Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 314 of 333
Found at i:102763095 original size:19 final size:20
Alignment explanation
Indices: 102763043--102763097 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 20
102763033 AGCTCGGCTC
102763043 AATAA-TTAAGCTT-AAAGTT
1 AATAACTTAA-CTTAAAAGTT
*
102763062 AATAACATATA-TTAAAAG-T
1 AATAACTTA-ACTTAAAAGTT
102763081 AATAACTTAACTTAAAA
1 AATAACTTAACTTAAAA
102763098 TATGTATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
18 1 0.03
19 22 0.73
20 6 0.20
21 1 0.03
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (20 bp):
AATAACTTAACTTAAAAGTT
Found at i:102795669 original size:12 final size:12
Alignment explanation
Indices: 102795652--102795676 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102795642 CTCATGCATA
102795652 TGTGTGTTTGTG
1 TGTGTGTTTGTG
102795664 TGTGTGTTTGTG
1 TGTGTGTTTGTG
102795676 T
1 T
102795677 AATATATCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.40, T:0.60
Consensus pattern (12 bp):
TGTGTGTTTGTG
Found at i:102796583 original size:22 final size:22
Alignment explanation
Indices: 102796558--102796606 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
102796548 TGATGTTGAG
102796558 GTATGGCAAAAATGAATTGTTT
1 GTATGGCAAAAATGAATTGTTT
102796580 GTATGGCAAAAATGAATTGTTT
1 GTATGGCAAAAATGAATTGTTT
102796602 GTATG
1 GTATG
102796607 TTTGTTCTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (22 bp):
GTATGGCAAAAATGAATTGTTT
Found at i:102800972 original size:16 final size:17
Alignment explanation
Indices: 102800935--102800972 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
102800925 GCTCGTAAAA
*
102800935 ATTTTAAAAAATATAAT
1 ATTTTAAAAAATACAAT
102800952 A-TTTAAAAAA-ACAAT
1 ATTTTAAAAAATACAAT
102800967 ATTTTA
1 ATTTTA
102800973 GTTGATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 5 0.26
16 13 0.68
17 1 0.05
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
ATTTTAAAAAATACAAT
Found at i:102802596 original size:6 final size:6
Alignment explanation
Indices: 102802585--102802610 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
102802575 TATTCTGGCC
102802585 TGTCAT TGTCAT TGTCAT TGTCAT TG
1 TGTCAT TGTCAT TGTCAT TGTCAT TG
102802611 CGATATAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.19, T:0.50
Consensus pattern (6 bp):
TGTCAT
Found at i:102806579 original size:22 final size:22
Alignment explanation
Indices: 102806515--102806581 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
102806505 AAAAATTTCA
102806515 TTAAATAAAAAATTATTAAATA-T
1 TTAAA-AAAAAATTA-TAAATATT
* *
102806538 TAAAAAAATAAAATATAAATATTT
1 TTAAAAAA-AAATTATAAATA-TT
102806562 TTAAAAAAAAATTA-AAATAT
1 TTAAAAAAAAATTATAAATAT
102806582 ATAGGTGGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 1 0.03
22 14 0.38
23 14 0.38
24 8 0.22
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
TTAAAAAAAAATTATAAATATT
Found at i:102816879 original size:13 final size:13
Alignment explanation
Indices: 102816861--102816888 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
102816851 CTTCTCTTAA
102816861 AACCATCATATAG
1 AACCATCATATAG
102816874 AACCATCATATAG
1 AACCATCATATAG
102816887 AA
1 AA
102816889 ACCTGTAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.21, G:0.07, T:0.21
Consensus pattern (13 bp):
AACCATCATATAG
Found at i:102824093 original size:3 final size:3
Alignment explanation
Indices: 102824085--102824286 Score: 121
Period size: 3 Copynumber: 67.7 Consensus size: 3
102824075 GGGGAGAGTG
102824085 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA CTT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * * * * *
102824129 TTA CTA TTA TT- CTA TTTA ATA TTA CTG TT- TTC TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
102824172 TTA TTA TTA GTA GTAA CGTA ATA GTG TTT TTA TTA TT- TTA TTA TTA
1 TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
102824218 TT- TTT TTA CCTTT TTA TTA CTA TTA TTA TTA TTA CTA TTA TTA TTA
1 TTA TTA TTA --TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
102824264 TTA TTA TAA ATA TTA TAA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
102824287 TTTTTTAAAA
Statistics
Matches: 153, Mismatches: 34, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
2 13 0.08
3 132 0.86
4 6 0.04
5 2 0.01
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:102826226 original size:16 final size:16
Alignment explanation
Indices: 102826205--102826235 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102826195 TATTATATTT
102826205 TTTATTAGATTTTTTG
1 TTTATTAGATTTTTTG
*
102826221 TTTATTGGATTTTTT
1 TTTATTAGATTTTTT
102826236 TTTTGTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.13, T:0.71
Consensus pattern (16 bp):
TTTATTAGATTTTTTG
Found at i:102828664 original size:13 final size:13
Alignment explanation
Indices: 102828646--102828670 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102828636 TATTTTAATA
102828646 TTATTTTGTGTGT
1 TTATTTTGTGTGT
102828659 TTATTTTGTGTG
1 TTATTTTGTGTG
102828671 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:102830238 original size:41 final size:41
Alignment explanation
Indices: 102830193--102830421 Score: 297
Period size: 41 Copynumber: 5.6 Consensus size: 41
102830183 CGGACGTTAC
102830193 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTTTAA
102830234 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
* *
102830275 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
* *
102830316 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
* *
102830357 GTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAATCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTGATACAT--TTCAGACTTTAA
* **
102830398 GCCTAGCAGGCAAAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGA
102830422 ATCTGTTTAA
Statistics
Matches: 173, Mismatches: 8, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
39 3 0.02
40 8 0.05
41 160 0.92
42 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (41 bp):
GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
Found at i:102836298 original size:15 final size:15
Alignment explanation
Indices: 102836274--102836333 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
102836264 AAAACTTAAA
*
102836274 TTCAACACTTAATTT
1 TTCAATACTTAATTT
*
102836289 TTCAGTACTT-ATTT
1 TTCAATACTTAATTT
* *
102836303 TT-AATACTCATTTT
1 TTCAATACTTAATTT
**
102836317 TTCACCACTTAATTT
1 TTCAATACTTAATTT
102836332 TT
1 TT
102836334 TTAATCTAAC
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
13 5 0.15
14 11 0.32
15 18 0.53
ACGTcount: A:0.27, C:0.18, G:0.02, T:0.53
Consensus pattern (15 bp):
TTCAATACTTAATTT
Found at i:102836448 original size:3 final size:3
Alignment explanation
Indices: 102836440--102836471 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
102836430 AGTGAGTAGT
*
102836440 TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
102836472 TATAAATGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:102836734 original size:18 final size:19
Alignment explanation
Indices: 102836711--102836748 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
102836701 ACCCTTAAAA
*
102836711 TTGAATTATT-AAATTTTT
1 TTGAATGATTAAAATTTTT
*
102836729 TTGAATGCTTAAAATTTTT
1 TTGAATGATTAAAATTTTT
102836748 T
1 T
102836749 AAATATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (19 bp):
TTGAATGATTAAAATTTTT
Found at i:102843403 original size:25 final size:25
Alignment explanation
Indices: 102843356--102843404 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
102843346 TTGAAATATT
* * *
102843356 TTAATTCGATTAATATTTTAAAAAA
1 TTAATTCGATTAACAATTAAAAAAA
102843381 TTAATTCGATTAACAATTAAAAAA
1 TTAATTCGATTAACAATTAAAAAA
102843405 TAAAAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (25 bp):
TTAATTCGATTAACAATTAAAAAAA
Found at i:102846174 original size:21 final size:21
Alignment explanation
Indices: 102846148--102846187 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
102846138 AATACAAAAC
*
102846148 AAAATATACACGTAATATATT
1 AAAATATACACATAATATATT
*
102846169 AAAATATATACATAATATA
1 AAAATATACACATAATATA
102846188 CATAATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (21 bp):
AAAATATACACATAATATATT
Found at i:102847227 original size:33 final size:32
Alignment explanation
Indices: 102847181--102847247 Score: 125
Period size: 33 Copynumber: 2.1 Consensus size: 32
102847171 GGCTATTAGA
102847181 TTTTGACTCTCTATTTGGACTGTTTTCTGCCT
1 TTTTGACTCTCTATTTGGACTGTTTTCTGCCT
102847213 TTTTAGACTCTCTATTTGGACTGTTTTCTGCCT
1 TTTT-GACTCTCTATTTGGACTGTTTTCTGCCT
102847246 TT
1 TT
102847248 GATATTGCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 4 0.12
33 30 0.88
ACGTcount: A:0.10, C:0.21, G:0.15, T:0.54
Consensus pattern (32 bp):
TTTTGACTCTCTATTTGGACTGTTTTCTGCCT
Found at i:102848119 original size:24 final size:25
Alignment explanation
Indices: 102848074--102848125 Score: 97
Period size: 24 Copynumber: 2.1 Consensus size: 25
102848064 GTCAAGGGCG
102848074 AATTTAGAGGAGTTTGGCAAAGTTC
1 AATTTAGAGGAGTTTGGCAAAGTTC
102848099 AATTTAGAGGAG-TTGGCAAAGTTC
1 AATTTAGAGGAGTTTGGCAAAGTTC
102848123 AAT
1 AAT
102848126 CTCCATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 15 0.56
25 12 0.44
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (25 bp):
AATTTAGAGGAGTTTGGCAAAGTTC
Found at i:102855608 original size:10 final size:10
Alignment explanation
Indices: 102855593--102855618 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
102855583 AAGTAAATGA
102855593 TATTTATTAT
1 TATTTATTAT
102855603 TATTTATTAT
1 TATTTATTAT
102855613 TATTTA
1 TATTTA
102855619 AATAGATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TATTTATTAT
Found at i:102863363 original size:60 final size:60
Alignment explanation
Indices: 102863243--102863367 Score: 139
Period size: 60 Copynumber: 2.1 Consensus size: 60
102863233 CAGTGTTAAC
* * *
102863243 TGGGCCTTAGCCCGTATCAATATTAATCTGGGCCATGGCCCTTTACAGTATCAGAGTATAT
1 TGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTTTACAG-ATCAGAGTATAT
* * *
102863304 TGGGCC-TAGCCCATATCAGTATCAATCTGGGCCGTAGCCTTATTACA-AGTC-GAGATATAT
1 TGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCT-TTACAGA-TCAGAG-TATAT
102863364 TGGG
1 TGGG
102863368 TGATACGAGT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
59 4 0.07
60 40 0.73
61 11 0.20
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (60 bp):
TGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTTTACAGATCAGAGTATAT
Found at i:102863514 original size:4 final size:4
Alignment explanation
Indices: 102863505--102863538 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
102863495 AAGTTTTATT
102863505 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
102863539 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:102863546 original size:22 final size:22
Alignment explanation
Indices: 102863488--102863547 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
102863478 AAGTGGCCCA
*
102863488 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
102863512 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
102863533 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
102863548 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:102865900 original size:18 final size:18
Alignment explanation
Indices: 102865879--102865917 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
102865869 GATTGAGAGT
* *
102865879 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
102865897 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
102865915 GAA
1 GAA
102865918 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:102867326 original size:4 final size:4
Alignment explanation
Indices: 102867317--102867350 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
102867307 AAGTTTTATT
102867317 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
