Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 306 of 333
Found at i:100613775 original size:43 final size:43
Alignment explanation
Indices: 100613682--100613813 Score: 176
Period size: 43 Copynumber: 3.1 Consensus size: 43
100613672 AAAAGACGCA
*
100613682 AAAGACCAGGACTTTTAGCGGCGCTTTT-TAAAAAACGCCGTT
1 AAAGACCAGGACTTTTAGCGGCGCTTTTCTAAAAAACGCCGCT
* * *
100613724 AAAAACCAGGGCTTTTAGCGGCGCTTTTCTAAAAAACGCCACT
1 AAAGACCAGGACTTTTAGCGGCGCTTTTCTAAAAAACGCCGCT
* * ** *
100613767 AAAGACCAGGACTTTTCGCTGCGCTTTTCCCACAAACGCCGCT
1 AAAGACCAGGACTTTTAGCGGCGCTTTTCTAAAAAACGCCGCT
100613810 AAAG
1 AAAG
100613814 GTCATAAATT
Statistics
Matches: 77, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 26 0.34
43 51 0.66
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
AAAGACCAGGACTTTTAGCGGCGCTTTTCTAAAAAACGCCGCT
Found at i:100613940 original size:12 final size:12
Alignment explanation
Indices: 100613923--100613952 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
100613913 ATAAATATAA
100613923 AAAATTCCTATT
1 AAAATTCCTATT
100613935 AAAATT-CTATT
1 AAAATTCCTATT
100613946 AAAATTC
1 AAAATTC
100613953 ATTATCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (12 bp):
AAAATTCCTATT
Found at i:100613946 original size:11 final size:11
Alignment explanation
Indices: 100613923--100613956 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
100613913 ATAAATATAA
100613923 AAAATTCCTATT
1 AAAATT-CTATT
100613935 AAAATTCTATT
1 AAAATTCTATT
100613946 AAAATTC-ATT
1 AAAATTCTATT
100613956 A
1 A
100613957 TCAAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 4 0.18
11 12 0.55
12 6 0.27
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (11 bp):
AAAATTCTATT
Found at i:100614083 original size:15 final size:15
Alignment explanation
Indices: 100614063--100614097 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
100614053 AGTTTTAAAG
*
100614063 TTAAAATTTTAAATA
1 TTAAAATTTAAAATA
100614078 TTAAAATTTAAAATA
1 TTAAAATTTAAAATA
*
100614093 ATAAA
1 TTAAA
100614098 TTAATAACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
TTAAAATTTAAAATA
Found at i:100617514 original size:24 final size:24
Alignment explanation
Indices: 100617487--100617538 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
100617477 TTAGTAAGTC
*
100617487 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
100617511 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
100617535 AAAT
1 AAAT
100617539 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:100619484 original size:24 final size:24
Alignment explanation
Indices: 100619457--100619508 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
100619447 TTAGTAAGTC
*
100619457 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
100619481 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
100619505 AAAT
1 AAAT
100619509 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:100620128 original size:16 final size:16
Alignment explanation
Indices: 100620096--100620139 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
100620086 AACTAAAATA
*
100620096 TTAAATTTTTAAGTTTT
1 TTAAATTTTTTA-TTTT
100620113 TT--ATTTTTTATTTT
1 TTAAATTTTTTATTTT
100620127 TTAAATTTTTTAT
1 TTAAATTTTTTAT
100620140 GAAGATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 6 0.25
15 7 0.29
16 9 0.38
17 2 0.08
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (16 bp):
TTAAATTTTTTATTTT
Found at i:100620793 original size:14 final size:15
Alignment explanation
Indices: 100620774--100620809 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
100620764 AACTCCTAAT
100620774 CCCTAAACAT-TAAA
1 CCCTAAACATATAAA
100620788 CCCTAAA-ATATAAA
1 CCCTAAACATATAAA
100620802 CCCTAAAC
1 CCCTAAAC
100620810 CCTGAACCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 2 0.10
14 18 0.90
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (15 bp):
CCCTAAACATATAAA
Found at i:100620825 original size:21 final size:21
Alignment explanation
Indices: 100620801--100620841 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
100620791 TAAAATATAA
100620801 ACCC-TAAACCCTGAACCCCTT
1 ACCCTTAAACCCT-AACCCCTT
*
100620822 ACCCTTAACCCCTAACCCCT
1 ACCCTTAAACCCTAACCCCT
100620842 AACACATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.27, C:0.51, G:0.02, T:0.20
Consensus pattern (21 bp):
ACCCTTAAACCCTAACCCCTT
Found at i:100620842 original size:7 final size:7
Alignment explanation
Indices: 100620802--100620844 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
100620792 AAAATATAAA
*
100620802 CCCTAAA
1 CCCTAAC
100620809 CCCTGAAC
1 CCCT-AAC
*
100620817 CCCTTAC
1 CCCTAAC
*
100620824 CCTTAAC
1 CCCTAAC
100620831 CCCTAAC
1 CCCTAAC
100620838 CCCTAAC
1 CCCTAAC
100620845 ACATAAATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 24 0.80
8 6 0.20
ACGTcount: A:0.28, C:0.51, G:0.02, T:0.19
Consensus pattern (7 bp):
CCCTAAC
Found at i:100621013 original size:41 final size:40
Alignment explanation
Indices: 100620952--100621047 Score: 147
Period size: 41 Copynumber: 2.4 Consensus size: 40
100620942 CTAGTTGGTA
* *
100620952 TCTTTAGCGGCGTTTTACCAAAAGCGGCGCTAATGCTCTGG
1 TCTTTAGCGGCGTTTCACCAAAAGCGCCGCTAATGCTCT-G
*
100620993 TCTTTCGCGGCGTTTCACCAAAAGCGCCGCTAATGCTCTG
1 TCTTTAGCGGCGTTTCACCAAAAGCGCCGCTAATGCTCTG
*
100621033 TTTTTAGCGGCGTTT
1 TCTTTAGCGGCGTTT
100621048 TTGTCAAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 14 0.28
41 36 0.72
ACGTcount: A:0.17, C:0.26, G:0.25, T:0.32
Consensus pattern (40 bp):
TCTTTAGCGGCGTTTCACCAAAAGCGCCGCTAATGCTCTG
Found at i:100624759 original size:27 final size:27
Alignment explanation
Indices: 100624729--100624782 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
100624719 TGTATAAAAC
* *
100624729 AATTTAAGAA-AAGATGATATATATATA
1 AATTTAAGAACAA-ATAATATACATATA
*
100624756 AATTTTAGAACAAATAATATACATATA
1 AATTTAAGAACAAATAATATACATATA
100624783 TGTACATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (27 bp):
AATTTAAGAACAAATAATATACATATA
Found at i:100626047 original size:25 final size:26
Alignment explanation
Indices: 100626019--100626068 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
100626009 TGTAGTAAAA
*
100626019 AATAGAAAGA-AACTAA-AAAAAATCG
1 AATAGAAA-ACAAATAAGAAAAAATCG
100626044 AATAGAAAACAAATAAGAAAAAATC
1 AATAGAAAACAAATAAGAAAAAATC
100626069 AAGATCAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 13 0.59
26 8 0.36
ACGTcount: A:0.70, C:0.08, G:0.10, T:0.12
Consensus pattern (26 bp):
AATAGAAAACAAATAAGAAAAAATCG
Found at i:100632631 original size:15 final size:15
Alignment explanation
Indices: 100632607--100632636 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
100632597 AATTTAACTC
*
100632607 TAAAATTAAAAATTT
1 TAAAAATAAAAATTT
100632622 TAAAAATAAAAATTT
1 TAAAAATAAAAATTT
100632637 AATTCTAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAAAATAAAAATTT
Found at i:100632739 original size:23 final size:24
Alignment explanation
Indices: 100632713--100632763 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
100632703 ATTAAAAAGT
*
100632713 ATTAGATACAT-ATTATTTCTATA
1 ATTAGATACATCATTATTTCTAAA
* * *
100632736 ATTATATAGATCTTTATTTCTAAA
1 ATTAGATACATCATTATTTCTAAA
100632760 ATTA
1 ATTA
100632764 AAAAAACAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.39, C:0.08, G:0.04, T:0.49
Consensus pattern (24 bp):
ATTAGATACATCATTATTTCTAAA
Found at i:100638853 original size:24 final size:24
Alignment explanation
Indices: 100638809--100638895 Score: 77
Period size: 25 Copynumber: 3.5 Consensus size: 24
100638799 TGAACGTTCT
* *
100638809 GATATATGGCTCT-TCGGAACTTCTC
1 GATAT-TGGCTCTCT-GAAACTTCCC
*
100638834 GATATTGGCTCTCTTAAACTTCCC
1 GATATTGGCTCTCTGAAACTTCCC
* *
100638858 GATATATGGCTATCTGAAGCTTCCC
1 GATAT-TGGCTCTCTGAAACTTCCC
*
100638883 GATTAATGGCTCT
1 GA-TATTGGCTCT
100638896 TCGGAGCTAC
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
24 19 0.37
25 30 0.59
26 2 0.04
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (24 bp):
GATATTGGCTCTCTGAAACTTCCC
Found at i:100646589 original size:15 final size:15
Alignment explanation
Indices: 100646569--100646598 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
100646559 TATAACAGGA
100646569 AATAAACTTACCATT
1 AATAAACTTACCATT
100646584 AATAAACTTACCATT
1 AATAAACTTACCATT
100646599 CATTTACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAAACTTACCATT
Found at i:100647158 original size:26 final size:26
Alignment explanation
Indices: 100647096--100647181 Score: 88
Period size: 26 Copynumber: 3.4 Consensus size: 26
100647086 TTAAGCAAGC
* *
100647096 TATATCGGGAAGCTC-TAGAGAG-CT
1 TATATCGGGAAGCTCACAAAGAGCCT
* *
100647120 AATATCAGGAAGCTCACAAAGAGCCT
1 TATATCGGGAAGCTCACAAAGAGCCT
**
100647146 T-TAATCGGGAAGCTCATGAAGAGCCT
1 TAT-ATCGGGAAGCTCACAAAGAGCCT
100647172 TATATCGGGA
1 TATATCGGGA
100647182 CGTTCATAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
24 13 0.26
25 6 0.12
26 30 0.60
27 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.22
Consensus pattern (26 bp):
TATATCGGGAAGCTCACAAAGAGCCT
Found at i:100647188 original size:26 final size:25
Alignment explanation
Indices: 100647127--100647194 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 25
100647117 GCTAATATCA
*
100647127 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCA-TAAGAGCCTTTAATCG
100647153 GGAAGCTCATGAAGAGCC-TTATATCG
1 GGAAGCTCAT-AAGAGCCTTTA-ATCG
* *
100647179 GGACGTTCATAAGAGC
1 GGAAGCTCATAAGAGC
100647195 TGTGGTGTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
25 9 0.24
26 28 0.76
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (25 bp):
GGAAGCTCATAAGAGCCTTTAATCG
Found at i:100649011 original size:25 final size:25
Alignment explanation
Indices: 100648973--100649041 Score: 120
Period size: 25 Copynumber: 2.8 Consensus size: 25
100648963 AAGGCAAAGC
**
100648973 AGCAGAGGACTGCTAACGGAGGTGT
1 AGCAGAGGGTTGCTAACGGAGGTGT
100648998 AGCAGAGGGTTGCTAACGGAGGTGT
1 AGCAGAGGGTTGCTAACGGAGGTGT
100649023 AGCAGAGGGTTGCTAACGG
1 AGCAGAGGGTTGCTAACGG
100649042 CGATGCAACT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.14, G:0.42, T:0.17
Consensus pattern (25 bp):
AGCAGAGGGTTGCTAACGGAGGTGT
Found at i:100649249 original size:14 final size:14
Alignment explanation
Indices: 100649230--100649265 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
100649220 ATTTTGGGGA
* *
100649230 GGGGGAATTGATTT
1 GGGGGAAATGAATT
100649244 GGGGGAAATGAATT
1 GGGGGAAATGAATT
100649258 GGGGGAAA
1 GGGGGAAA
100649266 AGGGGAAGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.47, T:0.22
Consensus pattern (14 bp):
GGGGGAAATGAATT
Found at i:100654131 original size:4 final size:4
Alignment explanation
Indices: 100654122--100654167 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
100654112 CATGAAAGTT
* * * *
100654122 TTTA TTTA TTTA TTTA TGTA TTTA TTTA TTCA TTGA TTCA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
100654168 CTTTTTGTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:100654247 original size:15 final size:15
Alignment explanation
Indices: 100654227--100654279 Score: 65
Period size: 15 Copynumber: 3.6 Consensus size: 15
100654217 TTTTGTTGTT
100654227 ATTATTATTATTCTC
1 ATTATTATTATTCTC
* *
100654242 ATTATTATTATTGTT
1 ATTATTATTATTCTC
100654257 ATTATTTATT-TTC-C
1 ATTA-TTATTATTCTC
100654271 ATTATTATT
1 ATTATTATT
100654280 TAATTAGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 5 0.15
14 4 0.12
15 19 0.58
16 5 0.15
ACGTcount: A:0.26, C:0.08, G:0.02, T:0.64
Consensus pattern (15 bp):
ATTATTATTATTCTC
