Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 315 of 333
Found at i:103044124 original size:18 final size:17
Alignment explanation
Indices: 103044091--103044134 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
103044081 TTTCATATTA
*
103044091 TATATTA-TATTTATTT
1 TATATTATTATTCATTT
103044107 TATATTATTATGTCATTT
1 TATATTATTAT-TCATTT
*
103044125 TATACTATTA
1 TATATTATTA
103044135 AATATTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 7 0.29
17 3 0.12
18 14 0.58
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (17 bp):
TATATTATTATTCATTT
Found at i:103047199 original size:53 final size:52
Alignment explanation
Indices: 103047140--103047240 Score: 157
Period size: 53 Copynumber: 1.9 Consensus size: 52
103047130 CATATCATAT
* * * *
103047140 CGATGCCATATCCCAGCTATGGTCTTATACGGAATCACATTATCACATCACAC
1 CGATGCCATAGCCCAACTATGGTATTATACGGAAGCACA-TATCACATCACAC
103047193 CGATGCCATAGCCCAACTATGGTATTATACGGAAGCACATATCACATC
1 CGATGCCATAGCCCAACTATGGTATTATACGGAAGCACATATCACATC
103047241 TTTTCCGTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 9 0.20
53 35 0.80
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.25
Consensus pattern (52 bp):
CGATGCCATAGCCCAACTATGGTATTATACGGAAGCACATATCACATCACAC
Found at i:103049234 original size:101 final size:101
Alignment explanation
Indices: 103049059--103049255 Score: 394
Period size: 101 Copynumber: 2.0 Consensus size: 101
103049049 TATTCTAATT
103049059 TTTTTTTTGTAAAAGGTTGTTCTGTTATTTAGGATAAACAAGAAAAGTCGAAACCCAGTAAGTTA
1 TTTTTTTTGTAAAAGGTTGTTCTGTTATTTAGGATAAACAAGAAAAGTCGAAACCCAGTAAGTTA
103049124 GGGCACGTTTTCTTGAATTTTCTAATACCGACCTAA
66 GGGCACGTTTTCTTGAATTTTCTAATACCGACCTAA
103049160 TTTTTTTTGTAAAAGGTTGTTCTGTTATTTAGGATAAACAAGAAAAGTCGAAACCCAGTAAGTTA
1 TTTTTTTTGTAAAAGGTTGTTCTGTTATTTAGGATAAACAAGAAAAGTCGAAACCCAGTAAGTTA
103049225 GGGCACGTTTTCTTGAATTTTCTAATACCGA
66 GGGCACGTTTTCTTGAATTTTCTAATACCGA
103049256 ATACTGCCTT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 96 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.37
Consensus pattern (101 bp):
TTTTTTTTGTAAAAGGTTGTTCTGTTATTTAGGATAAACAAGAAAAGTCGAAACCCAGTAAGTTA
GGGCACGTTTTCTTGAATTTTCTAATACCGACCTAA
Found at i:103049947 original size:19 final size:18
Alignment explanation
Indices: 103049923--103049964 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
103049913 TGGTATTAGT
*
103049923 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
103049942 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
103049960 AATAA
1 AATAA
103049965 CACACTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:103050361 original size:13 final size:13
Alignment explanation
Indices: 103050340--103050410 Score: 87
Period size: 13 Copynumber: 5.8 Consensus size: 13
103050330 GTGAAGTGGT
*
103050340 TGGGATGGTTTAG
1 TGGGGTGGTTTAG
103050353 TGGGGTGGTTTAG
1 TGGGGTGGTTTAG
103050366 TGGGGTGG--T--
1 TGGGGTGGTTTAG
*
103050375 TGGAGTGGTTTAG
1 TGGGGTGGTTTAG
*
103050388 TGGAGTGGTTTAG
1 TGGGGTGGTTTAG
103050401 TGGGGTGGTT
1 TGGGGTGGTT
103050411 GGAGTGAAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
9 7 0.14
11 2 0.04
13 42 0.82
ACGTcount: A:0.10, C:0.00, G:0.52, T:0.38
Consensus pattern (13 bp):
TGGGGTGGTTTAG
Found at i:103050384 original size:35 final size:35
Alignment explanation
Indices: 103050335--103050416 Score: 139
Period size: 35 Copynumber: 2.3 Consensus size: 35
103050325 GGCAAGTGAA
*
103050335 GTGGTTGG-GATGGTTTAGTGGGGTGGTTTAGTGGG
1 GTGGTTGGAG-TGGTTTAGTGGAGTGGTTTAGTGGG
103050370 GTGGTTGGAGTGGTTTAGTGGAGTGGTTTAGTGGG
1 GTGGTTGGAGTGGTTTAGTGGAGTGGTTTAGTGGG
103050405 GTGGTTGGAGTG
1 GTGGTTGGAGTG
103050417 AAGATATTTG
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
35 44 0.98
36 1 0.02
ACGTcount: A:0.10, C:0.00, G:0.54, T:0.37
Consensus pattern (35 bp):
GTGGTTGGAGTGGTTTAGTGGAGTGGTTTAGTGGG
Found at i:103051156 original size:206 final size:206
Alignment explanation
Indices: 103050906--103051985 Score: 1944
Period size: 206 Copynumber: 5.2 Consensus size: 206
103050896 CAAATCTGCT
* *
103050906 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCGGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
103050971 ATCTAAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
*
103051036 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTCGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
*
103051101 AATCAGCTATA
196 AATCAGCTATG
103051112 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
*
103051177 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
*
103051242 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCATGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
*
103051307 AATCAACTATG
196 AATCAGCTATG
* *
103051318 TCTTCAATTTGCTCTTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
103051383 GTCTGAAGGCCAGATCTGCTATGTATCCACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
103051448 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
103051513 AATCAGCTATG
196 AATCAGCTATG
*
103051524 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTACTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
103051589 ATCTAAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCTAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
* *
103051654 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTCGCTTTAGCGTAAGCATGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
103051719 AATCAGCTATG
196 AATCAGCTATG
103051730 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
103051795 ATCTGAAGGCCAGATCTGCTATGTATTTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
*
103051860 TTCTCTGACAATATAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
103051925 AATCAGCTATG
196 AATCAGCTATG
* * *
103051936 TCTTCGATTTGCTCCTTGTAAGAACAAGGATACCAAACCATCTTGGATCT
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
103051986 GTTTTAGCCA
Statistics
Matches: 838, Mismatches: 36, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
206 838 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (206 bp):
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
AATCAGCTATG
Found at i:103064324 original size:17 final size:17
Alignment explanation
Indices: 103064294--103064331 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
103064284 AAAAGTAATG
103064294 ATATGTAAATAAAATAA
1 ATATGTAAATAAAATAA
*
103064311 ATATGCTAAA-AAAATAT
1 ATATG-TAAATAAAATAA
103064328 ATAT
1 ATAT
103064332 TTATTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.32
Consensus pattern (17 bp):
ATATGTAAATAAAATAA
Found at i:103064914 original size:22 final size:23
Alignment explanation
Indices: 103064883--103064944 Score: 85
Period size: 22 Copynumber: 2.8 Consensus size: 23
103064873 TTTGTAGGCA
*
103064883 AGTGGAGTGGTTGGGA-TGGTTT
1 AGTGGGGTGGTTGGGAGTGGTTT
*
103064905 AGTGGGGTGGTT-AGAGTGGTTT
1 AGTGGGGTGGTTGGGAGTGGTTT
103064927 AGTGGGGTGGTT-GGAGTG
1 AGTGGGGTGGTTGGGAGTG
103064945 AAGATATTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 2 0.06
22 34 0.94
ACGTcount: A:0.13, C:0.00, G:0.53, T:0.34
Consensus pattern (23 bp):
AGTGGGGTGGTTGGGAGTGGTTT
Found at i:103081695 original size:16 final size:15
Alignment explanation
Indices: 103081674--103081721 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
103081664 GATGGGAATA
103081674 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
103081690 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
103081705 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
103081721 A
1 A
103081722 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:103081704 original size:8 final size:8
Alignment explanation
Indices: 103081670--103081721 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
103081660 CAATGATGGG
*
103081670 AATAATAA
1 AATATTAA
103081678 AATATATAA
1 AATAT-TAA
103081687 AATA-TAA
1 AATATTAA
103081694 AATATTAA
1 AATATTAA
*
103081702 AATATCAA
1 AATATTAA
*
103081710 AATATTAG
1 AATATTAA
103081718 AATA
1 AATA
