
Alignment explanation
Indices: 98546629--98546752 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
98546619 GTGATAAGTG
* *
98546629 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
98546675 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
98546720 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
98546753 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:98555995 original size:75 final size:75
Alignment explanation
Indices: 98555828--98555997 Score: 243
Period size: 75 Copynumber: 2.3 Consensus size: 75
98555818 AACTCGGATG
* *
98555828 TTTTAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACAC
* *
98555893 GCTGAGGTAT
66 GCCGAGGAAT
* * *
98555903 TTTCAATTTATGGTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC-GGTTCACA
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG-TCACA
*
98555967 TGCCGAGGAAT
65 CGCCGAGGAAT
*
98555978 TTTTAAATTCTGTTTTTCAA
1 TTTTAATTTCTGTTTTTCAA
98555998 TTTATGTTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
74 2 0.02
75 80 0.98
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (75 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACAC
GCCGAGGAAT
Found at i:98556057 original size:90 final size:86
Alignment explanation
Indices: 98555902--98556265 Score: 379
Period size: 90 Copynumber: 4.1 Consensus size: 86
98555892 CGCTGAGGTA
*
98555902 TTTTCAATTTATGGTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGTTCACA
1 TTTTCAATTTAT-GTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACA
* *
98555967 TGCCGAGGAATTTTTAAATTCTGT
63 TGCCGAGGTATTTTCAAATTCTGT
** **
98555991 TTTTCAATTTATGTTTTCCAAAAAATCAACTCATATCACGAGAGGTGAGTTGAGTTTCGAGCCAC
1 TTTTCAATTTATGTTTT-C-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-G-CAC
* * * *
98556056 ATGCCAAGGTCTTTTCAAATTGTAT
62 ATGCCGAGGTATTTTCAAATTCTGT
* * *
98556081 TTTT-AATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTTAGCCTCGGGAC
1 TTTTCAATTTATG-TTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCAC
* * *
98556145 ATGCTGAGGTATTTTCAATTTCTGC
62 ATGCCGAGGTATTTTCAAATTCTGT
* *
98556170 GTTTCAATTTATGTGTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
1 TTTTCAATTTATGT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-CACA
* * * * *
98556235 CGTCGAGGTATTTCCAATTTCAGT
63 TGCCGAGGTATTTTCAAATTCTGT
98556259 TTTTCAA
1 TTTTCAA
98556266 AAAAATCAAC
Statistics
Matches: 227, Mismatches: 38, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
87 36 0.16
88 7 0.03
89 72 0.32
90 76 0.33
91 36 0.16
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (86 bp):
TTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACATGC
CGAGGTATTTTCAAATTCTGT
Found at i:98556176 original size:14 final size:14
Alignment explanation
Indices: 98556157--98556190 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98556147 GCTGAGGTAT
*
98556157 TTTCAATTTCTGCG
1 TTTCAATTTATGCG
*
98556171 TTTCAATTTATGTG
1 TTTCAATTTATGCG
98556185 TTTCAA
1 TTTCAA
98556191 AGATCAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.53
Consensus pattern (14 bp):
TTTCAATTTATGCG
Found at i:98557399 original size:6 final size:6
Alignment explanation
Indices: 98557374--98557416 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
98557364 TTATACATAT
**
98557374 ATAATAA ATAAAA AGGAAA ATAAAA AT-AAA ATAAAA ATAAAA A
1 ATAA-AA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA A
98557417 AAATTTATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
5 5 0.16
6 22 0.71
7 4 0.13