Found at i:100655779 original size:27 final size:25
Alignment explanation
Indices: 100655692--100655789 Score: 92
Period size: 25 Copynumber: 3.8 Consensus size: 25
100655682 TGTTTCTTAT
**
100655692 GAGCTTCCCGTTATACAGCTCAGATA
1 GAGCTTCCCGTTATATGGCTCAGA-A
* * *
100655718 -AGCTTCCCGTTACATGGCTCACAC
1 GAGCTTCCCGTTATATGGCTCAGAA
*
100655742 GAGCTTCCCGTTATATGGCTTGAGAGA
1 GAGCTTCCCGTTATATGGC-TCAGA-A
100655769 GAGCTTCCCGTT-TATGTGCTC
1 GAGCTTCCCGTTATATG-GCTC
100655790 GTGTGTACTA
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
25 36 0.62
26 8 0.14
27 14 0.24
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.30
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCAGAA
Found at i:100658843 original size:14 final size:14
Alignment explanation
Indices: 100658807--100658845 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
100658797 TTGTTTCACT
*
100658807 GAAAATGACTTCCG
1 GAAAATGATTTCCG
*
100658821 GAAAATGATTTCTG
1 GAAAATGATTTCCG
100658835 GAAAATGATTT
1 GAAAATGATTT
100658846 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:100660270 original size:21 final size:20
Alignment explanation
Indices: 100660246--100660284 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
100660236 AAGAAGTAAA
100660246 TAAACAAAACACATTTAATAC
1 TAAACAAAACA-ATTTAATAC
* *
100660267 TAAACCAATCAATTTAAT
1 TAAACAAAACAATTTAAT
100660285 GATATAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAACAAAACAATTTAATAC
Found at i:100661915 original size:45 final size:45
Alignment explanation
Indices: 100661763--100662502 Score: 346
Period size: 45 Copynumber: 15.8 Consensus size: 45
100661753 TAACTTGTAA
* *
100661763 CTTCAATCTGCTCCACTGTAACTTCAGGGAAATAAGATTCGCTAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * *
100661808 CTTCAGTCTGCTCCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTTTAG
1 CTTCAGTCTGCTCC-ACTGCAACTTCAGGGAAATAAGATTCG---C---TAT
* * * *
100661860 CTTCAATCTACTCCACTGCAACTTCAGGGAAATGAGATTCACTAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * * ** * **
100661905 CTTCAGTCTACTCCGCTGCAACTTTAGAGAGATAAGGCT-GGTGG
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * * *
100661949 CTTC-TTCTACTTCACTGTAACTTTAGAGAAATAAGATTCGCTAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * *
100661993 CTTTAGTCTGCTCCTACTACAACTTCAGGGAGATAAGACTCGTAACTTTTAG
1 CTTCAGTCTGCTCC-ACTGCAACTTCAGGGAAATAAGATTCG---C---TAT
* * * *
100662045 CTTTAATTTGCTCCACTGCAACTTCAGGGAAATGAGATTCGCTAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * ** *
100662090 CTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGGCT-GGT-T
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * *
100662133 GCTTCAATCTGCTTCACTGCAACTTCA-GGAAGATAAGATTCGCCATAA
1 -CTTCAGTCTGCTCCACTGCAACTTCAGGGAA-ATAAGATTCG-C-TAT
* ** * * *
100662181 CTTGTAGCTTTAACCTATTCCACTGCAACATCAGGGAAATAAGATTCACTGT
1 CTT-CAG---T---CTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * ** * **
100662233 CTTCAGGCTACTCCGCTGCAACTTCAGGGAGATAAGGCT-GGTGG
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
*
100662277 CTTCAATCTGCTCCACTGCAACTTCA-GGAAGATAAGATTCGCCATAATTTGT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAA-ATAAGATTCG-C-T-A----T
* * * * * * *
100662329 AGCTTTAATATGTTCCACTGCAACGTCAGGGAAATAAGATTCGTTGT
1 --CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * * * * **
100662376 CTTCAGTTTGCTCCGCTACAACTTCAAGGAGATAAGGTT-GGTGG
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * *
100662420 CTTCAATCTGCTCCACTGCAACTTCAGGAAAAAAATATTCGCCAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * *
100662465 CTTC-GATCTACTCCACTGCAACTTCAAGGAGATAAGAT
1 CTTCAG-TCTGCTCCACTGCAACTTCAGGGAAATAAGAT
100662503 CGACAACTTC
Statistics
Matches: 511, Mismatches: 140, Indels: 88
0.69 0.19 0.12
Matches are distributed among these distances:
43 34 0.07
44 102 0.20
45 172 0.34
46 45 0.09
47 6 0.01
48 3 0.01
49 2 0.00
51 49 0.10
52 33 0.06
53 1 0.00
54 56 0.11
55 8 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (45 bp):
CTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
Found at i:100661992 original size:185 final size:185
Alignment explanation
Indices: 100661763--100662175 Score: 630
Period size: 185 Copynumber: 2.2 Consensus size: 185
100661753 TAACTTGTAA
* * *
100661763 CTTCAATCTGCTCCACTGTAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCTACTGC
1 CTTCAATCTACTTCACTGTAACTTCA-GGAAATAAGATTCGCTATCTTCAGTCTGCTCCTACTAC
100661828 AACTTCAGGGAGATAAGACTCGCAACTTTTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAAT
65 AACTTCAGGGAGATAAGACTCGCAACTTTTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAAT
* *
100661893 GAGATTCACTATCTTCAGTCTACTCCGCTGCAACTTTAGAGAGATAAGGCTGGTGG
130 GAGATTCACTATCTTCAGTCTACTCCGCTACAACTTCAGAGAGATAAGGCTGGTGG
* * *
100661949 CTTC-TTCTACTTCACTGTAACTTTAGAGAAATAAGATTCGCTATCTTTAGTCTGCTCCTACTAC
1 CTTCAATCTACTTCACTGTAACTTCAG-GAAATAAGATTCGCTATCTTCAGTCTGCTCCTACTAC
* * * *
100662013 AACTTCAGGGAGATAAGACTCGTAACTTTTAGCTTTAATTTGCTCCACTGCAACTTCAGGGAAAT
65 AACTTCAGGGAGATAAGACTCGCAACTTTTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAAT
* * * *
100662078 GAGATTCGCTATCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGGCTGGTTG
130 GAGATTCACTATCTTCAGTCTACTCCGCTACAACTTCAGAGAGATAAGGCTGGTGG
* *
100662134 CTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATTCGC
1 CTTCAATCTACTTCACTGTAACTTCAGGAA-ATAAGATTCGC
100662176 CATAACTTGT
Statistics
Matches: 204, Mismatches: 20, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
184 1 0.00
185 170 0.83
186 33 0.16
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (185 bp):
CTTCAATCTACTTCACTGTAACTTCAGGAAATAAGATTCGCTATCTTCAGTCTGCTCCTACTACA
ACTTCAGGGAGATAAGACTCGCAACTTTTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAATG
AGATTCACTATCTTCAGTCTACTCCGCTACAACTTCAGAGAGATAAGGCTGGTGG
Found at i:100662294 original size:143 final size:143
Alignment explanation
Indices: 100661999--100662464 Score: 659
Period size: 143 Copynumber: 3.3 Consensus size: 143
100661989 CTATCTTTAG
* * * * * *
100661999 TCTGCTCCTACTACAACTTCAGGGAGATAAGACTCG---TAACTTTTAGCTTTAATTTGCTCCAC
1 TCTGCTCC-ACTGCAACTTCAGGAAGATAAGATTCGCCATAACTTGTAGCTTTAATATGTTCCAC
* * *
100662061 TGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAG
65 TGCAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAG
*
100662126 GCTGGTTGCTTCAA
130 GCTGGTGGCTTCAA
* ** *
100662140 TCTGCTTCACTGCAACTTCAGGAAGATAAGATTCGCCATAACTTGTAGCTTTAACCTATTCCACT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAACTTGTAGCTTTAATATGTTCCACT
* * * *
100662205 GCAACATCAGGGAAATAAGATTCACTGTCTTCAGGCTACTCCGCTGCAACTTCAGGGAGATAAGG
66 GCAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGG
100662270 CTGGTGGCTTCAA
131 CTGGTGGCTTCAA
*
100662283 TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAATTTGTAGCTTTAATATGTTCCACT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAACTTGTAGCTTTAATATGTTCCACT
* * * *
100662348 GCAACGTCAGGGAAATAAGATTCGTTGTCTTCAGTTTGCTCCGCTACAACTTCAAGGAGATAAGG
66 GCAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGG
*
100662413 TTGGTGGCTTCAA
131 CTGGTGGCTTCAA
* * *
100662426 TCTGCTCCACTGCAACTTCAGGAAAAAAATATTCGCCAT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCAT
100662465 CTTCGATCTA
Statistics
Matches: 288, Mismatches: 34, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
140 24 0.08
141 7 0.02
143 257 0.89
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (143 bp):
TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAACTTGTAGCTTTAATATGTTCCACT
GCAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGG
CTGGTGGCTTCAA
Found at i:100662298 original size:44 final size:44
Alignment explanation
Indices: 100662243--100662447 Score: 140
Period size: 44 Copynumber: 4.4 Consensus size: 44
100662233 CTTCAGGCTA
*
100662243 CTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTG
* * * * *
100662287 CTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAATTTGTAGCTTTAATATG
1 CTCCACTGCAACTTCAGGGAGATAAG----G-C-----TGGTGGCTTCAATCTG
* * * ** * * * *
100662341 TTCCACTGCAACGTCAGGGAAATAAGATTCGTTGTCTTCAGTTTG
1 CTCCACTGCAACTTCAGGGAGATAAGGCT-GGTGGCTTCAATCTG
* * * *
100662386 CTCCGCTACAACTTCAAGGAGATAAGGTTGGTGGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTG
100662430 CTCCACTGCAACTTCAGG
1 CTCCACTGCAACTTCAGG
100662448 AAAAAAATAT
Statistics
Matches: 117, Mismatches: 33, Indels: 22
0.68 0.19 0.13
Matches are distributed among these distances:
44 51 0.44
45 30 0.26
48 1 0.01
49 1 0.01
54 34 0.29
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTG
Found at i:100663229 original size:102 final size:102
Alignment explanation
Indices: 100663053--100663244 Score: 384
Period size: 102 Copynumber: 1.9 Consensus size: 102
100663043 TATTAGGAAC
100663053 AAAATCTTAAAAGAATGGATTAATGAAAGAAAGCAAACATTGCTGGAATACAAAATAGGTGAGAG
1 AAAATCTTAAAAGAATGGATTAATGAAAGAAAGCAAACATTGCTGGAATACAAAATAGGTGAGAG
100663118 GAAAAATTAATTCTTACCCACTATCATCTTTGCATAT
66 GAAAAATTAATTCTTACCCACTATCATCTTTGCATAT
100663155 AAAATCTTAAAAGAATGGATTAATGAAAGAAAGCAAACATTGCTGGAATACAAAATAGGTGAGAG
1 AAAATCTTAAAAGAATGGATTAATGAAAGAAAGCAAACATTGCTGGAATACAAAATAGGTGAGAG
100663220 GAAAAATTAATTCTTACCCACTATC
66 GAAAAATTAATTCTTACCCACTATC
100663245 GAGTGAAAAT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 90 1.00
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.25
Consensus pattern (102 bp):
AAAATCTTAAAAGAATGGATTAATGAAAGAAAGCAAACATTGCTGGAATACAAAATAGGTGAGAG
GAAAAATTAATTCTTACCCACTATCATCTTTGCATAT
Found at i:100663936 original size:16 final size:15
Alignment explanation
Indices: 100663915--100663962 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
100663905 GATGTGAATA
100663915 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
100663931 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
100663946 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
100663962 A
1 A
100663963 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:100663938 original size:24 final size:24
Alignment explanation
Indices: 100663911--100663966 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
100663901 TAATGATGTG
*
100663911 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
100663935 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
100663959 AATAATAA
1 AATAATAA
100663967 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:100663945 original size:8 final size:8
Alignment explanation
Indices: 100663911--100663962 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
100663901 TAATGATGTG
*
100663911 AATAATAA
1 AATATTAA
100663919 AATATATAA
1 AATAT-TAA
100663928 AATA-TAA
1 AATATTAA
100663935 AATATTAA
1 AATATTAA
*
100663943 AATATCAA
1 AATATTAA
*
100663951 AATATTAG
1 AATATTAA
100663959 AATA
1 AATA
100663963 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:100664179 original size:22 final size:24
Alignment explanation
Indices: 100664116--100664180 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
100664106 CGTGATAATA
*
100664116 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
100664141 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
100664164 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
100664181 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:100664205 original size:30 final size:29
Alignment explanation
Indices: 100664169--100664236 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
100664159 TATAGTTAAG
*
100664169 ATATATACATAAGATAACATGTAAAAATAT
1 ATATATAAATAAGATAACAT-TAAAAATAT
* * *
100664199 ATATATAAATAATATAATATTAAAGATAT
1 ATATATAAATAAGATAACATTAAAAATAT
