Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 303 of 333
Found at i:99775349 original size:29 final size:30
Alignment explanation
Indices: 99775292--99775355 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
99775282 ATATCAAAAC
**
99775292 TATATATGAACTTTGATTTAATGTATAATTG
1 TATATATGAACTACGATTT-ATGTATAATTG
* *
99775323 TATATATGAACTACGATTT-TGTGTAATTT
1 TATATATGAACTACGATTTATGTATAATTG
99775352 TATA
1 TATA
99775356 CATAAAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 12 0.41
31 17 0.59
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.48
Consensus pattern (30 bp):
TATATATGAACTACGATTTATGTATAATTG
Found at i:99778282 original size:15 final size:15
Alignment explanation
Indices: 99778262--99778318 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
99778252 CGATGAATTT
99778262 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
99778277 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
99778292 ATTGAATTTATATTG
1 ATTGAATTTATATTG
99778307 ATTGAA-TTATAT
1 ATTGAATTTATAT
99778319 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:99778755 original size:21 final size:21
Alignment explanation
Indices: 99778688--99778773 Score: 118
Period size: 21 Copynumber: 4.1 Consensus size: 21
99778678 GGCTTTATCG
99778688 ATTAGGCACCTCGTGTGTCGT
1 ATTAGGCACCTCGTGTGTCGT
*
99778709 ATCAGGCACCTCGTGTGTCGT
1 ATTAGGCACCTCGTGTGTCGT
*
99778730 ATTAGGCACCTCGTGTGTAGT
1 ATTAGGCACCTCGTGTGTCGT
* * **
99778751 TTTAGGCACTTTATGTGTCGT
1 ATTAGGCACCTCGTGTGTCGT
99778772 AT
1 AT
99778774 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.16, C:0.21, G:0.27, T:0.36
Consensus pattern (21 bp):
ATTAGGCACCTCGTGTGTCGT
Found at i:99797583 original size:20 final size:21
Alignment explanation
Indices: 99797554--99797594 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
99797544 ATTAAACTTA
*
99797554 TAAAATTA-TTATGTATTTTT
1 TAAAAATATTTATGTATTTTT
*
99797574 TAAAAATATTTATTTATTTTT
1 TAAAAATATTTATGTATTTTT
99797595 AATATTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
TAAAAATATTTATGTATTTTT
Found at i:99800223 original size:5 final size:5
Alignment explanation
Indices: 99800213--99800253 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
99800203 TGCCTTTGGT
*
99800213 TTTTA TTTTA TTTTA TTTATA TTTTA TTATA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTT-TA TTTTA TTTTA TTTTA TTTTA
99800254 ATGACTCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 28 0.85
6 5 0.15
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:99807812 original size:27 final size:27
Alignment explanation
Indices: 99807782--99807834 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
99807772 TTTATCGAGG
* *
99807782 TTATTAGTTTATCGATGAATGAATATT
1 TTATTAATTTATCGATAAATGAATATT
* *
99807809 TTATTAATTTATTGATAAATTAATAT
1 TTATTAATTTATCGATAAATGAATAT
99807835 ATATTTATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (27 bp):
TTATTAATTTATCGATAAATGAATATT
Found at i:99812225 original size:93 final size:93
Alignment explanation
Indices: 99812113--99812285 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
99812103 CGCCCATAAG
* *
99812113 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACACTCGCATCCATAAATGAACTCGGACTCAACTC
99812177 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* *
99812206 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAATGAACTCGGACTCAACTCA
*
99812271 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
99812286 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:99812281 original size:46 final size:46
Alignment explanation
Indices: 99812114--99812281 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
99812104 GCCCATAAGC
** *
99812114 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAAT
* * * * ** *
99812160 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCATCCAT-AAAT
*
99812207 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
*
99812253 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
99812282 TGCCCAAATA
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
45 2 0.02
46 63 0.63
47 35 0.35
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
Found at i:99813707 original size:15 final size:14
Alignment explanation
Indices: 99813659--99813743 Score: 71
Period size: 15 Copynumber: 5.8 Consensus size: 14
99813649 CAAAGATAAC
* *
99813659 AAGAAAACCGAATA
1 AAGAAATCCAAATA
99813673 AAGAAATCCAAGATA
1 AAGAAATCCAA-ATA
* *
99813688 GAGAAACTCGAAATA
1 AAGAAA-TCCAAATA
99813703 AAGAAATCCAGAATA
1 AAGAAATCCA-AATA
* *
99813718 AAGAGATCCAGGATA
1 AAGAAATCCA-AATA
*
99813733 AAGAAACCCAA
1 AAGAAATCCAA
99813744 GATACGCTAC
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
14 12 0.21
15 41 0.72
16 4 0.07
ACGTcount: A:0.58, C:0.15, G:0.16, T:0.11
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:99813747 original size:15 final size:15
Alignment explanation
Indices: 99813670--99813747 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
99813660 AGAAAACCGA
99813670 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
99813685 ATAGAGAAACTCGAA-
1 ATAAAGAAA-TCCAAG
99813700 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
99813714 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
99813730 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
99813745 ATA
1 ATA
99813748 CGCTACTATG
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
13 1 0.02
14 2 0.04
15 42 0.84
16 5 0.10
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:99816813 original size:93 final size:93
Alignment explanation
Indices: 99816683--99816855 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
99816673 CGCCCATAAG
* * *
99816683 CGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCGCTCGCATCCATAAATGAACTCGGACTCAACTCA
99816748 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
99816776 CGAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCATCCATAAATGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGCTCGCATCCATAAATGAACTCGGACTCAACTC
*
99816840 AACGAGTTCGGATGCC
65 AACGAGCTCGGATGCC
99816856 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCGCTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:99816846 original size:46 final size:46
Alignment explanation
Indices: 99816684--99816851 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
99816674 GCCCATAAGC
* * *
99816684 GAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAAT
* * * * ** *
99816730 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCATCCAT-AAAT
*
99816777 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
*
99816823 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
99816852 TGCCCAAATA
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
45 2 0.02
46 63 0.63
47 35 0.35
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
Found at i:99821388 original size:22 final size:22
Alignment explanation
Indices: 99821361--99821405 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
99821351 TTACCAGTAG
99821361 CACTGAAAATATAATACTGGAA
1 CACTGAAAATATAATACTGGAA
99821383 CACTGAAAATATAATACTGGAA
1 CACTGAAAATATAATACTGGAA
99821405 C
1 C
99821406 GATATTGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.16, G:0.13, T:0.22
Consensus pattern (22 bp):
CACTGAAAATATAATACTGGAA
Found at i:99826592 original size:16 final size:15
Alignment explanation
Indices: 99826573--99826640 Score: 50
Period size: 16 Copynumber: 4.4 Consensus size: 15
99826563 TTTTATGTGT
99826573 TATAAATTACATA-AGA
1 TATAAATTA-ATATA-A
99826589 TATAAATTTAATATAA
1 TATAAA-TTAATATAA
* * **
99826605 TATAAATTATTTTTT
1 TATAAATTAATATAA
99826620 TGATAAA-TAATATAA
1 T-ATAAATTAATATAA
99826635 TATAAA
1 TATAAA
99826641 ATATTACAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
14 5 0.12
15 11 0.27
16 21 0.51
17 4 0.10
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (15 bp):
TATAAATTAATATAA
Found at i:99826874 original size:4 final size:4
Alignment explanation
Indices: 99826865--99826969 Score: 75
Period size: 4 Copynumber: 25.2 Consensus size: 4
99826855 GTTGGATAAC
* ** * * * *
99826865 GGGA GGGA GGGA GGGA GGGA AGGA AAGA GGGA GAGA GAGA GAGA GAGA
1 GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA
* * * *
99826913 GAGA GGGA GGGA GGGA GATAGA GGGA GGGA GGGA GATAGA GGGA GCGA
1 GGGA GGGA GGGA GGGA G--GGA GGGA GGGA GGGA G--GGA GGGA GGGA
99826961 GGGA GGGA G
1 GGGA GGGA G
99826970 AGAGAGAGAG
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
4 79 0.93
6 6 0.07
ACGTcount: A:0.35, C:0.01, G:0.62, T:0.02
Consensus pattern (4 bp):
GGGA
Found at i:99826878 original size:8 final size:8
Alignment explanation
Indices: 99826867--99826977 Score: 87
Period size: 8 Copynumber: 13.4 Consensus size: 8
99826857 TGGATAACGG
*
99826867 GAGGGAGG
1 GAGGGAGA
*
99826875 GAGGGAGG
1 GAGGGAGA
* *
99826883 GAAGGAAA
1 GAGGGAGA
99826891 GAGGGAGA
1 GAGGGAGA
*
99826899 GAGAGAGA
1 GAGGGAGA
*
99826907 GAGAGAGA
1 GAGGGAGA
*
99826915 GAGGGAGG
1 GAGGGAGA
99826923 GAGGGAGATA
1 GAGGGAG--A
*
99826933 GAGGGAGG
1 GAGGGAGA
99826941 GAGGGAGATA
1 GAGGGAG--A
*
99826951 GAGGGAGC
1 GAGGGAGA
*
99826959 GAGGGAGG
1 GAGGGAGA
*
99826967 GAGAGAGA
1 GAGGGAGA
99826975 GAG
1 GAG
99826978 AGAGGAAGAC
Statistics
Matches: 84, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
8 70 0.83
10 14 0.17
ACGTcount: A:0.37, C:0.01, G:0.60, T:0.02
Consensus pattern (8 bp):
GAGGGAGA
Found at i:99826916 original size:18 final size:18
Alignment explanation