103081722 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:103081721 original size:24 final size:24
Alignment explanation
Indices: 103081669--103081725 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
103081659 ACAATGATGG
*
103081669 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
103081693 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
103081717 GAATAATAA
1 GAATAATAA
103081726 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:103081901 original size:25 final size:24
Alignment explanation
Indices: 103081852--103081921 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 24
103081842 TACATATATA
*
103081852 AAAAATAAATACATGATA-A-TATT
1 AAAAAT-AATACATAATATAGTATT
*
103081875 AAAAATAAGTACATAATATAGTGTT
1 AAAAATAA-TACATAATATAGTATT
103081900 AAAAATACATACATAATATAGT
1 AAAAATA-ATACATAATATAGT
103081922 TAAGATATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
22 2 0.05
23 14 0.34
24 1 0.02
25 23 0.56
26 1 0.02
ACGTcount: A:0.57, C:0.06, G:0.07, T:0.30
Consensus pattern (24 bp):
AAAAATAATACATAATATAGTATT
Found at i:103081936 original size:22 final size:24
Alignment explanation
Indices: 103081852--103081937 Score: 74
Period size: 25 Copynumber: 3.7 Consensus size: 24
103081842 TACATATATA
* *
103081852 AAAAATAAATACATGATAATA--TT
1 AAAAATACATACATAAT-ATAGGTT
103081875 AAAAATA-AGTACATAATATAGTGTT
1 AAAAATACA-TACATAATATAG-GTT
103081900 AAAAATACATACATAATATA-GTT
1 AAAAATACATACATAATATAGGTT
* *
103081923 -AAGATATATACATAA
1 AAAAATACATACATAA
103081938 GATAACATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
22 17 0.31
23 17 0.31
25 20 0.36
26 1 0.02
ACGTcount: A:0.57, C:0.06, G:0.07, T:0.30
Consensus pattern (24 bp):
AAAAATACATACATAATATAGGTT
Found at i:103081984 original size:25 final size:25
Alignment explanation
Indices: 103081956--103082089 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
103081946 GTAGAAAAAA
103081956 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
103081981 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* * *
103082006 ATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-ATAATATAATATTAAAG
** *
103082032 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
103082054 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
103082077 AAATAT-AATAATA
1 ATATATAAATAATA
103082090 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 5 0.06
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:103081993 original size:14 final size:13
Alignment explanation
Indices: 103081953--103082003 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
103081943 CATGTAGAAA
103081953 AAAATATATAAAT
1 AAAATATATAAAT
* *
103081966 AATATA-AT-ATT
1 AAAATATATAAAT
103081977 AAAGATATATAAAT
1 AAA-ATATATAAAT
103081991 AAAATAGTATAAA
1 AAAATA-TATAAA
103082004 ATATATATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
11 4 0.13
12 5 0.17
13 10 0.33
14 11 0.37
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (13 bp):
AAAATATATAAAT
Found at i:103082606 original size:30 final size:30
Alignment explanation
Indices: 103082571--103082742 Score: 272
Period size: 30 Copynumber: 5.7 Consensus size: 30
103082561 GTACAAGTGA
* *
103082571 TGGTGGAGAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
103082601 TGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
103082631 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
* *
103082661 TGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
103082691 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
103082721 TGGTGGAAAATGAGTGGCTAGT
1 TGGTGGAAAAGGAGTGGCTAGT
103082743 TGAGAAAAGT
Statistics
Matches: 129, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 129 1.00
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (30 bp):
TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
Found at i:103082661 original size:60 final size:60
Alignment explanation
Indices: 103082571--103082742 Score: 317
Period size: 60 Copynumber: 2.9 Consensus size: 60
103082561 GTACAAGTGA
* *
103082571 TGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
103082631 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
*
103082691 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
103082743 TGAGAAAAGT
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 109 1.00
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (60 bp):
TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
Found at i:103083616 original size:78 final size:77
Alignment explanation
Indices: 103083456--103083723 Score: 398
Period size: 77 Copynumber: 3.5 Consensus size: 77
103083446 ATGTAAACCC
* *
103083456 AAGGCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTGAAAAGCAGAAATTGAAAA-CGCCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAG-CT
** * *
103083518 CAGCGTGTGACCC
65 CAGCACGTGAGCA
* *
103083531 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAGCAAAAATTGAAAATAGCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAGCAGAAATTGAAAATAGCT
103083596 CAGCACGTGAGCA
65 CAGCACGTGAGCA
* *
103083609 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
103083674 AGCACGTGAGCA
66 AGCACGTGAGCA
*
103083686 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
103083724 GAAAAATAAA
Statistics
Matches: 174, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
75 31 0.18
77 77 0.44
78 65 0.37
79 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.27
Consensus pattern (77 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
AGCACGTGAGCA
Found at i:103083861 original size:16 final size:17
Alignment explanation
Indices: 103083828--103083862 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
103083818 TGATATTTTG
*
103083828 AAAAGCAGAAATTGGAA
1 AAAAACAGAAATTGGAA
103083845 AAAAACAGAAATT-GAA
1 AAAAACAGAAATTGGAA
103083861 AA
1 AA
103083863 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.66, C:0.06, G:0.17, T:0.11
Consensus pattern (17 bp):
AAAAACAGAAATTGGAA
Found at i:103084045 original size:73 final size:73
Alignment explanation
Indices: 103083962--103084246 Score: 319
Period size: 73 Copynumber: 3.8 Consensus size: 73
103083952 TTAGCGTGCC
* *
103083962 CCGAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTGA-AAAACAGAAATTGAAATTACCT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAAACAGAAATTGAAATTACCT
103084026 CAGCATGT
66 CAGCATGT
103084034 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAACAGAAATTGAAA
1 CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----ACA-AAACAGAAATTGAAA
* * *
103084098 ATACATCAGCACGTGAG
60 TTACCTCAGCA--TG-T
* * * * *
103084115 CCGAGGCTCAACTCACTTCTTGCAATATGAATTGATTTTTTTGACAATA-A-AAATTGCAATTAC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAAACAGAAATTGAAATTAC
*
103084178 CTCAACATGT
64 CTCAGCATGT
*
103084188 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAAACATAAATTGAAA
1 -CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAAACAGAAATTGAAA
103084247 CACAAAAATT
Statistics
Matches: 178, Mismatches: 19, Indels: 31
0.78 0.08 0.14
Matches are distributed among these distances:
71 3 0.02
72 15 0.08
73 39 0.22
74 34 0.19
76 17 0.10
77 2 0.01
78 26 0.15
79 3 0.02
80 32 0.18
81 2 0.01
83 5 0.03
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (73 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAAACAGAAATTGAAATTACCT
CAGCATGT
Found at i:103084309 original size:87 final size:87
Alignment explanation
Indices: 103084163--103084321 Score: 275
Period size: 87 Copynumber: 1.8 Consensus size: 87
103084153 TTTTGACAAT
*
103084163 AAAAATTGCAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAAAATTGCAATTACCTCAACATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
103084228 TGAAAAACATAAATTGAAACAC
66 TGAAAAACATAAATTGAAACAC
* *
103084250 AAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAAAATTG-CAATTACCTCAACATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
103084314 TTGAAAAA
65 TTGAAAAA
103084322 TAGAAATTTA
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
87 65 0.96