*
100664228 ATACATAAA
1 ATATATAAA
100664237 ATAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAAAATAT
Found at i:100664227 original size:25 final size:25
Alignment explanation
Indices: 100664199--100664334 Score: 72
Period size: 25 Copynumber: 5.6 Consensus size: 25
100664189 GTAAAAATAT
100664199 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * * *
100664224 ATATATACATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
*
100664249 ATATATATACACGTAATATAGA-ATTTAA-
1 ATATATA-A-A--TAATATA-ATATTAAAG
** *
100664277 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
100664299 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
100664322 AAATAT-AATAATA
1 ATATATAAATAATA
100664335 ACAAAAAATG
Statistics
Matches: 83, Mismatches: 18, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
21 4 0.05
22 12 0.14
23 18 0.22
24 5 0.06
25 27 0.33
27 6 0.07
28 1 0.01
29 10 0.12
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:100664282 original size:52 final size:52
Alignment explanation
Indices: 100664191--100664317 Score: 127
Period size: 52 Copynumber: 2.4 Consensus size: 52
100664181 GATAACATGT
100664191 AAAAATATATATATAAATAATATAATATTAAAGATATATACATAAAATAGTA
1 AAAAATATATATATAAATAATATAATATTAAAGATATATACATAAAATAGTA
* * * * * *
100664243 TAAAATATATATATACACGTAATATAGA-ATTTAA-A-ATATACCTAATATATTA
1 AAAAATATATATATA-A-ATAATATA-ATATTAAAGATATATACATAAAATAGTA
*
100664295 AAAGAATATATATA-ATATAATAT
1 AAA-AATATATATATAAATAATAT
100664318 TAAGAAATAT
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
50 6 0.10
52 31 0.50
53 12 0.19
54 12 0.19
55 1 0.02
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (52 bp):
AAAAATATATATATAAATAATATAATATTAAAGATATATACATAAAATAGTA
Found at i:100664856 original size:30 final size:30
Alignment explanation
Indices: 100664820--100664993 Score: 287
Period size: 30 Copynumber: 5.8 Consensus size: 30
100664810 TAGGTACAAG
* *
100664820 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
100664850 TGGTGGTGGAAAA-GAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
100664879 TGGTGGTGGAAAAGGTGTGGCTAATGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
100664909 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
100664939 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
100664969 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
100664994 TGAGAAAAGT
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
29 28 0.21
30 105 0.79
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:100665759 original size:14 final size:14
Alignment explanation
Indices: 100665740--100665789 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
100665730 GAGTTGATTT
* *
100665740 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
100665754 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
100665769 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
100665783 TT-AAAAA
1 TTGAAAAA
100665790 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:100665921 original size:75 final size:75
Alignment explanation
Indices: 100665769--100666009 Score: 310
Period size: 76 Copynumber: 3.2 Consensus size: 75
100665759 AAAACAGAAA
* * * *
100665769 TTGA-AAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGGAATA
1 TTGACAAA-CAGAAATTAAAAATACCTCAGCATGT--CCCGAGGCTCAACTCACCTCTCGCAATA
*
100665833 TGAGTT-A-ATTT
63 TGAGTTGATTTTT
* * *
100665844 TTGACAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGACAAACAGAAATTAAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
100665909 GTTGATTTTT
66 GTTGATTTTT
* * *
100665919 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAA-TTAAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATG
100665984 AGTTGATTTTT
65 AGTTGATTTTT
*
100665995 TT-ACGAACAGAAATT
1 TTGACAAACAGAAATT
100666010 GAAGAACAGA
Statistics
Matches: 146, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
73 30 0.21
74 3 0.02
75 52 0.36
76 61 0.42
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (75 bp):
TTGACAAACAGAAATTAAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:100666018 original size:14 final size:14
Alignment explanation
Indices: 100665999--100666026 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100665989 ATTTTTTTAC
100665999 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100666013 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100666027 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:100666071 original size:90 final size:88
Alignment explanation
Indices: 100665919--100666102 Score: 255
Period size: 89 Copynumber: 2.1 Consensus size: 88
100665909 GTTGATTTTT
* *
100665919 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
100665984 AGTTGATTTTTTTACGAACAGAAA
66 AGTT-AATTTTTGACAAACAGAAA
* *
100666008 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
100666071 ATGAGTTAATTTTTGACAAACAGAAA
63 ATGAGTTAATTTTTGACAAACAGAAA
100666097 TTGAAA
1 TTGAAA
100666103 TTACCTCAGC
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
88 14 0.17
89 34 0.40
90 34 0.40
91 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTGACAAACAGAAA
Found at i:100666142 original size:73 final size:74
Alignment explanation
Indices: 100666008--100666176 Score: 216
Period size: 73 Copynumber: 2.3 Consensus size: 74
100665998 CGAACAGAAA
* *
100666008 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCTCAAATCACCTCTCGCAATAT
100666073 GAGTTAATTT
65 GAGTTAATTT
* ** * *
100666083 TTGACAAACAGAAATTGAAATTACCTCAGC-GTG-TCTCGAGGCTCAAATCACCTTTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGAGC-CGAGGCTCAAATCACCTCTCGCAATAT
*
100666146 GAGTTGATTT
65 GAGTTAATTT
* *
100666156 TTGAAAAATATAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
100666177 AACAGAAATT
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
72 1 0.01
73 54 0.67
75 26 0.32
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCTCAAATCACCTCTCGCAATATG
AGTTAATTT
Found at i:100666175 original size:14 final size:14
Alignment explanation
Indices: 100666156--100666205 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
100666146 GAGTTGATTT
* *
100666156 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
100666170 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
100666185 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
100666199 TT-AAAAA
1 TTGAAAAA
100666206 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:100666302 original size:177 final size:175
Alignment explanation
Indices: 100666000--100666514 Score: 698
Period size: 177 Copynumber: 3.0 Consensus size: 175
100665990 TTTTTTTACG
100666000 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAA-AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* * *
100666065 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTCGAGGCTCAAA
65 CGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
*
100666130 TCACCTTTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAA
130 TCACCTCTCGCAATATGAGTTGATTTTTG-AAAATATAAATTGAAAA
* *
100666177 AACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCT
1 AACAGAAATTGAAAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
100666242 CGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
65 CGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
*
100666307 TCACCTCTCGCAATATGAGTCGA----T-----T-T---TTG-AAA
130 TCACCTCTCGCAATATGAGTTGATTTTTGAAAATATAAATTGAAAA
* * *
100666339 AACAGAAATTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCT
1 AACAGAAATTGAAAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* * * * * ** * *
100666404 TGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCATCGTGTCCTGAGGCTCAAC
65 CGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* *
100666469 TCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAA
130 TCACCTCTCGCAATATGAGTTGATTTTTGA-AAATATAAATTGAAA
100666515 TTACCTCAGC
Statistics
Matches: 297, Mismatches: 25, Indels: 32
0.84 0.07 0.09
Matches are distributed among these distances:
162 140 0.47
163 3 0.01
166 2 0.01
167 1 0.00
173 1 0.00
176 5 0.02
177 145 0.49
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (175 bp):
AACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTC
GCAATATGAGTTAATTTTTGATAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAATATAAATTGAAAA
Found at i:100666352 original size:14 final size:14
Alignment explanation
Indices: 100666333--100666367 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
100666323 GAGTCGATTT
100666333 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
100666347 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
100666361 TTGAAAA
1 TTGAAAA
100666368 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:100666422 original size:89 final size:87
Alignment explanation
Indices: 100666260--100666444 Score: 241
Period size: 89 Copynumber: 2.1 Consensus size: 87
100666250 GAGTTAATTT
* *
100666260 TTGATAAA-CAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATG
*
100666324 AGTCGATTTTTGAAAAACAGAAA
65 AGTCAATTTTTGAAAAACAGAAA
* *
100666347 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGT--CCCAAGGCTCAACTCACCTCTCGCAATAT
** *
100666412 GAG-CTAATTTTTGATGAACATAAA
64 GAGTC-AATTTTTGAAAAACAGAAA
100666436 TT-AAAACCA
1 TTGAAAACCA
100666445 CCTCATCGTG
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
86 3 0.03
87 29 0.34
88 8 0.09
89 46 0.53
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.25
Consensus pattern (87 bp):
TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
GTCAATTTTTGAAAAACAGAAA
Found at i:100666457 original size:162 final size:162
Alignment explanation
Indices: 100666174--100666514 Score: 520
Period size: 162 Copynumber: 2.1 Consensus size: 162
100666164 TATAAATTGA
* *
100666174 AAAAACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACC
1 AAAAACAGAAATTGAAAACCAGAAATTAAAAAGACCTCAGCATGTGAGCCAAGACTCAACTCACC
* * **
100666239 TCTCGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTC
66 TCTCGCAATATGAGCTAATTTTTGATAAACAGAAATTAAAACCACCTCAGCGTGTCCCGAGGCTC
100666304 AACTCACCTCTCGCAATATGAGTCGATTTTTG
131 AACTCACCTCTCGCAATATGAGTCGATTTTTG
* * * *
100666336 AAAAACAGAAATTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACC
1 AAAAACAGAAATTGAAAACCAGAAATTAAAAAGACCTCAGCATGTGAGCCAAGACTCAACTCACC
* * * * *
100666401 TCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCATCGTGTCCTGAGGCTC
66 TCTCGCAATATGAGCTAATTTTTGATAAACAGAAATTAAAACCACCTCAGCGTGTCCCGAGGCTC
*
100666466 AACTCACCTCTCGCAATATGAGTTGATTTTTG
131 AACTCACCTCTCGCAATATGAGTCGATTTTTG
* *
100666498 ACAAACAAAAATTGAAA
1 AAAAACAGAAATTGAAA
100666515 TTACCTCAGC
Statistics
Matches: 161, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
162 161 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (162 bp):
AAAAACAGAAATTGAAAACCAGAAATTAAAAAGACCTCAGCATGTGAGCCAAGACTCAACTCACC
TCTCGCAATATGAGCTAATTTTTGATAAACAGAAATTAAAACCACCTCAGCGTGTCCCGAGGCTC
AACTCACCTCTCGCAATATGAGTCGATTTTTG
Found at i:100666482 original size:73 final size:71
Alignment explanation
Indices: 100666387--100666586 Score: 238
Period size: 73 Copynumber: 2.8 Consensus size: 71
100666377 GTGTGAGCCA
* * *
100666387 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCATC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCA--
**
100666452 GTGTCCTG
64 GCATCCTG
** * * **
100666460 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
*
100666525 ATCTTG
66 ATCCTG
* **
100666531 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATG-AACATAAATTAAAA
100666587 AAATGAAAAT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