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:98557404 original size:11 final size:11
Alignment explanation
Indices: 98557379--98557419 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
98557369 CATATATAAT
*
98557379 AAATAAAAAGGA
1 AAATAAAAA-TA
98557391 AAATAAAAATA
1 AAATAAAAATA
98557402 AAATAAAAATA
1 AAATAAAAATA
98557413 AAA-AAAA
1 AAATAAAA
98557420 TTTATCTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
10 4 0.14
11 15 0.54
12 9 0.32
ACGTcount: A:0.83, C:0.00, G:0.05, T:0.12
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:98558205 original size:23 final size:22
Alignment explanation
Indices: 98558101--98558813 Score: 199
Period size: 23 Copynumber: 30.7 Consensus size: 22
98558091 ATGTGCATAT
98558101 ATATATATATGTATATATTTATATA
1 ATATAT-TATGTATATATTT-T-TA
* *
98558126 GTACTATTAATG-GT-TATTTTTA
1 ATA-TATT-ATGTATATATTTTTA
* *
98558148 ATATATGTATATTGTATATGCTTTTCA
1 ATATA--T-TA-TGTATAT-ATTTTTA
98558175 TATATATTATGTA-AGTATTTTTA
1 -ATATATTATGTATA-TATTTTTA
98558198 ATACTATTAAT-TATATATTTTTA
1 ATA-TATT-ATGTATATATTTTTA
98558221 TATATATTATGTATATATTTTTAA
1 -ATATATTATGTATATATTTTT-A
*
98558245 ATATCCTCCTAT-TCATATATTTTT-
1 ATAT-AT--TATGT-ATATATTTTTA
*
98558269 ATGTTATCTCATGTATATATATTTTA
1 AT-ATAT-T-ATGTATATAT-TTTTA
*
98558295 ATATCATTA-GTTATATATTTTTT
1 ATAT-ATTATG-TATATATTTTTA
98558318 ATACTATTTCATGTATATATTTTTA
1 ATA-TA-TT-ATGTATATATTTTTA
* *
98558343 TATTATCCTTAT-TAT-TATTATT-
1 -A-TAT-ATTATGTATATATTTTTA
*
98558365 A-ATATTA-GTATAT-GTTTTA
1 ATATATTATGTATATATTTTTA
*
98558384 TTATA-TATGTATATATCTTTAATA
1 ATATATTATGTATATAT-TTT--TA
*
98558408 TATATATATAGGTATATATTTATGTA
1 -ATATAT-TATGTATATATTT-T-TA
*
98558434 ATATTATTAATAGGTGT-T-TTTTTA
1 ATA-TATT-AT--GTATATATTTTTA
* * * * *
98558458 ACATCATTATTTCTA-ATATGT-
1 ATAT-ATTATGTATATATTTTTA
*
98558479 ATATATTATGTAAATATTTTAATA
1 ATATATTATGTATATATTTT--TA
* * *
98558503 TTATATTATATATGTATTTTTA
1 ATATATTATGTATATATTTTTA
* *
98558525 TATATATCATGTATATATTTTGA
1 -ATATATTATGTATATATTTTTA
*
98558548 ATACTA-TAT-TATATTTTTTTA
1 ATA-TATTATGTATATATTTTTA
98558569 CATATTATCTTATGTATATATTTTTTA
1 -ATA-TA--TTATGTATATA-TTTTTA
* *
98558596 TATATGTTATGTACATAATTTTT-
1 -ATATATTATGTATAT-ATTTTTA
* *
98558619 -T-TAATAT-TATAT-TTTTTT
1 ATATATTATGTATATATTTTTA
98558637 ATATTATTATGTATATA-TTTTA
1 ATA-TATTATGTATATATTTTTA
* *
98558659 ATATTACTA-GTTATATTTTTTTA
1 ATA-TATTATG-TATATATTTTTA
* **
98558682 TACTATTTTATGTATATATTTCAA
1 -A-TATATTATGTATATATTTTTA
* *
98558706 ACACTATATAT-TATATATTTCTA
1 ATA-TAT-TATGTATATATTTTTA
* * * * *
98558729 ATACCATTA-CTATTTATATAT-
1 ATA-TATTATGTATATATTTTTA
** * *
98558750 ATATATTATGTACGTACTTGTAA
1 ATATATTATGTATATA-TTTTTA
98558773 CATCATTATTATGTATATATTTTTA
1 -AT-A-TATTATGTATATATTTTTA
98558798 ATATATATATGTATAT
1 ATATAT-TATGTATAT
98558814 TTATGTAGTA
Statistics
Matches: 513, Mismatches: 86, Indels: 180
0.66 0.11 0.23
Matches are distributed among these distances:
17 5 0.01
18 9 0.02
19 10 0.02
20 24 0.05
21 35 0.07
22 64 0.12
23 116 0.23
24 105 0.20
25 51 0.10
26 58 0.11
27 28 0.05
28 8 0.02
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (22 bp):
ATATATTATGTATATATTTTTA
Found at i:98558242 original size:24 final size:23
Alignment explanation
Indices: 98558098--98558702 Score: 261
Period size: 24 Copynumber: 26.0 Consensus size: 23
98558088 TTTATGTGCA
*
98558098 TATATATATATATGTATATATTTA
1 TATATATAT-TATGTATATATTTT
98558122 TATAGTACTATTAATGGT-TAT-TTTT
1 TATA-TA-TATT-AT-GTATATATTTT
* * *
98558147 AATATATGTATATTGTATATGCTTTT