88 3 0.04
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (87 bp):
AAAAATTGCAATTACCTCAACATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGAAAAACATAAATTGAAACAC
Found at i:103084415 original size:14 final size:14
Alignment explanation
Indices: 103084396--103084424 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
103084386 TTTTTTTACG
103084396 AACAGAAATTGAAA
1 AACAGAAATTGAAA
103084410 AACAGAAATTGAAA
1 AACAGAAATTGAAA
103084424 A
1 A
103084425 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:103084534 original size:163 final size:159
Alignment explanation
Indices: 103083845--103084861 Score: 912
Period size: 161 Copynumber: 6.4 Consensus size: 159
103083835 GAAATTGGAA
* * *
103083845 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCACAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
** * * * * *
103083910 GATTTATTTTT--TTGAAATT-AAAACACAAAAATCGACAATTCCTTAGCGTGCCCCGAGGCTCA
66 GATTT-TTTTTGACAGAAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCA
*
103083972 ACTCACTTCTTGCAATATGAGTTGATTTTTG
129 ACTCACTTCTCGCAATATGAGTTGATTTTTG
*
103084003 AAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
103084068 GA----TTTTGACA-AACA--G--AAACAGAAATTGAAAATACATCAGCACGTGAGCCGAGGCTC
66 GATTTTTTTTGACAGAA-ATTGAAAAACAAAAATTGAAAATACCTCAG--CGTGACCCGAGGCTC
* *
103084124 AACTCACTTCTTGCAATATGAATTGATTTTTTTG
128 AACTCACTTCTCGCAATATGAGTTGA--TTTTTG
* * * * *
103084158 ACAATA-A-AAATTGCAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 A-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
**** * * * *
103084221 TGATTTTTGAAAAACATAAATTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCA
65 TGATTTTT-TTTGACAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCA
*
103084286 ACTCACCTCTCGCAATATGAGTTGATTTTTG
129 ACTCACTTCTCGCAATATGAGTTGATTTTTG
* * *
103084317 AAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * **
103084382 TGATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGG
65 TGATTTTTTTT--G-ACAGAAATTGAAAAACAAAAATTGAAAATACCTCAGC--GTGACCCGAGG
103084447 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
125 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
*
103084482 ACAAACAGAAATTGAAATTACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * * **
103084546 GA--TTTTTTG--A-AAA-T-------AGAAATTTAAAATACCTCAACGTGTCCTGAGAATCAAC
66 GATTTTTTTTGACAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAAC
*
103084598 TCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAG
131 TCACTTCTCGCAATATGAGTTGA---TTTTT-------G
** *
103084637 AAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCA
1 --A---AA-AACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCA
* * * *
103084701 ATATGAGTT-A--ATTTTTGAC----------AAACAGAAATTGAAATTACCTCAGCGTGTCCCG
57 ATATGAGTTGATTTTTTTTGACAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCG
* *
103084753 AGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTG
122 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
* *
103084791 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
103084856 GATTTT
66 GATTTT
103084862 GAAAAACAAA
Statistics
Matches: 719, Mismatches: 84, Indels: 121
0.78 0.09 0.13
Matches are distributed among these distances:
145 35 0.05
146 33 0.05
147 19 0.03
148 27 0.04
149 2 0.00
151 16 0.02
152 3 0.00
153 42 0.06
154 60 0.08
155 13 0.02
156 4 0.01
157 1 0.00
158 67 0.09
159 13 0.02
160 6 0.01
161 125 0.17
163 95 0.13
164 107 0.15
165 51 0.07
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (159 bp):
AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTTGACAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAAC
TCACTTCTCGCAATATGAGTTGATTTTTG
Found at i:103084537 original size:72 final size:73
Alignment explanation
Indices: 103084404--103084644 Score: 308
Period size: 72 Copynumber: 3.3 Consensus size: 73
103084394 CGAACAGAAA
* * *
103084404 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGT-CGAGGCTCAACTCACTTCTCGCAATA
1 TTGACAAACAGAAATTGAAAATACCTCAGC--GT--GTCCGAGGCTCAACTCACCTCTCGCAATA
103084468 TGAGTTGA-TTT
62 TGAGTTGATTTT
*
103084479 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAG
103084544 TTGATTTT
66 TTGATTTT
* * * **
103084552 TTGA-AAATAGAAATTTAAAATACCTCAACGTGTCCTGAGAATCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGA
103084616 GTTGATTTTT
65 GTTGA-TTTT
* *
103084626 TTTACGAACAGAAATTGAA
1 TTGACAAACAGAAATTGAA
103084645 GAACAGAAAT
Statistics
Matches: 147, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
71 2 0.01
72 60 0.41
73 40 0.27
74 7 0.05
75 38 0.26
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:103084542 original size:237 final size:236
Alignment explanation
Indices: 103084252--103084861 Score: 1035
Period size: 236 Copynumber: 2.6 Consensus size: 236
103084242 TGAAACACAA
*
103084252 AAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGA-AATTACCTCAGCGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
103084316 GAAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
64 GAAAAATAGAAATTT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
103084381 TTGATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAG
128 TTGATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAG
* *
103084446 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAG
193 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
103084490 AAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 AAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
* **
103084555 -AAAATAGAAATTTAAAATACCTCAACGTGTCCTGAGAATCAACTCACCTCTCGCAATATGAGTT
65 AAAAATAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
103084619 GATTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
130 GATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
103084684 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
195 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
*
103084726 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAATTACCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * * * *
103084791 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
65 AAAAATAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
103084856 GATTTT
130 GATTTT
103084862 GAAAAACAAA
Statistics
Matches: 351, Mismatches: 17, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
236 180 0.51
237 146 0.42
238 25 0.07
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (236 bp):
AAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
AAAATAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCT
CAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
Found at i:103084650 original size:14 final size:14
Alignment explanation
Indices: 103084631--103084658 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
103084621 TTTTTTTTAC
103084631 GAACAGAAATTGAA
1 GAACAGAAATTGAA
103084645 GAACAGAAATTGAA
1 GAACAGAAATTGAA
103084659 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:103084901 original size:72 final size:73
Alignment explanation
Indices: 103084646--103084933 Score: 409
Period size: 73 Copynumber: 3.9 Consensus size: 73
103084636 GAAATTGAAG
** *
103084646 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
103084710 AATTTTTGACA
63 GATTTTTGACA
* *
103084721 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
103084786 TTTTGACA
66 TTTTGACA
*
103084794 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
103084858 TTTTGAAA
66 TTTTGACA
* * * * * *
103084866 AACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
103084931 TTT
66 TTT
103084934 CCTTGAAAAG
Statistics
Matches: 195, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
72 66 0.34
73 107 0.55
75 22 0.11
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (73 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGACA
Found at i:103084915 original size:145 final size:147
Alignment explanation
Indices: 103084646--103084933 Score: 411
Period size: 145 Copynumber: 2.0 Consensus size: 147
103084636 GAAATTGAAG