Indices: 99826895--99826979 Score: 80
Period size: 18 Copynumber: 4.7 Consensus size: 18
99826885 AGGAAAGAGG
*
99826895 GAGAGAGAGAGAGAGAGA
1 GAGAGAGAGAGAGGGAGA
* *
99826913 GAGAGGGAGGGAGGGAGA
1 GAGAGAGAGAGAGGGAGA
* * *
99826931 TAGAGGGAGGGAGGGAGA
1 GAGAGAGAGAGAGGGAGA
* * * *
99826949 TAGAGGGAGCGAGGGAGG
1 GAGAGAGAGAGAGGGAGA
99826967 GAGAGAGAGAGAG
1 GAGAGAGAGAGAG
99826980 AGGAAGACGA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 58 1.00
ACGTcount: A:0.38, C:0.01, G:0.59, T:0.02
Consensus pattern (18 bp):
GAGAGAGAGAGAGGGAGA
Found at i:99826974 original size:4 final size:4
Alignment explanation
Indices: 99826890--99826981 Score: 67
Period size: 4 Copynumber: 23.0 Consensus size: 4
99826880 AGGGAAGGAA
* * * * * *
99826890 AGAG GGAG AGAG AGAG AGAG AGAG AGAG GGAG GGAG GGAG ATAG AGGG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * *
99826938 AGGG AGGG AGAT AGAG GGAG CGAG GGAG GGAG AGAG AGAG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
99826982 GAAGACGAAG
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 74 1.00
ACGTcount: A:0.38, C:0.01, G:0.59, T:0.02
Consensus pattern (4 bp):
AGAG
Found at i:99826996 original size:3 final size:3
Alignment explanation
Indices: 99826982--99827015 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
99826972 AGAGAGAGAG
*
99826982 GAA GAC GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
99827016 GAAAAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.62, C:0.03, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:99832466 original size:24 final size:23
Alignment explanation
Indices: 99832416--99832469 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
99832406 AATCAAATAA
** *
99832416 AAATTAATTAACCGAAATAACAT
1 AAATTAATTAAAAGAAATAACAC
99832439 AAATTAATTAAAAGTAAATAACAC
1 AAATTAATTAAAAG-AAATAACAC
99832463 AAATTAA
1 AAATTAA
99832470 CAATCGAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (23 bp):
AAATTAATTAAAAGAAATAACAC
Found at i:99834373 original size:24 final size:24
Alignment explanation
Indices: 99834346--99834400 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
99834336 CCGATATATA
*
99834346 AGCTTCCTAATTATGGCTCTTATG
1 AGCTTCCTAATTATGACTCTTATG
*
99834370 AGCTTCCTGATTATGACTCTTATG
1 AGCTTCCTAATTATGACTCTTATG
*
99834394 AACTTCC
1 AGCTTCC
99834401 CATTATATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.40
Consensus pattern (24 bp):
AGCTTCCTAATTATGACTCTTATG
Found at i:99835934 original size:18 final size:17
Alignment explanation
Indices: 99835908--99835969 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 17
99835898 TAGATTTTTT
*
99835908 TTAAATATATTATT-TAA
1 TTAATTATATTATTAT-A
99835925 TTAGATTATATTATTATA
1 TTA-ATTATATTATTATA
* *
99835943 TTAATTATATCATAATA
1 TTAATTATATTATTATA
99835960 TTATATTATA
1 TTA-ATTATA
99835970 AAATAAATCA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
17 18 0.46
18 20 0.51
19 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (17 bp):
TTAATTATATTATTATA
Found at i:99835948 original size:22 final size:22
Alignment explanation
Indices: 99835914--99835967 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
99835904 TTTTTTAAAT
*
99835914 ATATTAT-TTAATTAGATTATA
1 ATATTATATTAATTAGATCATA
* *
99835935 TTATTATATTAATTATATCATA
1 ATATTATATTAATTAGATCATA
99835957 ATATTATATTA
1 ATATTATATTA
99835968 TAAAATAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
ATATTATATTAATTAGATCATA
Found at i:99836836 original size:3 final size:3
Alignment explanation
Indices: 99836828--99836855 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
99836818 ATGAGGTAAC
99836828 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
99836856 GAGATTAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:99848661 original size:67 final size:67
Alignment explanation
Indices: 99848549--99848685 Score: 247
Period size: 67 Copynumber: 2.0 Consensus size: 67
99848539 TCCCTCCTCT
* *
99848549 AATAGGTTTTGGTTTTAGAATTAACCCAATTGGAAATGTAGCATTGTTACATGAATATAGAAATC
1 AATAGGTTTTGGTTTCAGAATTAACCCAATTGGAAATGTAACATTGTTACATGAATATAGAAATC
99848614 AA
66 AA
*
99848616 AATAGGTTTTGGTTTCAGAATTAACCCAATTGGGAATGTAACATTGTTACATGAATATAGAAATC
1 AATAGGTTTTGGTTTCAGAATTAACCCAATTGGAAATGTAACATTGTTACATGAATATAGAAATC
99848681 AA
66 AA
99848683 AAT
1 AAT
99848686 GGGGTTTCTT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (67 bp):
AATAGGTTTTGGTTTCAGAATTAACCCAATTGGAAATGTAACATTGTTACATGAATATAGAAATC
AA
Found at i:99849554 original size:62 final size:62
Alignment explanation
Indices: 99849457--99849581 Score: 225
Period size: 62 Copynumber: 2.0 Consensus size: 62
99849447 ACATAGGCAG
*
99849457 AAGAGCTGAAAACCAACATATTCAGCATGAAAATAAAGAATGACCTCTTCTTTTTTTCAAAA
1 AAGAGCTGAAAACCAACATATTCAGCATGAAAATAAAGAATAACCTCTTCTTTTTTTCAAAA
99849519 AAGAGCTGAAAACCAACATATTCAGCACT-AAAATAAAGAATAACCTCTTCTTTTTTTCAAAA
1 AAGAGCTGAAAACCAACATATTCAGCA-TGAAAATAAAGAATAACCTCTTCTTTTTTTCAAAA
99849581 A
1 A
99849582 CGTCCTTACA
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
62 60 0.98
63 1 0.02
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (62 bp):
AAGAGCTGAAAACCAACATATTCAGCATGAAAATAAAGAATAACCTCTTCTTTTTTTCAAAA
Found at i:99852790 original size:46 final size:48
Alignment explanation
Indices: 99852686--99852805 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
99852676 TGTCTTCGAC
* * *
99852686 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGATCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
99852734 ATGGGCTTACATGGGTCATTCCTGTCTCCAAAGCCATATA-AT-TGAT
1 ATGGACTTACATGGATCATTCCTGTCTCCAAAGCCATATATATATAAT
* *
99852780 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGATCATTCCTGTC
99852806 CTGTCCTATC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 26 0.41
47 2 0.03
48 35 0.56
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGATCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:99856352 original size:18 final size:18
Alignment explanation
Indices: 99856329--99856366 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
99856319 GAGTCGGTTA
99856329 CATACGAGGAAGGATTAG
1 CATACGAGGAAGGATTAG
99856347 CATACGAGGAAGGATTAG
1 CATACGAGGAAGGATTAG
99856365 CA
1 CA
99856367 CCCTCGCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.13, G:0.32, T:0.16
Consensus pattern (18 bp):
CATACGAGGAAGGATTAG
Found at i:99857166 original size:22 final size:21
Alignment explanation
Indices: 99857131--99857225 Score: 74
Period size: 18 Copynumber: 4.7 Consensus size: 21
99857121 AAAAGGTATC
* *
99857131 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
99857152 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
99857175 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
99857194 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
99857212 TGCATATCATATCT
1 TACAAATCATATCT
99857226 AAGATTGCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
18 17 0.27
19 17 0.27
21 4 0.06
22 15 0.24
23 10 0.16
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:99857174 original size:23 final size:22
Alignment explanation
Indices: 99857131--99857188 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
99857121 AAAAGGTATC
* *
99857131 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
99857152 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
99857175 TGCATATCATATCT
1 TACAAATCATATCT
99857189 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:99857191 original size:19 final size:19
Alignment explanation
Indices: 99857167--99857240 Score: 141
Period size: 19 Copynumber: 3.9 Consensus size: 19
99857157 AATCATATCT
99857167 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
99857186 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
99857204 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
99857223 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
99857241 TGAAGATTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.33
19 36 0.67
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:99857213 original size:37 final size:38
Alignment explanation
Indices: 99857160--99857240 Score: 141
Period size: 37 Copynumber: 2.2 Consensus size: 38
99857150 ATTACAAAAT
99857160 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
99857196 CA-ATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
99857233 CATATCAT
1 CATATCAT
99857241 TGAAGATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 31 0.74
38 5 0.12
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:99857260 original size:37 final size:37
Alignment explanation
Indices: 99857170--99857249 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
99857160 CATATCTTCT
* *
99857170 AAGATTGCATATCATATCTAAGATTGCAATCATATCT
1 AAGATTACATATCATATCTAAGATTGCAATCATATCG
*
99857207 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTACATATCATATCTAAGATTGCA-ATCATATCG
99857243 AAGATTA
1 AAGATTA
99857250 TATTTCCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
36 6 0.15
37 29 0.73
38 5 0.12
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (37 bp):
AAGATTACATATCATATCTAAGATTGCAATCATATCG
Found at i:99857648 original size:45 final size:45
Alignment explanation
Indices: 99857599--99857738 Score: 183
Period size: 45 Copynumber: 3.1 Consensus size: 45
99857589 TGCTATATTT
99857599 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTC
1 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTC
** * * *
99857644 GATCTGCTCCCCGTCTAATACAGAGACACAAAATTTGCT-TCTTC