71 41 0.38
72 12 0.11
73 54 0.50
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.32
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
ATCCTG
Found at i:100666653 original size:79 final size:72
Alignment explanation
Indices: 100666578--100666719 Score: 214
Period size: 72 Copynumber: 2.0 Consensus size: 72
100666568 TTTGAAACAT
* * *
100666578 AAATTAAAA-AAATGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCGACTCACCTCTCGCAA
1 AAATTAAAACAAA--AAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAA
100666642 TATGAGTTG
64 TATGAGTTG
* *
100666651 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATA
1 AAATTAAAACAAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
100666716 TGAG
66 TGAG
100666720 CTGATTTTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
72 52 0.83
73 9 0.14
74 2 0.03
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (72 bp):
AAATTAAAACAAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTG
Found at i:100666746 original size:160 final size:157
Alignment explanation
Indices: 100666444--100666733 Score: 388
Period size: 160 Copynumber: 1.8 Consensus size: 157
100666434 AATTAAAACC
* ** *
100666444 ACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAA
* ** * *
100666509 TTGAAATTACCTCAGCATCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAA
66 TTGAAAATACCTCAGCATCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTTGAA
*
100666574 ACATAAATTAAAAAAATGAAAATTGAAAAT
128 AAATAAATTAAAAAAATGAAAATTGAAAAT
*
100666604 ACCTCAGCGTGTCCTGAGGCTCGACTCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAA-ACAAAA
* *
100666667 ATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAA
65 ATTGAAAATACCTCAGCAT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAA
100666731 AAA
128 AAA
100666734 GTAGAAATTA
Statistics
Matches: 114, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
157 9 0.08
158 3 0.03
159 25 0.22
160 46 0.40
161 31 0.27
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (157 bp):
ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAA
TTGAAAATACCTCAGCATCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAA
TAAATTAAAAAAATGAAAATTGAAAAT
Found at i:100666977 original size:78 final size:75
Alignment explanation
Indices: 100666873--100667209 Score: 439
Period size: 76 Copynumber: 4.5 Consensus size: 75
100666863 AGTGTGTAAT
* *
100666873 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAACAGAAATTGAAAATAC
*
100666938 CTCAGCATGTGAAC
65 CTCAGC--GTG-TC
*
100666952 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAACAGAAATTGAAAATAC
*
100667016 CTCAACGTGTC
65 CTCAGCGTGTC
* ** * * *
100667027 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGAAAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
100667089 TCAGCGTGTC
66 TCAGCGTGTC
* * *
100667099 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA-AAACAGAAATTGAAAATAC
100667164 CTCAGCGTGTC
65 CTCAGCGTGTC
* * *
100667175 CTGAGGCTCAACTCACCTCTAGCAAAATGAATTGA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
100667210 AAAAAATACC
Statistics
Matches: 232, Mismatches: 21, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
72 65 0.28
75 6 0.03
76 95 0.41
78 65 0.28
79 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (75 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
TCAGCGTGTC
Found at i:100667183 original size:359 final size:356
Alignment explanation
Indices: 100666756--100668631 Score: 1959
Period size: 359 Copynumber: 5.1 Consensus size: 356
100666746 AGGTTCAAAC
* * * * *
100666756 CACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACATCATCGTGTCCTGAG
1 CACCTCTCGCAATATGAGTTGATTTTTTACGAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
100666821 GCTCAACTCACCTCTCGCAATATGAATTGAAAAAAATACCACAGTGTGTAATCTGAAGCTCAACT
66 GCTCAACTCACCTCTCGCAATATGAATTGAAAAAAATACCACAGTGTGTAATCTGAAGCTCAACT
*
100666886 CACCTCTCGCAATATGAGTTGATTTTTTTTTTAAAACAGAAATTGAAAATACCTCAGCATGTGAA
131 CACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGTGAA
100666951 CCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
196 CCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
100667016 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTG
261 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTG
100667081 AAATTACCTCAGCGTGTCCTGAGGCTCAACT
326 AAATTACCTCAGCGTGTCCTGAGGCTCAACT
100667112 CACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAATTACCTCAGCGTGTCCT
1 CACCTCTCGCAATATGAGTTGA---TTTTTTACGAACAGAAATTGAAATTACCTCAGCGTGTCCT
* *
100667177 GAGGCTCAACTCACCTCTAGCAAAATGAATTGAAAAAAATACCACAGTGTGTAATCTGAAGCTCA
63 GAGGCTCAACTCACCTCTCGCAATATGAATTGAAAAAAATACCACAGTGTGTAATCTGAAGCTCA
100667242 ACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGT
128 ACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGT
100667306 GAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAA
193 GAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTTTGAAAACAGAAATTGAAA
100667371 ATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAA
257 ATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAA
*
100667436 ATTGAAATTACCTCAGCATGTCCTGAGGCTCAACT
322 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
**
100667471 CATTTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGAC
1 CACCTCTCGCAATATGAGTTGA--TTTTTTACGAACAGAAATT--------GAAATT------AC
*
100667536 CTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAA
50 CTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATAT--G--AA---TTG------A-AA
* * * * * *
100667600 ATTGAAATTACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTG
98 A---AAA-TACCACAGTGTGTAATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-
* * * * * * *
100667663 AAAAACAGAAATTGAAAACCAGAAATTGAAAGTACCTCAGCGTGTGAGCCAAGGCTCAACTCACC
158 ----------TTTTAAAAACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACC
* * * * ** * * * *
100667728 TCTTGCAATATGAGCT-AATTTTTGATG--AACATAAATT-AAAACCACCTCAGCGTGTCCTGAG
213 TCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAG
** * * *
100667789 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGT
277 GCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAGCGT
100667854 GTCCTGAGGCTCAACT
341 GTCCTGAGGCTCAACT
* * * * * **
100667870 CAACTCTAGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAG
1 CACCTCTCGCAATATGAGTTGATTTTTTACGAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
* ** * * *** *
100667935 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGT
66 GCTCAACTCACCTCTCGCAATATGA----A---TTGA-AAA-AAATA-CCACAGTGTGT-A--AT
* * *
100668000 CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTCTTTTTGAAACATAAATTAAAAAAACG
118 C-TGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTTT------T---TTAAAAACA-G
* *
100668065 AAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCATCTCTCGCAATATGAA-TTGA-
170 -AAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATAT-AAGTTGAT
** * * * * ** ** *
100668125 ----AATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCA
232 TTTTTTTTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCA
* * * * * *
100668186 ATATGAGCTG-ATTTTGAAAA-AG---TAGAAATTA----A---------AAGGTTCAACC
296 ATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
* * * *
100668229 CACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAG
1 CACCTCTCGCAATATGAGTTGATTTTTTACGAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
100668294 GCTCAACTCACCTCTCGCAATATGAATTGAAAAAAATACCACAGTGTGTAATCTGAAGCTCAACT
66 GCTCAACTCACCTCTCGCAATATGAATTGAAAAAAATACCACAGTGTGTAATCTGAAGCTCAACT
***
100668359 CACCTCTCGCAATATGAGTTGATTTTTTAAAAAAAACAGAAATTGAAAATACCTCAGCATGTGAA
131 CACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGTGAA
100668424 CCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
196 CCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTTTGAAAACAGAAATTGAAAATA
100668489 CCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATT
260 CCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATT
100668554 GAAATTACCTCAGCGTGTCCTGAGGCTCAACT
325 GAAATTACCTCAGCGTGTCCTGAGGCTCAACT
100668586 CACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAA
1 CACCTCTCGCAATATGAGTTGA--TTTTTTACGAACAGAAATTGAA
100668632 GAACAGAAAT
Statistics
Matches: 1262, Mismatches: 143, Indels: 227
0.77 0.09 0.14
Matches are distributed among these distances:
332 19 0.02
333 3 0.00
334 38 0.03
335 2 0.00
339 52 0.04
340 15 0.01
341 2 0.00
343 5 0.00
344 9 0.01
345 32 0.03
346 2 0.00
348 2 0.00
349 4 0.00
350 4 0.00
351 3 0.00
352 4 0.00
355 1 0.00
356 22 0.02
357 30 0.02
358 97 0.08
359 374 0.30
366 6 0.00
368 1 0.00
372 17 0.01
373 5 0.00
374 27 0.02
375 8 0.01
376 5 0.00
377 8 0.01
378 56 0.04
379 69 0.05
380 6 0.00
381 61 0.05
383 8 0.01
387 1 0.00
388 3 0.00
389 3 0.00
390 32 0.03
391 7 0.01
392 11 0.01
397 21 0.02
398 58 0.05
399 60 0.05
400 7 0.01
401 1 0.00
402 61 0.05
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (356 bp):
CACCTCTCGCAATATGAGTTGATTTTTTACGAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
GCTCAACTCACCTCTCGCAATATGAATTGAAAAAAATACCACAGTGTGTAATCTGAAGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGTGAA
CCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTG
AAATTACCTCAGCGTGTCCTGAGGCTCAACT
Found at i:100667334 original size:77 final size:75
Alignment explanation
Indices: 100667237--100667516 Score: 336
Period size: 72 Copynumber: 3.7 Consensus size: 75
100667227 GTAATCTGAA
*
100667237 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACCTCAGC
100667302 ATGTGAACCGAG
66 ATGTG--CCGAG
*
100667314 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTTTTTAAAAACAGAAATTGAAAATACCTCA
* * *
100667379 ACGTGT-CTTGAG
64 GCATGTGC-CGAG
** * * *
100667391 GCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCAGC
1 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACCTCAGC
100667453 ATGT-CCTGAG
66 ATGTGCC-GAG
** * **
100667463 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAA
1 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAAAAACAGAAATTGAA
100667517 GAACAGAAAT
Statistics
Matches: 179, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
72 65 0.36
75 17 0.09
76 1 0.01
77 60 0.34
79 36 0.20
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (75 bp):
GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACCTCAGC
ATGTGCCGAG
Found at i:100667522 original size:14 final size:14
Alignment explanation
Indices: 100667503--100667530 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100667493 TTTTTTTTAC
100667503 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100667517 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100667531 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:100667587 original size:91 final size:86
Alignment explanation
Indices: 100667424--100667606 Score: 242
Period size: 89 Copynumber: 2.1 Consensus size: 86
100667414 AAGTTGAATT
** **
100667424 TTGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
100667489 TTGATTTTTTTTACGAACAGAAA
66 TT-A-ATTTTTGACAAACAGAAA
100667512 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAA-AACAGAAATTGAAAAGACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGCAATA
100667576 TGAGTTAATTTTTGACAAACAGAAA
62 TGAGTTAATTTTTGACAAACAGAAA
100667601 TTGAAA
1 TTGAAA
100667607 TTACCTCAGC
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
88 6 0.07
89 46 0.55
90 1 0.01
91 29 0.35
92 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (86 bp):
TTGAAAACAGAAATTGAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTAATTTTTGACAAACAGAAA
Found at i:100667643 original size:73 final size:74
Alignment explanation
Indices: 100667512--100667680 Score: 250
Period size: 73 Copynumber: 2.3 Consensus size: 74
100667502 CGAACAGAAA
* *
100667512 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
100667577 GAGTTAATTT
65 GAGTCAATTT
* ** *
100667587 TTGACAAACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
*
100667651 AGTCGATTT
66 AGTCAATTT
100667660 TTGAAAAACAGAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
100667681 CCAGAAATTG
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
73 58 0.69
75 26 0.31
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTCAATTT
Found at i:100667679 original size:14 final size:14
Alignment explanation
Indices: 100667660--100667693 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
100667650 GAGTCGATTT
100667660 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
100667674 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
100667688 TTGAAA
1 TTGAAA
100667694 GTACCTCAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:100667738 original size:162 final size:155
Alignment explanation
Indices: 100667237--100669092 Score: 967
Period size: 161 Copynumber: 11.7 Consensus size: 155
100667227 GTAATCTGAA
* * * *
100667237 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGATAAACAGAAATTGAAACTACCTCAGC
* * ***
100667302 ATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT------TTTTTGAAAAC
64 --GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTGAAAAC
* * *
100667360 AGAAATTGAAAATACCTCAACGTGTCTTGAG
126 AGAAATTGAAAGTACCTCAGCGTGTC-CGAG
** * * *
100667391 GCTCAACTCATTTCTCGCAATATAAGTTGAA-TTTTGA-AAACAGAAATTGAAATTACCTCAGCA
1 GCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGATAAACAGAAATTGAAACTACCTCAGCG
** *
100667454 TGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGA
65 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGA--AACA-AAATTGAA-A
*
100667519 ACAGAAATTGAAAAG-ACCTCAGCATGTGAGCCGAG
124 ACAGAAATTG-AAAGTACCTCAGC--GTG-TCCGAG
* *
100667554 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAACTACCTCAGCGT
* *
100667619 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTGAAAACCA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAACA-AAATTGAAAA-CA
*
100667684 GAAATTGAAAGTACCTCAGCGTGTGAGCCAAG
127 GAAATTGAAAGTACCTCAGCGTGT---CCGAG
* * * * * *
100667716 GCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAACTACCTCAGCGT
*
100667781 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AC--------AAACAAAAA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTGAAAACAGAAA
*
100667836 TTGAAATTACCTCAGCGTGTCCTGAG
131 TTGAAAGTACCTCAGCGTGTCC-GAG
* * * * * * * *
100667862 GCTCAACTCAACTCTAGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAACTACCTCAGCGT
*
100667927 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AC--------AAACAAAAA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTGAAAACAGAAA
* * *
100667982 TTGAAATTACCTCAGCGTCT-TGAG
131 TTGAAAGTACCTCAGCGTGTCCGAG
* * *
100668006 GCTCAACTCACTTCTCGCAATATGAGTTGATTCTTTTTGAAACATAAATTAAAAAAACGAAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTT-A--ATTTTTG--------A-T--AAACA-G-AAATT
* *
100668071 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGA----A---TTG-----
50 GAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACA
* * * *
100668124 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAG
115 AAATTGAAA-ACAGAAATTGAAAGTACCTCAGCGTG-TCCGAG
* * * * * * *
100668167 GCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAAAAAGTAGAAATTAAAAGGTTCAACC-C
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGATAAA-CAGAAATTGAAA----CTACCTC
* * ** ** * * * **
100668230 A-CCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAAT-T-GAAATTACCTCA-TCG-TGTCC
61 AGCGTGTC-C----TGAG--G---C-T--C-AACTCACCTCTCGCAA-TA--TGAGTTGAT-TTT
** ** * * *** * * * * * * *
100668290 TGAGGCTCAACTCACCTCTCGCAATATGAATTGAAAAAAATACCACAGTGTGTAATCTGAA
108 TGAAACAAAATTGAAAAC-AGAAAT-TGAA--------AGTACCTCAGCGTG---TCCGAG
* * * *
100668351 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAAAACAGAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTT-AATTTTT--GATAAACAGAAATTGAAACTACCTCAG
* * ***
100668416 CATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT------TTTTTGAAAA
63 C--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTGAAAA
* * *
100668474 CAGAAATTGAAAATACCTCAACGTGTCTTGAG
125 CAGAAATTGAAAGTACCTCAGCGTGTC-CGAG
** * *
100668506 GCTCAACTCATTTCTCGCAATATAAGTTGAA-TTTTGA-AAACAGAAATTGAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGATAAACAGAAATTGAAACTACCTCAGCG
*
100668569 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGA
65 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGA--AACA-AAATTGAA-A
*
100668634 ACAGAAATTGAAAAG-ACCTCAGCATGTGAGCCGAG
124 ACAGAAATTG-AAAGTACCTCAGC--GTG-TCCGAG
* *
100668669 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAACTACCTCAGCGT
* * *
100668734 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTGAAAAACAGAAATTGAAAACCT
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAACA-AAATTGAAAA-CA
*
100668798 GAAATTGAAAGTACCTCAGCGTGTGAGCCAAG
127 GAAATTGAAAGTACCTCAGCGTGT---CCGAG
* * * * * * *
100668830 GCTCAACTCACCTCTTGCAATATGAGCTAATTTTTTATGAACATAAATTAAAACCACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAACTACCTCAGCGT
* *
100668895 GTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTG--AC--------AAACAAAAA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTGAAAACAGAAA
* * *
100668950 TTGAAATTACCTCAGCGTCT-TGAG
131 TTGAAAGTACCTCAGCGTGTCCGAG
* * *
100668974 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAACGAAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTT-A--ATTTTTG--------A-T--AAACA-G-AAATT
*
100669039 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
50 GAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
100669093 AATTAAAACA
Statistics
Matches: 1357, Mismatches: 189, Indels: 306
0.73 0.10 0.17
Matches are distributed among these distances:
144 55 0.04
145 11 0.01
146 140 0.10
147 15 0.01
148 53 0.04
149 77 0.06
151 58 0.04
152 10 0.01
153 3 0.00
154 34 0.03
155 32 0.02
156 3 0.00
157 17 0.01
158 13 0.01
159 30 0.02
160 128 0.09
161 203 0.15
162 155 0.11
163 75 0.06
164 126 0.09
165 4 0.00
166 4 0.00
167 3 0.00
168 2 0.00
172 3 0.00
173 16 0.01
174 9 0.01
175 3 0.00
176 1 0.00
177 1 0.00
180 1 0.00
182 15 0.01
183 3 0.00
184 31 0.02
185 1 0.00
186 4 0.00
187 12 0.01
188 6 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (155 bp):
GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGATAAACAGAAATTGAAACTACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAAAATTGAAAACAGAAA
TTGAAAGTACCTCAGCGTGTCCGAG
Found at i:100667749 original size:89 final size:87
Alignment explanation
Indices: 100667587--100667771 Score: 241
Period size: 89 Copynumber: 2.1 Consensus size: 87
100667577 GAGTTAATTT
* *
100667587 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAACCAGAAATTGAAAGTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATG
*
100667651 AGTCGATTTTTGAAAAACAGAAA
65 AGTCAATTTTTGAAAAACAGAAA
* *
100667674 TTGAAAACCAGAAATTGAAAGTACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAACCAGAAATTGAAAGTACCTCAGCGTGT--CCCAAGGCTCAACTCACCTCTCGCAATAT
** *
100667739 GAG-CTAATTTTTGATGAACATAAA
64 GAGTC-AATTTTTGAAAAACAGAAA
100667763 TT-AAAACCA
1 TTGAAAACCA
100667772 CCTCAGCGTG
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
86 3 0.03
87 29 0.34
88 8 0.09
89 46 0.53
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.25
Consensus pattern (87 bp):
TTGAAAACCAGAAATTGAAAGTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
GTCAATTTTTGAAAAACAGAAA
Found at i:100667809 original size:73 final size:73
Alignment explanation
Indices: 100667714--100668059 Score: 464
Period size: 73 Copynumber: 4.8 Consensus size: 73
100667704 GTGTGAGCCA
* * *
100667714 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
100667779 GTGTCCTG
66 GTGTCCTG
** * * **
100667787 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
100667852 GTGTCCTG
66 GTGTCCTG
* * *
100667860 AGGCTCAACTCAACTCTAGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
100667925 GTGTCCTG
66 GTGTCCTG
** * * **
100667933 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
*
100667998 --GTCTTG
66 GTGTCCTG
* *
100668004 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTCTTT-TTGAAACATAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTGATG-AACATAAATTAAAA
100668060 AAACGAAAAT
Statistics
Matches: 237, Mismatches: 34, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
71 38 0.16
72 15 0.06
73 184 0.78
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (73 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
GTGTCCTG
Found at i:100667978 original size:146 final size:146
Alignment explanation
Indices: 100667685--100668200 Score: 605
Period size: 146 Copynumber: 3.4 Consensus size: 146
100667675 TGAAAACCAG
* * * *
100667685 AAATTGAAAGTACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGCTAATTT
1 AAATTGAAATTACCTCAGCGTGT---CCTGAGGCTCAACTCAACTCTTGCAATATGAGCTGATTT
*
100667749 TTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
63 TTTATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
100667814 GTTGATTTTTGACAAACAA
128 GTTGATTTTTGACAAACAA
* *
100667833 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAACTCTAGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAACTCTTGCAATATGAGCTGATTTTTT
100667898 ATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
66 ATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
100667963 GATTTTTGACAAACAA
131 GATTTTTGACAAACAA
* * *
100667979 AAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTC-ACTTCTCGCAATATGAGTTGATTCTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAAC-TCTTGCAATATGAGCTGATT-TT
*
100668041 TT-TGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
64 TTATG-AACATAAATT---AAAAC------------CACCTCAGCGTGTCCTGAGGCTCAACTCA
* * ** *
100668105 TCTCTCGCAATATGAATTGA-AATT-AAAACACAA
113 CCTCTCGCAATATGAGTTGATTTTTGACAA-ACAA
* * * *
100668138 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAACTCTTGCAATATGAGCTGATTTT
100668201 GAAAAAGTAG
Statistics
Matches: 323, Mismatches: 22, Indels: 34
0.85 0.06 0.09
Matches are distributed among these distances:
143 2 0.01
144 37 0.11
145 16 0.05
146 133 0.41
148 27 0.08
158 3 0.01
159 24 0.07
160 48 0.15
161 32 0.10
162 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (146 bp):
AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAACTCTTGCAATATGAGCTGATTTTTT
ATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGACAAACAA
Found at i:100668169 original size:72 final size:73
Alignment explanation
Indices: 100668051--100668191 Score: 221
Period size: 72 Copynumber: 1.9 Consensus size: 73
100668041 TTTGAAACAT
* * * *
100668051 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
100668116 ATGAATTG
66 ATGAATTG
* *
100668124 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
100668188 ATGA
66 ATGA
100668192 GCTGATTTTG
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 57 0.92
73 5 0.08
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (73 bp):
AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAATTG
Found at i:100668219 original size:160 final size:157
Alignment explanation
Indices: 100667917--100668206 Score: 397
Period size: 160 Copynumber: 1.8 Consensus size: 157