1 TATATATAT-TA-TGTATAT-ATTTT
*
98558173 CATATATATTATGTA-AGTATTTT
1 TATATATATTATGTATA-TATTTT
98558196 TA-ATACTATTAAT-TATATATTTT
1 TATATA-TATT-ATGTATATATTTT
98558219 TATATATATTATGTATATATTTT
1 TATATATATTATGTATATATTTT
* *
98558242 TAAATATCCTCCTAT-TCATATATTTT
1 TATATAT-AT--TATGT-ATATATTTT
*
98558268 TATGT-TATCTCATGTATATATATTT
1 TATATATAT-T-ATGTATATAT-TTT
98558293 TA-ATATCATTA-GTTATATATTTT
1 TATATAT-ATTATG-TATATATTTT
98558316 T-TATACTATTTCATGTATATATTTT
1 TATATA-TA-TT-ATGTATATATTTT
** *
98558341 TATAT-TATCCT-TAT-TATTAT
1 TATATATATTATGTATATATTTT
*
98558361 TAT-TAATATTA-GTATAT-GTTT
1 TATAT-ATATTATGTATATATTTT
98558382 TAT-TATA-TATGTATATATCTTT
1 TATATATATTATGTATATAT-TTT
* *
98558404 AATATATATATATAGGTATATATTTA
1 --TATATATAT-TATGTATATATTTT
* *
98558430 TGTA-ATATTAT-TAATAGGTGTTTT
1 TATATATATTATGT-ATA--TATTTT
* * * * *
98558454 TTTAACATCATTAT-T-TCTA-ATA
1 TAT-ATAT-ATTATGTATATATTTT
* *
98558476 TGTATATATTATGTAAATATTTT
1 TATATATATTATGTATATATTTT
* * *
98558499 AATATTATATTATATATGTATTTT
1 TATA-TATATTATGTATATATTTT
*
98558523 TATATATATCATGTATATATTTT
1 TATATATATTATGTATATATTTT
* *
98558546 GA-ATACTA-TAT-TATATTTTTT
1 TATATA-TATTATGTATATATTTT
*
98558567 TACATATTATCTTATGTATATATTTTT
1 T--ATA-TATATTATGTATATA-TTTT
* *
98558594 TATATATGTTATGTACATAATTTT
1 TATATATATTATGTATAT-ATTTT
*
98558618 T-T-TA-A-TAT-TATATTTTTT
1 TATATATATTATGTATATATTTT
98558636 TATAT-TATTATGTATATATTTT
1 TATATATATTATGTATATATTTT
* * *
98558658 AATAT-TACTA-GTTATATTTTTT
1 TATATATATTATG-TATATATTTT
*
98558680 TATACTATTTTATGTATATATTT
1 TATA-TATATTATGTATATATTT
98558703 CAAACACTAT
Statistics
Matches: 444, Mismatches: 66, Indels: 142
0.68 0.10 0.22
Matches are distributed among these distances:
18 5 0.01
19 8 0.02
20 27 0.06
21 33 0.07
22 56 0.13
23 87 0.20
24 107 0.24
25 49 0.11
26 49 0.11
27 23 0.05
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (23 bp):
TATATATATTATGTATATATTTT
Found at i:98558386 original size:21 final size:23
Alignment explanation
Indices: 98558366--98558430 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 23
98558356 ATTATTATTA
98558366 ATAT-TAGTATATGTTTTAT-TAT
1 ATATATAGTATAT-TTTTATATAT
* *
98558388 ATATGTA-TATATCTTTAATATAT
1 ATATATAGTATAT-TTTTATATAT
*
98558411 ATATATAGGTATATATTTAT
1 ATATATA-GTATATTTTTAT
98558431 GTAATATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
22 14 0.41
23 11 0.32
24 4 0.12
25 5 0.15
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.54
Consensus pattern (23 bp):
ATATATAGTATATTTTTATATAT
Found at i:98558497 original size:28 final size:28
Alignment explanation
Indices: 98558465--98558518 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
98558455 TTAACATCAT
98558465 TATTTCTAATATGTATA-TAT-TATGTAAA
1 TATTT-TAATAT-TATATTATATATGTAAA
98558493 TATTTTAATATTATATTATATATGTA
1 TATTTTAATATTATATTATATATGTA
98558519 TTTTTATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 4 0.17
27 9 0.38
28 11 0.46
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.54
Consensus pattern (28 bp):
TATTTTAATATTATATTATATATGTAAA
Found at i:98558584 original size:47 final size:49
Alignment explanation
Indices: 98558478--98558592 Score: 134
Period size: 47 Copynumber: 2.4 Consensus size: 49
98558468 TTCTAATATG
* * * *
98558478 TATATATTATGTAAATATTTTAATATTATATTATATATGTATTTTTATA
1 TATATCTTATGTATATATTTTAATACTATATTATATATGTATTTTCATA
98558527 TATATC--ATGTATATATTTTGAATACTATATTATAT-T-T-TTTTACATA
1 TATATCTTATGTATATATTTT-AATACTATATTATATATGTATTTT-CATA