102867351 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:102867358 original size:22 final size:22
Alignment explanation
Indices: 102867300--102867359 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
102867290 AAGTGGCCCA
*
102867300 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
102867324 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
102867345 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
102867360 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:102871241 original size:3 final size:3
Alignment explanation
Indices: 102871228--102871260 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
102871218 ATGAATAGAA
*
102871228 AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
102871261 TGAATGAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:102874932 original size:550 final size:550
Alignment explanation
Indices: 102873892--102876092 Score: 4100
Period size: 550 Copynumber: 4.0 Consensus size: 550
102873882 ATCAAATTTG
* * *
102873892 CAAGCTGACCTATTTGAGTTTCGAGCCCTTGAATTGATGCTTGCTGAA-TTTTAAGTACTGTTTC
1 CAAGCTGACCTATTTGAGTTTCGAGCCCTTGAATCGATGCTTGCT-AATTTTTAAGTGCTATTTC
* *
102873956 GGTATTCTGAAAACGAGTTGT-TAACACCGAGATAAATTTTGTAAGCATCTCTTCAAGGTTCGGC
65 GGTATTCTAAAAATGAGTT-TCTAACACCGAGATAAATTTTGTAAGCATCTCTTCAAGGTTCGGC
* * *
102874020 TTTTTCTCCTGTTGGTAAGGTGGTTAATGAAAACCTAGAGGGTGTTGTGGTATTTGATTCCTTTG
129 TTTTTCTCCTGTTGGTAAGGTGGTTAATGAAAACCTAGAAGGTGTTGTGGTCTTTGATTCCTTGG
*
102874085 ACCACCCCACGAAAAATTGGGATGGTTCCTCCAACCTGCATTGTAAGTGTTACTATAAGGGTTAT
194 ACCACCCCACGAAAAATTGGGATGGTTCCTCCAACCTGCATTGTAAATGTTACTATAAGGGTTAT
*
102874150 TCTAAGGTCTGGAATTGTTACCCATATAGTGGACTTGTTCTCCCTCGTTGCTGGGGTTGAAGGAT
259 TCTAAGGTCTAGAATTGTTACCCATATAGTGGACTTGTTCTCCCTCGTTGCTGGGGTTGAAGGAT
*
102874215 GGATAATCTGTGTTTTGCATTCCTCCTCTATTTGAATCACACCTCATCACTGGATGTACTTGAAT
324 GGATAATCTGTGTTTTGCATTCCTCCTCCATTTGAATCACACCTCATCACTGGATGTACTTGAAT
* *
102874280 AGAATCATACAAACCATCAATAGTTTTATTCAATACTTCCACCTGGTTAGATAGCATAGTGACCG
389 AGAATCATACAAACCATCAATATTTTTATTCAATACTTCCACCTAGTTAGATAGCATAGTGACCG
102874345 CGTCGAGGTTGAAAACACCAGTTGCTTTTGTTGGCTTTGTTCTCATTACTTGCCACTGATAGTTG
454 CGTCGAGGTTGAAAACACCAGTTGCTTTTGTTGGCTTTGTTCTCATTACTTGCCACTGATAGTTG
102874410 TTTAGTGACCTCTCTTCAATAAATTCGTAAGC
519 TTTAGTGACCTCTCTTCAATAAATTCGTAAGC
*
102874442 CAAGCTGACCTATTTGAGTTTCGAGCCCTTGAATCGATGCTTGCTAATTTTTAAGTGCTGTTTCG
1 CAAGCTGACCTATTTGAGTTTCGAGCCCTTGAATCGATGCTTGCTAATTTTTAAGTGCTATTTCG
102874507 GTATTCTAAAAATGAGTTTCTAACACCGAGATAAATTTTGTAAGCATCTCTTCAAGGTTCGGCTT
66 GTATTCTAAAAATGAGTTTCTAACACCGAGATAAATTTTGTAAGCATCTCTTCAAGGTTCGGCTT
102874572 TTTCTCCTGTTGGTAAGGTGGTTAATGAAAACCTAGAAGGTGTTGTGGTCTTTGATTCCTTGGAC
131 TTTCTCCTGTTGGTAAGGTGGTTAATGAAAACCTAGAAGGTGTTGTGGTCTTTGATTCCTTGGAC
102874637 CACCCCACGAAAAATTGGGATGGTTCCTCCAACCTGCATTGTAAATGTTACTATAAGGGTTATTC
196 CACCCCACGAAAAATTGGGATGGTTCCTCCAACCTGCATTGTAAATGTTACTATAAGGGTTATTC
*
102874702 TAAGGTCTAGAATTGTTACCCATATAGTGGACTTGTTCTCTCTCGTTGCTGGGGTTGAAGGATGG
261 TAAGGTCTAGAATTGTTACCCATATAGTGGACTTGTTCTCCCTCGTTGCTGGGGTTGAAGGATGG
102874767 ATAATCTGTGTTTTGCATTCCTCCTCCATTTGAATCACACCTCATCACTGGATGTACTTGAATAG
326 ATAATCTGTGTTTTGCATTCCTCCTCCATTTGAATCACACCTCATCACTGGATGTACTTGAATAG
*
102874832 AATCATACAAACCATCAATATTTTTATTCAATACTTCCACCTGGTTAGATAGCATAGTGACCGCG
391 AATCATACAAACCATCAATATTTTTATTCAATACTTCCACCTAGTTAGATAGCATAGTGACCGCG
102874897 TCGAGGTTGAAAACACCAGTTGCTTTTGTTGGCTTTGTTCTCATTACTTGCCACTGATAGTTGTT
456 TCGAGGTTGAAAACACCAGTTGCTTTTGTTGGCTTTGTTCTCATTACTTGCCACTGATAGTTGTT
102874962 TAGTGACCTCTCTTCAATAAATTCGTAAGC
521 TAGTGACCTCTCTTCAATAAATTCGTAAGC
* *
102874992 CAAGCTGACCTATTTGAGTTTCGAGCCCTTGAATCGATGCTTGCTGATTTTTAAGTCCTATTTCG
1 CAAGCTGACCTATTTGAGTTTCGAGCCCTTGAATCGATGCTTGCTAATTTTTAAGTGCTATTTCG
*
102875057 GTATTCTAAAAATGAGTTTCTAACACCGAGATAAATTTTGTAAGCATCTCTTCAAGGTTCAGCTT
66 GTATTCTAAAAATGAGTTTCTAACACCGAGATAAATTTTGTAAGCATCTCTTCAAGGTTCGGCTT
102875122 TTTCTCCTGTTGGTAAGGTGGTTAATGAAAACCTAGAAGGTGTTGTGGTCTTTGATTCCTTGGAC
131 TTTCTCCTGTTGGTAAGGTGGTTAATGAAAACCTAGAAGGTGTTGTGGTCTTTGATTCCTTGGAC
*
102875187 CACCCCACGAAAAATTGGGATGGTTCTTCCAACCTGCATTGTAAATGTTACTATAAGGGTTATTC
196 CACCCCACGAAAAATTGGGATGGTTCCTCCAACCTGCATTGTAAATGTTACTATAAGGGTTATTC
102875252 TAAGGTCTAGAATTGTTACCCATATAGTGGACTTGTTCTCCCTCGTTGCTGGGGTTGAAGGATGG
261 TAAGGTCTAGAATTGTTACCCATATAGTGGACTTGTTCTCCCTCGTTGCTGGGGTTGAAGGATGG
102875317 ATAATCTGTGTTTTGCATTCCTCCTCCATTTGAATCACACCTCATCACTGGATGTACTTGAATAG
326 ATAATCTGTGTTTTGCATTCCTCCTCCATTTGAATCACACCTCATCACTGGATGTACTTGAATAG
102875382 AATCATACAAACCATCAATATTTTTATTCAATACTTCCACCTAGTTAGATAGCATAGTGACCGCG
391 AATCATACAAACCATCAATATTTTTATTCAATACTTCCACCTAGTTAGATAGCATAGTGACCGCG
102875447 TCGAGGTTGAAAACACCAGTTGCTTTTGTTGGCTTTGTTCTCATTACTTGCCACTGATAGTTGTT
456 TCGAGGTTGAAAACACCAGTTGCTTTTGTTGGCTTTGTTCTCATTACTTGCCACTGATAGTTGTT
102875512 TAGTGACCTCTCTTCAATAAATTCGTAAGC
521 TAGTGACCTCTCTTCAATAAATTCGTAAGC
*
102875542 CAAGCTGACCTATTTGAGTTTCGAGCCCTTGAATCGATGCTTGCTGATTTTTAAGTGCTATTTCG
1 CAAGCTGACCTATTTGAGTTTCGAGCCCTTGAATCGATGCTTGCTAATTTTTAAGTGCTATTTCG
*
102875607 GTATTCTAAAAATGAGTTTCTAACACCGAGATAAATTTTGTAAGCATCTCTTCAAGGTTTGGCTT
66 GTATTCTAAAAATGAGTTTCTAACACCGAGATAAATTTTGTAAGCATCTCTTCAAGGTTCGGCTT
* *
102875672 TTTCTCCTGTTGGTAAGGTGGTTAATGAAAACCTAGAATGTGTTGTGGTCTTTGATTCCTTTGAC
131 TTTCTCCTGTTGGTAAGGTGGTTAATGAAAACCTAGAAGGTGTTGTGGTCTTTGATTCCTTGGAC
* * *
102875737 CACCCCACGAAAAATTAGAATGGTTCCTCCAACCTGCATTGTAAGTGTTACTATAAGGGTTATTC
196 CACCCCACGAAAAATTGGGATGGTTCCTCCAACCTGCATTGTAAATGTTACTATAAGGGTTATTC
*
102875802 TAAGGTCTAGAATTGTTACCCATATAGTGGACTTGTTCTTCCTCGTTGCTGGGGTTGAAGGATGG
261 TAAGGTCTAGAATTGTTACCCATATAGTGGACTTGTTCTCCCTCGTTGCTGGGGTTGAAGGATGG
102875867 ATAATCTGTGTTTTGCATTCCTCCTCCATTTGAATCACACCTCATCACTGGATGTACTTGAATAG
326 ATAATCTGTGTTTTGCATTCCTCCTCCATTTGAATCACACCTCATCACTGGATGTACTTGAATAG
102875932 AATCATACAAACCATCAATATTTTTATTCAATACTTCCACCTAGTTAGATAGCATAGTGACCGCG
391 AATCATACAAACCATCAATATTTTTATTCAATACTTCCACCTAGTTAGATAGCATAGTGACCGCG
*
102875997 TCGAGGTTGAAAACACCAGTTGTTTTTGTTGGCTTTGTTCTCATTACTTGCCACTGATAGTTGTT
456 TCGAGGTTGAAAACACCAGTTGCTTTTGTTGGCTTTGTTCTCATTACTTGCCACTGATAGTTGTT
*
102876062 TAGTGACCTCTCTTTAATAAATTCGTAAGC
521 TAGTGACCTCTCTTCAATAAATTCGTAAGC
102876092 C
1 C
102876093 TCTTTAGGTG
Statistics
Matches: 1618, Mismatches: 31, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
549 3 0.00
550 1615 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (550 bp):
CAAGCTGACCTATTTGAGTTTCGAGCCCTTGAATCGATGCTTGCTAATTTTTAAGTGCTATTTCG
GTATTCTAAAAATGAGTTTCTAACACCGAGATAAATTTTGTAAGCATCTCTTCAAGGTTCGGCTT
TTTCTCCTGTTGGTAAGGTGGTTAATGAAAACCTAGAAGGTGTTGTGGTCTTTGATTCCTTGGAC
CACCCCACGAAAAATTGGGATGGTTCCTCCAACCTGCATTGTAAATGTTACTATAAGGGTTATTC
TAAGGTCTAGAATTGTTACCCATATAGTGGACTTGTTCTCCCTCGTTGCTGGGGTTGAAGGATGG
ATAATCTGTGTTTTGCATTCCTCCTCCATTTGAATCACACCTCATCACTGGATGTACTTGAATAG
AATCATACAAACCATCAATATTTTTATTCAATACTTCCACCTAGTTAGATAGCATAGTGACCGCG
TCGAGGTTGAAAACACCAGTTGCTTTTGTTGGCTTTGTTCTCATTACTTGCCACTGATAGTTGTT
TAGTGACCTCTCTTCAATAAATTCGTAAGC
Found at i:102876826 original size:50 final size:50
Alignment explanation
Indices: 102876767--102876868 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
102876757 ATATCGGTCA
102876767 CGGCCTCTTGCTCTTCCTCTATATACTGTAGGCTTCGCCTTATTTCTCTT
1 CGGCCTCTTGCTCTTCCTCTATATACTGTAGGCTTCGCCTTATTTCTCTT
102876817 CGGCCTCTTGCTCTTCCTCTATATACTGTAGGCTTCGCCTTATTTCTCTT
1 CGGCCTCTTGCTCTTCCTCTATATACTGTAGGCTTCGCCTTATTTCTCTT
102876867 CG
1 CG
102876869 ATTTCTGCGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.10, C:0.32, G:0.15, T:0.43
Consensus pattern (50 bp):
CGGCCTCTTGCTCTTCCTCTATATACTGTAGGCTTCGCCTTATTTCTCTT
Found at i:102879766 original size:20 final size:21
Alignment explanation
Indices: 102879741--102879783 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
102879731 TGTAGAAGAG
*
102879741 TTGAACC-GATAAAAACTCAA
1 TTGAACCAGATAAAAAATCAA
*
102879761 TTGAACCAGGTAAAAAATCAA
1 TTGAACCAGATAAAAAATCAA
102879782 TT
1 TT
102879784 AAAAACATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.16, G:0.12, T:0.23
Consensus pattern (21 bp):
TTGAACCAGATAAAAAATCAA
Found at i:102880666 original size:21 final size:20
Alignment explanation
Indices: 102880633--102880671 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
102880623 TAATATGTTT
102880633 TTTTAAATAAAATGTTTTTAA
1 TTTTAAATAAAAT-TTTTTAA
* *
102880654 TTTTAATTTAAATTTTTT
1 TTTTAAATAAAATTTTTT
102880672 GTCATGTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTTAAATAAAATTTTTTAA
Found at i:102882319 original size:23 final size:23
Alignment explanation
Indices: 102882270--102882320 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
102882260 TTACGTTATT
* *
102882270 CACATTATTACGTTATATATATT
1 CACATTATTACGTTATACATATG
102882293 CACATTATTACGTTA-ACATCATG
1 CACATTATTACGTTATACAT-ATG
102882316 CACAT
1 CACAT
102882321 ATGAAATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (23 bp):
CACATTATTACGTTATACATATG
Found at i:102886102 original size:18 final size:18
Alignment explanation
Indices: 102886053--102886102 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
102886043 TACAAAATAG
102886053 ACCCACT-ACCCAAACCT
1 ACCCACTAACCCAAACCT
*
102886070 ACCCAAC-AGACCCAAACTT
1 ACCC-ACTA-ACCCAAACCT
102886089 ACCCACTAACCCAA
1 ACCCACTAACCCAA
102886103 TACTAACCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 4 0.14
18 10 0.36
19 14 0.50
ACGTcount: A:0.40, C:0.48, G:0.02, T:0.10
Consensus pattern (18 bp):
ACCCACTAACCCAAACCT
Found at i:102887142 original size:21 final size:21
Alignment explanation
Indices: 102887117--102887156 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
102887107 CAAAACTTTG
102887117 TTTTTGTTCAAAATTTAGTCC
1 TTTTTGTTCAAAATTTAGTCC
* * *
102887138 TTTTTTTTTAAATTTTAGT
1 TTTTTGTTCAAAATTTAGT
102887157 TTATTTTTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.62
Consensus pattern (21 bp):
TTTTTGTTCAAAATTTAGTCC
Found at i:102887298 original size:16 final size:16
Alignment explanation
Indices: 102887277--102887310 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102887267 CATAGTATTT
*
102887277 TTTTAAAATTATTTTA
1 TTTTAAAATTATTATA
*
102887293 TTTTAATATTATTATA
1 TTTTAAAATTATTATA
102887309 TT
1 TT
102887311 ATGTTTACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTAAAATTATTATA
Found at i:102887398 original size:21 final size:21
Alignment explanation
Indices: 102887372--102887425 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
102887362 TGTTATGTAC
102887372 ATATTATTTATACTATATTTA
1 ATATTATTTATACTATATTTA
*
102887393 ATATTA-TTATTATTATATTTA
1 ATATTATTTA-TACTATATTTA
*
102887414 CTATTATTTATA
1 ATATTATTTATA
102887426 AATATTAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 3 0.10
21 23 0.79
22 3 0.10
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (21 bp):
ATATTATTTATACTATATTTA
Found at i:102887460 original size:21 final size:21
Alignment explanation
Indices: 102887379--102887460 Score: 60
Period size: 21 Copynumber: 3.7 Consensus size: 21
102887369 TACATATTAT
*
102887379 TTATACTATATTTAATATTATTA
1 TTATA-TATATTT-ATATTTTTA
102887402 TTAT-TATATTTACTATTATTTA
1 TTATATATATTTA-TATT-TTTA
* *
102887424 -TAAATATTAGTGTATATTTTTA
1 TTATATA-TA-TTTATATTTTTA
*
102887446 TTATATATATATATA
1 TTATATATATTTATA
102887461 CTCTTTATGT
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
20 1 0.02
21 18 0.38
22 11 0.23
23 15 0.31
24 3 0.06
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
TTATATATATTTATATTTTTA
Found at i:102887590 original size:3 final size:3
Alignment explanation
Indices: 102887582--102887614 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
102887572 GTATTTTTGC
102887582 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102887615 ATTTATATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:102894249 original size:64 final size:66
Alignment explanation
Indices: 102894145--102894274 Score: 183
Period size: 65 Copynumber: 2.0 Consensus size: 66