*
103084646 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTAGCAATATGAGTTA
* * * * * *
103084711 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAAT
65 ATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
103084776 ATGAGTTGATTTTTGACA
130 ATGAGTTGATTTTTGACA
** * *
103084794 AACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG
1 AACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTAGCAATATGAGTTA
** *
103084857 A-TTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAAT
65 ATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
103084921 ATGAGTTGATTTT
130 ATGAGTTGATTTT
103084934 CCTTGAAAAG
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
145 69 0.55
146 34 0.27
148 22 0.18
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (147 bp):
AACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTAGCAATATGAGTTAA
TTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGACA
Found at i:103094816 original size:16 final size:15
Alignment explanation
Indices: 103094795--103094842 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
103094785 GATGGGAATA
103094795 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
103094811 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
103094826 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
103094842 A
1 A
103094843 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:103094825 original size:8 final size:8
Alignment explanation
Indices: 103094791--103094842 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
103094781 CAATGATGGG
*
103094791 AATAATAA
1 AATATTAA
103094799 AATATATAA
1 AATAT-TAA
103094808 AATA-TAA
1 AATATTAA
103094815 AATATTAA
1 AATATTAA
*
103094823 AATATCAA
1 AATATTAA
*
103094831 AATATTAG
1 AATATTAA
103094839 AATA
1 AATA
103094843 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:103094842 original size:24 final size:24
Alignment explanation
Indices: 103094790--103094846 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
103094780 ACAATGATGG
*
103094790 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
103094814 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
103094838 GAATAATAA
1 GAATAATAA
103094847 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:103095008 original size:23 final size:22
Alignment explanation
Indices: 103094957--103095010 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
103094947 ATACTACATC
103094957 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
103094976 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
103094999 AATATGTACATA
1 AATATGTACATA
103095011 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:103095057 original size:22 final size:24
Alignment explanation
Indices: 103094973--103095058 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
103094963 TACATATATA
* *
103094973 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
103094996 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
103095021 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
103095044 -AAGATATATACATAA
1 AAAAATATATACATAA
103095059 GATAATATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:103095116 original size:25 final size:25
Alignment explanation
Indices: 103095082--103095215 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
103095072 AAAAATATAT
103095082 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
103095107 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* * *
103095132 ATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-ATAATATAATATTAAAG
** *
103095158 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
103095180 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
103095203 AAATAT-AATAATA
1 ATATATAAATAATA
103095216 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 5 0.06
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:103095730 original size:30 final size:30
Alignment explanation
Indices: 103095696--103095867 Score: 265
Period size: 30 Copynumber: 5.7 Consensus size: 30
103095686 GTACAAGTGA
*
103095696 TGGT-GAAGAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAA-AAGGAGTGGCTAGTGGAGTTGG
* *
103095726 TGGTGGAAAAAGAGTGGCTAGTTGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
103095756 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
* *
103095786 TGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
103095816 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
103095846 TGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGAAAAGGAGTGGCTAGT
103095868 TGAGAAAAGT
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
30 125 0.98
31 3 0.02
ACGTcount: A:0.24, C:0.03, G:0.47, T:0.26
Consensus pattern (30 bp):
TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
Found at i:103095787 original size:60 final size:60
Alignment explanation
Indices: 103095696--103095871 Score: 309
Period size: 60 Copynumber: 2.9 Consensus size: 60
103095686 GTACAAGTGA
*
103095696 TGGT-GAAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTTGAGTTGG
1 TGGTGGAA-AAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTTGAGTTAG
*
103095756 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTTGAGTTAG
*
103095816 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTTGAG
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTTGAG
103095872 AAAAGTTTAA
Statistics
Matches: 111, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
60 108 0.97
61 3 0.03
ACGTcount: A:0.24, C:0.03, G:0.47, T:0.26
Consensus pattern (60 bp):
TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTTGAGTTAG
Found at i:103097499 original size:14 final size:14
Alignment explanation
Indices: 103097480--103097525 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
103097470 TTATGTTTAA
103097480 GTTTGGGCTATTAG
1 GTTTGGGCTATTAG
*
103097494 GTTTGGG-T-TTAA
1 GTTTGGGCTATTAG
* *
103097506 GTTTGGGCCATTGG
1 GTTTGGGCTATTAG
103097520 GTTTGG
1 GTTTGG
103097526 TTTTAGGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 10 0.38
13 1 0.04
14 15 0.58
ACGTcount: A:0.11, C:0.07, G:0.39, T:0.43
Consensus pattern (14 bp):
GTTTGGGCTATTAG
Found at i:103097508 original size:26 final size:26
Alignment explanation
Indices: 103097474--103097530 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
103097464 TGGGTTTTAT
*
103097474 GTTTAAGTTTGGGCTATTAGGTTTGG
1 GTTTAAGTTTGGGCCATTAGGTTTGG
*
103097500 GTTTAAGTTTGGGCCATTGGGTTTGG
1 GTTTAAGTTTGGGCCATTAGGTTTGG
*
103097526 TTTTA
1 GTTTA
103097531 GGATATTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.14, C:0.05, G:0.33, T:0.47
Consensus pattern (26 bp):
GTTTAAGTTTGGGCCATTAGGTTTGG
Found at i:103098183 original size:45 final size:45
Alignment explanation
Indices: 103098133--103098332 Score: 142
Period size: 45 Copynumber: 4.5 Consensus size: 45
103098123 GGTGGCTTAA
*
103098133 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCATCTTCG
1 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCTATCTTCG
* * * ***
103098178 ATCTGCTTCACAGTAACTTCAGGGAA-ACAAGA-TCTAAAAT-TTC-
1 ATCTGCTTCACTGCAACTTCA-GGAAGCCAAGATTC-GCTATCTTCG
* * * * * * * * * ** **
103098221 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGTT-GGTGGCTTAA
1 A-TCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCTATCTTCG
*
103098265 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCTGTCTTCG
1 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCTATCTTCG
103098310 ATCTGCTTCACTGCAACTTCAGG
1 ATCTGCTTCACTGCAACTTCAGG
103098333 GAAACAAGAT
Statistics
Matches: 112, Mismatches: 34, Indels: 18
0.68 0.21 0.11
Matches are distributed among these distances:
43 28 0.25
44 25 0.22
45 55 0.49
46 4 0.04
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (45 bp):
ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCTATCTTCG
Found at i:103098200 original size:132 final size:132
Alignment explanation
Indices: 103097957--103098477 Score: 769
Period size: 132 Copynumber: 3.9 Consensus size: 132