1 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTC
* * * * *
99857688 AATCTGCTCCCTGCCTAATACAGAGATGCCAAATCTGTCATCTTG
1 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTC
99857733 GATCTG
1 GATCTG
99857739 TTTCGATGTA
Statistics
Matches: 78, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
44 35 0.45
45 43 0.55
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (45 bp):
GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTC
Found at i:99857706 original size:44 final size:45
Alignment explanation
Indices: 99857586--99857713 Score: 150
Period size: 45 Copynumber: 2.9 Consensus size: 45
99857576 AGAAGATGAT
* ** ** *
99857586 ATCTGCTATATTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACACAAA
* *
99857631 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACAAA
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACACAAA
* * *
99857676 ATTTGCT-TCTTCAATCTGCTCCCTGCCTAATACAGAGA
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGA
99857714 TGCCAAATCT
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 28 0.39
45 44 0.61
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (45 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACACAAA
Found at i:99857900 original size:78 final size:78
Alignment explanation
Indices: 99857754--99858048 Score: 412
Period size: 78 Copynumber: 3.8 Consensus size: 78
99857744 ATGTAAACAC
* * *
99857754 ATGAATGTCAGATGTACTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
99857819 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
99857832 ATGCAGGTCCA-ATCTGTTATGTCTTTGATCTGTTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
99857896 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * *
99857910 ATGAAGGTCAGATCTACTGTGTTTTCGATCTGCTTCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
99857975 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * *
99857988 ATGAATGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCTAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATC
99858049 TGTTTCCTCG
Statistics
Matches: 188, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
77 2 0.01
78 184 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:99862239 original size:46 final size:46
Alignment explanation
Indices: 99862172--99862349 Score: 202
Period size: 46 Copynumber: 3.8 Consensus size: 46
99862162 TGTAACCCGC
*
99862172 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTTGCAT
*
99862218 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG--T--TTGCAT
* * * ** *
99862268 CTC-TCA---AACTCGGACTCAACTCAACGAGTTCAGACATTTGTAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTTGCAT
*
99862311 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
99862350 CCCAAACATC
Statistics
Matches: 110, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
45 1 0.01
46 65 0.59
47 26 0.24
48 1 0.01
50 8 0.07
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTTGCAT
Found at i:99862288 original size:93 final size:93
Alignment explanation
Indices: 99862181--99862351 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
99862171 CCCATAAGTG
* ***
99862181 AACTCGGACTCAACTCAACGAGCTCGGGTGTTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
99862246 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* *
99862274 AACTCGGACTCAACTCAACGAGTTCAGACATTTGTATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
99862339 GAGTTCGGATGCC
66 GAGCTCGGATGCC
99862352 CAAACATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:99865825 original size:40 final size:40
Alignment explanation
Indices: 99865779--99865859 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
99865769 AAGTAACAAG
99865779 AATGTTTCGAGAATTACTCTGAAAAATTCCTAAAGACTAC
1 AATGTTTCGAGAATTACTCTGAAAAATTCCTAAAGACTAC
99865819 AATGTTTCGAGAATTACTCTGAAAAATTCCTAAAGACTAC
1 AATGTTTCGAGAATTACTCTGAAAAATTCCTAAAGACTAC
99865859 A
1 A
99865860 TGAAGTTCCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (40 bp):
AATGTTTCGAGAATTACTCTGAAAAATTCCTAAAGACTAC
Found at i:99869750 original size:22 final size:21
Alignment explanation
Indices: 99869715--99869790 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
99869705 AAAAGGTATC
* *
99869715 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
99869736 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
99869759 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
99869778 TGC-AATCATATCT
1 TACAAATCATATCT
99869791 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:99869807 original size:35 final size:37
Alignment explanation
Indices: 99869744--99869822 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
99869734 ATTACAAAAT
99869744 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
99869780 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
99869815 CATATCAT
1 CATATCAT
99869823 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:99869820 original size:14 final size:15
Alignment explanation
Indices: 99869765--99869820 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
99869755 AGATTGCATA
99869765 TCATATCTAAGATTG
1 TCATATCTAAGATTG
99869780 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
99869798 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
99869815 -CATATC
1 TCATATC
99869821 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:99869830 original size:17 final size:19
Alignment explanation
Indices: 99869751--99869822 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
99869741 AATCATATCT
99869751 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
99869770 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
99869788 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
99869805 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
99869823 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:99872276 original size:3 final size:3
Alignment explanation
Indices: 99872262--99872299 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
99872252 AAACGTAAAC
*
99872262 TAA TACA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA T
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
99872300 GTAAAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:99872757 original size:14 final size:16
Alignment explanation
Indices: 99872738--99872769 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
99872728 AAAAAGAAAA
99872738 AAAAGAGA-AGGG-AG
1 AAAAGAGAGAGGGTAG
99872752 AAAAGAGAGAGGGTAG
1 AAAAGAGAGAGGGTAG
99872768 AA
1 AA
99872770 GGGAGAGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 4 0.25
16 4 0.25
ACGTcount: A:0.56, C:0.00, G:0.41, T:0.03
Consensus pattern (16 bp):
AAAAGAGAGAGGGTAG
Found at i:99873449 original size:16 final size:16
Alignment explanation
Indices: 99873428--99873475 Score: 87
Period size: 16 Copynumber: 3.0 Consensus size: 16
99873418 TTTTGTGTAA
*
99873428 TGGGCTGTTAGTTTAG
1 TGGGCTGGTAGTTTAG
99873444 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
99873460 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
99873476 GTTATTGGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.12, C:0.06, G:0.42, T:0.40
Consensus pattern (16 bp):
TGGGCTGGTAGTTTAG
Found at i:99879030 original size:4 final size:4
Alignment explanation
Indices: 99879021--99879053 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
99879011 CCATGCCAAC
99879021 TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG T
99879054 GTTACTAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:99881408 original size:22 final size:22
Alignment explanation
Indices: 99881383--99881428 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
99881373 TGCAAAATAA
*
99881383 AAATAAAAAATGAAG-AGGATGC
1 AAATAAAAAA-GAAGAAGAATGC
*
99881405 AAATGAAAAAGAAGAAGAATGC
1 AAATAAAAAAGAAGAAGAATGC
99881427 AA
1 AA
99881429 GTGGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.63, C:0.04, G:0.22, T:0.11
Consensus pattern (22 bp):
AAATAAAAAAGAAGAAGAATGC
Found at i:99900695 original size:37 final size:37
Alignment explanation
Indices: 99900634--99900779 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
99900624 TACGTATGAT
* *
99900634 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
99900669 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
99900706 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
99900743 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
99900780 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:99900796 original size:46 final size:46
Alignment explanation
Indices: 99900743--99901011 Score: 331
Period size: 46 Copynumber: 5.6 Consensus size: 46
99900733 TAAGTGTAGC
* **
99900743 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
99900789 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
99900835 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
99900887 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
99900933 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
99900985 CACTTATCACTTTGTCATTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
99901012 AGTACTCAAA
Statistics
Matches: 198, Mismatches: 13, Indels: 24
0.84 0.06 0.10
Matches are distributed among these distances:
46 111 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:99900862 original size:52 final size:52
Alignment explanation
Indices: 99900786--99900997 Score: 292
Period size: 52 Copynumber: 4.2 Consensus size: 52
99900776 TAGCTAAAGC
* *
99900786 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