98558573 T-TATCTTATGTATATATTTT
1 TATATCTTATGTATATATTTT
98558593 TTATATATGT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
45 8 0.14
46 5 0.09
47 26 0.45
48 14 0.24
49 5 0.09
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.57
Consensus pattern (49 bp):
TATATCTTATGTATATATTTTAATACTATATTATATATGTATTTTCATA
Found at i:98558631 original size:41 final size:43
Alignment explanation
Indices: 98558585--98558702 Score: 118
Period size: 41 Copynumber: 2.7 Consensus size: 43
98558575 ATCTTATGTA
*
98558585 TATATTTTTTATATATGTTATGTACATAATTTT-T-TTAATA-T
1 TATATTTTTTATATATATTATGTACAT-ATTTTATATTAATAGT
* *
98558626 TATATTTTTT-TATATTATTATGTATATATTTTAATATTACTAGT
1 TATATTTTTTATATA-TATTATGTACATATTTT-ATATTAATAGT
* *
98558670 TATATTTTTTTATACTATTTTATGTATATATTT
1 TATA-TTTTTTATA-TATATTATGTACATATTT
98558703 CAAACACTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
40 9 0.14
41 20 0.31
42 1 0.02
43 5 0.08
44 5 0.08
45 6 0.09
46 17 0.26
47 2 0.03
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.63
Consensus pattern (43 bp):
TATATTTTTTATATATATTATGTACATATTTTATATTAATAGT
Found at i:98558646 original size:18 final size:16
Alignment explanation
Indices: 98558613--98558643 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
98558603 TATGTACATA
98558613 ATTTTTTTAATATTAT
1 ATTTTTTTAATATTAT
98558629 ATTTTTTT-ATATTAT
1 ATTTTTTTAATATTAT
98558644 TATGTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTTTTAATATTAT
Found at i:98558693 original size:46 final size:41
Alignment explanation
Indices: 98558583--98558702 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 41
98558573 TTATCTTATG
* *
98558583 TATATATTTTTTATATATGTTATGTACATAATTTTTTTAATAT
1 TATAT-TTTTTTATATATATTATGTATAT-ATTTTTTTAATAT
*
98558626 TATATTTTTTTATAT-TATTATGTATATATTTTAATATTACTAGT
1 TATATTTTTTTATATATATTATGTATATATTTT--T-TTAATA-T
*
98558670 TATATTTTTTTATACTATTTTATGTATATATTT
1 TATATTTTTTTATA-TATATTATGTATATATTT
98558703 CAAACACTAT
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
40 5 0.07
41 10 0.15
42 11 0.16
43 10 0.15
44 15 0.22
45 1 0.01
46 15 0.22
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (41 bp):
TATATTTTTTTATATATATTATGTATATATTTTTTTAATAT
Found at i:98558884 original size:20 final size:21
Alignment explanation
Indices: 98558859--98558902 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
98558849 TTATTTCTAA
98558859 TATGTATATA-TCTT-TAATAC
1 TATGTATATACT-TTGTAATAC
98558879 TATGTATATACTTTGTAATAC
1 TATGTATATACTTTGTAATAC
98558900 TAT
1 TAT
98558903 TATTATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (21 bp):
TATGTATATACTTTGTAATAC
Found at i:98559293 original size:7 final size:7
Alignment explanation
Indices: 98559283--98559349 Score: 53
Period size: 7 Copynumber: 8.9 Consensus size: 7
98559273 AAACCCTTAC
98559283 AAACCCA
1 AAACCCA
98559290 AAACCCA
1 AAACCCA
* *
98559297 ATACACA
1 AAACCCA
*
98559304 GAAGCCCA
1 -AAACCCA
*
98559312 AACCCCTCA
1 AA-ACC-CA
98559321 CAAACCCA
1 -AAACCCA
98559329 AAACCCA
1 AAACCCA
98559336 AAACCCCA
1 AAA-CCCA
98559344 AAACCC
1 AAACCC
98559350 TAATCAACCG
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
7 27 0.56
8 15 0.31
9 4 0.08
10 2 0.04
ACGTcount: A:0.49, C:0.45, G:0.03, T:0.03
Consensus pattern (7 bp):
AAACCCA
Found at i:98559344 original size:32 final size:32
Alignment explanation
Indices: 98559290--98559350 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
98559280 TACAAACCCA
* * * *
98559290 AAACCCAATACACAGAAGCCCAAACCCCTCAC