103097947 GCAATCTTCG
* * * * * * * *
103097957 GCCTACTCCGCTACAACCTTAGGGAGCTAGGATAGTGGCTTGAATCTTGCTTCACTGCAATTTTA
1 GCCTACTCCACTACAACTTTAAGGAGCTAGGTTGGTGGCTTAAATC-TGCTTCACTGCAACTTCA
* * * * * *
103098022 GGAAGGCTAGATTCACCGTCTTTGATCTGC-TCTACTGCAACCTCAGGGAGACAAGATCTAAAAT
65 GGAAGCCAAGATTCACCGTCTTCGATCTGCTTC-ACAGCAACTTCAGGGAAACAAGATCTAAAAT
103098086 TTCA
129 TTCA
103098090 GCCTACTCCACTACAACTTTAAGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAG
1 GCCTACTCCACTACAACTTTAAGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAG
* * *
103098155 GAAGCCAAGATTCGCCATCTTCGATCTGCTTCACAGTAACTTCAGGGAAACAAGATCTAAAATTT
66 GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACAGCAACTTCAGGGAAACAAGATCTAAAATTT
103098220 CA
131 CA
*
103098222 GCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAG
1 GCCTACTCCACTACAACTTTAAGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAG
* * *
103098287 GAAGCCAAGATTCGCTGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTT
66 GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACAGCAACTTCAGGGAAACAAGATCTAAAATTT
103098352 CA
131 CA
* *
103098354 GCCTACTCCACCACAACTTT-AGAGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGTAACTTCA
1 GCCTACTCCACTACAACTTTAAG-GAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
*
103098418 GGAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTA-CAACTTCAGGAAAACAAGATCTA
65 GGAAGCCAAGATTCACCGTCTTCGATCTGCTTCAC-AGCAACTTCAGGGAAACAAGATCTA
103098478 TAGGATTCGC
Statistics
Matches: 356, Mismatches: 29, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
131 1 0.00
132 313 0.88
133 42 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
GCCTACTCCACTACAACTTTAAGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAG
GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACAGCAACTTCAGGGAAACAAGATCTAAAATTT
CA
Found at i:103104613 original size:46 final size:46
Alignment explanation
Indices: 103104546--103104719 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
103104536 GTAACCCGCC
103104546 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATT
* *
103104592 CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA-T
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATT
* * ** * *
103104641 C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATT
*
103104685 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
103104720 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 2 0.02
45 2 0.02
46 62 0.58
47 26 0.24
48 3 0.03
49 3 0.03
50 2 0.02
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATT
Found at i:103104664 original size:93 final size:93
Alignment explanation
Indices: 103104552--103104723 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
103104542 CGCCCATAAG
** * *
103104552 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATTCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
103104617 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
103104645 TGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
103104710 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
103104724 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:103107295 original size:72 final size:72
Alignment explanation
Indices: 103107084--103108254 Score: 1130
Period size: 72 Copynumber: 15.5 Consensus size: 72
103107074 GTGATCTGAA
* *
103107084 GCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTTTTGAAAGACAGAAATTGAAAATACCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-----ATTTTGAAA-ACAGAAATTGAAATTACCTC
* *
103107149 AGCATGTGAAC-CGAG
60 AGC--GTG-TCTTGAG
* * * * * *
103107164 GCTCAACTCACCTCTCACAATATAAGTTGATTTTTTTGAAAACAAAAATTGAAAATACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAGCG
103107229 TGTCTTGAG
64 TGTCTTGAG
** *
103107238 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCATG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
103107303 TCCTGAG
66 TCTTGAG
* * *
103107310 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTTTTGACAACAGAAATTGAAATTACCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA------ATTTTGAAAACAGAAATTGAAATTACCTC
*
103107375 AGCGTGTCCTGAG
60 AGCGTGTCTTGAG
*
103107388 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTAAAAGGCAGAAATTGAAAAACGGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGAA--TTTTGAAAA--CAGAAATT--------GAAAT
** * *
103107453 TGAAAAT-A-CCTCGGCGTGTGA-
54 T--ACCTCAGCGT-GTC-T-TGAG
* * * * *
103107474 CCT-AAGGCTCAACCCGCCTCTTGCAATACGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAAA
1 GCTCAA--CTC-A----CCTCTCGCAATATGAGTTGA----ATTTTGAAA-ACAGAAATTGAAAT
* *
103107538 TACCTCAGCATGTGAAC-CGAG
54 TACCTCAGC--GTG-TCTTGAG
* * * * *
103107559 ACTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCAGC
*
103107624 ATGTCTTGAG
63 GTGTCTTGAG
** * *
103107634 GCTCAACTCATTTCTTGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
103107699 TCTTGAG
66 TCTTGAG
* **
103107706 GCGCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
**
103107771 TCCCGAG
66 TCTTGAG
* * *
103107778 GCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAACGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
103107843 TCTTGAG
66 TCTTGAG
** *
103107850 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
**
103107915 TCCCGAG
66 TCTTGAG
*
103107922 GCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
**
103107987 TCCCGAG
66 TCTTGAG
* * * *
103107994 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTAAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAATTACCTCAGC
*
103108059 ATGTCTTGAG
63 GTGTCTTGAG
* *
103108069 GCTCAACTCACTTCTCGCAATATGAGTTAAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
**
103108134 TCCCGAG
66 TCTTGAG
* * * *
103108141 GCTCGACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAATTACCTCAGC
*
103108206 ATGTCTTGAG
63 GTGTCTTGAG
**
103108216 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAA
103108255 TAAAACATCA
Statistics
Matches: 934, Mismatches: 107, Indels: 107
0.81 0.09 0.09
Matches are distributed among these distances:
72 454 0.49
73 17 0.02
74 56 0.06
75 140 0.15
76 29 0.03
77 33 0.04
78 80 0.09
79 17 0.02
80 28 0.03
83 3 0.00
84 14 0.01
85 13 0.01
86 7 0.01
87 8 0.01
88 1 0.00
92 18 0.02
93 8 0.01
94 7 0.01
95 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (72 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCTTGAG
Found at i:103107515 original size:92 final size:91
Alignment explanation
Indices: 103107358--103107537 Score: 245
Period size: 92 Copynumber: 2.0 Consensus size: 91
103107348 TTTGACAACA
* * * *
103107358 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTT
1 GAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACCCACCTCTCGCAATACGAGTTGATATTT
*
103107422 TTTTAAAAGGCAGAAATTGAAAAACG
66 TTTTAAAAGACAGAAATTGAAAAACG
* * * *
103107448 GAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACCCGCCTCTTGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTAAGGCTCAACCCACCTCTCGCAATACGAGTTGATAT
*
103107513 TTTTTTGAAAGACAGAAATTGAAAA
64 TTTTTTAAAAGACAGAAATTGAAAA
103107538 TACCTCAGCA
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
90 22 0.29
92 31 0.40
93 24 0.31
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (91 bp):
GAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACCCACCTCTCGCAATACGAGTTGATATTT
TTTTAAAAGACAGAAATTGAAAAACG
Found at i:103107594 original size:170 final size:167
Alignment explanation
Indices: 103107274--103107614 Score: 449
Period size: 170 Copynumber: 2.0 Consensus size: 167
103107264 TTGAATTTTG
* * * *
103107274 AAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGTCCTAAGGCTCAACCCACCTCTTGCAATACGAGTTG
* * * *
103107339 ATTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
66 A-TTTTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGACTCAACTCACCTCTC
*
103107404 GCAATATGAGTTGAA-TTTTTTT-AAAAGGCAGAAATTGA
130 GCAATATAAGTTGAATTTTTTTTGAAAA--CAGAAATTGA
* * * *