99900839 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
99900891 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
99900937 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
99900989 TATCACTTT
1 TATCACTTT
99900998 GTCATTTGAT
Statistics
Matches: 142, Mismatches: 11, Indels: 13
0.86 0.07 0.08
Matches are distributed among these distances:
46 43 0.30
49 1 0.01
52 86 0.61
53 12 0.08
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:99900908 original size:98 final size:98
Alignment explanation
Indices: 99900743--99901011 Score: 448
Period size: 98 Copynumber: 2.7 Consensus size: 98
99900733 TAAGTGTAGC
* * *
99900743 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
99900808 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
99900842 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
99900907 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
99900940 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCATTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
99901005 GATCAGA
66 GATCAGA
99901012 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 150 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:99903523 original size:138 final size:139
Alignment explanation
Indices: 99903184--99903524 Score: 371
Period size: 138 Copynumber: 2.5 Consensus size: 139
99903174 TATGTTAAAA
* *
99903184 AAAAAACTTGAAGCAACATGAAATAAAAAATATAAATGTG--T-AGA-AG-AATTGGACTCGAGA
1 AAAAAGCTTGAAGCAACATGAAAT-AAAAATATAAATGTGAATAAGAGAGTAATTGAACTCGAGA
* * * *
99903244 CTTAATAATGTAATTACAACTATCTAACCATCTAACGAAAAGGACTAATATGTTAAAAAATATTA
65 CTCAATAATGTAATTACAACTATCTAACCATCAAACGAAAAGAACTAATATGCTAAAAAATATTA
99903309 ATTAAAATAT
130 ATTAAAATAT
* * ** * * * * *
99903319 AAAAAGCTTCAAACAACATGAAA-AAAAATATAAAT-ACAAGTAGGAGATTAATCGAACTCAAAA
1 AAAAAGCTTGAAGCAACATGAAATAAAAATATAAATGTGAA-TAAGAGAGTAATTGAACTCGAGA
* * * *
99903382 CTCAATGATGTAATTGCAACTATCTAACCATCAAAC-CAAAGAACTAATATGCTAAAAGA-A-TA
65 CTCAATAATGTAATTACAACTATCTAACCATCAAACGAAAAGAACTAATATGCTAAAAAATATTA
*
99903444 ATTAAAAATTT
130 ATT-AAAATAT
*
99903455 AAAAAGCTTGAAGCAACATGAAATGAAAAATACAAATGTGAATAAGAGAGTAATTGAAC-CTGAG
1 AAAAAGCTTGAAGCAACATGAAAT-AAAAATATAAATGTGAATAAGAGAGTAATTGAACTC-GAG
99903519 ACTCAA
64 ACTCAA
99903525 GGATAAGAAC
Statistics
Matches: 165, Mismatches: 30, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
133 12 0.07
135 26 0.16
136 30 0.18
137 21 0.13
138 74 0.45
139 2 0.01
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.23
Consensus pattern (139 bp):
AAAAAGCTTGAAGCAACATGAAATAAAAATATAAATGTGAATAAGAGAGTAATTGAACTCGAGAC
TCAATAATGTAATTACAACTATCTAACCATCAAACGAAAAGAACTAATATGCTAAAAAATATTAA
TTAAAATAT
Found at i:99910366 original size:12 final size:12
Alignment explanation
Indices: 99910349--99910381 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
99910339 TGGATGGGGT
99910349 TTTGGTCCTGGC
1 TTTGGTCCTGGC
99910361 TTTGGTCCTGGC
1 TTTGGTCCTGGC
*
99910373 TTTGTTCCT
1 TTTGGTCCT
99910382 TTACATCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.24, G:0.27, T:0.48
Consensus pattern (12 bp):
TTTGGTCCTGGC
Found at i:99911227 original size:24 final size:24
Alignment explanation
Indices: 99911175--99911229 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
99911165 TTCCGTTATT
* *
99911175 CAGCTCGGAAGAGCTTACTATTTA
1 CAGCTCGGAAAAGCTTACTATTAA
*
99911199 TAGCTCGGAAAAGCTTA-TAATTAA
1 CAGCTCGGAAAAGCTTACT-ATTAA
99911223 CAGCTCG
1 CAGCTCG
99911230 TATGATCATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (24 bp):
CAGCTCGGAAAAGCTTACTATTAA
Found at i:99916269 original size:27 final size:27
Alignment explanation
Indices: 99916238--99916378 Score: 77
Period size: 27 Copynumber: 5.0 Consensus size: 27
99916228 AGAAAAACAA
*
99916238 CTACAATTACAACAACAACAACAATGG
1 CTACAATGACAACAACAACAACAATGG
** *
99916265 CTAC-ACCACAAGTAAGTACAACAACAATGG
1 CTACAATGACAA--CA--ACAACAACAATGG
* * * *
99916295 CTACACTCTCAGCAGCGACAACAACAATGG
1 CTACA--ATGA-CAACAACAACAACAATGG
** ** * *
99916325 CTACAGCGGGAACTACAACACCAATGG
1 CTACAATGACAACAACAACAACAATGG
*
99916352 CTACAATGACAACTACAACAACAATGG
1 CTACAATGACAACAACAACAACAATGG
99916379 GTATGAGACA
Statistics
Matches: 85, Mismatches: 21, Indels: 16
0.70 0.17 0.13
Matches are distributed among these distances:
26 5 0.06
27 40 0.47
28 1 0.01
30 35 0.41
33 2 0.02
34 2 0.02
ACGTcount: A:0.44, C:0.28, G:0.14, T:0.13
Consensus pattern (27 bp):
CTACAATGACAACAACAACAACAATGG
Found at i:99916316 original size:30 final size:30
Alignment explanation
Indices: 99916252--99916329 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 30
99916242 AATTACAACA
*
99916252 ACAACAACAATGGCTACACCACAAGTAAGT
1 ACAACAACAATGGCTACACCACAAGTAAGG
* *
99916282 ACAACAACAATGGCTACACTCTC-AG-CAGCG
1 ACAACAACAATGGCTACAC-CACAAGTAAG-G
99916312 ACAACAACAATGGCTACA
1 ACAACAACAATGGCTACA
99916330 GCGGGAACTA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
29 2 0.05
30 39 0.91
31 2 0.05
ACGTcount: A:0.44, C:0.29, G:0.14, T:0.13
Consensus pattern (30 bp):
ACAACAACAATGGCTACACCACAAGTAAGG
Found at i:99922568 original size:26 final size:26
Alignment explanation
Indices: 99922538--99922645 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
99922528 TGAAATTCCC
99922538 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
99922564 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
99922590 ATCACGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
99922616 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
99922642 ATCA
1 ATCA
99922646 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:99923504 original size:92 final size:92
Alignment explanation
Indices: 99923396--99923613 Score: 303
Period size: 92 Copynumber: 2.4 Consensus size: 92
99923386 TTGATATCTA
* * *
99923396 AACTATCAAAATGTGTTTTATTATGGTACCT-GTACATTCATAAAATGTCAAATGTGATACCTGC
1 AACTATCAATATGTGTTTTATTATGGTACCTGGT-CATTCATAAAATGTCAAATATAATACCTGC
* *
99923460 ACTTTGAAAATGTTCAATATGGTATTTG
65 ACTTTGAAAATATCCAATATGGTATTTG
* * **
99923488 AACTATCAATATGTGTTTTATTATGGTACTTGGTCTTTCATAAAATGTCAAATATAATATTTGCA
1 AACTATCAATATGTGTTTTATTATGGTACCTGGTCATTCATAAAATGTCAAATATAATACCTGCA
99923553 CTTTGAAAATATCCAATATGGTATTTG
66 CTTTGAAAATATCCAATATGGTATTTG
* * * *
99923580 AACTATCAATATATGCTTTATTGTGGTACTTGGT
1 AACTATCAATATGTGTTTTATTATGGTACCTGGT
99923614 GTTAACATCG
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 111 0.98
93 2 0.02
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.41
Consensus pattern (92 bp):
AACTATCAATATGTGTTTTATTATGGTACCTGGTCATTCATAAAATGTCAAATATAATACCTGCA
CTTTGAAAATATCCAATATGGTATTTG
Found at i:99924330 original size:16 final size:15
Alignment explanation
Indices: 99924309--99924350 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
99924299 AAATACTTTA
99924309 ATTATTATTTGAAGTT
1 ATTATTATTTGAAG-T
99924325 ATTATTATTATTGAAGT
1 ATTATTA-T-TTGAAGT
99924342 ATT-TTATTT
1 ATTATTATTT
99924351 TTTTAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 2 0.08
15 1 0.04
16 10 0.42
17 5 0.21
18 6 0.25
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (15 bp):
ATTATTATTTGAAGT
Found at i:99924333 original size:19 final size:17
Alignment explanation
Indices: 99924309--99924349 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 17
99924299 AAATACTTTA
99924309 ATTATTATTTGAAGTTATT
1 ATTATTA-TTGAAG-TATT
99924328 ATTATTATTGAAGTATT
1 ATTATTATTGAAGTATT
99924345 -TTATT
1 ATTATT
99924350 TTTTTAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.23
17 4 0.18
18 6 0.27
19 7 0.32
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.59
Consensus pattern (17 bp):
ATTATTATTGAAGTATT
Found at i:99924464 original size:33 final size:32
Alignment explanation
Indices: 99924403--99924464 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
99924393 AATAATAATT
*
99924403 ATTACTTTAAATTAATTACAATAATTAAAAAA
1 ATTACTTTAAATTAATTACAACAATTAAAAAA
*
99924435 ATTATTTTAAAATCTAATTA-AACAATTAAA
1 ATTACTTT-AAAT-TAATTACAACAATTAAA
99924465 TGTGTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 7 0.27
33 13 0.50
34 6 0.23
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (32 bp):
ATTACTTTAAATTAATTACAACAATTAAAAAA
Found at i:99925236 original size:21 final size:20
Alignment explanation
Indices: 99925212--99925263 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
99925202 TTATGCCACA
99925212 TCAGTATTCTTATCCTGAAAT
1 TCAGTATT-TTATCCTGAAAT
* *
99925233 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAAAT
*
99925253 TCAATATTTTA
1 TCAGTATTTTA
99925264 ATTTGGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.46
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAAAT
Found at i:99932021 original size:27 final size:28
Alignment explanation
Indices: 99931964--99932022 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
99931954 TTTGAAAACT
* * *
99931964 AAAAAAAAAACTAGACTTATCATTAATA
1 AAAAAAAAAACTAAACTTATCATGAACA
*
99931992 AAAAAAAAAACTAAACTTA-CATGAGCA
1 AAAAAAAAAACTAAACTTATCATGAACA
99932019 AAAA
1 AAAA
99932023 TCTTCTCCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.64, C:0.12, G:0.05, T:0.19
Consensus pattern (28 bp):
AAAAAAAAAACTAAACTTATCATGAACA
Found at i:99936469 original size:6 final size:6
Alignment explanation
Indices: 99936450--99936488 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
99936440 GTCGAAACTT
*
99936450 TTGCCC TTGACC TTGCCC TTGCCC TTGCCC TTGCCC TTG
1 TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTG
99936489 ATAAACAGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.03, C:0.44, G:0.18, T:0.36
Consensus pattern (6 bp):
TTGCCC
Found at i:99938952 original size:27 final size:27
Alignment explanation
Indices: 99938922--99938973 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
99938912 ATGCTATGGA
99938922 CCTCATATGGTGTCAAAGCTGATGTGC
1 CCTCATATGGTGTCAAAGCTGATGTGC
99938949 CCTCATATGGTGTCAAAGCTGATGT
1 CCTCATATGGTGTCAAAGCTGATGT
99938974 AACTTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (27 bp):
CCTCATATGGTGTCAAAGCTGATGTGC
Found at i:99939653 original size:452 final size:452
Alignment explanation
Indices: 99939066--99940876 Score: 3559
Period size: 452 Copynumber: 4.0 Consensus size: 452
99939056 ATCCACTTAA
99939066 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
1 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
99939131 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
66 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
*
99939196 TGATCTGTTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
131 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
99939261 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
196 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
99939326 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
261 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
99939391 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
326 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
99939456 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
391 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
99939518 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
1 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
99939583 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
66 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
*
99939648 TGATCTGTTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
131 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
99939713 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
196 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
99939778 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
261 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
99939843 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
326 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
99939908 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
391 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
99939970 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
1 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
99940035 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
66 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
99940100 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
131 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
99940165 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
196 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
*
99940230 AATCACCACCTTGCAAGCCCAAGTGTCAACGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
261 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
99940295 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
326 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
*
99940360 TTCTGTTAAAAATCTGATCAGCCTATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
391 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
99940422 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
1 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
99940487 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
66 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
*
99940552 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTATGTTTTGGATGAATTAG
131 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
99940617 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
196 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
99940682 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
261 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
*
99940747 GAAACAAATTCCTTCTCTATTATACATGTCAAAATCAAACATCTTGTTGGTGTTTATTGTTTTTA
326 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
*
99940812 TTCTGTTAAAAATCTGATCAGCCTATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
391 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
99940874 TGT
1 TGT
99940877 TAGGACAAGG
Statistics
Matches: 1353, Mismatches: 6, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
452 1353 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (452 bp):
TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
Found at i:99949214 original size:21 final size:20
Alignment explanation
Indices: 99949168--99949215 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
99949158 CTATTTCATC
**
99949168 TTTT-AATTTTGAAACATTT
1 TTTTAAATTTTGAAACATAA
99949187 TTCTTAAATTTTGAAACCATAA
1 TT-TTAAATTTTGAAA-CATAA
99949209 TTTTAAA
1 TTTTAAA
99949216 CTCCAAACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.08
20 2 0.08
21 15 0.62
22 5 0.21
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (20 bp):
TTTTAAATTTTGAAACATAA
Found at i:99950499 original size:16 final size:16
Alignment explanation
Indices: 99950480--99950521 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
99950470 TTACTTGATC
99950480 AAAATTAATTTTTCCA
1 AAAATTAATTTTTCCA
99950496 AAAATTAATTTTTCCA
1 AAAATTAATTTTTCCA
*
99950512 AAAATCAATT
1 AAAATTAATT
99950522 AGATTTTCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAATTAATTTTTCCA
Found at i:99950505 original size:20 final size:18
Alignment explanation
Indices: 99950480--99950533 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 18
99950470 TTACTTGATC
99950480 AAAATTAATTTTTCC--A
1 AAAATTAATTTTTCCAAA
99950496 AAAATTAATTTTTCCAAA
1 AAAATTAATTTTTCCAAA
99950514 AATCAATTAGA-TTTTCCAAA
1 AA--AATTA-ATTTTTCCAAA
99950534 TTAAGTTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 15 0.45
18 3 0.09
20 14 0.42
21 1 0.03
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.39
Consensus pattern (18 bp):
AAAATTAATTTTTCCAAA
Found at i:99951674 original size:15 final size:15
Alignment explanation
Indices: 99951650--99951681 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
99951640 TATGCATGCA
*
99951650 AAATATAAAAGACAT
1 AAATACAAAAGACAT
99951665 AAATACAAAAGACAT
1 AAATACAAAAGACAT
99951680 AA
1 AA
99951682 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:99952668 original size:51 final size:51
Alignment explanation
Indices: 99952605--99952709 Score: 201
Period size: 51 Copynumber: 2.1 Consensus size: 51
99952595 ACACTATCTT
99952605 TTGGAGATTGATTGTCTGAATGTTGAGCTACCTTAAGGATCCCCTCTTTGG
1 TTGGAGATTGATTGTCTGAATGTTGAGCTACCTTAAGGATCCCCTCTTTGG
*
99952656 TTGGAGATTGATTGTCTGAATGTTGAGCTACCTTAAGGATCTCCTCTTTGG
1 TTGGAGATTGATTGTCTGAATGTTGAGCTACCTTAAGGATCCCCTCTTTGG
99952707 TTG
1 TTG
99952710 TTAAACCGTC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (51 bp):
TTGGAGATTGATTGTCTGAATGTTGAGCTACCTTAAGGATCCCCTCTTTGG
Found at i:99953858 original size:16 final size:17
Alignment explanation
Indices: 99953829--99953863 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
99953819 ACTTTCTTTG
99953829 TTCAAAAATAATTTTTA
1 TTCAAAAATAATTTTTA
99953846 TTCAAAAAT-ATTTTTA
1 TTCAAAAATAATTTTTA
99953862 TT
1 TT
99953864 TGTTATATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (17 bp):
TTCAAAAATAATTTTTA
Found at i:99953882 original size:24 final size:22
Alignment explanation
Indices: 99953839--99953882 Score: 52
Period size: 24 Copynumber: 1.9 Consensus size: 22
99953829 TTCAAAAATA
*
99953839 ATTTTTATTCAAAAATATTTTT
1 ATTTTTATTCAAAAAAATTTTT
*
99953861 ATTTGTTATATCAAAACAATTT
1 ATTT-TTAT-TCAAAAAAATTT
99953883 ATCATATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 4 0.22
24 10 0.56
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTTTTATTCAAAAAAATTTTT
Found at i:99954351 original size:15 final size:15
Alignment explanation
Indices: 99954326--99954376 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
99954316 TAACAAAATC
*
99954326 ATAAT-TATATTAAT
1 ATAATATATATTAAA
99954340 ATAATATATATTAAA
1 ATAATATATATTAAA
* *
99954355 ATAATATTTATCTTAA
1 ATAATATATAT-TAAA
99954371 ATAATA
1 ATAATA
99954377 ATTAAAGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
14 5 0.16
15 18 0.56
16 9 0.28
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATATATATTAAA
Found at i:99960557 original size:20 final size:20
Alignment explanation
Indices: 99960532--99960573 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
99960522 TCAAACTCTT
99960532 ATGACCTCAAAAACATAAAA
1 ATGACCTCAAAAACATAAAA
99960552 ATGACCTCAAAAACATAAAA
1 ATGACCTCAAAAACATAAAA
99960572 AT
1 AT
99960574 TATAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.60, C:0.19, G:0.05, T:0.17
Consensus pattern (20 bp):
ATGACCTCAAAAACATAAAA
Found at i:99960749 original size:14 final size:15
Alignment explanation
Indices: 99960718--99960759 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
99960708 CTTATATACT
*
99960718 TTAATTAAAAGTTAA
1 TTAATTATAAGTTAA
99960733 TTAATTATAAG-TAA
1 TTAATTATAAGTTAA
99960747 TTAATTAT-AGTTA
1 TTAATTATAAGTTA
99960760 TAATTAACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 2 0.08
14 13 0.52
15 10 0.40
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (15 bp):
TTAATTATAAGTTAA
Found at i:99961794 original size:17 final size:18
Alignment explanation