1 AAACCCAAAACACAAAACCCCAAAACCCTCAC
*
98559322 AAACCCAAAACCCAAAACCCCAAAACCCT
1 AAACCCAAAACACAAAACCCCAAAACCCT
98559351 AATCAACCGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.48, C:0.44, G:0.03, T:0.05
Consensus pattern (32 bp):
AAACCCAAAACACAAAACCCCAAAACCCTCAC
Found at i:98559974 original size:18 final size:17
Alignment explanation
Indices: 98559947--98559982 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
98559937 CCCTCCCCTC
98559947 TCCCCTCTCTCCTTTCT
1 TCCCCTCTCTCCTTTCT
*
98559964 TCCCTCTCTCTCTTTTCT
1 TCCC-CTCTCTCCTTTCT
98559982 T
1 T
98559983 TTTTTTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (17 bp):
TCCCCTCTCTCCTTTCT
Found at i:98560462 original size:3 final size:3
Alignment explanation
Indices: 98560454--98560500 Score: 85
Period size: 3 Copynumber: 15.3 Consensus size: 3
98560444 TGTATTTCCA
98560454 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
98560500 T
1 T
98560501 GTATATTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:98566441 original size:17 final size:21
Alignment explanation
Indices: 98566399--98566441 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
98566389 GATTGGAAAA
98566399 TGAAATATACTTGTTTTGGCT
1 TGAAATATACTTGTTTTGGCT
98566420 TGAAATA-A-TTG-TTTGG-T
1 TGAAATATACTTGTTTTGGCT
98566437 TGAAA
1 TGAAA
98566442 ATTTTTAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.27
18 5 0.23
19 3 0.14
20 1 0.05
21 7 0.32
ACGTcount: A:0.30, C:0.05, G:0.21, T:0.44
Consensus pattern (21 bp):
TGAAATATACTTGTTTTGGCT
Found at i:98566443 original size:18 final size:20
Alignment explanation
Indices: 98566399--98566443 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
98566389 GATTGGAAAA
*
98566399 TGAAATATACTTGTTTTGGCT
1 TGAAA-ATAATTGTTTTGGCT
98566420 TG-AAATAATTG-TTTGG-T
1 TGAAAATAATTGTTTTGGCT
98566437 TGAAAAT
1 TGAAAAT
98566444 TTTTAGGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 3 0.14
18 9 0.41
19 6 0.27
20 2 0.09
21 2 0.09
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.44
Consensus pattern (20 bp):
TGAAAATAATTGTTTTGGCT
Found at i:98567627 original size:18 final size:18
Alignment explanation
Indices: 98567577--98567627 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
98567567 ACAGCTTGTA
98567577 TGCATGCTGCAGCAATTG
1 TGCATGCTGCAGCAATTG
98567595 TGCATGCTGCAGCAATTG
1 TGCATGCTGCAGCAATTG
*
98567613 TGCATGTTGCAGCAA
1 TGCATGCTGCAGCAA
98567628 CATATTTTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (18 bp):
TGCATGCTGCAGCAATTG
Found at i:98569480 original size:14 final size:14
Alignment explanation
Indices: 98569461--98569489 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
98569451 CTACAAAAAG
98569461 AAAAAAAAAGGCAA
1 AAAAAAAAAGGCAA
98569475 AAAAAAAAAGGCAA
1 AAAAAAAAAGGCAA
98569489 A
1 A
98569490 CAAACATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGGCAA
Found at i:98581302 original size:13 final size:14
Alignment explanation
Indices: 98581281--98581313 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98581271 TTTATTAATG
98581281 AAATATATTAAA-AT
1 AAAT-TATTAAATAT
98581295 AAATTATTAAATAT
1 AAATTATTAAATAT
98581309 AAATT
1 AAATT
98581314 TATATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATTATTAAATAT
Found at i:98582406 original size:22 final size:22
Alignment explanation
Indices: 98582376--98582420 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
98582366 ATTGTATGAT
*
98582376 TTATGAAT-GCATGATAATTGCA
1 TTATGAATGGCATGA-AAATGCA
*
98582398 TTATTAATGGCATGAAAATGCA