103107442 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACCCGCCTCTTGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGCATGT--CCTAAGGCTCAACCCACCTCTTGCAATACGAGT
103107507 TGA-TTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGACTCAACTCAC
64 TGATTTTTTTTTTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGACTCAACTCAC
103107570 CTCTCGCAATATAAGTTG-ATTTTTTTTGAAAACAGAAATTGA
125 CTCTCGCAATATAAGTTGAATTTTTTTTGAAAACAGAAATTGA
103107612 AAA
1 AAA
103107615 TACCTCAACA
Statistics
Matches: 152, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
168 38 0.25
169 22 0.14
170 46 0.30
171 40 0.26
172 6 0.04
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (167 bp):
AAAACAGAAATTGAAAATACCTCAGCATGTCCTAAGGCTCAACCCACCTCTTGCAATACGAGTTG
ATTTTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGACTCAACTCACCTCTCG
CAATATAAGTTGAATTTTTTTTGAAAACAGAAATTGA
Found at i:103116580 original size:12 final size:12
Alignment explanation
Indices: 103116560--103116595 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
103116550 TGGGATATGC
*
103116560 AATGTATGAATG
1 AATGCATGAATG
103116572 AATGCATGAATG
1 AATGCATGAATG
103116584 AATGCATGAATG
1 AATGCATGAATG
103116596 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:103118148 original size:16 final size:15
Alignment explanation
Indices: 103118127--103118174 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
103118117 GATGTGAATA
103118127 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
103118143 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
103118158 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
103118174 A
1 A
103118175 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:103118150 original size:24 final size:24
Alignment explanation
Indices: 103118123--103118178 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
103118113 TAATGATGTG
*
103118123 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
103118147 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
103118171 AATAATAA
1 AATAATAA
103118179 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:103118157 original size:8 final size:8
Alignment explanation
Indices: 103118123--103118174 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
103118113 TAATGATGTG
*
103118123 AATAATAA
1 AATATTAA
103118131 AATATATAA
1 AATAT-TAA
103118140 AATA-TAA
1 AATATTAA
103118147 AATATTAA
1 AATATTAA
*
103118155 AATATCAA
1 AATATTAA
*
103118163 AATATTAG
1 AATATTAA
103118171 AATA
1 AATA
103118175 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:103118424 original size:15 final size:14
Alignment explanation
Indices: 103118403--103118469 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
103118393 ATAACATGTA
103118403 AAAAATATATATAT
1 AAAAATATATATAT
103118417 AAATAATATA-ATATT
1 AAA-AATATATATA-T
* *
103118432 AAAGATATATACAT
1 AAAAATATATATAT
*
103118446 -AAAATA-GTATA-
1 AAAAATATATATAT
*
103118457 AAATATATATATA
1 AAAAATATATATA
103118470 CGTAATATAG
Statistics
Matches: 41, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
12 8 0.20
13 9 0.22
14 12 0.29
15 12 0.29
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (14 bp):
AAAAATATATATAT
Found at i:103118442 original size:31 final size:31
Alignment explanation
Indices: 103118380--103118457 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
103118370 TATAGGTAAG
* *
103118380 ATATATACATAAGATAACATGTAAAAAATAT
1 ATATATAAATAATATAACATGTAAAAAATAT
* *
103118411 ATATATAAATAATATAATAT-T-AAAGATAT
1 ATATATAAATAATATAACATGTAAAAAATAT
* *
103118440 ATACATAAAATAGTATAA
1 ATATAT-AAATAATATAA
103118458 AATATATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 12 0.30
30 11 0.28
31 17 0.43
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (31 bp):
ATATATAAATAATATAACATGTAAAAAATAT
Found at i:103118447 original size:25 final size:25
Alignment explanation
Indices: 103118322--103118544 Score: 92
Period size: 25 Copynumber: 9.0 Consensus size: 25
103118312 TAAATACGTG
*
103118322 ATAATATTAAA-ATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
103118346 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
** *
103118371 AT-A-GGT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
103118393 ATAACATGTAAAAAATATATATATAAATAAT
1 ATAATAT-T----AA-AGATATATACATAAT
*
103118424 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * * *
103118449 ATAGTATAAAATATATATATACGTAAT
1 ATAATAT-TAA-AGATATATACATAAT
* *
103118476 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
* *
103118499 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
103118521 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
103118544 A
1 A
103118545 ACAAAAAAGG
Statistics
Matches: 149, Mismatches: 32, Indels: 37
0.68 0.15 0.17
Matches are distributed among these distances:
21 4 0.03
22 27 0.18
23 27 0.18
24 16 0.11
25 33 0.22
26 5 0.03
27 17 0.11
30 2 0.01
31 18 0.12
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:103118451 original size:27 final size:27
Alignment explanation
Indices: 103118377--103118467 Score: 71
Period size: 29 Copynumber: 3.4 Consensus size: 27
103118367 TAATATAGGT
* *
103118377 AAGATATATACATAAGATAACATGTAA
1 AAGATATATACATAAAATAACATATAA
* * *
103118404 AAAATATATATATAAATAATATA-ATATTA
1 AAGATATATACAT-AA-AATA-ACATATAA
*
103118433 AAGATATATACATAAAAT-A-GTATAA
1 AAGATATATACATAAAATAACATATAA
*
103118458 AATATATATA
1 AAGATATATA
103118468 TACGTAATAT
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
25 14 0.27
27 14 0.27
28 4 0.08
29 18 0.35
30 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (27 bp):
AAGATATATACATAAAATAACATATAA
Found at i:103118468 original size:27 final size:27
Alignment explanation
Indices: 103118333--103118479 Score: 99
Period size: 27 Copynumber: 5.6 Consensus size: 27
103118323 TAATATTAAA
* * *
103118333 ATATGTACATAATATAGTGTTAAA-A-
1 ATATATACATAATATAGTATAAAATAT
* * *
103118358 ATACATACATAATATAG-GTAAGATAT
1 ATATATACATAATATAGTATAAAATAT
* * * *
103118384 ATACATAAGATAACAT-GTAAAAAATAT
1 ATATAT-ACATAATATAGTATAAAATAT
* * * *
103118411 ATATATAAATAATATAATAT-TAA-AG
1 ATATATACATAATATAGTATAAAATAT
*
103118436 ATATATACATAAAATAGTATAAAATAT
1 ATATATACATAATATAGTATAAAATAT
*
103118463 ATATATACGTAATATAG
1 ATATATACATAATATAG
103118480 AATTTAAAAT
Statistics
Matches: 92, Mismatches: 23, Indels: 12
0.72 0.18 0.09
Matches are distributed among these distances:
24 4 0.04
25 34 0.37
26 18 0.20
27 36 0.39
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (27 bp):
ATATATACATAATATAGTATAAAATAT
Found at i:103119107 original size:30 final size:30
Alignment explanation
Indices: 103119073--103119293 Score: 361
Period size: 30 Copynumber: 7.4 Consensus size: 30
103119063 AATGGAGCAA
*
103119073 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
103119103 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAA
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
* *
103119133 GAGTAGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
103119163 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAA
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
* *
103119193 GAGTGGCTAGTGGAGTTGGTGGTGAAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
103119223 GTATGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
103119253 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
103119283 GAGTGGCTAGT
1 GTGTGGCTAGT
103119294 TGAGAAAAGT
Statistics
Matches: 175, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 175 1.00
ACGTcount: A:0.23, C:0.04, G:0.47, T:0.26
Consensus pattern (30 bp):
GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:103142654 original size:43 final size:45
Alignment explanation
Indices: 103142607--103142716 Score: 109
Period size: 45 Copynumber: 2.5 Consensus size: 45
103142597 TTTTGAATGA
* *
103142607 TTTATCCACACCAT-TTGAGC-A-GCTTATATGCACCATTGAGTGG
1 TTTATCCACACCATATT-AGCAACGCTTATATACACCAATGAGTGG
* * * * *
103142650 TTTATCGATACCGTATTAGCAACGTTTATCTACACCAATGAGTGG
1 TTTATCCACACCATATTAGCAACGCTTATATACACCAATGAGTGG
* *
103142695 TTTATCCACACCCTACTAGCAA