102894135 CATACAATAG
* * *
102894145 CACATCTAGTTAGGATAATTTAATTTCATTTCAATCATAGCATCCTAATTA-TTTGACATAAGCA
1 CACATCTAGTTAGAAGAATTTAATTTCATCTCAATCATAGCATCCTAATTATTTTGACATAAGCA
102894209 T
66 T
* * * *
102894210 CACATCTAGTTAGAAGCATTTGA-TTCATCTCGATCATAGCATCCTAATTATTTTGGCATAAGCA
1 CACATCTAGTTAGAAGAATTTAATTTCATCTCAATCATAGCATCCTAATTATTTTGACATAAGCA
102894274 T
66 T
102894275 AGATACATGA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
64 25 0.44
65 32 0.56
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (66 bp):
CACATCTAGTTAGAAGAATTTAATTTCATCTCAATCATAGCATCCTAATTATTTTGACATAAGCA
T
Found at i:102894686 original size:177 final size:177
Alignment explanation
Indices: 102894411--102895678 Score: 1733
Period size: 177 Copynumber: 7.2 Consensus size: 177
102894401 AGTTGCAGTG
* *
102894411 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTAAAAATTACAGAT
1 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
*
102894476 CTTATCTCCATGTATTGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCT
66 CTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCT
* * * *
102894541 ATAGAGCATATTTTAGCCACCAACTTTATCTCTCTGAGGTAGCAAGA
131 ATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA
* * *
102894588 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAAGTTGCAGGAAGAAGACTGAAAATTATAGAT
1 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
* **
102894653 CTTATCTCCATGTATCGGCTATGGAGTAGATCGAAAATGGTAAGTCTTATCTCCATGTATCGGCT
66 CTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCT
* * * *
102894718 ATGGAGCAGATTTTAGCAACCAGCCTTATCTCTCTGATGTAGAAAAA
131 ATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA
* * *
102894765 AAGAAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAAATTACAGAT
1 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
* *
102894830 CTTATCTCCATGTATAGGCTATAGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCT
66 CTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCT
* * * * * *
102894895 ATGGAGTAGATTTTAGCCATCAGCCTTATCTCTCTAAGGTTG-TAGTG
131 ATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAG-A
* *
102894942 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTAAAAATTACAGAT
1 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
* *
102895007 CTTATCTCCATGTATTGGCTATGGAGCAGATCGAAAATGG-GAAGTCTTATCTCCATTTATCGGC
66 CTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCG-AGTCTTATCTCCATGTATCGGC
*
102895071 TATAGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA
130 TATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA
* * *
102895119 GAGCAGGTTGAAAATACAAGTATTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTACAGAT
1 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
* * *
102895184 CTTATCTCCATGTATCGGCTATGGAGTAGATTGAAAATGGTGAGTCTTATCTCCATGTATCGGCT
66 CTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCT
102895249 ATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA
131 ATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA
* *
102895296 GAGCAAGTTAAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
1 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
* * * * *
102895361 CTTATCTTCATGTATCGGCTATGAAGCGGATC-ATAAATGGCGAGTTTTATCTCCATGTATTGGC
66 CTTATCTCCATGTATCGGCTATGGAGCAGATCGA-AAATGGCGAGTCTTATCTCCATGTATCGGC
* * * *
102895425 TATGGAGTAGATTTTGGCCACCAGCCTTATCTTTCTGAGGTAGTAAGA
130 TATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA
* * * * * *
102895473 GAGTAGGTTGAAGGTACAAGTCTTATCTTCCTGATGTAGCAAGAAAGCAGACTAAAAATTACAGA
1 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGC-AGGAAGCAGACTGAAAATTACAGA
* * *
102895538 TCTTA--T-C-----TC--C-ATGGAGCAGATTGAAAATGGCGAGTCTTATCTCCAAGTATTGGC
65 TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGC
* ** * * * * *
102895592 TATGGAGCATATTTTAGCCGTCAACCTTATCTCCCTGAAGTTGC-AGTG
130 TATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAG-A
* *
102895640 GAGCAAGTTGAAG-TCACAA-ACATTATCTTCCTGAAGTTG
1 GAGCAGGTTGAAGAT-ACAAGTC-TTATCTTCCTGAAGTTG
102895679 TTGTAAGACT
Statistics
Matches: 974, Mismatches: 107, Indels: 30
0.88 0.10 0.03
Matches are distributed among these distances:
166 4 0.00
167 100 0.10
168 2 0.00
170 2 0.00
175 1 0.00
176 4 0.00
177 831 0.85
178 30 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (177 bp):
GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
CTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCT
ATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA
Found at i:102894866 original size:45 final size:46
Alignment explanation
Indices: 102894809--102894905 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 46
102894799 AGTTGTAGGA
*
102894809 AGCAGA-CTGAAAATTAC-AGATCTTATCTCCATGTATAGGCTATAG
1 AGCAGATCTGAAAATGACGAG-TCTTATCTCCATGTATAGGCTATAG
* * *
102894854 AGCAGATC-GAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGG
1 AGCAGATCTGAAAATGACGAGTCTTATCTCCATGTATAGGCTATAG
*
102894899 AGTAGAT
1 AGCAGAT
102894906 TTTAGCCATC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
45 42 0.93
46 3 0.07
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (46 bp):
AGCAGATCTGAAAATGACGAGTCTTATCTCCATGTATAGGCTATAG
Found at i:102895220 original size:45 final size:44
Alignment explanation
Indices: 102895163--102895260 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 44
102895153 AGTTACAGGA
*
102895163 AGCAGACTGAAAAT-TACAGATCTTATCTCCATGTATCGGCTATGG
1 AGCAGATTGAAAATGT-CAG-TCTTATCTCCATGTATCGGCTATGG
* *
102895208 AGTAGATTGAAAATGGTGAGTCTTATCTCCATGTATCGGCTATGG
1 AGCAGATTGAAAAT-GTCAGTCTTATCTCCATGTATCGGCTATGG
102895253 AGCAGATT
1 AGCAGATT
102895261 TTAGCCACCA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
45 44 0.94
46 2 0.04
47 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (44 bp):
AGCAGATTGAAAATGTCAGTCTTATCTCCATGTATCGGCTATGG
Found at i:102895565 original size:34 final size:34
Alignment explanation
Indices: 102895518--102895582 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 34
102895508 GTAGCAAGAA
*
102895518 AGCAGACTAAAAATTAC-AGATCTTATCTCCATGG
1 AGCAGACTAAAAATGACGAG-TCTTATCTCCATGG
* * *
102895552 AGCAGATTGAAAATGGCGAGTCTTATCTCCA
1 AGCAGACTAAAAATGACGAGTCTTATCTCCA
102895583 AGTATTGGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
34 24 0.92
35 2 0.08
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (34 bp):
AGCAGACTAAAAATGACGAGTCTTATCTCCATGG
Found at i:102897150 original size:29 final size:30
Alignment explanation
Indices: 102897085--102897151 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 30
102897075 ACACATATTT
*
102897085 GTTTATTTCAAATACTTTCATTTATTAATAA
1 GTTT-TTTCAAATACTTTCATTTAATAATAA
* * *
102897116 -TATTTTCATATACTTT-ATTTAATATTAA
1 GTTTTTTCAAATACTTTCATTTAATAATAA
102897144 GTTTTTTC
1 GTTTTTTC
102897152 CATCTCATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 10 0.33
29 18 0.60
30 2 0.07
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.57
Consensus pattern (30 bp):
GTTTTTTCAAATACTTTCATTTAATAATAA
Found at i:102900614 original size:25 final size:24
Alignment explanation
Indices: 102900576--102900632 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
102900566 TATATTTTTA
102900576 TATATTATTTTTAACT-TTATATTATG
1 TATA-TATTTTTAA-TATTATATT-TG
*
102900602 TATATATTTTTAATATTATATTTT
1 TATATATTTTTAATATTATATTTG
102900626 TATATAT
1 TATATAT
102900633 ATTATGTACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 9 0.31
25 16 0.55
26 4 0.14
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
TATATATTTTTAATATTATATTTG
Found at i:102900618 original size:37 final size:37
Alignment explanation
Indices: 102900547--102900660 Score: 149
Period size: 37 Copynumber: 3.1 Consensus size: 37
102900537 GTGTATATTC
*
102900547 TTTTAATAGATATTATGTATATATTTTTATATATTAT-
1 TTTTAATATATATTATGTATATATTTTTA-ATATTATA
*
102900584 TTTTAACTTTATATTATGTATATATTTTTAATATTATA
1 TTTTAA-TATATATTATGTATATATTTTTAATATTATA
* * * *
102900622 TTTTTATATATATTATGTACATATTTTCAATACTATA
1 TTTTAATATATATTATGTATATATTTTTAATATTATA
102900659 TT
1 TT
102900661 ATTTATGTAT
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
37 42 0.62
38 26 0.38
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (37 bp):
TTTTAATATATATTATGTATATATTTTTAATATTATA
Found at i:102900647 original size:62 final size:62
Alignment explanation
Indices: 102900529--102900674 Score: 136
Period size: 62 Copynumber: 2.3 Consensus size: 62
102900519 TACATGCATA
* * * * *
102900529 TATATTATGTGTATATTCTTTTAATAGATATTATGTATATATTTTTATATATTATTTTTAACT-T
1 TATATTATGTATATA-T-TTTTAATAGATATTATGTATATATTATTATATAATATTTTCAA-TAC
* * *
102900593 TATATTATGTATATATTTTTAATATTATATT-TTTATATA-TATTATGTACATATTTTCAATAC
1 TATATTATGTATATATTTTTAATA-GATATTATGTATATATTATTATATA-ATATTTTCAATAC
* *
102900655 TATATTATTTATGTATTTTT
1 TATATTATGTATATATTTTT
102900675 TTCTTACATA
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
61 8 0.12
62 41 0.59
63 6 0.09
64 14 0.20
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (62 bp):
TATATTATGTATATATTTTTAATAGATATTATGTATATATTATTATATAATATTTTCAATAC
Found at i:102900675 original size:27 final size:27
Alignment explanation
Indices: 102900645--102900697 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
102900635 TATGTACATA
102900645 TTTTCAATACTATATTAT-TTATGTATTT
1 TTTTC-ATAC-ATATTATCTTATGTATTT
*
102900673 TTTTCTTACATATTATCTTATGTAT
1 TTTTCATACATATTATCTTATGTAT
102900698 ATATATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 11 0.48
28 5 0.22
ACGTcount: A:0.26, C:0.09, G:0.04, T:0.60
Consensus pattern (27 bp):
TTTTCATACATATTATCTTATGTATTT
Found at i:102903395 original size:20 final size:20
Alignment explanation
Indices: 102903366--102903406 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
102903356 TTTTTTATCA
102903366 AATGATTATTATTATTATTTT
1 AATGATTATTATTATT-TTTT
*
102903387 AATGA-TATTTTTATTTTTT
1 AATGATTATTATTATTTTTT
102903406 A
1 A
102903407 TACTTTTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 9 0.47
21 5 0.26
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (20 bp):
AATGATTATTATTATTTTTT
Found at i:102905533 original size:14 final size:16
Alignment explanation
Indices: 102905514--102905545 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
102905504 TTAAGAAAAA
102905514 ATAATATA-AA-ATTT
1 ATAATATATAACATTT
102905528 ATAATATATAACATTT
1 ATAATATATAACATTT
102905544 AT
1 AT
102905546 GAAAACATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAATATATAACATTT
Found at i:102906964 original size:5 final size:5
Alignment explanation
Indices: 102906954--102906996 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
102906944 ATATTTGTGA
102906954 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
102906997 GAACATACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:102911756 original size:3 final size:3
Alignment explanation
Indices: 102911748--102911792 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
102911738 ATGTTTTTAC
102911748 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
102911793 TTTGGAATCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:102912158 original size:3 final size:3
Alignment explanation
Indices: 102912152--102912195 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
102912142 ATTCATGTTG
*
102912152 TTA TTA TTA TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
102912196 TTACATTTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:102912536 original size:29 final size:27
Alignment explanation
Indices: 102912466--102912541 Score: 66
Period size: 28 Copynumber: 2.7 Consensus size: 27
102912456 AAAATTCAAA
*
102912466 AAAAATATAAAAACTATT-TTTAAAAATT
1 AAAAATA-AAAAA-AATTATTTAAAAATT
* **
102912494 AAAAATCATTAAAATTATTTAAAAAGTAT
1 AAAAATAAAAAAAATTATTTAAAAA-T-T
102912523 AAAAATAAAAAAAA-TATTT
1 AAAAATAAAAAAAATTATTT
102912542 TTTTAATTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
26 3 0.08
27 11 0.29
28 12 0.32
29 12 0.32