Indices: 99961772--99961807 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
99961762 GATATGATTC
*
99961772 TAAAAT-TATTAAAAAAA
1 TAAAATATATAAAAAAAA
99961789 TAAAATATATAAAAAAAA
1 TAAAATATATAAAAAAAA
99961807 T
1 T
99961808 CAGGGAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAATATATAAAAAAAA
Found at i:99962095 original size:22 final size:21
Alignment explanation
Indices: 99962060--99962154 Score: 74
Period size: 18 Copynumber: 4.7 Consensus size: 21
99962050 AAAAGGTATC
* *
99962060 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
99962081 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
99962104 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
99962123 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
99962141 TGCATATCATATCT
1 TACAAATCATATCT
99962155 AAGATTGCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
18 17 0.27
19 17 0.27
21 4 0.06
22 15 0.24
23 10 0.16
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:99962103 original size:23 final size:22
Alignment explanation
Indices: 99962060--99962117 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
99962050 AAAAGGTATC
* *
99962060 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
99962081 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
99962104 TGCATATCATATCT
1 TACAAATCATATCT
99962118 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:99962120 original size:19 final size:19
Alignment explanation
Indices: 99962096--99962169 Score: 141
Period size: 19 Copynumber: 3.9 Consensus size: 19
99962086 AATCATATCT
99962096 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
99962115 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
99962133 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
99962152 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
99962170 TGAAGATTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.33
19 36 0.67
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:99962142 original size:37 final size:38
Alignment explanation
Indices: 99962089--99962169 Score: 141
Period size: 37 Copynumber: 2.2 Consensus size: 38
99962079 ATTACAAAAT
99962089 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
99962125 CA-ATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
99962162 CATATCAT
1 CATATCAT
99962170 TGAAGATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 31 0.74
38 5 0.12
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:99962189 original size:37 final size:37
Alignment explanation
Indices: 99962099--99962178 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
99962089 CATATCTTCT
* *
99962099 AAGATTGCATATCATATCTAAGATTGCAATCATATCT
1 AAGATTACATATCATATCTAAGATTGCAATCATATCG
*
99962136 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTACATATCATATCTAAGATTGCA-ATCATATCG
99962172 AAGATTA
1 AAGATTA
99962179 TATTTCCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
36 6 0.15
37 29 0.73
38 5 0.12
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (37 bp):
AAGATTACATATCATATCTAAGATTGCAATCATATCG
Found at i:99962571 original size:45 final size:45
Alignment explanation
Indices: 99962516--99962789 Score: 259
Period size: 45 Copynumber: 6.1 Consensus size: 45
99962506 AGAAGGCGAT
* * *
99962516 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
99962561 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCTAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
99962606 ATCTGCT-TCTTCAATCTACTCCCCGTCTAATACAGATATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
99962650 ATCTGTTATCTCCGATTTGCTTCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * *
99962695 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACATATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* * *
99962740 ATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
99962787 ATC
1 ATC
99962790 ATCTTGGATC
Statistics
Matches: 183, Mismatches: 37, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
43 6 0.03
44 43 0.23
45 104 0.57
46 1 0.01
47 18 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:99962649 original size:89 final size:90
Alignment explanation
Indices: 99962516--99962699 Score: 262
Period size: 89 Copynumber: 2.1 Consensus size: 90
99962506 AGAAGGCGAT
** * * *
99962516 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
*
99962581 TCCCCGTCTAATACAGAGACGCTAA
66 TCCCCGTCTAATACAGAGACGCCAA
* * *
99962606 ATCTGCT-TCTTCAATCTACTCCCCGTCTAATACAGATATGCCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
* *
99962670 TTCCCGTCTAATACAGAGATGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
99962695 ATCTG
1 ATCTG
99962700 TCATCTTGGA
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
89 76 0.92
90 7 0.08
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
TCCCCGTCTAATACAGAGACGCCAA
Found at i:99962858 original size:78 final size:78
Alignment explanation
Indices: 99962729--99963023 Score: 493
Period size: 78 Copynumber: 3.8 Consensus size: 78
99962719 ATGTAAACAT
*
99962729 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
99962794 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
99962807 ATGAAGGTCCA-ATCTGTTATGTTTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
99962871 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
99962885 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
99962950 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
99962963 ATGAAGGTGAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
99963024 TGTTTCTTCG
Statistics
Matches: 204, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
77 2 0.01
78 200 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:99963232 original size:78 final size:78
Alignment explanation
Indices: 99963104--99963713 Score: 819
Period size: 78 Copynumber: 7.6 Consensus size: 78
99963094 TGAAAGCCAA
*
99963104 ATCTGCTATGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
99963169 TAATGAAGGTCCA-
66 CAATGAAGGT-CAG
* * *
99963182 ATCTGTTATATCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
99963247 CAATGAAGGTCAG
66 CAATGAAGGTCAG
* *
99963260 ATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAA----TCATCTTGGATCT
99963325 GCTTCGATGTAAACACATGAAGGTCAG
62 G---C--T-T---CA-ATGAAGGTCAG
* * *
99963352 ATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAAATAATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
99963417 CAATGAAGGTCCA-
66 CAATGAAGGT-CAG
* * * *
99963430 ATTTGTTATGTCTTCGATATGCTCCCCGTCTAATGCAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
99963495 CAATGAAGGTCAT
66 CAATGAAGGTCAG
* * *
99963508 CTCTGCTATGTCTTTGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
99963573 CAATGAAGGTCAG
66 CAATGAAGGTCAG
* * * * *
99963586 ATCTGCTGTGTCTTTGATCTGCTCACTGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
99963651 CAATGAAGGTCAG
66 CAATGAAGGTCAG
* * **
99963664 ATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
99963714 TATTTCTTCA
Statistics
Matches: 474, Mismatches: 41, Indels: 34
0.86 0.07 0.06
Matches are distributed among these distances:
77 4 0.01
78 376 0.79
79 4 0.01
82 15 0.03
83 1 0.00
85 2 0.00
87 1 0.00
88 14 0.03
91 2 0.00
92 55 0.12
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
CAATGAAGGTCAG
Found at i:99963358 original size:248 final size:239
Alignment explanation
Indices: 99963050--99963713 Score: 858
Period size: 248 Copynumber: 2.7 Consensus size: 239
99963040 TTTCTGACAG
* * * * * *
99963050 TACAGAGATG-CAAATCATCTTAGATCTACTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATG
1 TACAGAGATGCCAAATCATCTTGGATCTGC-T----GTAAACACATGAAGGTCAGATCTGCTATG
* *
99963114 TCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAATGAAGGT
61 TCTTTGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
* *
99963179 CCAATCTGTTATATCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATCTTGGATCTG
126 CCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTG
* *
99963244 CTTCAATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAA
191 CTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAA
99963293 TACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTGC
1 TACAGAGATGCCAAA----TCATCTTGGATCTG---C--TGTAAACACATGAAGGTCAGATCTGC
* * *
99963358 TATGTCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAAATAATCTTGGATCTGCTTCAATGA
57 TATGTCTTTGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
* * *
99963423 AGGTCCAATTTGTTATGTCTTCGATATGCTCCCCGTCTAATGCAGAGATGCCAAATCATCTTGGA
122 AGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
** * *
99963488 TCTGCTTCAATGAAGGTCATCTCTGCTATGTCTTTGATCTGCTCTCCGTCTAA
187 TCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAA
*
99963541 TACAGAGATGCCAAATCATCTTGGATCTGCT-T---CA-ATGAAGGTCAGATCTGCTGTGTCTTT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTGTAAACACATGAAGGTCAGATCTGCTATGTCTTT
* *
99963601 GATCTGCT-CACTGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAG
66 GATCTGCTCCCCT-TCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-
* * * **
99963664 ATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
129 ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
99963714 TATTTCTTCA
Statistics
Matches: 373, Mismatches: 37, Indels: 31
0.85 0.08 0.07
Matches are distributed among these distances:
233 4 0.01
234 119 0.32
235 2 0.01
238 1 0.00
239 1 0.00
241 1 0.00
243 10 0.03
244 18 0.05
248 215 0.58
251 1 0.00
252 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (239 bp):