1 TTATGAATGGCATGAAAATGCA
98582420 T
1 T
98582421 GAAATGCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (22 bp):
TTATGAATGGCATGAAAATGCA
Found at i:98586116 original size:30 final size:29
Alignment explanation
Indices: 98586075--98586138 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
98586065 ATGAATCGGA
*
98586075 AGCTTTAGCACTAAGTGTGCGATTTAAACT
1 AGCTTTAGCACTAAGTGTGCAATTT-AACT
*
98586105 AGCTTTGGCACTAAGTGTGCAATTTAACT
1 AGCTTTAGCACTAAGTGTGCAATTTAACT
98586134 AGCTT
1 AGCTT
98586139 CGGCTACTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (29 bp):
AGCTTTAGCACTAAGTGTGCAATTTAACT
Found at i:98595175 original size:136 final size:136
Alignment explanation
Indices: 98594931--98595202 Score: 456
Period size: 136 Copynumber: 2.0 Consensus size: 136
98594921 TCTTTTCAAG
* *
98594931 CTTGAAAGTAAGTCAATCTTAGCCCTATTTTTAATGTTCTTTATGTTTTTGAGATCTTTGAAACA
1 CTTGAAAGTAAGTCAATCCTAGCCCCATTTTTAATGTTCTTTATGTTTTTGAGATCTTTGAAACA
*
98594996 TGATCTAACTATTTATACCATTATTTTGAGCTAGGGTTCATGTTCAAAA-ACTTACCCATATGTG
66 TGATCTAACTATTTATACCATTATTTTGAGCTAGGGTTCATGTT-AAAATACTTAACCATATGTG
98595060 ACATGCA
130 ACATGCA
* * *
98595067 CTTGAAAGTAAGTTAATCCTAGCCCCGTTTTTAATGTTCTTTATGTTTTTGAGATCTTTGAAGCA
1 CTTGAAAGTAAGTCAATCCTAGCCCCATTTTTAATGTTCTTTATGTTTTTGAGATCTTTGAAACA
* *
98595132 TGATCTAGCTATTTATACCATTATTTTGAGCTAGGGTTCATGTTAAAATACTTAACCATGTGTGA
66 TGATCTAACTATTTATACCATTATTTTGAGCTAGGGTTCATGTTAAAATACTTAACCATATGTGA
98595197 CATGCA
131 CATGCA
98595203 AGTATTTTGG
Statistics
Matches: 127, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
135 4 0.03
136 123 0.97
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (136 bp):
CTTGAAAGTAAGTCAATCCTAGCCCCATTTTTAATGTTCTTTATGTTTTTGAGATCTTTGAAACA
TGATCTAACTATTTATACCATTATTTTGAGCTAGGGTTCATGTTAAAATACTTAACCATATGTGA
CATGCA
Found at i:98601824 original size:15 final size:15
Alignment explanation
Indices: 98601804--98601834 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
98601794 AACGGGACAG
98601804 AAAAAGAAAGGAGAA
1 AAAAAGAAAGGAGAA
*
98601819 AAAAAGAGAGGAGAA
1 AAAAAGAAAGGAGAA
98601834 A
1 A
98601835 TTAAGGTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGGAGAA
Found at i:98604385 original size:106 final size:106
Alignment explanation
Indices: 98604200--98604437 Score: 334
Period size: 106 Copynumber: 2.3 Consensus size: 106
98604190 ACGGGCAGTG
* * * **
98604200 ACACAGGCGTGTCTCTCAGCCGTGTGTGACACAAGGTCATGTTGCACTACCATGTGTCCCCTGGG
1 ACACAGGCGTGTGTCTCAGCCGTGTGCGACACAAGGTCATATTGCAAGACCATGTGTCCCCTGGG
* *
98604265 GTACCCTACGATTTTAAGTCAGCCTTTAACACGGCCAAGGC
66 GTACCCTACGATTTTAAATCAGCCTTGAACACGGCCAAGGC
* * * * *
98604306 ACACAGGCGTGTGTCTCAGCTGTGTGCGATACATGGTCATATTGCAAGGCCGTGTGTCCCCTGGG
1 ACACAGGCGTGTGTCTCAGCCGTGTGCGACACAAGGTCATATTGCAAGACCATGTGTCCCCTGGG
* *
98604371 GTACCCTACGATTTTAAATCAGTCTTGAACACGGCTAAGGC
66 GTACCCTACGATTTTAAATCAGCCTTGAACACGGCCAAGGC
*
98604412 ACACAGGCGTGTGGCT-AGCCGTGTGC
1 ACACAGGCGTGTGTCTCAGCCGTGTGC
98604438 CCCAAGTCAG
Statistics
Matches: 116, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
105 9 0.08
106 107 0.92
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (106 bp):
ACACAGGCGTGTGTCTCAGCCGTGTGCGACACAAGGTCATATTGCAAGACCATGTGTCCCCTGGG
GTACCCTACGATTTTAAATCAGCCTTGAACACGGCCAAGGC
Found at i:98610841 original size:44 final size:44
Alignment explanation
Indices: 98610743--98610872 Score: 126
Period size: 44 Copynumber: 3.0 Consensus size: 44
98610733 ACATAGGATC
* * * * *
98610743 CGATATGTG-TTTTCGTGTAAGACCATGCCTGGGACATTGGCAT