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (27 bp):
AAAAATAAAAAAAATTATTTAAAAATT
Found at i:102913361 original size:173 final size:173
Alignment explanation
Indices: 102913169--102913519 Score: 702
Period size: 173 Copynumber: 2.0 Consensus size: 173
102913159 ATAATAATAA
102913169 TAATATTATTATTATTATAGTTTTGGTAAATGCTTAATACCTTTATTTTAACCTTCACATTTCAA
1 TAATATTATTATTATTATAGTTTTGGTAAATGCTTAATACCTTTATTTTAACCTTCACATTTCAA
102913234 GTAGAATGGGACAAATAGGAAAATAAATCAGTCATGTTGTTTAGAGTAAGTTAGTTGCCATTTTT
66 GTAGAATGGGACAAATAGGAAAATAAATCAGTCATGTTGTTTAGAGTAAGTTAGTTGCCATTTTT
102913299 ATCTTTTGTTACTTATTTACTTTTATATGTTCCTTTTTCAAAT
131 ATCTTTTGTTACTTATTTACTTTTATATGTTCCTTTTTCAAAT
102913342 TAATATTATTATTATTATAGTTTTGGTAAATGCTTAATACCTTTATTTTAACCTTCACATTTCAA
1 TAATATTATTATTATTATAGTTTTGGTAAATGCTTAATACCTTTATTTTAACCTTCACATTTCAA
102913407 GTAGAATGGGACAAATAGGAAAATAAATCAGTCATGTTGTTTAGAGTAAGTTAGTTGCCATTTTT
66 GTAGAATGGGACAAATAGGAAAATAAATCAGTCATGTTGTTTAGAGTAAGTTAGTTGCCATTTTT
102913472 ATCTTTTGTTACTTATTTACTTTTATATGTTCCTTTTTCAAAT
131 ATCTTTTGTTACTTATTTACTTTTATATGTTCCTTTTTCAAAT
102913515 TAATA
1 TAATA
102913520 CAAAAATCAT
Statistics
Matches: 178, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
173 178 1.00
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.46
Consensus pattern (173 bp):
TAATATTATTATTATTATAGTTTTGGTAAATGCTTAATACCTTTATTTTAACCTTCACATTTCAA
GTAGAATGGGACAAATAGGAAAATAAATCAGTCATGTTGTTTAGAGTAAGTTAGTTGCCATTTTT
ATCTTTTGTTACTTATTTACTTTTATATGTTCCTTTTTCAAAT
Found at i:102919815 original size:9 final size:10
Alignment explanation
Indices: 102919801--102919919 Score: 60
Period size: 10 Copynumber: 12.4 Consensus size: 10
102919791 AAATGGAAAG
102919801 AAAATATTA-
1 AAAATATTAT
102919810 AAAATATTAT
1 AAAATATTAT
*
102919820 AAAATTTTAGCT
1 AAAATATTA--T
*
102919832 AAAA-GTTATT
1 AAAATATTA-T
102919842 AAAATATTA-
1 AAAATATTAT
*
102919851 AAAAAATGT-T
1 AAAATAT-TAT
*
102919861 GAAA-ATTAT
1 AAAATATTAT
102919870 ACAAA-A-TAT
1 A-AAATATTAT
102919879 AAAAT-TTAT
1 AAAATATTAT
* *
102919888 TAAATATCAT
1 AAAATATTAT
102919898 AAAAT-TT-T
1 AAAATATTAT
*
102919906 AAAAAATTAT
1 AAAATATTAT
102919916 AAAA
1 AAAA
102919920 ACTATTAAAT
Statistics
Matches: 85, Mismatches: 12, Indels: 25
0.70 0.10 0.20
Matches are distributed among these distances:
8 9 0.11
9 32 0.38
10 33 0.39
11 6 0.07
12 5 0.06
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (10 bp):
AAAATATTAT
Found at i:102920586 original size:15 final size:16
Alignment explanation
Indices: 102920560--102920592 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
102920550 AAATTCTTTG
*
102920560 TTTAATTTTTTTTGAA
1 TTTAATTTTTTTTAAA
102920576 TTTAA-TTTTTTTAAA
1 TTTAATTTTTTTTAAA
102920591 TT
1 TT
102920593 AAAAAAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTAATTTTTTTTAAA
Found at i:102920752 original size:48 final size:47
Alignment explanation
Indices: 102920688--102920799 Score: 138
Period size: 48 Copynumber: 2.3 Consensus size: 47
102920678 AGTGATAATT
102920688 TTAAATTTTCAATACTATTCGATATTATT-TTAATTTATGCAAATT-TAA
1 TTAAA-TTTCAATACTATTCGATATT-TTATTAATTTATGC-AATTATAA
* *
102920736 TTAAATTTGCAATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAATTT-CAATACTATTCGATATTTTATTAATTTATGCAATTATAA
*
102920784 TTACACTTTCAATACT
1 TTA-AATTTCAATACT
102920800 GCTTGATTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
47 9 0.16
48 44 0.77
49 4 0.07
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.49
Consensus pattern (47 bp):
TTAAATTTCAATACTATTCGATATTTTATTAATTTATGCAATTATAA
Found at i:102920806 original size:48 final size:45
Alignment explanation
Indices: 102920688--102920822 Score: 137
Period size: 48 Copynumber: 2.8 Consensus size: 45
102920678 AGTGATAATT
*
102920688 TTAAATTTTCAATACTATTCGATATTATTTTAATTTATGCAAATTTAA
1 TTAAA-TTTCAATACTATT-GATATT-TTTTCATTTATGCAAATTTAA
102920736 TTAAATTTGCAATACTATTTGATATTTTATTCATTTATGC-AATTATAA
1 TTAAATTT-CAATACTA-TTGATATTTT-TTCATTTATGCAAATT-TAA
* * *
102920784 TTACACTTTCAATACTGCTTGATTTTTTTTTCATTTATG
1 TTA-AATTTCAATACT-ATTGA-TATTTTTTCATTTATG
102920823 ATGTTTGCAT
Statistics
Matches: 76, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
47 9 0.12
48 56 0.74
49 11 0.14
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (45 bp):
TTAAATTTCAATACTATTGATATTTTTTCATTTATGCAAATTTAA
Found at i:102922441 original size:18 final size:18
Alignment explanation
Indices: 102922418--102922461 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
102922408 TGCCAGGTAC
*
102922418 GTATCCTTGCCCTTATAT
1 GTATCCTTACCCTTATAT
*
102922436 GTATCCTAACCCTTATAT
1 GTATCCTTACCCTTATAT
*
102922454 GTTTCCTT
1 GTATCCTT
102922462 TTCCTAGTCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.09, T:0.45
Consensus pattern (18 bp):
GTATCCTTACCCTTATAT
Found at i:102926101 original size:126 final size:125
Alignment explanation
Indices: 102925955--102926462 Score: 836
Period size: 126 Copynumber: 4.0 Consensus size: 125
102925945 TTATAACCTC
* *
102925955 ATTTTTTTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGTTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
* * *
102926020 ACAGTGCATCCTGCTTGAAGCATTTTCGGCACTATTTATTCAGAAACGTCTACTCATAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCAGCACTATTT-TTCAGAAACGTCTACTCAGAATT
102926081 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
* * *
102926146 ACAGTACATCCTGCTTGAAACGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCAGCACTATTT-TTCAGAAACGTCTACTCAGAATT
*
102926207 ATTTTTTTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
*
102926272 ACAGTGTATCCTGCTTGAAGCGTTTTCAGCACTATTTTTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCAGCACTA-TTTTTCAGAAACGTCTACTCAGAATT
* *
102926333 ATTTTTCTACGAACTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTTTTCTAGAAATTTTGTTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
* * *
102926398 ACAGTGCATCCTGCTTGAAGCGTTTTCCAACACTATTTTTCCAGAAACATCTGCTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTT-CAGCACTATTTTT-CAGAAACGTCTACTCAGAATT
102926460 ATT
1 ATT
102926463 CTTGCAGAAA
Statistics
Matches: 360, Mismatches: 19, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
126 328 0.91
127 32 0.09
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (125 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTTTCAGCACTATTTTTCAGAAACGTCTACTCAGAATT
Found at i:102926785 original size:20 final size:20
Alignment explanation
Indices: 102926760--102926832 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 20
102926750 TCTTGTATAT
102926760 ATCAATTAACCTTAAATTTA
1 ATCAATTAACCTTAAATTTA
* *
102926780 ATCAATTAACCCTAAACCTTAA
1 ATCAATTAACCTTAAA--TTTA
*
102926802 ATCAA-T--CCAT-AATTTA
1 ATCAATTAACCTTAAATTTA
*
102926818 ATCAATTAACTTTAA
1 ATCAATTAACCTTAA
102926833 TACCCTAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
16 8 0.20
17 1 0.02
18 2 0.05
19 5 0.12
20 16 0.39
21 1 0.02
22 8 0.20
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36
Consensus pattern (20 bp):
ATCAATTAACCTTAAATTTA
Found at i:102934869 original size:18 final size:18
Alignment explanation
Indices: 102934846--102934880 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102934836 GTCAATTCTA
102934846 AAATCAAATTAAAAATTT
1 AAATCAAATTAAAAATTT
* *
102934864 AAATCAATTTTAAAATT
1 AAATCAAATTAAAAATT
102934881 AGATTAAAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATCAAATTAAAAATTT
Found at i:102935288 original size:125 final size:128
Alignment explanation
Indices: 102935146--102935386 Score: 326
Period size: 127 Copynumber: 1.9 Consensus size: 128
102935136 AGTATATCAA
* * * * *
102935146 AGATATTATGTTATATACCACAATTT-TAAGGGA-ATACCAATATTTCTAAGAAATCTCATTAGA
1 AGATATTATGATATATACCACAATTTCAAAAGGATATACCAAAATTTCTAAGAAACCTCATTAGA
* **
102935209 AATTTTGGTATATC-AAATCATGTTACACAAGCTTTTACCAAAATTTTTAAGAGTTCAACTTT
66 AATTTTGGTATACCAAAATCATGTTACACAAGCTAATACCAAAATTTTTAAGAGTTCAACTTT
* * * * *
102935271 AGATATTTTGATATATACCACAATTTCAAAAGTATATATCAAAATTTCTAAGGAACCTCGTTAGA
1 AGATATTATGATATATACCACAATTTCAAAAGGATATACCAAAATTTCTAAGAAACCTCATTAGA
* *
102935336 AATTTTGGTATACCAAAATCATGTTGCACAAGCTAATACCAAGATTTTTAA
66 AATTTTGGTATACCAAAATCATGTTACACAAGCTAATACCAAAATTTTTAA
102935387 TGGATTGCTA
Statistics
Matches: 98, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
125 24 0.24
126 4 0.04
127 38 0.39
128 32 0.33
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (128 bp):
AGATATTATGATATATACCACAATTTCAAAAGGATATACCAAAATTTCTAAGAAACCTCATTAGA
AATTTTGGTATACCAAAATCATGTTACACAAGCTAATACCAAAATTTTTAAGAGTTCAACTTT
Found at i:102936492 original size:34 final size:34
Alignment explanation
Indices: 102936454--102936537 Score: 159
Period size: 34 Copynumber: 2.4 Consensus size: 34
102936444 AAAAATAATA
102936454 AATCGATTGTTATATTGGAATATAGCTTCTTTTG
1 AATCGATTGTTATATTGGAATATAGCTTCTTTTG
102936488 AATCGATTGTTATATTGGAATATAGCTTCTTTTG
1 AATCGATTGTTATATTGGAATATAGCTTCTTTTG
102936522 AATCGATTGTTTATAT
1 AATCGATTG-TTATAT
102936538 GTTTAAATCG
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
34 43 0.88
35 6 0.12
ACGTcount: A:0.27, C:0.08, G:0.17, T:0.48
Consensus pattern (34 bp):
AATCGATTGTTATATTGGAATATAGCTTCTTTTG
Found at i:102938893 original size:19 final size:19
Alignment explanation
Indices: 102938869--102938906 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
102938859 GTTAAATTTT
*
102938869 ATTTTTGGCCTCTAGACTA
1 ATTTTTGGCCACTAGACTA
102938888 ATTTTTGGCCACTAGACTA
1 ATTTTTGGCCACTAGACTA
102938907 TGTTAAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (19 bp):
ATTTTTGGCCACTAGACTA
Found at i:102944920 original size:30 final size:30
Alignment explanation
Indices: 102944884--102944984 Score: 175
Period size: 30 Copynumber: 3.4 Consensus size: 30
102944874 ACTTTTCTCA
102944884 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
102944914 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
102944944 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
102944974 ACTAGCCACAC
1 ACTAGCCACAC
102944985 TTGCTCCATT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.28, C:0.50, G:0.04, T:0.19
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:102944992 original size:30 final size:29
Alignment explanation
Indices: 102944884--102945028 Score: 164
Period size: 30 Copynumber: 4.8 Consensus size: 29
102944874 ACTTTTCTCA
*
102944884 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACA-CTTCTCCACCACCAACTCC
* *
102944914 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCAC-ACTTCTCCACCACCAACTCC
*
102944944 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACA-CTTCTCCACCACCAACTCC
** *
102944974 ACTAGCCACACTTGCTCCATTACCTACTCC
1 ACTAGCCACACTT-CTCCACCACCAACTCC
* *
102945004 ACTAACCACACTTGCTCCATCACCA
1 ACTAGCCACACTT-CTCCACCACCA
102945029 CTTGTACCTA
Statistics
Matches: 101, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
29 3 0.03
30 98 0.97
ACGTcount: A:0.27, C:0.48, G:0.04, T:0.21
Consensus pattern (29 bp):
ACTAGCCACACTTCTCCACCACCAACTCC
Found at i:102945553 original size:23 final size:23
Alignment explanation
Indices: 102945516--102945647 Score: 65
Period size: 25 Copynumber: 5.5 Consensus size: 23
102945506 TTTTTTTTGT
102945516 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
102945539 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
102945561 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* * *
102945584 TATTACGTATATATATATTTTATACTA
1 TATTA--TATATAT-T-CTTAATATTA
* *
102945611 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
102945636 TATTATTTATAT
1 TATTATATATAT
102945648 ATATATTTTT
Statistics
Matches: 81, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
21 3 0.04
22 15 0.19
23 18 0.22
24 4 0.05
25 30 0.37
26 1 0.01
27 6 0.07
28 3 0.04
29 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:102945611 original size:27 final size:27
Alignment explanation
Indices: 102945581--102945699 Score: 75