100667907 AATTAAAACC
* ** *
100667917 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATAATTGAAAAACAAAAA
* ** * *
100667982 TTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTCTTTTTGAA
66 TTGAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTTGAA
*
100668047 ACATAAATTAAAAAAACGAAAATTGAAAAT
128 AAATAAATTAAAAAAACGAAAATTGAAAAT
*
100668077 ACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAATTGA-AATT-AAAACACAAAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATAATTGAAAA-ACAAAA
*
100668140 ATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAA
65 ATTGAAAATACCTCAGCGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAA
100668204 AAA
128 AAA
100668207 GTAGAAATTA
Statistics
Matches: 115, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
157 9 0.08
158 3 0.03
159 26 0.23
160 46 0.40
161 31 0.27
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (157 bp):
ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATAATTGAAAAACAAAAA
TTGAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAA
TAAATTAAAAAAACGAAAATTGAAAAT
Found at i:100668526 original size:77 final size:75
Alignment explanation
Indices: 100668345--100668631 Score: 325
Period size: 72 Copynumber: 3.8 Consensus size: 75
100668335 CAGTGTGTAA
* * * **
100668345 TCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAAAACAGAAATTGAAAATA
1 TCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTATGAAAACAGAAATTGAAAATA
*
100668410 CCTCAGCATGTG
66 CCTCA--ACGTG
* * *
100668422 AACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAA
1 -TCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTATGAAAACAGAAATTGAAAA
100668487 TACCTCAACGTG
64 TACCTCAACGTG
** * *
100668499 TCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---ATTT-TGAAAACAGAAATTGAAATT
1 TC-TGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTATGAAAACAGAAATTGAAAAT
*
100668560 ACCTCAGCGTG
65 ACCTCAACGTG
* *
100668571 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-T-ACGAACAGAAATTGAA
1 T-CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTATGA-AAACAGAAATTGAA
100668632 GAACAGAAAT
Statistics
Matches: 181, Mismatches: 21, Indels: 17
0.83 0.10 0.08
Matches are distributed among these distances:
72 61 0.34
73 4 0.02
74 1 0.01
75 17 0.09
76 1 0.01
77 35 0.19
78 32 0.18
79 30 0.17
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (75 bp):
TCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTATGAAAACAGAAATTGAAAATA
CCTCAACGTG
Found at i:100668637 original size:14 final size:14
Alignment explanation
Indices: 100668618--100668645 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100668608 TTTTTTTTAC
100668618 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100668632 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100668646 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:100668653 original size:89 final size:87
Alignment explanation
Indices: 100668539--100668721 Score: 253
Period size: 89 Copynumber: 2.1 Consensus size: 87
100668529 AAGTTGAATT
** *
100668539 TTGAAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATG
* * *
100668602 AGTTGATTTTTTTTACGAACAGAAA
65 AGTT-A-ATTTTTGACAAACAGAAA
100668627 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAA-AACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
100668692 GAGTTAATTTTTGACAAACAGAAA
64 GAGTTAATTTTTGACAAACAGAAA
100668716 TTGAAA
1 TTGAAA
100668722 TTACCTCAGC
Statistics
Matches: 85, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
88 6 0.07
89 42 0.49
90 1 0.01
91 34 0.40
92 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (87 bp):
TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTTTTGACAAACAGAAA
Found at i:100668758 original size:73 final size:73
Alignment explanation
Indices: 100668627--100668794 Score: 239
Period size: 73 Copynumber: 2.3 Consensus size: 73
100668617 CGAACAGAAA
* *
100668627 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
100668692 GAGTTAATTT
65 GAGTCAA-TT
* ** *
100668702 TTGACAAACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
*
100668766 AGTCGATT
66 AGTCAATT
100668774 TTGAAAAACAGAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
100668795 CCTGAAATTG
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
72 21 0.25
73 36 0.43
75 26 0.31
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTCAATT
Found at i:100668793 original size:14 final size:14
Alignment explanation
Indices: 100668774--100668807 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
100668764 TGAGTCGATT
100668774 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
* *
100668788 TTGAAAACCTGAAA
1 TTGAAAAACAGAAA
100668802 TTGAAA
1 TTGAAA
100668808 GTACCTCAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.15, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:100668920 original size:73 final size:71
Alignment explanation
Indices: 100668828--100669027 Score: 256
Period size: 73 Copynumber: 2.8 Consensus size: 71
100668818 GTGTGAGCCA
* *
100668828 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTTATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGC
100668893 GTGTCCTG
66 --GTCCTG
* ** * * **
100668901 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGC
*
100668966 GTCTTG
66 GTCCTG
* * *
100668972 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAA
1 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTATG-AACATAAATTAAAA
100669028 AAACGAAAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
71 40 0.37
72 12 0.11
73 56 0.52
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGC
GTCCTG
Found at i:100669137 original size:72 final size:72
Alignment explanation
Indices: 100669019--100669186 Score: 239
Period size: 72 Copynumber: 2.3 Consensus size: 72
100669009 TTTGAAACAT
* * *
100669019 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATT-AAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
*
100669084 ATGAGTTG
65 ATGAGCTG
* *
100669092 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATA
1 AAATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
100669157 TGAGCTG
66 TGAGCTG
** *
100669164 ATTTTGAAAAACAAAAATT-AAAA
1 AAATTAAAAAACAAAAATTGAAAA
100669187 GGCTTAACTC
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
71 4 0.05
72 76 0.89
73 5 0.06
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (72 bp):
AAATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGCTG
Found at i:100669281 original size:122 final size:124
Alignment explanation
Indices: 100669061--100669307 Score: 365
Period size: 122 Copynumber: 2.0 Consensus size: 124
100669051 GCGTGTCCTG
* *
100669061 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
100669126 TGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCACAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAA-AAAAATTAAA
* * * * *
100669186 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCGGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
100669248 TGCCCCGAGGCACAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAA
66 TGCCCCGAGGCACAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAAAAAATTAAA
100669307 A
1 A
100669308 ATACCTCAAC
Statistics
Matches: 111, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
121 11 0.10
122 65 0.59
123 7 0.06
124 1 0.01
125 27 0.24
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCACAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAAAAAATTAAA
Found at i:100669335 original size:71 final size:70
Alignment explanation
Indices: 100669186--100669361 Score: 203
Period size: 71 Copynumber: 2.5 Consensus size: 70
100669176 AAAAATTAAA
* * * * * * **
100669186 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
100669250 CCCCG
66 CCCCG
* *
100669255 AGGCACAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAAAAAAAACTAAAAATACCTCAACGT
* **
100669320 GTCTTG
65 GCCCCG
100669326 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
100669362 CCTTGGAAAG
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
69 25 0.28
70 6 0.07
71 59 0.66
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:100677424 original size:16 final size:15
Alignment explanation
Indices: 100677403--100677450 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
100677393 GATGTGAATA
100677403 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
100677419 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
100677434 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
100677450 A
1 A
100677451 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:100677426 original size:24 final size:24
Alignment explanation
Indices: 100677399--100677454 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
100677389 TAATGATGTG
*
100677399 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
100677423 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
100677447 AATAATAA
1 AATAATAA
100677455 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:100677433 original size:8 final size:8
Alignment explanation
Indices: 100677399--100677450 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
100677389 TAATGATGTG
*
100677399 AATAATAA
1 AATATTAA
100677407 AATATATAA
1 AATAT-TAA
100677416 AATA-TAA
1 AATATTAA
100677423 AATATTAA
1 AATATTAA
*
100677431 AATATCAA
1 AATATTAA
*
100677439 AATATTAG
1 AATATTAA
100677447 AATA
1 AATA
100677451 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:100677667 original size:22 final size:24
Alignment explanation
Indices: 100677604--100677668 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
100677594 CGTGATAATA
*
100677604 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
100677629 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
100677652 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
100677669 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:100677697 original size:34 final size:33
Alignment explanation
Indices: 100677657--100677722 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 33
100677647 TATAGTTAAG
*
100677657 ATATATACATAAGATAACATGTAAAAATATATAT
1 ATATATAAATAAGATAACAT-TAAAAATATATAT
* * *
100677691 ATATATAAATAATATAATATTAAAGATATATA
1 ATATATAAATAAGATAACATTAAAAATATATA
100677723 CATAAAATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 11 0.39
34 17 0.61
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.35
Consensus pattern (33 bp):
ATATATAAATAAGATAACATTAAAAATATATAT
Found at i:100677719 original size:25 final size:25
Alignment explanation
Indices: 100677691--100677747 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
100677681 AAATATATAT
* *
100677691 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAAAATAATATAAAAG
* * *
100677716 ATATATACATAAAATAGTATAAAAT
1 ATATATAAATAAAATAATATAAAAG
100677741 ATATATA
1 ATATATA
100677748 TACACGTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAAAATAATATAAAAG
Found at i:100677721 original size:16 final size:18
Alignment explanation
Indices: 100677678--100677722 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 18
100677668 AGATAACATG
100677678 TAAAAATATATATATATA
1 TAAAAATATATATATATA
*
100677696 TAAATA-ATATA-ATAT-
1 TAAAAATATATATATATA
*
100677711 TAAAGATATATA
1 TAAAAATATATA
100677723 CATAAAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 5 0.21
16 9 0.38
17 5 0.21
18 5 0.21
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
TAAAAATATATATATATA
Found at i:100677824 original size:23 final size:25
Alignment explanation