TACAGAGATGCCAAATCATCTTGGATCTGCTGTAAACACATGAAGGTCAGATCTGCTATGTCTTT
GATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCAAT
CTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCA
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAA
Found at i:99964054 original size:220 final size:220
Alignment explanation
Indices: 99963655--99964220 Score: 871
Period size: 220 Copynumber: 2.6 Consensus size: 220
99963645 CTGCTTCAAT
* *
99963655 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTATTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* *
99963720 TTCAATTTATTCTATGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TTCAATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* * *
99963785 TGAAGGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATATGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATAATCTTG
*
99963850 GATCTACTTTGATGTGAAAAAATCC
196 GATCTACTTAGATGTGAAAAAATCC
** *
99963875 GAAGGTTAGATCTTTTATGTCTTCGGTCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* *
99963940 TTCAATTTGTTCTCTGACAGTATAGAGATGCCAAATCATCTTAGATCTGTTTCAGCGTAAACACG
66 TTCAATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* * *
99964005 TGAAAGCCACATATGCTATGTCTTCGATCTGTTCCTTGTCAATGCAAGGATGCCAAATAATCTTG
131 TGAAAGCCAAATATGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATAATCTTG
* *
99964070 GATCTACTTAGATGTGAAAACATCT
196 GATCTACTTAGATGTGAAAAAATCC
* * * *
99964095 GAAGGTTAGTTCTGCTATGTCTTAGATCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * ** * **
99964160 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCCACTTCAGCGTAAA
66 TTCAATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAA
99964221 TACCTGAAGG
Statistics
Matches: 312, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
220 312 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (220 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTCAATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
TGAAAGCCAAATATGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATAATCTTG
GATCTACTTAGATGTGAAAAAATCC
Found at i:99972915 original size:23 final size:22
Alignment explanation
Indices: 99972872--99972929 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
99972862 AAAAGGTATC
* *
99972872 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
99972893 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
99972916 TGCATATCATATCT
1 TACAAATCATATCT
99972930 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:99972943 original size:22 final size:19
Alignment explanation
Indices: 99972899--99972946 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
99972889 AGATTACAAA
99972899 ATCATATCTTCTAAGATTG
1 ATCATATCTTCTAAGATTG
99972918 --CATATCATATCTAAGATTG
1 ATCATATC-T-TCTAAGATTG
99972937 TATCATATCT
1 -ATCATATCT
99972947 AAGATTGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
17 6 0.25
18 1 0.04
19 10 0.42
21 1 0.04
22 6 0.25
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (19 bp):
ATCATATCTTCTAAGATTG
Found at i:99972987 original size:36 final size:36
Alignment explanation
Indices: 99972911--99972988 Score: 115
Period size: 36 Copynumber: 2.2 Consensus size: 36
99972901 CATATCTTCT
*
99972911 AAGATTGCATATCATATCTAAGATTGTATCATATCT
1 AAGATTGCATATCATATCTAAGATTGTATCATATCG
99972947 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCTAAGATTG--TATCATATCG
99972983 AAGATT
1 AAGATT
99972989 ATATTTCCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
36 32 0.82
37 1 0.03
38 6 0.15
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (36 bp):
AAGATTGCATATCATATCTAAGATTGTATCATATCG
Found at i:99972988 original size:17 final size:19
Alignment explanation
Indices: 99972908--99972980 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
99972898 AATCATATCT
99972908 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
99972927 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
99972944 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
99972963 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
99972981 TGAAGATTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.33
19 35 0.67
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:99973136 original size:21 final size:20
Alignment explanation
Indices: 99973099--99973137 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
99973089 TTGGACTTCG
**
99973099 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
99973119 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
99973138 TTTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:99979815 original size:19 final size:19
Alignment explanation
Indices: 99979796--99979843 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 19
99979786 ATAATTCTTA
99979796 AAATTAAATTAATAT-TTT
1 AAATTAAATTAATATATTT
* *
99979814 -AATTAAAATAAAATATTT
1 AAATTAAATTAATATATTT
99979832 AAATT-AATTAAT
1 AAATTAAATTAAT
99979844 GGTATTGTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
17 12 0.50
18 8 0.33
19 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AAATTAAATTAATATATTT
Found at i:99979819 original size:17 final size:17
Alignment explanation
Indices: 99979796--99979843 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
99979786 ATAATTCTTA
99979796 AAATTAAATTAATATTT
1 AAATTAAATTAATATTT
* *
99979813 TAATTAAAATAAAATATTT
1 AAATT-AAAT-TAATATTT
99979832 AAATT-AATTAAT
1 AAATTAAATTAAT
99979844 GGTATTGTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
16 3 0.12
17 7 0.28
18 4 0.16
19 11 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAATTAAATTAATATTT
Found at i:99988372 original size:13 final size:13
Alignment explanation
Indices: 99988356--99988380 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99988346 TTAAATCAGT
99988356 TAATTAGTTTAAA
1 TAATTAGTTTAAA
99988369 TAATTAGTTTAA
1 TAATTAGTTTAA
99988381 TAAATAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:99994756 original size:8 final size:8
Alignment explanation
Indices: 99994743--99994771 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
99994733 TAACCCTAAT
99994743 CATTAACC
1 CATTAACC
99994751 CATTAACC
1 CATTAACC
99994759 CATTAACC
1 CATTAACC
99994767 CATTA
1 CATTA
99994772 CTGTTGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (8 bp):
CATTAACC
Found at i:99998092 original size:13 final size:13
Alignment explanation
Indices: 99998076--99998100 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99998066 TTAAATCAGT
99998076 TAATTAGTTTAAA
1 TAATTAGTTTAAA
99998089 TAATTAGTTTAA
1 TAATTAGTTTAA
99998101 TAAATAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:100005862 original size:30 final size:30
Alignment explanation
Indices: 100005780--100005867 Score: 142
Period size: 30 Copynumber: 2.9 Consensus size: 30
100005770 CGCGGCCATG
*
100005780 ACACACGGGCGTGTGGTCTACCCATGTGTC
1 ACACACGGGCGTGTGGTCTACCCGTGTGTC
100005810 ACACACGGGCGTGTGGTCTACCCGTGTGTC
1 ACACACGGGCGTGTGGTCTACCCGTGTGTC
*
100005840 ACACACGGGTGTGTGGAT-TACCCGTGTG
1 ACACACGGGCGTGTGG-TCTACCCGTGTG
100005868 GGACTGCCTA
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
30 54 0.98
31 1 0.02
ACGTcount: A:0.16, C:0.27, G:0.33, T:0.24
Consensus pattern (30 bp):
ACACACGGGCGTGTGGTCTACCCGTGTGTC
Found at i:100015817 original size:35 final size:35
Alignment explanation
Indices: 100015778--100015890 Score: 120
Period size: 35 Copynumber: 3.2 Consensus size: 35
100015768 CCAACCAAAG
* * **
100015778 CACACCAATGCTCGTAAGAGCTAATCCCTTTGAAA
1 CACACCAATGCTCATAAAAGCTAATCCCTCCGAAA
*
100015813 CACACCAATGCTCATAAAAGTTAATCCCTCCGAAA
1 CACACCAATGCTCATAAAAGCTAATCCCTCCGAAA
* * ** *
100015848 CACACCAATGCCCATAAGAA-CTAGTCCAACCAAAA
1 CACACCAATGCTCATAA-AAGCTAATCCCTCCGAAA
100015883 CACACCAA
1 CACACCAA
100015891 ACAGAGATTA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
35 64 0.97
36 2 0.03
ACGTcount: A:0.41, C:0.33, G:0.10, T:0.17
Consensus pattern (35 bp):
CACACCAATGCTCATAAAAGCTAATCCCTCCGAAA
Found at i:100018023 original size:23 final size:23
Alignment explanation
Indices: 100017961--100018025 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
100017951 AGTGTCGTTT
* *
100017961 TGGTGTGTTTGGGTAGATTATTC
1 TGGTGTGTTTGGGTGGATCATTC
100017984 TGGTGTGTTTGGGTGGATCATTC
1 TGGTGTGTTTGGGTGGATCATTC
* *
100018007 TGGTATGTTTGGTTGGATC
1 TGGTGTGTTTGGGTGGATC
100018026 CGTGTATCCG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.11, C:0.06, G:0.37, T:0.46
Consensus pattern (23 bp):
TGGTGTGTTTGGGTGGATCATTC
Found at i:100021796 original size:42 final size:42
Alignment explanation
Indices: 100021747--100021852 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 42
100021737 AATAAACTCA
* * *
100021747 GACCACTCAACGAGCTCAGATGC-CACATATCTCAAGAACTTG
1 GACCACTCAACGAGCTCAGAT-CTCACACATATCAAGAAATTG
* * * * *
100021789 GACCACTCAACAAGTTCGGAATCTCATACATATCACGAAATTG
1 GACCACTCAACGAGCTCAG-ATCTCACACATATCAAGAAATTG
100021832 GACCACTCAACGAGCTCAGAT
1 GACCACTCAACGAGCTCAGAT
100021853 TGCTTAATTC
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
42 19 0.37
43 32 0.63
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (42 bp):
GACCACTCAACGAGCTCAGATCTCACACATATCAAGAAATTG
Found at i:100025725 original size:18 final size:18
Alignment explanation
Indices: 100025704--100025739 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
100025694 AATAATAATA
100025704 AAATAATAAT-AATAAACT
1 AAATAAT-ATCAATAAACT
100025722 AAATAATATCAATAAACT
1 AAATAATATCAATAAACT
100025740 TAAAAGGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 15 0.88