Period size: 27 Copynumber: 4.5 Consensus size: 27
102945571 ATTTTAAATT
102945581 CTATATTACGTATATATATATTTTATA
1 CTATATTACGTATATATATATTTTATA
* * * *
102945608 CTATTTTA--TGTATATATCTTTAATA
1 CTATATTACGTATATATATATTTTATA
* ** *
102945633 TTATATTATTTATATATATATTTTTCTA
1 CTATATTACGTATATATATA-TTTTATA
* * * *
102945661 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTA-CGTATATATATATTTTATA
*
102945687 CTATATTATGTAT
1 CTATATTACGTAT
102945700 GTATTTTTAA
Statistics
Matches: 68, Mismatches: 19, Indels: 11
0.69 0.19 0.11
Matches are distributed among these distances:
25 20 0.29
26 5 0.07
27 28 0.41
28 15 0.22
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.55
Consensus pattern (27 bp):
CTATATTACGTATATATATATTTTATA
Found at i:102945621 original size:25 final size:25
Alignment explanation
Indices: 102945530--102945736 Score: 79
Period size: 25 Copynumber: 8.2 Consensus size: 25
102945520 ATTATATTTC
* * *
102945530 TTAATATTATATTATATATAT-TCT
1 TTAATACTATATTATGTATATATAT
* *
102945554 TT--TAATATATTAGGTATAT-T-T
1 TTAATACTATATTATGTATATATAT
* * *
102945575 TAAATTCTATATTACGTATATATATAT
1 TTAATACTATATTA--TGTATATATAT
* * *
102945602 TTTATACTATTTTATGTATATATCT
1 TTAATACTATATTATGTATATATAT
* *
102945627 TTAATATTATATTATTTATATATATATTTT
1 TTAATACTATATTA--TGTATATATA---T
** * *
102945657 TCTACATGTTATCTTATGTATATAT-C
1 T-TA-ATACTATATTATGTATATATAT
* *
102945683 TT-A-ACTATATTATGTATGTATTT
1 TTAATACTATATTATGTATATATAT
* * *
102945706 TTAACACTATATTATGTACATATTT
1 TTAATACTATATTATGTATATATAT
102945731 TTAATA
1 TTAATA
102945737 TTATCACGTA
Statistics
Matches: 136, Mismatches: 31, Indels: 31
0.69 0.16 0.16
Matches are distributed among these distances:
21 2 0.01
22 29 0.21
23 11 0.08
24 3 0.02
25 49 0.36
26 2 0.01
27 19 0.14
30 10 0.07
31 2 0.01
32 9 0.07
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (25 bp):
TTAATACTATATTATGTATATATAT
Found at i:102945643 original size:30 final size:30
Alignment explanation
Indices: 102945603--102945684 Score: 80
Period size: 28 Copynumber: 2.8 Consensus size: 30
102945593 TATATATATT
*
102945603 TTATACTATTTTATGTATATATCTTTAATA
1 TTATATTATTTTATGTATATATCTTTAATA
* **
102945633 TTATATTA-TTTATATATATAT-TTTTCTA
1 TTATATTATTTTATGTATATATCTTTAATA
* * *
102945661 -CATGTTATCTTATGTATATATCTT
1 TTATATTATTTTATGTATATATCTT
102945685 AACTATATTA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
27 5 0.12
28 16 0.38
29 14 0.33
30 7 0.17
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (30 bp):
TTATATTATTTTATGTATATATCTTTAATA
Found at i:102948756 original size:26 final size:26
Alignment explanation
Indices: 102948680--102948763 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
102948670 CATGAAATTC
* *
102948680 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
102948706 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
102948732 TTATCATGGAACATTTACCTAACCTT
1 TTATCATGGAACATTTACCTAACCTA
102948758 TTATCA
1 TTATCA
102948764 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:102952591 original size:33 final size:34
Alignment explanation
Indices: 102952553--102952634 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 34
102952543 GCCTAAGCCC
*
102952553 ATTCAGGTAACAGTAATACTGGGCCAGAG-CCCTT
1 ATTCAGATAACAGTAA-ACTGGGCCAGAGCCCCTT
* * **
102952587 -TTCAGATTACAATAAACTGGGCCTTAGCCCCTT
1 ATTCAGATAACAGTAAACTGGGCCAGAGCCCCTT
102952620 ATTCAGATAACAGTA
1 ATTCAGATAACAGTA
102952635 TGGCCCATAG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 10 0.26
33 17 0.44
34 12 0.31
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (34 bp):
ATTCAGATAACAGTAAACTGGGCCAGAGCCCCTT
Found at i:102954519 original size:26 final size:26
Alignment explanation
Indices: 102954481--102954538 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
102954471 CATGAAATTC
102954481 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
102954507 TTATCATGGAACATTTACCTAACCTT
1 TTATCATGAAACATTTACCTAACCTA
102954533 TTATCA
1 TTATCA
102954539 ATTTGTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.38
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:102957987 original size:22 final size:22
Alignment explanation
Indices: 102957937--102957980 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
102957927 GGTCCTCTCG
102957937 CAATTT-TTATATTTTTTAATTT
1 CAATTTATT-TATTTTTTAATTT
102957959 CAATTTATTTATTTTTTAATTT
1 CAATTTATTTATTTTTTAATTT
102957981 AGCTTTAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (22 bp):
CAATTTATTTATTTTTTAATTT
Found at i:102958217 original size:24 final size:24
Alignment explanation
Indices: 102958181--102958227 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
102958171 AATTTAACCC
**
102958181 TATATATTTATTTCTATTATTATA
1 TATATATAAATTTCTATTATTATA
* *
102958205 TATATATAAATTTTTATTGTTAT
1 TATATATAAATTTCTATTATTAT
102958228 TTGCTTTATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (24 bp):
TATATATAAATTTCTATTATTATA
Found at i:102958275 original size:20 final size:19
Alignment explanation
Indices: 102958250--102958383 Score: 100
Period size: 20 Copynumber: 6.8 Consensus size: 19
102958240 TATTTTTAAA
102958250 TTATATATTATATGATTATT
1 TTATATATTATAT-ATTATT
102958270 TTATATATTACTCATATTATT
1 TTATATATTA-T-ATATTATT
102958291 TATATATATTATATATTATT
1 T-TATATATTATATATTATT
* *
102958311 TTCACATA-TATACT-TTCATA
1 TT-ATATATTATA-TATT-ATT
*
102958331 TTATATATTGTAT-TTA--
1 TTATATATTATATATTATT
102958347 TTATATATTAT-TATGTCATT
1 TTATATATTATATAT-T-ATT
*
102958367 TTATACTATTAAATATT
1 TTATA-TATTATATATT
102958384 TTTATCTACA
Statistics
Matches: 94, Mismatches: 6, Indels: 27
0.74 0.05 0.21
Matches are distributed among these distances:
15 1 0.01
16 11 0.12
17 1 0.01
18 2 0.02
19 14 0.15
20 36 0.38
21 15 0.16
22 14 0.15
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (19 bp):
TTATATATTATATATTATT
Found at i:102958289 original size:29 final size:26
Alignment explanation
Indices: 102958239--102958309 Score: 72
Period size: 29 Copynumber: 2.6 Consensus size: 26
102958229 TGCTTTATTT
*
102958239 TTATTTT-TAAATTATATATTATATGA
1 TTATTTTATATATTATATATTAT-TGA
*
102958265 TTATTTTATATATTACTCATATTATTTA
1 TTATTTTATATATTA-T-ATATTATTGA
*
102958293 TATATATTATATATTAT
1 T-TATTTTATATATTAT
102958310 TTTCACATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 7 0.18
27 6 0.16
28 5 0.13
29 20 0.53
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (26 bp):
TTATTTTATATATTATATATTATTGA
Found at i:102958357 original size:7 final size:7
Alignment explanation
Indices: 102958249--102958309 Score: 65
Period size: 7 Copynumber: 8.7 Consensus size: 7
102958239 TTATTTTTAA
102958249 ATTATAT
1 ATTATAT
102958256 ATTATAT
1 ATTATAT
102958263 GATTAT-T
1 -ATTATAT
102958270 -TTATAT
1 ATTATAT
102958276 ATTACTCAT
1 ATTA-T-AT
*
102958285 ATTATTT
1 ATTATAT
102958292 A-TATAT
1 ATTATAT
102958298 ATTATAT
1 ATTATAT
102958305 ATTAT
1 ATTAT
102958310 TTTCACATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
5 4 0.09
6 6 0.13
7 23 0.50
8 7 0.15
9 6 0.13
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:102958708 original size:17 final size:17
Alignment explanation
Indices: 102958651--102958708 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
102958641 TCTAAACCAT
* *
102958651 TATATTTTATGTTTTTA
1 TATATTATATATTTTTA
*
102958668 TATAATTAT-TATTCTTA
1 TAT-ATTATATATTTTTA
102958685 TA-A--ATATATTTTTA
1 TATATTATATATTTTTA
102958699 TATATTATAT
1 TATATTATAT
102958709 CATTAAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
13 2 0.06
14 9 0.28
15 2 0.06
17 15 0.47
18 4 0.12
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
TATATTATATATTTTTA
Found at i:102974779 original size:46 final size:46
Alignment explanation
Indices: 102974712--102974882 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
102974702 NNNNNNNNNN
102974712 TAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCGTTCGCATTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATTCA
* *
102974757 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA-TC-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATTCA
* * ** * *
102974805 TCA-TGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATTCA
*
102974850 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
102974883 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 2 0.02
45 13 0.12
46 49 0.47
47 26 0.25
48 3 0.03
49 3 0.03
50 2 0.02
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATTCA
Found at i:102974883 original size:93 final size:92
Alignment explanation
Indices: 102974716--102974886 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 92
102974706 NNNNNNTAAG
** * *
102974716 TGAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCATTCATAAGTGAACTCAGACTCAACTCAA
1 TGAACTCGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
102974781 CGAGCTCGGATGCCTAGTTACATCTCA
66 CGAGCTCGGATGCCTAGTTACATCTCA
* *
102974808 TGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTC-GACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
102974873 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
102974887 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 7 0.10
93 64 0.90
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (92 bp):
TGAACTCGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCA
Found at i:102976445 original size:20 final size:20
Alignment explanation
Indices: 102976392--102976447 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
102976382 TTCTTAGTTT
102976392 TTTTTGGTTAGG--TTTTTC
1 TTTTTGGTTAGGTTTTTTTC
** ***
102976410 TTTTTTCTTCTTTTTTTTTC
1 TTTTTGGTTAGGTTTTTTTC
102976430 TTTTTGGTTAGGTTTTTT
1 TTTTTGGTTAGGTTTTTT
102976448 GGGGGGCTTA
Statistics
Matches: 26, Mismatches: 10, Indels: 2
0.68 0.26 0.05
Matches are distributed among these distances:
18 7 0.27
20 19 0.73
ACGTcount: A:0.04, C:0.07, G:0.14, T:0.75
Consensus pattern (20 bp):
TTTTTGGTTAGGTTTTTTTC
Found at i:102977401 original size:71 final size:72
Alignment explanation
Indices: 102977200--102977556 Score: 360
Period size: 76 Copynumber: 4.8 Consensus size: 72
102977190 TGTGATCTGA
*
102977200 AGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTTTTGAAAGACAGAAATTGAAAATACCT
1 AGCTCAACTCACCTCTCGCAATATGAGTTGA----TATTTTGAAA-ACAGAAATTGAAAATACCT
* *
102977265 CAGCATGTGAACC-G
61 CA--ACGTG-TCCTG
* * * *
102977279 AGGCTCAACTCACCTCTCACAATATAAGTTGATTTTTTGAAAACAAAAATTGAAAATACCTCAAC
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAAATACCTCAAC
*
102977344 GTGTCTTG
65 GTGTCCTG
** * *
102977352 AGGCTCAAC-CATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGC
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAAATACCTCAAC
*
102977415 ATGTCCTG
65 GTGTCCTG
* * * *
102977423 AGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATTGAAATTACCTC
1 AGCTCAACTCACCTCTCGCAATATGAGTTGA----TATTTTGAAAACAGAAATTGAAAATACCTC
*
102977488 AGCGTGTCCTG
62 AACGTGTCCTG
* *
102977499 AGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTAAAAGGCAGAAATTGAAAA
1 AGCTCAACTCACCTCTCGCAATATGAGTTG-ATATTTTGAAAA--CAGAAATTGAAAA
102977557 ACGGAAATTG
Statistics
Matches: 241, Mismatches: 26, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
70 7 0.03
71 54 0.22
72 19 0.08
73 23 0.10
75 32 0.13
76 76 0.32
77 1 0.00
79 1 0.00
80 28 0.12
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (72 bp):
AGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAAATACCTCAACG
TGTCCTG
Found at i:102977481 original size:76 final size:74
Alignment explanation
Indices: 102977200--102978315 Score: 532
Period size: 71 Copynumber: 15.4 Consensus size: 74
102977190 TGTGATCTGA
102977200 AGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTTTTGAAAGACAGAAATTGAAAATACCT
1 AGCTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTTTTTGAAA-ACAGAAATTGAAAATACCT
102977265 CAGCATGTGAACC-G
63 CAGCATGT---CCTG
* * *
102977279 AGGCTCAACTCACCTCTCACAATATAAGTTGA--TTTTTTGAAAACAAAAATTGAAAATACCTCA