Indices: 100677781--100677826 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
100677771 TGTACCTAAT
100677781 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
100677806 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
100677827 ACAAAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:100678348 original size:30 final size:30
Alignment explanation
Indices: 100678312--100678484 Score: 265
Period size: 30 Copynumber: 5.8 Consensus size: 30
100678302 TAGGTACAAG
* * *
100678312 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAATGGAGT
* *
100678342 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAATGGAGT
*
100678372 TGGTGGTGGAAAAGGTGTGGCTAATGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAATGGAGT
* *
100678402 TGGTGGTGAAAAAAGAGTGGCTAATGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAATGGAGT
*
100678432 TGGTGGTGGAAAAGGTGTGGCTAATGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAATGGAGT
100678462 TGGTGGTGGAAAAGGAGTGGCTA
1 TGGTGGTGGAAAAGGAGTGGCTA
100678485 GTTGAGAAAA
Statistics
Matches: 130, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 130 1.00
ACGTcount: A:0.25, C:0.03, G:0.47, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAATGGAGT
Found at i:100678405 original size:60 final size:60
Alignment explanation
Indices: 100678312--100678486 Score: 305
Period size: 60 Copynumber: 2.9 Consensus size: 60
100678302 TAGGTACAAG
* *
100678312 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAATGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
100678372 TGGTGGTGGAAAAGGTGTGGCTAATGGAGTTGGTGGTGAAAAAAGAGTGGCTAATGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAATGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
100678432 TGGTGGTGGAAAAGGTGTGGCTAATGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAATGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
100678487 TGAGAAAAGT
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 108 1.00
ACGTcount: A:0.25, C:0.03, G:0.47, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAATGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:100678983 original size:21 final size:20
Alignment explanation
Indices: 100678959--100678997 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
100678949 AAGAAGTAAA
100678959 TAAACAAAACACATTTAATAC
1 TAAACAAAACA-ATTTAATAC
* *
100678980 TAAACCAATCAATTTAAT
1 TAAACAAAACAATTTAAT
100678998 GATATAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAACAAAACAATTTAATAC
Found at i:100680635 original size:22 final size:22
Alignment explanation
Indices: 100680595--100680650 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
100680585 AATAAAATTG
*
100680595 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
100680615 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
100680637 TATTAATAATTTAT
1 AAATAATAAATTAT
100680651 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:100682618 original size:27 final size:28
Alignment explanation
Indices: 100682587--100682646 Score: 104
Period size: 27 Copynumber: 2.2 Consensus size: 28
100682577 AAACAGAAGA
*
100682587 AATAAAATAGAGTAAGCATTTAATGC-T
1 AATAAAACAGAGTAAGCATTTAATGCTT
100682614 AATAAAACAGAGTAAGCATTTAATGCTT
1 AATAAAACAGAGTAAGCATTTAATGCTT
100682642 AATAA
1 AATAA
100682647 GTTCGTATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 25 0.81
28 6 0.19
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.28
Consensus pattern (28 bp):
AATAAAACAGAGTAAGCATTTAATGCTT
Found at i:100683148 original size:48 final size:48
Alignment explanation
Indices: 100683024--100683151 Score: 134
Period size: 48 Copynumber: 2.6 Consensus size: 48
100683014 CATATAACGG
** * *
100683024 GAAGCTCATGTGAGCCATGTAATGGGAAGCTTATCCGGGCTGCATAACAA
1 GAAGCTCATAAGAGCCAT-TAATGGGAAGCTTATACGCGC-GCATAACAA
* *
100683074 GAAGCTCATAAGAGCCATT-TTCGGGAAGCTTATACGCGC-CAATAACGA
1 GAAGCTCATAAGAGCCATTAAT-GGGAAGCTTATACGCGCGC-ATAACAA
* *
100683122 GTAGCTCTTAAGAGCCATTAATGGGAAGCT
1 GAAGCTCATAAGAGCCATTAATGGGAAGCT
100683152 CTGGAGAGTC
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
47 1 0.02
48 32 0.48
49 17 0.26
50 16 0.24
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (48 bp):
GAAGCTCATAAGAGCCATTAATGGGAAGCTTATACGCGCGCATAACAA
Found at i:100683210 original size:26 final size:26
Alignment explanation
Indices: 100683131--100683215 Score: 93
Period size: 26 Copynumber: 3.3 Consensus size: 26
100683121 AGTAGCTCTT
100683131 AAGAGCCATTAA-TGGGAAGCTC-TG
1 AAGAGCCATTAATTGGGAAGCTCATG
* * * * **
100683155 GAGAGTCATTAATTAGGAAGCTTACA
1 AAGAGCCATTAATTGGGAAGCTCATG
*
100683181 AAGAGCCTTTAATTGGGAAGCTCATG
1 AAGAGCCATTAATTGGGAAGCTCATG
100683207 AAGAGCCAT
1 AAGAGCCAT
100683216 ATATCGGGAC
Statistics
Matches: 45, Mismatches: 14, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
24 10 0.22
25 8 0.18
26 27 0.60
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (26 bp):
AAGAGCCATTAATTGGGAAGCTCATG
Found at i:100683315 original size:24 final size:25
Alignment explanation
Indices: 100683278--100683334 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
100683268 CAACTAATCA
* *
100683278 GGAAGCTCCGAAGAGCTAT-TAACG
1 GGAAGCTCCGAAGAACCATATAACG
*
100683302 GTAAGCTCAC-AAGAACCATATAACG
1 GGAAGCTC-CGAAGAACCATATAACG
100683327 GGAAGCTC
1 GGAAGCTC
100683335 GAAAGGGATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 14 0.52
25 13 0.48
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.16
Consensus pattern (25 bp):
GGAAGCTCCGAAGAACCATATAACG
Found at i:100683897 original size:20 final size:20
Alignment explanation
Indices: 100683857--100683897 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
100683847 ATCCCATGTA
*
100683857 TTTCATAAAATTTAGAATTT
1 TTTCATAAAATTTACAATTT
*
100683877 TTTCATAAATTTTAC-ATTT
1 TTTCATAAAATTTACAATTT
100683896 TT
1 TT
100683898 ACAATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTCATAAAATTTACAATTT
Found at i:100685001 original size:14 final size:14
Alignment explanation
Indices: 100684982--100685010 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
100684972 TTTACTCACT
100684982 TAACAATAAAAAAA
1 TAACAATAAAAAAA
100684996 TAACAATAAAAAAA
1 TAACAATAAAAAAA
100685010 T
1 T
100685011 GAAAAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (14 bp):
TAACAATAAAAAAA
Found at i:100685153 original size:13 final size:13
Alignment explanation
Indices: 100685137--100685161 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100685127 GGGAACTAAT
100685137 TTGGGGAAAAAAG
1 TTGGGGAAAAAAG
100685150 TTGGGGAAAAAA
1 TTGGGGAAAAAA
100685162 TAAAGGGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (13 bp):
TTGGGGAAAAAAG
Found at i:100685285 original size:76 final size:75
Alignment explanation
Indices: 100685099--100685299 Score: 223
Period size: 76 Copynumber: 2.7 Consensus size: 75
100685089 GTAGACGTTG
* ** *
100685099 GGGAAAAGAGTTAGGGATTTCGA-GGAGGGGGAACTAATTTGGGGAAAA-AAGTTGGGGAAAAAA
1 GGGAAAA-AGTTAGGGATTTCGAGGGAGGGGGAACTGATTTGGGGAAAATAAAATAGGGAAAAAA
100685162 TAAAGGGAATT
65 TAAAGGGAATT
100685173 GGGAAAAATGTTAGGGATTTCGAGGGAGGGGTGAACTGATTTGGGGAAAATAAAATAGGGAAAAA
1 GGGAAAAA-GTTAGGGATTTCGAGGGAGGGG-GAACTGATTTGGGGAAAATAAAATAGGGAAAAA
*
100685238 A-AGATAGGGATTTT
64 ATA-A-AGGGA-ATT
* * * *
100685252 GGGTGAAAA-TTAGGGGTTTTG-GGGAGGGGGAACTGATTTGGGGGAAAT
1 GGG-AAAAAGTTAGGGATTTCGAGGGAGGGGGAACTGATTTGGGGAAAAT
100685300 GAATTGAGGA
Statistics
Matches: 110, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
73 1 0.01
74 21 0.19
75 7 0.06
76 36 0.33
77 21 0.19
78 15 0.14
79 5 0.05
80 4 0.04
ACGTcount: A:0.36, C:0.02, G:0.39, T:0.22
Consensus pattern (75 bp):
GGGAAAAAGTTAGGGATTTCGAGGGAGGGGGAACTGATTTGGGGAAAATAAAATAGGGAAAAAAT
AAAGGGAATT
Found at i:100688489 original size:21 final size:21
Alignment explanation
Indices: 100688463--100688503 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
100688453 AGACGAGCAA
* *
100688463 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
100688484 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
100688504 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:100697036 original size:9 final size:9
Alignment explanation
Indices: 100697024--100697113 Score: 71
Period size: 9 Copynumber: 9.9 Consensus size: 9
100697014 GTACATTTTG
100697024 TTATTATTA
1 TTATTATTA
* *
100697033 TTATTCTCA
1 TTATTATTA
*
100697042 TTATTGTTA
1 TTATTATTA
*
100697051 TTATTGTTA
1 TTATTATTA
100697060 TTATTATTA
1 TTATTATTA
100697069 TT-TTATTTA
1 TTATTA-TTA
100697078 TTTATT-TTA
1 -TTATTATTA
100697087 TTTATT-TTAA
1 -TTATTATT-A
100697097 TT-TTATATA
1 TTATTAT-TA
100697106 TTATTATT
1 TTATTATT
100697114 CAATTAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
8 5 0.07
9 54 0.78
10 8 0.12
11 2 0.03
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (9 bp):
TTATTATTA
Found at i:100697068 original size:15 final size:14
Alignment explanation
Indices: 100697027--100697113 Score: 72
Period size: 15 Copynumber: 6.0 Consensus size: 14
100697017 CATTTTGTTA
* *
100697027 TTATTATTATTCTCA
1 TTATTATTATTAT-T
*
100697042 TTATTGTTATTATT
1 TTATTATTATTATT
100697056 GTTATTATTATTATT
1 -TTATTATTATTATT
100697071 TTA-T-TTATTTATT
1 TTATTATTA-TTATT
100697084 TTATTTATT-TTAATT
1 TTA-TTATTATT-ATT
100697099 TTATATATTATTATT
1 TTAT-TATTATTATT
100697114 CAATTAGTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
12 3 0.05
13 9 0.15
14 6 0.10
15 38 0.63
16 4 0.07
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (14 bp):
TTATTATTATTATT
Found at i:100697084 original size:13 final size:13
Alignment explanation
Indices: 100697066--100697107 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
100697056 GTTATTATTA
100697066 TTATTTTATTTAT
1 TTATTTTATTTAT
100697079 TTATTTTATTTATT
1 TTATTTTATTTA-T
*
100697093 TTAATTTTATATAT
1 TT-ATTTTATTTAT
100697107 T
1 T
100697108 ATTATTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 12 0.46
14 5 0.19
15 9 0.35
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TTATTTTATTTAT
Found at i:100697091 original size:22 final size:25
Alignment explanation
Indices: 100697057--100697113 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 25
100697047 GTTATTATTG
100697057 TTATTATTA-TTATTTT-A-TTTAT
1 TTATTATTATTTATTTTAATTTTAT
100697079 TTATT-TTATTTATTTTAATTTTAT
1 TTATTATTATTTATTTTAATTTTAT
*
100697103 ATATTATTATT
1 TTATTATTATT
100697114 CAATTAGTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 3 0.10
22 12 0.40
23 1 0.03
24 9 0.30
25 5 0.17
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (25 bp):
TTATTATTATTTATTTTAATTTTAT
Found at i:100697091 original size:28 final size:28
Alignment explanation
Indices: 100697051--100697107 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
100697041 ATTATTGTTA
*
100697051 TTATTGTTATTATTATT-ATTTTATTTAT
1 TTATTGTTATTATT-TTAATTTTATATAT
100697079 TTATT-TTATTTATTTTAATTTTATATAT
1 TTATTGTTA-TTATTTTAATTTTATATAT
100697107 T
1 T
100697108 ATTATTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (28 bp):
TTATTGTTATTATTTTAATTTTATATAT
Found at i:100698687 original size:17 final size:17
Alignment explanation
Indices: 100698665--100698699 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
100698655 GGGTTTCTTG
100698665 ATAAAGTGGAAGACAAC
1 ATAAAGTGGAAGACAAC
100698682 ATAAAGTGGAAGACAAC
1 ATAAAGTGGAAGACAAC
100698699 A
1 A
100698700 CGTCCGCACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.23, T:0.11
Consensus pattern (17 bp):
ATAAAGTGGAAGACAAC
Found at i:100701811 original size:20 final size:20
Alignment explanation
Indices: 100701786--100701829 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