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATAATATCAATAAACT
Found at i:100025729 original size:3 final size:3
Alignment explanation
Indices: 100025640--100025718 Score: 51
Period size: 3 Copynumber: 26.7 Consensus size: 3
100025630 TTGAAGAGAA
* * *
100025640 AAT AAT AAT AAT AAT AAT AAT AA- AAC AACT AA- AAC AA- AATT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AA-T AAT
*
100025684 AAG AA- AGAT AAAT AAT AAT AA- AAT AAT AAT AAT AA
1 AAT AAT A-AT -AAT AAT AAT AAT AAT AAT AAT AAT AA
100025719 ACTAAATAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 18
0.75 0.04 0.21
Matches are distributed among these distances:
2 9 0.14
3 48 0.75
4 6 0.09
5 1 0.02
ACGTcount: A:0.71, C:0.04, G:0.03, T:0.23
Consensus pattern (3 bp):
AAT
Found at i:100025860 original size:16 final size:16
Alignment explanation
Indices: 100025811--100025873 Score: 76
Period size: 16 Copynumber: 3.9 Consensus size: 16
100025801 TAGCAAAATT
100025811 AAAATTAAAAT-TAAA
1 AAAATTAAAATATAAA
* *
100025826 ATAA-TAAAAGTATATA
1 AAAATTAAAA-TATAAA
100025842 AAAATTAAAATATAAA
1 AAAATTAAAATATAAA
100025858 AAAATTAGAAATATAA
1 AAAATTA-AAATATAA
100025874 GTATAAGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
14 5 0.12
15 4 0.10
16 18 0.45
17 13 0.32
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
AAAATTAAAATATAAA
Found at i:100025949 original size:22 final size:20
Alignment explanation
Indices: 100025905--100025956 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 20
100025895 TATTAATTAG
* *
100025905 TAAAATAAAAATAAATCATA
1 TAAAATAAAAATAAATAAAA
100025925 TAACAATTAAAAATAAATAAAA
1 TAA-AA-TAAAAATAAATAAAA
100025947 TAAAATAAAA
1 TAAAATAAAA
100025957 TTAGGGTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 8 0.29
21 4 0.14
22 16 0.57
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23
Consensus pattern (20 bp):
TAAAATAAAAATAAATAAAA
Found at i:100030198 original size:30 final size:30
Alignment explanation
Indices: 100030154--100030214 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
100030144 CACAGGCTGG
* * *
100030154 CACATGGGCATGTGGTCTGCCTGTGTGGAT
1 CACATGGGCATGTGGCCTGCCCGTGTAGAT
* *
100030184 CACATTGGCGTGTGGCCTGCCCGTGTAGAT
1 CACATGGGCATGTGGCCTGCCCGTGTAGAT
100030214 C
1 C
100030215 CTGAAAACTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.13, C:0.25, G:0.34, T:0.28
Consensus pattern (30 bp):
CACATGGGCATGTGGCCTGCCCGTGTAGAT
Found at i:100033587 original size:13 final size:13
Alignment explanation
Indices: 100033569--100033593 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100033559 GGATTTTCTC
100033569 TAACTAAACTAAT
1 TAACTAAACTAAT
100033582 TAACTAAACTAA
1 TAACTAAACTAA
100033594 GAATGCACAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (13 bp):
TAACTAAACTAAT
Found at i:100036164 original size:21 final size:21
Alignment explanation
Indices: 100036140--100036179 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
100036130 ATTGGAAGAG
100036140 GATACTCCGGTGGTAGTAGAT
1 GATACTCCGGTGGTAGTAGAT
100036161 GATACTCCGGTGGTAGTAG
1 GATACTCCGGTGGTAGTAG
100036180 CTATGGTCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.28
Consensus pattern (21 bp):
GATACTCCGGTGGTAGTAGAT
Found at i:100036419 original size:22 final size:23
Alignment explanation
Indices: 100036372--100036420 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
100036362 TTATAAAACC
*
100036372 TAAAGATGAAATAAAAATAGTAT
1 TAAAGATGAAATAAAAATAATAT
100036395 TAAAGA-GAAATAAAAAGTAAT-T
1 TAAAGATGAAATAAAAA-TAATAT
100036417 TAAA
1 TAAA
100036421 AACATAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.24
Consensus pattern (23 bp):
TAAAGATGAAATAAAAATAATAT
Found at i:100037792 original size:26 final size:27
Alignment explanation
Indices: 100037762--100037816 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
100037752 TCCCTAATAT
* *
100037762 TAAACATAACAAAGACTCA-AATAAAG
1 TAAACAAAACAAAGAATCAGAATAAAG
* *
100037788 TAAACAAAATAAAGAATTAGAATAAAG
1 TAAACAAAACAAAGAATCAGAATAAAG
100037815 TA
1 TA
100037817 GGGATAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.64, C:0.09, G:0.09, T:0.18
Consensus pattern (27 bp):
TAAACAAAACAAAGAATCAGAATAAAG
Found at i:100041856 original size:21 final size:21
Alignment explanation
Indices: 100041832--100041889 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
100041822 TATTTAGGTT
100041832 TTATATATTAAATTATATATA-
1 TTATATATTAAATTAT-TATAG
100041853 TTATAATGATT--ATTATTATAG
1 TTAT-AT-ATTAAATTATTATAG
*
100041874 TTTTATATTAAATTAT
1 TTATATATTAAATTAT
100041890 GATGATTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
19 3 0.10
20 6 0.19
21 17 0.55
22 2 0.06
23 3 0.10
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
TTATATATTAAATTATTATAG
Found at i:100042713 original size:39 final size:39
Alignment explanation
Indices: 100042606--100042740 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
100042596 GACCTCGAGT
* * *
100042606 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
100042647 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
100042685 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
100042724 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
100042741 CCATATTGTT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:100048506 original size:12 final size:13
Alignment explanation
Indices: 100048489--100048544 Score: 53
Period size: 12 Copynumber: 4.3 Consensus size: 13
100048479 TATTTAGGTT
100048489 TTATATATTA-AA
1 TTATATATTATAA
100048501 TTATATATTATAA
1 TTATATATTATAA
* *
100048514 TGATTATTATTATAG
1 TTA-TA-TATTATAA
*
100048529 TTTTATATTA-AA
1 TTATATATTATAA
100048541 TTAT
1 TTAT
100048545 TATGATTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
12 14 0.40
13 9 0.26
14 4 0.11
15 8 0.23
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (13 bp):
TTATATATTATAA
Found at i:100049367 original size:39 final size:40
Alignment explanation
Indices: 100049260--100049369 Score: 109
Period size: 38 Copynumber: 2.8 Consensus size: 40
100049250 GACCTCGAGT
* **
100049260 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAGC
** ** *
100049301 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
100049339 CGATGAGACACTGGGTGTCAACTATTACTTC
1 CGATGAGACACTGGGTGTCAACTATTACTTC
100049370 AAACTATCTG
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
38 19 0.35
39 18 0.33
40 1 0.02
41 15 0.27
42 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
Found at i:100064694 original size:6 final size:6
Alignment explanation
Indices: 100064683--100064716 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
100064673 TATTTCTCTC
*
100064683 TTTTTA TTTTTA TTTTTA TTTTT- CTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
100064717 TCATTTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:100066108 original size:49 final size:49
Alignment explanation
Indices: 100066036--100066276 Score: 284
Period size: 49 Copynumber: 4.9 Consensus size: 49
100066026 CAAAGCTATT
* *
100066036 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATC
* * * **
100066085 TGGTATACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATC
* * * * **
100066135 TGATACACGTAGTAGTCTGCACTTAGTACTACACACGTGATTGAAGTTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATC
* * * *
100066186 GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTAATTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATC
* *
100066235 TGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
100066277 TCACAATATA
Statistics
Matches: 160, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 78 0.49
50 46 0.29
51 36 0.22
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATC
Found at i:100068847 original size:46 final size:46
Alignment explanation
Indices: 100068795--100069159 Score: 552
Period size: 46 Copynumber: 7.9 Consensus size: 46
100068785 GTGTGCTCTA
*
100068795 TGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAGCC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCC
*
100068841 TGATATGAAATGTGTAAGACCCTGGTTGAAAGATACCATGGCAGCC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCC
*
100068887 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGCC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCC
*
100068933 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCC
*
100068979 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCC
***
100069025 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCC
*** * *
100069071 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCC
* * * * *
100069117 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
100069160 TCATGTCAAA
Statistics
Matches: 298, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 297 1.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCC
Found at i:100068895 original size:25 final size:25
Alignment explanation
Indices: 100068821--100068896 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
100068811 AGACCGTGGT
100068821 TGAAAGATACCATGGCAGCCTGATA
1 TGAAAGATACCATGGCAGCCTGATA
* * *
100068846 TGAAATGTGTA--A--G-ACCCTGGT-
1 TGAAA-G-ATACCATGGCAGCCTGATA
100068867 TGAAAGATACCATGGCAGCCTGATA
1 TGAAAGATACCATGGCAGCCTGATA
100068892 TGAAA
1 TGAAA
100068897 TGTGTAAGAC
Statistics
Matches: 37, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 6 0.16
22 6 0.16
23 2 0.05
24 6 0.16
25 11 0.30
26 1 0.03
27 2 0.05
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (25 bp):
TGAAAGATACCATGGCAGCCTGATA
Done.