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
* * *
102977342 ACGTGTCTTG
65 GCATGTCCTG
** * *
102977352 AGGCTCAAC-CATTTCTCGCAATATGAGTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCA
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
102977413 GCATGTCCTG
65 GCATGTCCTG
* * *
102977423 AGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATTGAAATTACCTC
1 AGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTTGAAAACAGAAATTGAAAATACCTC
*
102977488 AGCGTGTCCTG
64 AGCATGTCCTG
* **
102977499 AGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTT-AAAAGGCAGAAATTGAAAA-ACGGA
1 AGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAA--CAGAAATTGAAAATAC-CT
* * **
102977562 AATTGAAAATACCTCG
63 CA--GCATGT-CCT-G
* * * * * * ** ******
102977578 -GCGTGTGACCTAAGGCTCAAC-C-CGC-CTCTTGCAATACGAGTTGATTT-TTTTTTGAAAGAC
1 AGC---T---C-AA--CTCACCTCTCGCAAT-ATG-AGT-TGATTTTTTTTGAAAACAG-AA---
102977638 AGAAATTGAAAATACCTCAGCATGTGAACC-G
50 ----ATTGAAAATACCTCAGCATGT---CCTG
*
102977669 AGACTCAACTCACCTCTCGCAATATAAGTTGA--TTTTTTG-AAA-A-AAA-T----ATA-CTCA
1 AG-CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
*
102977723 --ATGT-TTG
65 GCATGTCCTG
** * *
102977730 AGGC-CAACTCATTTCT-GC-ATAT--GTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCA
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
102977787 --AGTGT-CTG
65 GCA-TGTCCTG
* * *
102977795 AGGCGCAAC-CA--TTTCGCAATAT-AGTTGA-----ATTGAAAA-A-AAA-TG--AATACCTCA
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
* *
102977846 GCGTGTCCCG
65 GCATGTCCTG
* * * *
102977856 AGGCTCAACTCACTTCTCGCAATATGAGTTGA----ATTTG-AAATAGAAATTGAAATTACCTCA
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
* * *
102977916 ACGTGTCTTG
65 GCATGTCCTG
** * * *
102977926 AGGCTCAACTCATTTCTCGCAATATGAG-TGA---ATTTTGAAAACAAAAATTGAAATTACCTCA
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
* *
102977987 GCGTGTCCCG
65 GCATGTCCTG
* * *
102977997 AGGCTCAACTCACTTCTCGCAATATGAGTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCA
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
* *
102978059 GCGTGTCCCG
65 GCATGTCCTG
* *
102978069 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAAAAATTAAAAATACCTC
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA-ACAGAAATTGAAAATACCTC
*
102978133 AGCATGTCTTG
64 AGCATGTCCTG
* ** *
102978144 AGGCTCAACTCACTTCTCGCAATATGAGTT-A---AATTTGAAAACAGAAATTGAAATTACCTCA
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCA
*
102978205 GCGTGTCC-G
65 GCATGTCCTG
* *
102978214 AGCTCGACTCACC-CTCGCAATATGAGTTGA--TTTTTTGAAAGACA-AAAATGAAAATACCTCA
1 AGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA-ACAGAAATTGAAAATACCTCA
*
102978275 GCATGTCTTG
65 GCATGTCCTG
*
102978285 AGGCTCAACTCA-TTCTCGCAATATGAGTTGA
1 A-GCTCAACTCACCTCTCGCAATATGAGTTGA
102978316 ATTTGAAATA
Statistics
Matches: 834, Mismatches: 118, Indels: 177
0.74 0.10 0.16
Matches are distributed among these distances:
55 5 0.01
56 8 0.01
57 1 0.00
58 7 0.01
59 11 0.01
60 13 0.02
61 15 0.02
62 6 0.01
63 5 0.01
64 28 0.03
65 24 0.03
66 17 0.02
67 6 0.01
68 17 0.02
69 14 0.02
70 83 0.10
71 139 0.17
72 126 0.15
73 13 0.02
74 18 0.02
75 91 0.11
76 77 0.09
77 2 0.00
78 5 0.01
79 4 0.00
80 28 0.03
81 1 0.00
82 4 0.00
84 9 0.01
85 11 0.01
86 11 0.01
87 14 0.02
90 1 0.00
91 4 0.00
92 1 0.00
93 13 0.02
94 2 0.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (74 bp):
AGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAG
CATGTCCTG
Found at i:102977494 original size:147 final size:142
Alignment explanation
Indices: 102977195--102978323 Score: 959
Period size: 147 Copynumber: 7.8 Consensus size: 142
102977185 CAGTGTGTGA
* *
102977195 TCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTTTTGAAAGACAGAAATTGAAAA
1 TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----ATTTTGAAA-ACA-AAATTGAAAA
* * * *
102977260 TACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCACAATATAAGTTGATTTTTTGAAAACA
59 TACCTCAGCATGT---CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-ATTTTGAAAACA
* * *
102977324 AAAATTGAAAATACCTCAACGTG
120 GAAATTGAAATTACCTCAGCGTG
** *
102977347 TCTTGAGGCTCAAC-CATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCT
1 TC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACA-AAATTGAAAATACCT
* * * *
102977411 CAGCATGTCCTGA-GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTTTGACAACAGAAA
64 CAGCATGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-----ATTTTGAAAACAGAAA
102977475 TTGAAATTACCTCAGCGTG
124 TTGAAATTACCTCAGCGTG
102977494 TCCTGA-GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTAAAAGGCAGAAATTGAAAAA
1 T-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA-----TT------------TTG-AAAA
* * * * * * * * *
102977558 CGGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACCCGCCTCTTGCAATACGAGTTGAT
47 C-AAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-
* *
102977623 TTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTG
108 ---ATTTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTG
* * * * *
102977664 AACCGAGACTCAACTCACCTCTCGCAATATAAGTTGATTTTTTG-AAA-AAAA-T----ATA-CT
1 -TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAAACAAAATTGAAAATACCT
* *
102977721 CA--ATGT-TTGAGGC-CAACTCATTTCT-GC-ATAT--GTTGAATTTTGAAAACAGAAATTGAA
64 CAGCATGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAA
*
102977778 ATTACCTCA-AGTG
129 ATTACCTCAGCGTG
* *
102977791 TCTGAGGCGCAAC-CA--TTTCGCAATAT-AGTTGAA--TTGAAAA-AAAA-TG--AATACCTCA
1 TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAAAATTGAAAATACCTCA
* * *
102977846 GCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAA-TTTG-AAATAGAAATTGAAAT
66 GCATGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAT
*
102977909 TACCTCAACGTG
131 TACCTCAGCGTG
** *
102977921 TCTTGAGGCTCAACTCATTTCTCGCAATATGAG-TGAATTTTGAAAACAAAAATTGAAATTACCT
1 TC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAC-AAAATTGAAAATACCT
* *
102977985 CAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAA
64 CAGCATGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAA
102978050 ATTACCTCAGCGTG
129 ATTACCTCAGCGTG
* * *
102978064 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTAAAAATA
1 T-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAA-AC-AAAATTGAAAATA
* *
102978129 CCTCAGCATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTT-AAATTTGAAAACAGAAATT
61 CCTCAGCATGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
102978193 GAAATTACCTCAGCGTG
126 GAAATTACCTCAGCGTG
* * * *
102978210 TCCGA-GCTCGACTCACC-CTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATGAAAATACCT
1 TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAA-ACAAAATTGAAAATACCT
*
102978273 CAGCATGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAA-TTTGAAA
64 CAGCATGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAA
102978324 TAAAACATCA
Statistics
Matches: 836, Mismatches: 72, Indels: 150
0.79 0.07 0.14
Matches are distributed among these distances:
119 3 0.00
120 8 0.01
122 9 0.01
123 14 0.02
125 5 0.01
126 14 0.02
127 14 0.02
128 2 0.00
129 26 0.03
130 29 0.03
131 24 0.03
132 2 0.00
134 14 0.02
135 7 0.01
136 7 0.01
137 3 0.00
138 6 0.01
139 10 0.01
140 29 0.03
141 91 0.11
142 17 0.02
143 103 0.12
144 17 0.02
145 7 0.01
146 80 0.10
147 121 0.14
148 1 0.00
150 1 0.00
151 3 0.00
152 24 0.03
153 13 0.02
155 3 0.00
164 3 0.00
165 25 0.03
167 18 0.02
168 49 0.06
170 6 0.01
171 28 0.03
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (142 bp):
TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAAAATTGAAAATACCTCA
GCATGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAT
TACCTCAGCGTG
Found at i:102977627 original size:92 final size:90
Alignment explanation
Indices: 102977471--102977649 Score: 234
Period size: 92 Copynumber: 2.0 Consensus size: 90
102977461 TTTGACAACA
* * * *
102977471 GAAATTGAAATTACCTCAGCGTGTCCTGAGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTAAGCTCAACCCACCTCTCGCAATACGAGTTGATATTTT
*
102977535 TTTAAAAGGCAGAAATTGAAAAACG
66 TTTAAAAGACAGAAATTGAAAAACG
* * * *
102977560 GAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACCCGCCTCTTGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTAA-GCTCAACCCACCTCTCGCAATACGAGTTGATAT
*
102977625 TTTTTTGAAAGACAGAAATTGAAAA
63 TTTTTTAAAAGACAGAAATTGAAAA
102977650 TACCTCAGCA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
89 22 0.29
91 4 0.05
92 26 0.34
93 24 0.32
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (90 bp):
GAAATTGAAAATACCTCAGCGTGTCCTAAGCTCAACCCACCTCTCGCAATACGAGTTGATATTTT
TTTAAAAGACAGAAATTGAAAAACG
Found at i:102977685 original size:79 final size:79
Alignment explanation
Indices: 102977550--102977706 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
102977540 AAGGCAGAAA
* * * * * *
102977550 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACCCGCCTCTTGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGACCTAAGACTCAACCCACCTCTCGCAATAC
*
102977615 GAGTTGATTTTTTT
66 AAGTTGATTTTTTT
* * *
102977629 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGACTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTG-ACCTAAGACTCAACCCACCTCTCGCAATA
*
102977693 TAAGTTGATTTTTT
65 CAAGTTGATTTTTT
102977707 GAAAAAAATA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
79 63 0.95
80 3 0.05
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (79 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGACCTAAGACTCAACCCACCTCTCGCAATAC
AAGTTGATTTTTTT
Found at i:102977984 original size:141 final size:142
Alignment explanation
Indices: 102977729--102978323 Score: 750
Period size: 141 Copynumber: 4.3 Consensus size: 142
102977719 CTCAATGTTT
*
102977729 GAGGC-CAACTCATTTCT-GC-ATAT--GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA-
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAA-TTTGAAAACAGAAATTGAAATTACCTCAAC
* * *
102977788 GTGTCTGAGGCGCAAC-CA-TTTCGCAATAT-AGTTGA-A--TTG-AA-A-AAAAATG--AATAC
65 GTGTCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATATTTTGAAAGACAAAAATGAAAATAC
*
102977842 CTCAGCGTGTCCC
130 CTCAGCATGTCCC
*
102977855 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTG-AAATAGAAATTGAAATTACCTCAACG
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTGAAAACAGAAATTGAAATTACCTCAACG
* * *
102977919 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG-TGA-ATTTTGAAA-ACAAAAATTGAAATT
66 TGTC-CGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATATTTTGAAAGACAAAAA-TGAAAAT
*
102977981 ACCTCAGCGTGTCCC
128 ACCTCAGCATGTCCC
*
102977996 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAA-TTTGAAAACAGAAATTGAAATTACCTCAAC
* *
102978061 GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTAAAA
65 GTGT-CCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA-TATTTTGAAAGACAAAAA-TGAAA
**
102978126 ATACCTCAGCATGTCTT
126 ATACCTCAGCATGTCCC
* *
102978143 GAGGCTCAACTCACTTCTCGCAATATGAGTTAAATTTGAAAACAGAAATTGAAATTACCTCAGCG
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTGAAAACAGAAATTGAAATTACCTCAACG
* * *
102978208 TGTCCGA-GCTCGACTCACCCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATGAAAATACC
66 TGTCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATATTTTGAAAGACAAAAATGAAAATACC
**
102978272 TCAGCATGTCTT
131 TCAGCATGTCCC
102978284 GAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATTTGAAA
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTGAAA
102978324 TAAAACATCA
Statistics
Matches: 423, Mismatches: 21, Indels: 36
0.88 0.04 0.08
Matches are distributed among these distances:
126 5 0.01
127 11 0.03
128 2 0.00
129 27 0.06
130 9 0.02
131 16 0.04
132 2 0.00
134 14 0.03
135 2 0.00
136 3 0.01
137 3 0.01
138 5 0.01
139 2 0.00
140 26 0.06
141 85 0.20
142 22 0.05
143 72 0.17
144 13 0.03
145 4 0.01
146 42 0.10
147 58 0.14
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (142 bp):
GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATATTTTGAAAGACAAAAATGAAAATACC
TCAGCATGTCCC
Found at i:102978061 original size:72 final size:72
Alignment explanation
Indices: 102977729--102978323 Score: 706
Period size: 72 Copynumber: 8.6 Consensus size: 72
102977719 CTCAATGTTT
* *
102977729 GAGGC-CAACTCATTTCT-GC-ATAT--GTTGAATTTTGAAAACAGAAATTGAAATTACCTCA-A
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC
*
102977788 GTGT-CT
66 GTGTCCC
*
102977794 GAGGCGCAAC-CA-TT-TCGCAATAT-AGTTGAA--TTGAAAA-A-AAA-TG-AA-TACCTCAGC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC
102977848 GTGTCCC
66 GTGTCCC
* *
102977855 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAA-TTTG-AAATAGAAATTGAAATTACCTCAAC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC
**
102977918 GTGTCTT
66 GTGTCCC
* *
102977925 GAGGCTCAACTCATTTCTCGCAATATGAG-TGAATTTTGAAAACAAAAATTGAAATTACCTCAGC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC
102977989 GTGTCCC
66 GTGTCCC
102977996 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC
102978061 GTGTCCC
66 GTGTCCC
* * * * *
102978068 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTAAAAATACCTC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAATTACCTC
* **
102978133 AGCATGTCTT
63 AGCGTGTCCC
*
102978143 GAGGCTCAACTCACTTCTCGCAATATGAGTT-AAATTTGAAAACAGAAATTGAAATTACCTCAGC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC
102978207 GTGT-CC
66 GTGTCCC
* * * * *
102978213 GA-GCTCGACTCAC-CCTCGCAATATGAGTTGATTTTTTGAAAGACA-AAAATGAAAATACCTCA
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGA-ATTTTGAAA-ACAGAAATTGAAATTACCTCA
* **
102978275 GCATGTCTT
64 GCGTGTCCC
102978284 GAGGCTCAACTCA-TTCTCGCAATATGAGTTGAA-TTTGAAA
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAA
102978324 TAAAACATCA
Statistics
Matches: 459, Mismatches: 43, Indels: 51
0.83 0.08 0.09
Matches are distributed among these distances:
59 7 0.02
60 6 0.01
61 12 0.03
62 5 0.01
63 4 0.01
64 20 0.04
65 21 0.05
66 14 0.03
67 3 0.01
68 17 0.04
69 17 0.04
70 81 0.18
71 83 0.18
72 106 0.23
74 9 0.02
75 54 0.12
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (72 bp):
GAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC
GTGTCCC
Found at i:102986637 original size:12 final size:12
Alignment explanation
Indices: 102986617--102986652 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
102986607 TGGGATATGT
*
102986617 AATGTATGAATG
1 AATGCATGAATG
102986629 AATGCATGAATG
1 AATGCATGAATG
102986641 AATGCATGAATG
1 AATGCATGAATG
102986653 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:102988659 original size:39 final size:39
Alignment explanation
Indices: 102988573--102988659 Score: 104
Period size: 39 Copynumber: 2.2 Consensus size: 39
102988563 TATTTAAAAT
* * * *
102988573 ATATATATGTATATAATAGTATTTAAGAATATATACATA
1 ATATATATATATATAATAGCATTAAAAAATATATACATA
* *
102988612 AGAAATATATA-ACTAATAGCATTAAAAAATATATACATA
1 ATATATATATATA-TAATAGCATTAAAAAATATATACATA
102988651 ATATATATA
1 ATATATATA
102988660 AAATACCTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 1 0.03
39 38 0.97
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.36
Consensus pattern (39 bp):
ATATATATATATATAATAGCATTAAAAAATATATACATA
Found at i:102988661 original size:24 final size:24
Alignment explanation
Indices: 102988603--102988662 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
102988593 ATTTAAGAAT
* *
102988603 ATATACATAAGAAATATATAACTA
1 ATATATATAAAAAATATATAACTA
*
102988627 ATAGCAT-TAAAAAATATAT-ACATA
1 ATA-TATATAAAAAATATATAAC-TA
102988651 ATATATATAAAA
1 ATATATATAAAA
102988663 TACCTAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
23 4 0.14
24 24 0.83
25 1 0.03
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.30
Consensus pattern (24 bp):
ATATATATAAAAAATATATAACTA
Found at i:102989209 original size:18 final size:18
Alignment explanation
Indices: 102989151--102989210 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
102989141 AGGGTTTCTT
*
102989151 TGTTTTT-TTTTGGGTTA
1 TGTTTTTCTTTTTGGTTA
** *
102989168 TGTTTTTCTTTTTTCTTT
1 TGTTTTTCTTTTTGGTTA
*
102989186 TTTTTTTCTTTTTGGTTA
1 TGTTTTTCTTTTTGGTTA
*
102989204 GGTTTTT
1 TGTTTTT
102989211 TTGGGGGGGG
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
17 7 0.22
18 25 0.78
ACGTcount: A:0.03, C:0.05, G:0.15, T:0.77
Consensus pattern (18 bp):
TGTTTTTCTTTTTGGTTA
Found at i:102998448 original size:131 final size:128
Alignment explanation
Indices: 102997961--102998449 Score: 405
Period size: 132 Copynumber: 3.7 Consensus size: 128
102997951 TTGCCTCACC
* * * * * *
102997961 TTAGAAAACACGAGTGCAATT-TCGAA-GAGATATTCGATTATTTTGAACAAACGGGAGACTGCA
1 TTAGAAAACATGAGTGAAATTCT-GAAGGA-ATATCCGATTATTTTGAACAAACGCGAAATTGCA
* * * *
102998024 ACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACACCGGACATTTCTTTCATTTTAAAGG
64 ACCCAGCACGATAGGGCACGATT-CCCGAATTT-CAAACACC-GAGATTACTTT-GTTTTAAAGG
*
102998089 GTTT
125 ATTT
* * * * *
102998093 TTAGAAAACGTAAGTGAAATTCTGAAGGAATCTCCGATTGTTTTGAACAAA--CGAAAATGCGTA
1 TTAGAAAACATGAGTGAAATTCTGAAGGAATATCCGATTATTTTGAACAAACGCGAAATTGC--A
* ** ** * * **
102998156 ACCCAGCACGATAGGGCACGATTCTCGAATCGCCAAACATCTAAGATCACCTTCGTTTTGGGAGG
64 ACCCAGCACGATAGGGCACGATTCCCGAAT-TTCAAACA-CCGAGATTA-CTTTGTTTT-AAAGG
*
102998221 TTTT
125 ATTT
** * * * **
102998225 TTA-ATAAACATGAGTGAAAACCTAAAGGAATATCCGATTGTTTTGAACAAACGAGAAATCACAA
1 TTAGA-AAACATGAGTGAAATTCTGAAGGAATATCCGATTATTTTGAACAAACGCGAAATTGCAA
* * *
102998289 CCCAGCACGATAGGGCATGACTCCCGAATTATCAAACACCGAGTATTGCATTTGTTTTAAAGGAT
65 CCCAGCACGATAGGGCACGATTCCCGAATT-TCAAACACCGAG-ATTAC-TTTGTTTTAAAGGAT
102998354 TT
127 TT
* * * * *
102998356 TTAGAAGACATGAGTGAAATTTTGGAGGGATATTCGATTATTTTG-ACAAACGCGAAATTGCAAC
1 TTAGAAAACATGAGTGAAATTCTGAAGGAATATCCGATTATTTTGAACAAACGCGAAATTGCAAC
*
102998420 CCAGCACGTTAGGGCACGATTCCGCGAATT
66 CCAGCACGATAGGGCACGATTCC-CGAATT
102998450 GCCAAAATAT
Statistics
Matches: 279, Mismatches: 62, Indels: 33
0.75 0.17 0.09
Matches are distributed among these distances:
130 42 0.15
131 70 0.25
132 159 0.57
133 3 0.01
134 5 0.02
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (128 bp):
TTAGAAAACATGAGTGAAATTCTGAAGGAATATCCGATTATTTTGAACAAACGCGAAATTGCAAC
CCAGCACGATAGGGCACGATTCCCGAATTTCAAACACCGAGATTACTTTGTTTTAAAGGATTT
Found at i:102998491 original size:263 final size:263
Alignment explanation
Indices: 102997990--102998491 Score: 565
Period size: 263 Copynumber: 1.9 Consensus size: 263
102997980 TTTCGAAGAG
* * * * *
102997990 ATATTCGATTATTTTGAACAAACGGGAGACTGCAACCCAGCACGATAGGGCACTATTCCCCGAAT
1 ATATCCGATTATTTTGAACAAACGAGAAACTACAACCCAGCACGATAGGGCACTACTCCCCGAAT
* * *
102998055 TTCCAAACACCGGACATTTCTTTCATTTTAAAGGGTTTTTAGAAAACGTAAGTGAAATTCTGAAG
66 TTCCAAACACCGGACATTGCTTTCATTTTAAAGGATTTTTAGAAAACATAAGTGAAATTCTGAAG
* * *
102998120 GAATCTCCGATTGTTTTGAACAAACGAAAATGCGTAACCCAGCACGATAGGGCACGATTCTCGAA
131 GAATATCCGATTATTTTGAACAAACGAAAATGCG-AACCCAGCACGATAGGGCACGATTCGCGAA
** **
102998185 TCGCCAAACATCTAAGATCACCTTCGTTTTGGGAGGTTTTTTAATAAACATGAGTGAAAACCTAA
195 TCGCCAAACATCTAAGATCACCTTCGTTTTGAAAGAATTTTTAATAAACATGAGTGAAAACCTAA
102998250 AGGA
260 AGGA
*
102998254 ATATCCGATTGTTTTGAACAAACGAGAAA-TCACAACCCAGCACGATAGGGCA-TGACT-CCCGA
1 ATATCCGATTATTTTGAACAAACGAGAAACT-ACAACCCAGCACGATAGGGCACT-ACTCCCCGA
* * * * *
102998316 ATTAT-CAAACACC-GAGTATTGCATTT-GTTTTAAAGGATTTTTAGAAGACATGAGTGAAATTT
64 ATT-TCCAAACACCGGA-CATTGC-TTTCATTTTAAAGGATTTTTAGAAAACATAAGTGAAATTC
* * * * *
102998378 TGGAGGGATATTCGATTATTTTG-ACAAACGCGAAATTGC-AACCCAGCACGTTAGGGCACGATT
126 TGAAGGAATATCCGATTATTTTGAACAAA--CGAAAATGCGAACCCAGCACGATAGGGCACGATT
* * * *
102998441 CCGCGAATTGCCAAA-ATATCAAGTCTCATCTTCGTTTT-AAAGAATTTTTAA
189 -CGCGAATCGCCAAACATCT-AAG-ATCACCTTCGTTTTGAAAGAATTTTTAA
102998492 ATGAATAATT
Statistics
Matches: 198, Mismatches: 30, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
262 33 0.17
263 94 0.47
264 71 0.36
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (263 bp):
ATATCCGATTATTTTGAACAAACGAGAAACTACAACCCAGCACGATAGGGCACTACTCCCCGAAT
TTCCAAACACCGGACATTGCTTTCATTTTAAAGGATTTTTAGAAAACATAAGTGAAATTCTGAAG
GAATATCCGATTATTTTGAACAAACGAAAATGCGAACCCAGCACGATAGGGCACGATTCGCGAAT
CGCCAAACATCTAAGATCACCTTCGTTTTGAAAGAATTTTTAATAAACATGAGTGAAAACCTAAA
GGA
Found at i:103001092 original size:26 final size:26
Alignment explanation
Indices: 103001056--103001138 Score: 148
Period size: 26 Copynumber: 3.2 Consensus size: 26
103001046 TGGGTTTTAT
103001056 GTTTAAGTTTGGGCTATTGGGTTTGG
1 GTTTAAGTTTGGGCTATTGGGTTTGG
103001082 GTTTAAGTTTGGGCTATTGGGTTTGG
1 GTTTAAGTTTGGGCTATTGGGTTTGG
*
103001108 GTTTAAGTTTGGGCCATTGGGTTTGG
1 GTTTAAGTTTGGGCTATTGGGTTTGG
*
103001134 TTTTA
1 GTTTA
103001139 GGATATCTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.12, C:0.05, G:0.36, T:0.47
Consensus pattern (26 bp):
GTTTAAGTTTGGGCTATTGGGTTTGG
Found at i:103006602 original size:32 final size:32
Alignment explanation
Indices: 103006566--103006627 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
103006556 TTTAATTTGA
*
103006566 TTAATTTTAATAT-TTATATTTTTTTAAATTAG
1 TTAATTTTAATATATT-TATTTTTTAAAATTAG
103006598 TTAATTTTAATATATTTATTTTTTAAAATT
1 TTAATTTTAATATATTTATTTTTTAAAATT
103006628 TTTAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 26 0.93
33 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (32 bp):
TTAATTTTAATATATTTATTTTTTAAAATTAG
Found at i:103009824 original size:21 final size:21
Alignment explanation
Indices: 103009790--103009829 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
103009780 CCATTAAATG
*
103009790 ACATTTATAATAATAATAATA
1 ACATTAATAATAATAATAATA
*
103009811 ACATTAATAGTAATAATAA
1 ACATTAATAATAATAATAA
103009830 GTGAAAGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
ACATTAATAATAATAATAATA
Found at i:103010612 original size:21 final size:21
Alignment explanation
Indices: 103010569--103010618 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
103010559 TTAAGTCATG
*
103010569 AATTTTTTTAAAAATAGATTA
1 AATTTTTTTAAAAATAGAATA
103010590 AATTTTTTTCAAAAATA-AATA
1 AATTTTTTT-AAAAATAGAATA
*
103010611 AATATTTT
1 AATTTTTT
103010619 AAATTAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 19 0.73
22 7 0.27
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
AATTTTTTTAAAAATAGAATA
Found at i:103010618 original size:22 final size:23
Alignment explanation
Indices: 103010570--103010618 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
103010560 TAAGTCATGA
* *
103010570 ATTTTTTTAAAAATAGATTAAAT
1 ATTTTTTCAAAAATAGAATAAAT
103010593 -TTTTTTCAAAAATA-AATAAAT
1 ATTTTTTCAAAAATAGAATAAAT
103010614 ATTTT
1 ATTTT
103010619 AAATTAACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
ATTTTTTCAAAAATAGAATAAAT
Found at i:103010997 original size:18 final size:19
Alignment explanation
Indices: 103010957--103011003 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
103010947 AATTAATAAT
*
103010957 TATATTTATTTTTTATGTAA
1 TATATTTA-TGTTTATGTAA
*
103010977 TATATTTATGTTTA-GTGA
1 TATATTTATGTTTATGTAA
*
103010995 TATAATTAT
1 TATATTTAT
103011004 AATTATATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 11 0.46
19 5 0.21
20 8 0.33
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.60
Consensus pattern (19 bp):
TATATTTATGTTTATGTAA
Found at i:103012901 original size:55 final size:55
Alignment explanation
Indices: 103012817--103012928 Score: 224
Period size: 55 Copynumber: 2.0 Consensus size: 55
103012807 TCTATATTGG
103012817 AACCCACCCATTGTTTGAAAAGTCAAAAAGGGTGGGCACCGAAAGTAGAAAGTAA
1 AACCCACCCATTGTTTGAAAAGTCAAAAAGGGTGGGCACCGAAAGTAGAAAGTAA
103012872 AACCCACCCATTGTTTGAAAAGTCAAAAAGGGTGGGCACCGAAAGTAGAAAGTAA
1 AACCCACCCATTGTTTGAAAAGTCAAAAAGGGTGGGCACCGAAAGTAGAAAGTAA
103012927 AA
1 AA
103012929 TTGGTTGGCA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (55 bp):
AACCCACCCATTGTTTGAAAAGTCAAAAAGGGTGGGCACCGAAAGTAGAAAGTAA
Found at i:103013472 original size:18 final size:18