1 CGATATATGATTTACGTGTAAGACCCTGTCTGGGACAGTGGCAT
98610786 CGACT-TATGATTTACGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGA-TATATGATTTACGTGTAAGACCCTGTCTGGGACAGTGGCAT
* * *
98610830 CGATATTTGA-TTACATGTAATACCAC-GTCTGGGAC-GCTGGCAT
1 CGATATATGATTTACGTGTAAGACC-CTGTCTGGGACAG-TGGCAT
98610873 TGTACGAGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
42 1 0.01
43 34 0.46
44 39 0.53
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (44 bp):
CGATATATGATTTACGTGTAAGACCCTGTCTGGGACAGTGGCAT
Found at i:98612010 original size:55 final size:55
Alignment explanation
Indices: 98611894--98612013 Score: 127
Period size: 55 Copynumber: 2.2 Consensus size: 55
98611884 CCCTATGATT
* *
98611894 TTAAGTCAGCCTTGAACACGGCCAAGGCACACGGGCATGTGGCTAGCCGTGTGAC
1 TTAAGTCAGTCTTGAACACAGCCAAGGCACACGGGCATGTGGCTAGCCGTGTGAC
** * * * * *
98611949 CCAAGTCAGTTTTGACCACAGCCAAGGCACAGGGGCATGTCTTG-TGGCCGTGTGA-
1 TTAAGTCAGTCTTGAACACAGCCAAGGCACACGGGCATG--TGGCTAGCCGTGTGAC
98612004 TTAAGTCAGT
1 TTAAGTCAGT
98612014 ATGTATGCCC
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
55 40 0.77
56 10 0.19
57 2 0.04
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (55 bp):
TTAAGTCAGTCTTGAACACAGCCAAGGCACACGGGCATGTGGCTAGCCGTGTGAC
Found at i:98612781 original size:16 final size:17
Alignment explanation
Indices: 98612749--98612781 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
98612739 TGGATTTATA
98612749 TGAAATAGTGAATATTG
1 TGAAATAGTGAATATTG
*
98612766 TGAAAT-GTGGATATTG
1 TGAAATAGTGAATATTG
98612782 AATATTGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (17 bp):
TGAAATAGTGAATATTG
Found at i:98618484 original size:39 final size:39
Alignment explanation
Indices: 98618441--98618526 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
98618431 TTTAGTAATT
* * * *
98618441 TTAGTTTGTGTCTTTAATTATGTCATAGTTTGAATATCA
1 TTAGTATGAGTCTTTAATTATGTCATAGTATGAACATCA
98618480 TTAGTATGAGTCTTTAATTATGTCATAGTATGAACATCA
1 TTAGTATGAGTCTTTAATTATGTCATAGTATGAACATCA
*
98618519 TTAATATG
1 TTAGTATG
98618527 TGTTTTGCAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (39 bp):
TTAGTATGAGTCTTTAATTATGTCATAGTATGAACATCA
Found at i:98618836 original size:24 final size:24
Alignment explanation
Indices: 98618809--98618857 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
98618799 GTATGTGTGT
98618809 TTATAGTGTGATGATTCTTATGAG
1 TTATAGTGTGATGATTCTTATGAG
*
98618833 TTATAGTGTGCTGATTCTTATGAG
1 TTATAGTGTGATGATTCTTATGAG
98618857 T
1 T
98618858 GTCTTTAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.06, G:0.24, T:0.47
Consensus pattern (24 bp):
TTATAGTGTGATGATTCTTATGAG
Found at i:98628042 original size:45 final size:45
Alignment explanation
Indices: 98627983--98628075 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
98627973 GTACTTTCCT
98627983 TTTATTATAGCGAAATCTTCTTTTGCTAGCGATTTTTTATCTTTC
1 TTTATTATAGCGAAATCTTCTTTTGCTAGCGATTTTTTATCTTTC
98628028 TTTATTATAGCGAAATCTTCTTTTGCTAGCGATTTTTTATCTTTC
1 TTTATTATAGCGAAATCTTCTTTTGCTAGCGATTTTTTATCTTTC
98628073 TTT
1 TTT
98628076 TTAAGAATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.19, C:0.15, G:0.11, T:0.55
Consensus pattern (45 bp):
TTTATTATAGCGAAATCTTCTTTTGCTAGCGATTTTTTATCTTTC
Found at i:98632248 original size:29 final size:28
Alignment explanation
Indices: 98632198--98632269 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 28
98632188 TATTTTTAAT
*
98632198 TTATC-TAATTATATTTAATAATTATATATA
1 TTATCTTAATT-TTTTTAATAA-TA-ATATA