100701776 GTTACACGGC
100701786 CTACTCCCATGGCCGTGCCT
1 CTACTCCCATGGCCGTGCCT
100701806 CTACTCCCATGGCCGTGCCT
1 CTACTCCCATGGCCGTGCCT
100701826 CTAC
1 CTAC
100701830 GCCACACGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.11, C:0.45, G:0.18, T:0.25
Consensus pattern (20 bp):
CTACTCCCATGGCCGTGCCT
Found at i:100703642 original size:14 final size:16
Alignment explanation
Indices: 100703613--100703650 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
100703603 TCTTTATTAG
100703613 TTCTATTATGTAAAAT
1 TTCTATTATGTAAAAT
100703629 TTCTATT-T-TAAAAT
1 TTCTATTATGTAAAAT
100703643 TTCT-TTAT
1 TTCTATTAT
100703651 ACGTGTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 1 0.05
16 7 0.33
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (16 bp):
TTCTATTATGTAAAAT
Found at i:100704524 original size:12 final size:12
Alignment explanation
Indices: 100704507--100704537 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
100704497 TGTCCTTTTA
100704507 TGATTTCGCGCG
1 TGATTTCGCGCG
100704519 TGATTTCGCGCG
1 TGATTTCGCGCG
*
100704531 TGTTTTC
1 TGATTTC
100704538 TTAAAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.23, G:0.29, T:0.42
Consensus pattern (12 bp):
TGATTTCGCGCG
Found at i:100708920 original size:21 final size:20
Alignment explanation
Indices: 100708883--100708922 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
100708873 ACAAAAGTAC
*
100708883 AGAAAATAAAAATAATAAAA
1 AGAAAATAAAAACAATAAAA
*
100708903 AGAAGAATAAAAGCAATAAA
1 AGAA-AATAAAAACAATAAA
100708923 GCGAAGGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.75, C:0.03, G:0.10, T:0.12
Consensus pattern (20 bp):
AGAAAATAAAAACAATAAAA
Found at i:100710961 original size:5 final size:5
Alignment explanation
Indices: 100710936--100710977 Score: 59
Period size: 5 Copynumber: 8.2 Consensus size: 5
100710926 TTGGTATAAT
100710936 TATTA -ATTAA TATTAA TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATT-A TATT-A TATTA TATTA TATTA TATTA TATTA T
100710978 GAAATAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 3 0.09
5 23 0.66
6 9 0.26
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:100711288 original size:20 final size:20
Alignment explanation
Indices: 100711247--100711294 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
100711237 TTATATATAT
100711247 AAAGTAAAAAAAAGAAAAAGA
1 AAAG-AAAAAAAAGAAAAAGA
* *
100711268 AATGAAAAAAAA-AAGATAGA
1 AAAGAAAAAAAAGAA-AAAGA
100711288 AAAGAAA
1 AAAGAAA
100711295 CAGAATGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (20 bp):
AAAGAAAAAAAAGAAAAAGA
Found at i:100711304 original size:15 final size:15
Alignment explanation
Indices: 100711256--100711309 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
100711246 TAAAGTAAAA
100711256 AAAAGAAAAAGAAATG
1 AAAAGAAAAAG-AATG
*
100711272 AAAAAAAAAAG-ATAG
1 AAAAGAAAAAGAAT-G
*
100711287 AAAAGAAACAGAATG
1 AAAAGAAAAAGAATG
*
100711302 AAACGAAA
1 AAAAGAAA
100711310 CAGAGGGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
14 2 0.06
15 18 0.56
16 12 0.38
ACGTcount: A:0.74, C:0.04, G:0.17, T:0.06
Consensus pattern (15 bp):
AAAAGAAAAAGAATG
Found at i:100712731 original size:20 final size:20
Alignment explanation
Indices: 100712708--100712756 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
100712698 GATTATATTG
*
100712708 AATTGAAAAAAAAATTAATT
1 AATTGAAAAAAAAATGAATT
* *
100712728 AATT-AATTAAAATATGAATT
1 AATTGAA-AAAAAAATGAATT
100712748 AATTGAAAA
1 AATTGAAAA
100712757 CTGAAAAGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
19 2 0.09
20 19 0.83
21 2 0.09
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (20 bp):
AATTGAAAAAAAAATGAATT
Found at i:100712899 original size:12 final size:12
Alignment explanation
Indices: 100712882--100712906 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
100712872 GCCGACTACT
100712882 GTTACTGTTACC
1 GTTACTGTTACC
100712894 GTTACTGTTACC
1 GTTACTGTTACC
100712906 G
1 G
100712907 ATTCGGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:100713006 original size:47 final size:47
Alignment explanation
Indices: 100712937--100713053 Score: 166
Period size: 47 Copynumber: 2.5 Consensus size: 47
100712927 GATATTGTTA
* *
100712937 CTGT-TACCGTTACTGTTACTGTTTCAGATTTGTTC-GAATGAGGTACT
1 CTGTGTACCG-TATTGTTACTGTTCCAGATTTGTTCTG-ATGAGGTACT
*
100712984 CTGTGTACCGTATTGTTACTGTTCCGGATTTGTTCTGATGAGGTACT
1 CTGTGTACCGTATTGTTACTGTTCCAGATTTGTTCTGATGAGGTACT
*
100713031 CTGTGTACCGTATTGCTACTGTT
1 CTGTGTACCGTATTGTTACTGTT
100713054 ACTGTTACTA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
47 58 0.91
48 6 0.09
ACGTcount: A:0.16, C:0.18, G:0.23, T:0.43
Consensus pattern (47 bp):
CTGTGTACCGTATTGTTACTGTTCCAGATTTGTTCTGATGAGGTACT
Found at i:100713246 original size:18 final size:18
Alignment explanation
Indices: 100713181--100713266 Score: 91
Period size: 18 Copynumber: 4.7 Consensus size: 18
100713171 AAAGATCGAC
* *
100713181 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAA-CTGAT
*
100713200 TGTTACTCAATAACTGAT
1 TGTTACTGAATAACTGAT
* * *
100713218 TATTATTGAATAATTGAT
1 TGTTACTGAATAACTGAT
* *
100713236 TGTTACCGAATAACTGAC
1 TGTTACTGAATAACTGAT
100713254 TGTTACTGAATAA
1 TGTTACTGAATAA
100713267 ATAATCGTTC
Statistics
Matches: 54, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
18 42 0.78
19 12 0.22
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (18 bp):
TGTTACTGAATAACTGAT
Found at i:100713248 original size:36 final size:37
Alignment explanation
Indices: 100713178--100713266 Score: 110
Period size: 36 Copynumber: 2.4 Consensus size: 37
100713168 TGGAAAGATC
*
100713178 GACTGTTACTGAATAATTTAATTGTTACTCAATAACT
1 GACTATTACTGAATAATTTAATTGTTACTCAATAACT
* * *
100713215 GATTATTATTGAATAA-TTGATTGTTAC-CGAATAACT
1 GACTATTACTGAATAATTTAATTGTTACTC-AATAACT
*
100713251 GACTGTTACTGAATAA
1 GACTATTACTGAATAA
100713267 ATAATCGTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
35 1 0.02
36 30 0.68
37 13 0.30
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.39
Consensus pattern (37 bp):
GACTATTACTGAATAATTTAATTGTTACTCAATAACT
Found at i:100715227 original size:27 final size:27
Alignment explanation
Indices: 100715197--100715323 Score: 184
Period size: 27 Copynumber: 4.7 Consensus size: 27
100715187 TCCCAAATAT
* * *
100715197 CCTCGATTTATAGAATTATCGTTTTGC
1 CCTCGATTTACAGAATTACCGTTTTAC
*
100715224 CCTCGATTTACAAAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
* *
100715251 CCTTGATTTACAGAA-TACCATTTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
*
100715277 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
100715304 CCTCGATTTACAGAATTACC
1 CCTCGATTTACAGAATTACC
100715324 AAAATACCCT
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 23 0.26
27 65 0.74
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.39
Consensus pattern (27 bp):
CCTCGATTTACAGAATTACCGTTTTAC
Found at i:100715286 original size:53 final size:54
Alignment explanation
Indices: 100715197--100715324 Score: 186
Period size: 53 Copynumber: 2.4 Consensus size: 54
100715187 TCCCAAATAT
* * * *
100715197 CCTCGATTTATAGAATTATCGTTTTGCCCTCGATTTACAAAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTAC
* * *
100715251 CCTTGATTTACAGAA-TACCATTTTACCCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTAC
100715304 CCTCGATTTACAGAATTACCA
1 CCTCGATTTACAGAATTACCA
100715325 AAATACCCTC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
53 47 0.72
54 18 0.28
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.38
Consensus pattern (54 bp):
CCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTAC
Found at i:100715370 original size:27 final size:27
Alignment explanation
Indices: 100715340--100715439 Score: 148
Period size: 27 Copynumber: 3.7 Consensus size: 27
100715330 CCCTCGATCA
* *
100715340 GTAAATTTACAAAAATACCCCTGGTTT
1 GTAAAATTACTAAAATACCCCTGGTTT
*
100715367 GTAAAATTACTAAAATACCCCTAGTTT
1 GTAAAATTACTAAAATACCCCTGGTTT
* *
100715394 GTAAAATTACCAAAATACCCCTGATTT
1 GTAAAATTACTAAAATACCCCTGGTTT
100715421 GTAAAA-TACTAAAATACCC
1 GTAAAATTACTAAAATACCC
100715440 TTGTAGGGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
26 12 0.18
27 54 0.82
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
GTAAAATTACTAAAATACCCCTGGTTT
Found at i:100715375 original size:54 final size:55
Alignment explanation
Indices: 100715317--100715440 Score: 164
Period size: 54 Copynumber: 2.3 Consensus size: 55
100715307 CGATTTACAG
* * *
100715317 AATTACCAAAATACCCTCGA-TCAGTAAATTTACAAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCGAGTCAGTAAAATTACAAAAATACCCCTGATTTGTAA
* ** *
100715371 AATTACTAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAA
1 AATTACTAAAATACCCTCGAGTCAGTAAAATTACAAAAATACCCCTGATTTGTAA
100715425 AA-TACTAAAATACCCT
1 AATTACTAAAATACCCT
100715441 TGTAGGGTAG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
53 15 0.25
54 46 0.75
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (55 bp):
AATTACTAAAATACCCTCGAGTCAGTAAAATTACAAAAATACCCCTGATTTGTAA
Found at i:100715463 original size:27 final size:27
Alignment explanation
Indices: 100715427--100715655 Score: 282
Period size: 27 Copynumber: 8.5 Consensus size: 27
100715417 ATTTGTAAAA
*
100715427 TACTAAAATACCCTTGTAGGGTAGAAT
1 TACTGAAATACCCTTGTAGGGTAGAAT
* *
100715454 TACTGAAATACCCTTGTAAGGTAGAAA
1 TACTGAAATACCCTTGTAGGGTAGAAT
*
100715481 TACCGAAATACTCC-TGTAGGGTAGAAT
1 TACTGAAATAC-CCTTGTAGGGTAGAAT
* *
100715508 TACTGAAATACCCCTGTAAGGTAGAAT
1 TACTGAAATACCCTTGTAGGGTAGAAT
*
100715535 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCTTGTAGGGTAGAAT
* * *
100715562 TACTGAAATACCCCTATATGGTAGAAT
1 TACTGAAATACCCTTGTAGGGTAGAAT
*
100715589 TA-TCGAAATACCCTTGTAGGGTAGAAA
1 TACT-GAAATACCCTTGTAGGGTAGAAT
** *
100715616 TACCAAAATACCCTTGTACGGTAGAAT
1 TACTGAAATACCCTTGTAGGGTAGAAT
* *
100715643 TACCGAGATACCC
1 TACTGAAATACCC
100715656 ATGTGGGGGA
Statistics
Matches: 177, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.02
27 172 0.97
28 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
TACTGAAATACCCTTGTAGGGTAGAAT
Found at i:100715499 original size:54 final size:54
Alignment explanation
Indices: 100715432--100715655 Score: 315
Period size: 54 Copynumber: 4.1 Consensus size: 54
100715422 TAAAATACTA
* *
100715432 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCTTGTAAGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCG
*
100715486 AAATACTCC-TGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACTG
1 AAATAC-CCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCG
* * * *
100715540 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATATGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCG
* ** * *
100715594 AAATACCCTTGTAGGGTAGAAATACCAAAATACCCTTGTACGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCG
*
100715648 AGATACCC
1 AAATACCC
100715656 ATGTGGGGGA
Statistics
Matches: 152, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
53 2 0.01
54 148 0.97
55 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCG
Found at i:100715913 original size:25 final size:25
Alignment explanation
Indices: 100715878--100715972 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
100715868 AGGAAGTGCT
100715878 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
100715903 AAAAGGACTTTACCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
100715928 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
100715953 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
100715973 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Done.