Alignment explanation
Indices: 103013445--103013537 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
103013435 TACGACCGTT
103013445 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
103013463 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
103013481 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
103013499 TACGGCACTATTTACGTA
1 TACGGTACTATTCACGTA
*
103013517 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
103013535 TAC
1 TAC
103013538 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:103013492 original size:36 final size:36
Alignment explanation
Indices: 103013445--103013537 Score: 168
Period size: 36 Copynumber: 2.6 Consensus size: 36
103013435 TACGACCGTT
103013445 TACGGTACTATTCACGTATACGGCACTATTCACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
*
103013481 TACGGTACTATTCACGTATACGGCACTATTTACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
*
103013517 TACGGTACTGTTCACGTATAC
1 TACGGTACTATTCACGTATAC
103013538 AGTAGTTGGG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 55 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACGGCACTATTCACGTA
Found at i:103020199 original size:50 final size:50
Alignment explanation
Indices: 103020124--103020223 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
103020114 GTTGTACGGT
103020124 TATGAGCTAACGAAAATGTTTGTGTAGGCTTGATGCGATTTGGAAGATCA
1 TATGAGCTAACGAAAATGTTTGTGTAGGCTTGATGCGATTTGGAAGATCA
103020174 TATGAGCTAACGAAAATGTTTGTGTAGGCTTGATGCGATTTGGAAGATCA
1 TATGAGCTAACGAAAATGTTTGTGTAGGCTTGATGCGATTTGGAAGATCA
103020224 AAAGCTTAGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.32
Consensus pattern (50 bp):
TATGAGCTAACGAAAATGTTTGTGTAGGCTTGATGCGATTTGGAAGATCA
Found at i:103021115 original size:18 final size:17
Alignment explanation
Indices: 103021094--103021134 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 17
103021084 AAAAAAAATG
103021094 AAAATACTAAAAACTGAAAA
1 AAAATA-TAAAAA-TG-AAA
103021114 AAAATATAAAAATGAAA
1 AAAATATAAAAATGAAA
103021131 AAAA
1 AAAA
103021135 GATTAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.33
18 2 0.10
19 6 0.29
20 6 0.29
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.15
Consensus pattern (17 bp):
AAAATATAAAAATGAAA
Found at i:103021144 original size:19 final size:19
Alignment explanation
Indices: 103021094--103021134 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
103021084 AAAAAAAATG
103021094 AAAATACTAAAAACTGAAAA
1 AAAATA-TAAAAACTGAAAA
103021114 AAAATATAAAAA-TGAAAA
1 AAAATATAAAAACTGAAAA
103021132 AAA
1 AAA
103021135 GATTAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 9 0.43
19 6 0.29
20 6 0.29
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.15
Consensus pattern (19 bp):
AAAATATAAAAACTGAAAA
Found at i:103021144 original size:20 final size:18
Alignment explanation
Indices: 103021102--103021146 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 18
103021092 TGAAAATACT
*
103021102 AAAAACTGAAAAAAAATAT
1 AAAAA-TGAAAAAAAATAG
103021121 AAAAATGAAAAAAAGATTAG
1 AAAAATGAAAAAAA-A-TAG
103021141 AAAAAT
1 AAAAAT
103021147 TATTATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 6 0.26
20 8 0.35
ACGTcount: A:0.73, C:0.02, G:0.09, T:0.16
Consensus pattern (18 bp):
AAAAATGAAAAAAAATAG
Found at i:103021274 original size:12 final size:11
Alignment explanation
Indices: 103021251--103021385 Score: 58
Period size: 10 Copynumber: 13.1 Consensus size: 11
103021241 AATTTTAAAA
103021251 TATAAAAA-AT
1 TATAAAAATAT
103021261 TATTAAAAATAT
1 TA-TAAAAATAT
103021273 TATAAAAATA-
1 TATAAAAATAT
* * *
103021283 TAGAAAAGT-G
1 TATAAAAATAT
*
103021293 CA-AAAAA-AT
1 TATAAAAATAT
103021302 TATAAAAA-AT
1 TATAAAAATAT
*
103021312 TATATAAA-AT
1 TATAAAAATAT
*
103021322 TACAAAAA-AT
1 TATAAAAATAT
103021332 TATTAAAAAT-T
1 TA-TAAAAATAT
* *
103021343 T-TCAAAATAA
1 TATAAAAATAT
* *
103021353 TAGAAAATTAT
1 TATAAAAATAT
* * *
103021364 AATAAAGATAA
1 TATAAAAATAT
103021375 T-TAAAAATAT
1 TATAAAAATAT
103021385 T
1 T
103021386 TACAATTTTA
Statistics
Matches: 92, Mismatches: 24, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
9 11 0.12
10 45 0.49
11 32 0.35
12 4 0.04
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (11 bp):
TATAAAAATAT
Found at i:103021320 original size:20 final size:19
Alignment explanation
Indices: 103021297--103021339 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
103021287 AAAGTGCAAA
*
103021297 AAAATTATAAAAAATTATAT
1 AAAATTACAAAAAATTAT-T
103021317 AAAATTACAAAAAATTATT
1 AAAATTACAAAAAATTATT
103021336 AAAA
1 AAAA
103021340 ATTTTCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATTACAAAAAATTATT
Found at i:103021342 original size:30 final size:29
Alignment explanation
Indices: 103021239--103021341 Score: 95
Period size: 30 Copynumber: 3.5 Consensus size: 29
103021229 ATATATATGG
*
103021239 AAAATT-TT-AAAATATAAAAAATTATTAA
1 AAAATTATTAAAAATATAAAAAATTA-CAA
* * *
103021267 AAATATTA-TAAAAATATAGAAAAGTGCAAA
1 AAA-ATTATTAAAAATATAAAAAATTAC-AA
* *
103021297 AAAATTATAAAAAATTATATAAAATTACAA
1 AAAATTATTAAAAA-TATAAAAAATTACAA
103021327 AAAATTATTAAAAAT
1 AAAATTATTAAAAAT
103021342 TTTCAAAATA
Statistics
Matches: 60, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
28 3 0.05
29 9 0.15
30 38 0.63
31 10 0.17
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (29 bp):
AAAATTATTAAAAATATAAAAAATTACAA
Found at i:103021616 original size:17 final size:17
Alignment explanation
Indices: 103021594--103021665 Score: 63
Period size: 17 Copynumber: 3.9 Consensus size: 17
103021584 TTTTAGTTTG
103021594 TTTTATAATTTTTTAAT
1 TTTTATAATTTTTTAAT
* *
103021611 TTTTATATTATTTTGTAAA
1 TTTTATA--ATTTTTTAAT
* *
103021630 TTTTATTATTTTTAAAT
1 TTTTATAATTTTTTAAT
103021647 ATTTTACATAATTTTTTAA
1 -TTTT--ATAATTTTTTAA
103021666 AAAAAATTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
17 14 0.33
18 4 0.10
19 14 0.33
20 10 0.24
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (17 bp):
TTTTATAATTTTTTAAT
Found at i:103021631 original size:28 final size:28
Alignment explanation
Indices: 103021574--103021665 Score: 84
Period size: 28 Copynumber: 3.3 Consensus size: 28
103021564 GAAAAAAATG
*
103021574 TTTTTTATATTTTTAGT-TTGTTTTAT-AA
1 TTTTTTA-ATTTTTA-TATTATTTTATAAA
*
103021602 TTTTTTAATTTTTATATTATTTTGTAAA
1 TTTTTTAATTTTTATATTATTTTATAAA
* *
103021630 TTTTATT-ATTTTTA-AATATTTTACATAA
1 TTTT-TTAATTTTTATATTATTTTATA-AA
103021658 TTTTTTAA
1 TTTTTTAA
103021666 AAAAAATTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
26 1 0.02
27 24 0.44
28 27 0.50
29 2 0.04
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (28 bp):
TTTTTTAATTTTTATATTATTTTATAAA
Found at i:103021633 original size:20 final size:19
Alignment explanation
Indices: 103021601--103021662 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
103021591 TTGTTTTATA
*
103021601 ATTTTTTAATTTTTATATT
1 ATTTTTAAATTTTTATATT
103021620 ATTTTGTAAA--TTT-TATT
1 ATTTT-TAAATTTTTATATT
* *
103021637 ATTTTTAAATATTTTACATA
1 ATTTTTAAAT-TTTTATATT
103021657 ATTTTT
1 ATTTTT
103021663 TAAAAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
16 4 0.11
17 9 0.26
18 3 0.09
19 8 0.23
20 11 0.31
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
ATTTTTAAATTTTTATATT
Found at i:103027865 original size:16 final size:17
Alignment explanation
Indices: 103027844--103027875 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
103027834 CATATGAAAA
103027844 GTAAAAAT-AATAATTC
1 GTAAAAATAAATAATTC
103027860 GTAAAAATAAATAATT
1 GTAAAAATAAATAATT
103027876 TAGGAAGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.31
Consensus pattern (17 bp):
GTAAAAATAAATAATTC
Found at i:103042019 original size:205 final size:205
Alignment explanation
Indices: 103041652--103042163 Score: 758
Period size: 205 Copynumber: 2.5 Consensus size: 205
103041642 GTAGGCCGCA
* *
103041652 GCATAGCAGATCTCACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGGCATCCTTGT
1 GCATAGCAGATCTCACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGACATCATTGT
* * * *
103041717 GCTTACAATGAGCGAATCGAAGACAGAACTGATATGGCTTTCACGTGTTTACGATGAAGCAAATC
66 GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* * * *
103041782 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACG
131 TAAGATGATTTGGAAACTCTGTATTATCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACG
103041847 GGGAGCAGAT
196 GGGAGCAGAT
* *
103041857 GCATAGTAGATCTCACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGGTTTGACATCATTGT
1 GCATAGCAGATCTCACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGACATCATTGT
*
103041922 GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTATGATGAAGCAAATC
66 GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* *
103041987 TAAGATGATTTGGAAACTTTGTATTATCAGAGAACAAATCGAAGTCTAGCATCTCCACTTTGACG
131 TAAGATGATTTGGAAACTCTGTATTATCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACG
103042052 GGGAGCAGAT
196 GGGAGCAGAT
* * * * **
103042062 ACATAGCAGATCTCACATTCAGATAATTT-CACTGAAGCAAGATCCAAGATGATTTGACATTTTT
1 GCATAGCAGATCTCACCTTCAGAT-GTTTATACTGAAG-AAGATCCAAGATGATTTGACATCATT
* * * *
103042126 GTGTTTACAAGGAACAAATC-AAGGACATAGCAGATTTG
64 GTGCTTACAAGGAGCGAATCGAA-GACATAGCTGATTTG
103042164 ACTCTCAGAT
Statistics
Matches: 277, Mismatches: 27, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
205 220 0.79
206 57 0.21
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (205 bp):
GCATAGCAGATCTCACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGACATCATTGT
GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
TAAGATGATTTGGAAACTCTGTATTATCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACG
GGGAGCAGAT
Found at i:103044032 original size:20 final size:19
Alignment explanation
Indices: 103044007--103044117 Score: 111
Period size: 20 Copynumber: 5.6 Consensus size: 19
103043997 TATTTTTAAA
103044007 TTATATATTATATGATTATT
1 TTATATATTATAT-ATTATT
103044027 TTATATATTACTCATATTATT
1 TTATATATTA-T-ATATTATT
103044048 TATATATATTATATATTATT
1 T-TATATATTATATATTATT
* *
103044068 TTCACATA-TATACT-TTCATA
1 TT-ATATATTATA-TATT-ATT
103044088 TTATATATTATAT-TTATT
1 TTATATATTATATATTATT
103044106 TTATATTATTAT
1 TTATA-TATTAT
103044118 GTCATTTTAT
Statistics
Matches: 79, Mismatches: 4, Indels: 17
0.79 0.04 0.17
Matches are distributed among these distances:
18 7 0.09
19 20 0.25
20 32 0.41
21 9 0.11
22 11 0.14
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (19 bp):
TTATATATTATATATTATT
Found at i:103044046 original size:29 final size:26
Alignment explanation
Indices: 103043996--103044066 Score: 72
Period size: 29 Copynumber: 2.6 Consensus size: 26
103043986 TGCTTTGTTT
*
103043996 TTATTTT-TAAATTATATATTATATGA
1 TTATTTTATATATTATATATTAT-TGA
*
103044022 TTATTTTATATATTACTCATATTATTTA
1 TTATTTTATATATTA-T-ATATTATTGA
*
103044050 TATATATTATATATTAT
1 T-TATTTTATATATTAT
103044067 TTTCACATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 7 0.18
27 6 0.16
28 5 0.13
29 20 0.53
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (26 bp):
TTATTTTATATATTATATATTATTGA
Found at i:103044104 original size:13 final size:14
Alignment explanation
Indices: 103044006--103044117 Score: 67
Period size: 13 Copynumber: 7.9 Consensus size: 14
103043996 TTATTTTTAA
103044006 ATTATATATTATAT
1 ATTATATATTATAT
103044020 GATTAT-T-TTATAT
1 -ATTATATATTATAT
*
103044033 ATTACTCATATTATTT
1 ATTA-T-ATATTATAT
103044049 A-TATATATTATAT
1 ATTATATATTATAT
* *
103044062 ATTATTTTCACATATAT
1 ATTA-TAT-A-TTATAT
103044079 ACTT-TCATATTATAT
1 A-TTAT-ATATTATAT
103044094 ATTATAT-TTAT-T
1 ATTATATATTATAT
103044106 -TTATATTATTAT
1 ATTATA-TATTAT
103044118 GTCATTTTAT
Statistics
Matches: 78, Mismatches: 6, Indels: 28
0.70 0.05 0.25
Matches are distributed among these distances:
11 5 0.06
12 6 0.08
13 24 0.31
14 8 0.10
15 17 0.22
16 9 0.12
17 7 0.09
18 2 0.03
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.58
Consensus pattern (14 bp):
ATTATATATTATAT
Done.