98632228 TT-T-TTAATTTTTTTAATTAATAATATA
1 TTATCTTAATTTTTTTAA-TAATAATATA
98632255 TTATCTTAATTTTTT
1 TTATCTTAATTTTTT
98632270 AGTACAACTT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
27 7 0.19
28 9 0.24
29 19 0.51
30 2 0.05
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (28 bp):
TTATCTTAATTTTTTTAATAATAATATA
Found at i:98639318 original size:29 final size:29
Alignment explanation
Indices: 98639262--98639319 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
98639252 AGTTATACAA
98639262 TAAATTTTTATAAATAAAAAATACATAAAC
1 TAAATTTTTATAAATAAAAAATA-ATAAAC
**
98639292 TAAATTTTATATTTATAAAAAAT-ATAAA
1 TAAATTTT-TATAAATAAAAAATAATAAA
98639320 AAATTATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 8 0.32
31 12 0.48
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (29 bp):
TAAATTTTTATAAATAAAAAATAATAAAC
Found at i:98640148 original size:16 final size:17
Alignment explanation
Indices: 98640115--98640151 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
98640105 ATATCTCGTT
*
98640115 AAAA-TTTAATTTTTAA
1 AAAATTTTAATTTTAAA
98640131 AAAATTTTAA-TTTAAA
1 AAAATTTTAATTTTAAA
98640147 AAAAT
1 AAAAT
98640152 ATAAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
AAAATTTTAATTTTAAA
Found at i:98649570 original size:80 final size:80
Alignment explanation
Indices: 98649437--98649597 Score: 295
Period size: 80 Copynumber: 2.0 Consensus size: 80
98649427 TCAAATTGTT
98649437 AATATAATTTTACAAATTAAGTGACTTAGCCCAAATACAATCCCTGTGGAGACGATAACTCGATA
1 AATATAATTTTACAAATTAAGTGACTTAGCCCAAATACAATCCCTGTGGAGACGATAACTCGATA
98649502 CTTACGTATTACTTG
66 CTTACGTATTACTTG
* *
98649517 AATATAATTTTACAAATTAAGTGACTTAGCCCAAATACAATCCTTGTGGAGACGATAACTTGATA
1 AATATAATTTTACAAATTAAGTGACTTAGCCCAAATACAATCCCTGTGGAGACGATAACTCGATA
*
98649582 CTTACTTATTACTTG
66 CTTACGTATTACTTG
98649597 A
1 A
98649598 TAACAACTGT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (80 bp):
AATATAATTTTACAAATTAAGTGACTTAGCCCAAATACAATCCCTGTGGAGACGATAACTCGATA
CTTACGTATTACTTG
Found at i:98649996 original size:18 final size:20
Alignment explanation
Indices: 98649963--98650010 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
98649953 TCTCAATCAA
* *
98649963 ATAAAAAGTAATTTATTCG-
1 ATAAACAGTAACTTATTCGT
98649982 AT-AACAGTAACTTATTCGT
1 ATAAACAGTAACTTATTCGT
98650001 ATAAACAGTA
1 ATAAACAGTA
98650011 CTTCATCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 14 0.56
19 4 0.16
20 7 0.28
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (20 bp):
ATAAACAGTAACTTATTCGT
Found at i:98655765 original size:28 final size:28
Alignment explanation
Indices: 98655709--98655761 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
98655699 CGACGGCCAG
* * *
98655709 GAAAAAGAGAAGAAAAATAAAGATTAGA
1 GAAAAAGAGAAGAAAAAGAAACATAAGA
98655737 GAAAAAGA-AAGAAAAAGAAACATAA
1 GAAAAAGAGAAGAAAAAGAAACATAA
98655762 AGAGGACTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.72, C:0.02, G:0.19, T:0.08
Consensus pattern (28 bp):
GAAAAAGAGAAGAAAAAGAAACATAAGA
Found at i:98657340 original size:39 final size:39
Alignment explanation
Indices: 98657286--98657362 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
98657276 CACATAGCAT
* *
98657286 TTCAATTCAATCCATTCTAGCCACATATGGCAGATTCAA
1 TTCAATTCAATCCATTCTAGCCACATATGCCAAATTCAA
*
98657325 TTCAATTCAATCCATTCTAGCCATATATGCCAAATTCA
1 TTCAATTCAATCCATTCTAGCCACATATGCCAAATTCA
98657363 CTAATATCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (39 bp):
TTCAATTCAATCCATTCTAGCCACATATGCCAAATTCAA
Done.