1 TTTATCCACACCATATTAGCAA
103142717 TTTATTTGCA
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
43 14 0.26
44 3 0.06
45 36 0.68
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (45 bp):
TTTATCCACACCATATTAGCAACGCTTATATACACCAATGAGTGG
Found at i:103144554 original size:3 final size:3
Alignment explanation
Indices: 103144546--103144623 Score: 54
Period size: 3 Copynumber: 26.3 Consensus size: 3
103144536 TTTACCCCTG
* * **
103144546 TTA TTA TTA TTA TCA TTA TT- TTA TCTA CTTA TTA TCA TTA AGA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA TTA TTA
* * *
103144591 TGA TTA TTA ATA TTA TTA TTA -CA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
103144624 AGTATTCCTT
Statistics
Matches: 57, Mismatches: 13, Indels: 10
0.71 0.16 0.12
Matches are distributed among these distances:
2 4 0.07
3 48 0.84
4 4 0.07
5 1 0.02
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:103144629 original size:11 final size:11
Alignment explanation
Indices: 103144546--103144629 Score: 51
Period size: 11 Copynumber: 7.2 Consensus size: 11
103144536 TTTACCCCTG
103144546 TTATTATTATTA
1 TTATTA-TATTA
* *
103144558 TCATTATTTTA
1 TTATTATATTA
*
103144569 TCTACTTATTATCA
1 T-TA-TTA-TATTA
** *
103144583 TTAAGATATGA
1 TTATTATATTA
103144594 TTATTAATATTA
1 TTATT-ATATTA
*
103144606 TTATTACATTA
1 TTATTATATTA
*
103144617 TTATTATAGTA
1 TTATTATATTA
103144628 TT
1 TT
103144630 CCTTTATTTA
Statistics
Matches: 54, Mismatches: 14, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
11 28 0.52
12 17 0.31
13 5 0.09
14 4 0.07
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.56
Consensus pattern (11 bp):
TTATTATATTA
Found at i:103148309 original size:46 final size:44
Alignment explanation
Indices: 103148205--103148312 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
103148195 TGTCTTTAAC
** * * *
103148205 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
103148249 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
103148295 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
103148313 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:103149212 original size:19 final size:20
Alignment explanation
Indices: 103149190--103149230 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
103149180 TTCTATTCTG
*
103149190 TTTCTTTTCTTTCTTTT-TT
1 TTTCTATTCTTTCTTTTGTT
103149209 TTTCTATTCTTTCTTTTGTT
1 TTTCTATTCTTTCTTTTGTT
103149229 TT
1 TT
103149231 ATGTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.80
Consensus pattern (20 bp):
TTTCTATTCTTTCTTTTGTT
Found at i:103149218 original size:15 final size:15
Alignment explanation
Indices: 103149180--103149225 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
103149170 GTTTCGTCTC
*
103149180 TTCTATTCTGTTTCTT
1 TTCTATTCT-TTTTTT
103149196 TTCT-TTCTTTTTTT
1 TTCTATTCTTTTTTT
103149210 TTCTATTCTTTCTTTT
1 TTCTATTCTTT-TTTT
103149226 GTTTTATGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 9 0.33
15 10 0.37
16 8 0.30
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.76
Consensus pattern (15 bp):
TTCTATTCTTTTTTT
Found at i:103154436 original size:46 final size:44
Alignment explanation
Indices: 103154332--103154439 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
103154322 TGTCTTTAAC
** * * *
103154332 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
103154376 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
103154422 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
103154440 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:103155348 original size:16 final size:16
Alignment explanation
Indices: 103155307--103155353 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
103155297 GTTTCGTCTC
*
103155307 TTCTATTCTGTT-TCTT
1 TTCTATTCT-TTCTTTT
103155323 TTCT-TTCTTTCTTTT
1 TTCTATTCTTTCTTTT
103155338 TTCTATTCTTTCTTTT
1 TTCTATTCTTTCTTTT
103155354 GTTTTATGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 2 0.07
15 11 0.39
16 15 0.54
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.74
Consensus pattern (16 bp):
TTCTATTCTTTCTTTT
Found at i:103155375 original size:5 final size:5
Alignment explanation
Indices: 103155362--103155434 Score: 64
Period size: 5 Copynumber: 14.6 Consensus size: 5
103155352 TTGTTTTATG
103155362 TATATA TATAA TATAA TATAA TAT-A T-TAA TAATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
103155410 CATAA TCATTAC TATAA TATAA TAT
1 TATAA T-A-TAA TATAA TATAA TAT
103155435 TTTTTTAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 35 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:103155387 original size:19 final size:19
Alignment explanation
Indices: 103155363--103155405 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
103155353 TGTTTTATGT
103155363 ATATATATAAT-ATAATATA
1 ATATAT-TAATAATAATATA
103155382 ATATATTAATAATAATATA
1 ATATATTAATAATAATATA
103155401 ATATA
1 ATATA
103155406 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATATATTAATAATAATATA
Found at i:103155415 original size:24 final size:25
Alignment explanation
Indices: 103155369--103155433 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
103155359 ATGTATATAT
* *
103155369 ATAATATAATATAATATATTAAT-A
1 ATAATATAATATAATAAAATAATCA
103155393 ATAATATAATATAA-AAACATAATCA
1 ATAATATAATATAATAAA-ATAATCA
* *
103155418 TTACTATAATATAATA
1 ATAATATAATATAATA
103155434 TTTTTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 18 0.53
25 13 0.38
26 1 0.03
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (25 bp):
ATAATATAATATAATAAAATAATCA
Found at i:103156012 original size:33 final size:33
Alignment explanation
Indices: 103155948--103156014 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
103155938 TACTTTCTTT
* * *
103155948 TTGGTGTGATGGTTGGTTTAGCTCTTATGAGCA
1 TTGGTGTGATGGATGGATTAGCTCTGATGAGCA
*
103155981 TTGGTGTGATGGATGGATTGGCTC-GAGTGAGCA
1 TTGGTGTGATGGATGGATTAGCTCTGA-TGAGCA
103156014 T
1 T
103156015 CTATTGTGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 1 0.03
33 28 0.97
ACGTcount: A:0.16, C:0.09, G:0.37, T:0.37
Consensus pattern (33 bp):
TTGGTGTGATGGATGGATTAGCTCTGATGAGCA
Found at i:103169619 original size:21 final size:21
Alignment explanation
Indices: 103169593--103169633 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
103169583 AGACGAGCAA
* *
103169593 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
103169614 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
103169634 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:103176622 original size:20 final size:20
Alignment explanation
Indices: 103176594--103176632 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
103176584 AGATATGACC
*
103176594 CATTAAAAACCTTCCAAATA
1 CATTAAAAACCTTCAAAATA
* *
103176614 CATTGAAAAGCTTCAAAAT
1 CATTAAAAACCTTCAAAAT
103176633 TTCGAATATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.26
Consensus pattern (20 bp):
CATTAAAAACCTTCAAAATA
Found at i:103178246 original size:21 final size:23
Alignment explanation
Indices: 103178203--103178248 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
103178193 TTATGTCTAT
*
103178203 AAAATTATTAAATGTTTCTATAAA
1 AAAATTATTAAA-GTTTCAATAAA
103178227 AAAATTATTAAA-TTT-AATAAA
1 AAAATTATTAAAGTTTCAATAAA
103178248 A
1 A
103178249 TTTTTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 3 0.14
24 12 0.57
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
AAAATTATTAAAGTTTCAATAAA
Found at i:103187189 original size:11 final size:11
Alignment explanation
Indices: 103187175--103187224 Score: 54
Period size: 10 Copynumber: 4.8 Consensus size: 11
103187165 TCAGATTTTA
103187175 AAAAAATATCT
1 AAAAAATATCT
103187186 AAAAAA-AT-T
1 AAAAAATATCT
103187195 ATAAAAA-ATCT
1 A-AAAAATATCT
*
103187206 AAAAAAT-TCA
1 AAAAAATATCT
103187216 AAAAAATAT
1 AAAAAATAT
103187225 AAAATAAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
9 2 0.06
10 23 0.68
11 9 0.26
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAAATATCT
Found at i:103187211 original size:19 final size:19
Alignment explanation
Indices: 103187175--103187228 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 19
103187165 TCAGATTTTA
103187175 AAAAAATATCTAAAAAAATT-
1 AAAAAA-ATCT-AAAAAATTC
103187195 ATAAAAAATCTAAAAAATTC
1 A-AAAAAATCTAAAAAATTC
*
103187215 AAAAAAATATAAAA
1 AAAAAAATCTAAAA
103187229 TAAAACTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
19 20 0.65
20 6 0.19
21 5 0.16
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAAAATCTAAAAAATTC
Found at i:103187344 original size:20 final size:21
Alignment explanation
Indices: 103187321--103187365 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
103187311 AAAATCATAT
*
103187321 AAAATTTATGAAAA-TAT-TTA
1 AAAATTT-TAAAAATTATATTA
103187341 AAAATTTTAAAAATTATATTA
1 AAAATTTTAAAAATTATATTA
103187362 AAAA
1 AAAA
103187366 CATTTTATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
20 10 0.45
21 7 0.32
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
AAAATTTTAAAAATTATATTA
Found at i:103191267 original size:18 final size:18
Alignment explanation
Indices: 103191246--103191284 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
103191236 AACAGGAAAG
*
103191246 AGGTTATAA-GAAGATGAA
1 AGGTT-TAAGGAAGATAAA
103191264 AGGTTTAAGGAAGATAAA
1 AGGTTTAAGGAAGATAAA
103191282 AGG
1 AGG
103191285 CTCACTGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.49, C:0.00, G:0.31, T:0.21
Consensus pattern (18 bp):
AGGTTTAAGGAAGATAAA
Found at i:103192428 original size:5 final size:5
Alignment explanation
Indices: 103192404--103192440 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
103192394 AAGGATGAAG
103192404 AAATA ATAAT- AAAT- AAATA AAATA AAATA AAATA AAA
1 AAATA A-AATA AAATA AAATA AAATA AAATA AAATA AAA
103192441 ATTTTGTGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 7 0.23
5 20 0.67
6 3 0.10
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AAATA
Found at i:103193418 original size:15 final size:15
Alignment explanation
Indices: 103193396--103193436 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
103193386 CTTGAGGAGT
103193396 TTTTTTTTGTATT-C
1 TTTTTTTTGTATTGC
103193410 TTGTTTTTTG-ATTGC
1 TT-TTTTTTGTATTGC
103193425 TTTTTTTT-TATT
1 TTTTTTTTGTATT
103193437 TCGATTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 14 0.58
15 10 0.42
ACGTcount: A:0.07, C:0.05, G:0.10, T:0.78
Consensus pattern (15 bp):
TTTTTTTTGTATTGC
Found at i:103194168 original size:12 final size:12
Alignment explanation
Indices: 103194151--103194185 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
103194141 ATACCTGATC
*
103194151 TTCCCTTTCCCT
1 TTCCCTTCCCCT
103194163 TTCCCTTCCCCT
1 TTCCCTTCCCCT
*
103194175 TCCCCTTCCCC
1 TTCCCTTCCCC
103194186 CATCCTTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (12 bp):
TTCCCTTCCCCT
Found at i:103194172 original size:17 final size:17
Alignment explanation
Indices: 103194150--103194184 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
103194140 AATACCTGAT
* *
103194150 CTTCCCTTTCCCTTTCC
1 CTTCCCCTTCCCCTTCC
103194167 CTTCCCCTTCCCCTTCC
1 CTTCCCCTTCCCCTTCC
103194184 C
1 C
103194185 CCATCCTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (17 bp):
CTTCCCCTTCCCCTTCC
Found at i:103195332 original size:17 final size:19
Alignment explanation
Indices: 103195310--103195352 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
103195300 ATAGAAATAT
103195310 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
103195327 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
103195346 AATCTTA
1 AATCTTA
103195353 GAAGATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:103195342 original size:19 final size:19
Alignment explanation
Indices: 103195318--103195354 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
103195308 ATAATCTTCA
103195318 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103195337 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
103195355 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:103195380 original size:22 final size:22
Alignment explanation
Indices: 103195318--103195377 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 22
103195308 ATAATCTTCA
*
103195318 ATGATATGCAATCTT---AGAT
1 ATGATATACAATCTTAGAAGAT
*
103195337 ATGATATGCAATCTTAGAAGAT
1 ATGATATACAATCTTAGAAGAT
*
103195359 ATGATTATATAATCTTAGA
1 ATGA-TATACAATCTTAGA
103195378 GATTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.43
22 8 0.23
23 12 0.34
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (22 bp):
ATGATATACAATCTTAGAAGAT
Found at i:103195668 original size:18 final size:17
Alignment explanation
Indices: 103195645--103195678 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
103195635 GTTTTCCTAT
*
103195645 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
103195663 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
103195679 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:103204273 original size:89 final size:89
Alignment explanation
Indices: 103204075--103204266 Score: 287
Period size: 89 Copynumber: 2.2 Consensus size: 89
103204065 ATTCGACGGA
* *
103204075 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAACAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCAAAGATG
* ** *
103204140 ATTTGGCATCTTTGGGTTGACCAG
66 ATTTGGCATCCTTGCATTGACAAG
* *
103204164 GAGCAGAT-TAGAGACATAACAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCAAAGAT
1 GAGCAGATCGA-AGACATAACAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCAAAGAT
*
103204228 GATTTGGCATCCTTGCATTTACAAG
65 GATTTGGCATCCTTGCATTGACAAG
103204253 GAGCAGATCGAAGA
1 GAGCAGATCGAAGA
103204267 TGTAACACCC
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
88 1 0.01
89 89 0.98
90 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (89 bp):
GAGCAGATCGAAGACATAACAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCAAAGATG
ATTTGGCATCCTTGCATTGACAAG
Found at i:103205703 original size:40 final size:39
Alignment explanation
Indices: 103205656--103205900 Score: 276
Period size: 40 Copynumber: 6.2 Consensus size: 39
103205646 CTTGCACAAG
* * *
103205656 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGTATAAAT
1 GCCTTCGGGTCTTAGCCCGGAT-TAGTCACTAGCACAAAT
* **
103205696 GCCTTCGGGACTTAGCCCGGATATAGTCGTTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGAT-TAGTCACTAGCACAAAT
* *
103205736 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGTACAAAT
1 GCCTTCGGGTCTTAGCCCGGAT-TAGTC-ACTAGCACAAAT
* * * * *
103205776 GCCTTCGGATCTTAGTCCGGATTAGTAACTCGTACAAAT
1 GCCTTCGGGTCTTAGCCCGGATTAGTCACTAGCACAAAT
* * * *
103205815 GCCTTCGGATCTTAGTCCGGATTAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATTAGTCACTAGCACAAAT
*
103205854 GCCTTCGGGACTTAGCCCGGGATTAGTCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCC-GGATTAGTCACTAGCACAAAT
103205894 GCCTTCG
1 GCCTTCG
103205901 TTATCATCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
39 69 0.38
40 113 0.62
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGTCTTAGCCCGGATTAGTCACTAGCACAAAT
Found at i:103205877 original size:79 final size:79
Alignment explanation
Indices: 103205620--103205900 Score: 327
Period size: 79 Copynumber: 3.6 Consensus size: 79
103205610 ACCCAAGTAT
* ** * * *
103205620 CTTCGGGATTTAG-CCGGATATAACCACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGAT-TAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
* * *
103205683 CACTAGTATAAATGC
65 AACTCGTACAAATGC
** *
103205698 CTTCGGGACTTAGCCCGGATATAGTCGTTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGGACTTAGCCCGGAT-TAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
103205763 AACTCGTACAAATGC
65 AACTCGTACAAATGC
* * * * * *
103205778 CTTC-GGATCTTAGTCCGGATTAGTAACTCGTACAAATGCCTTCGGATCTTAGTCCGGAT-TAGT
1 CTTCGGGA-CTTAGCCCGGATTAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
103205841 AACTCGCACAAATGC
65 AACTCGTACAAATGC
103205856 CTTCGGGACTTAGCCCGGGATTAGTCACTAGCACAAATGCCTTCG
1 CTTCGGGACTTAGCCC-GGATTAGTCACTAGCACAAATGCCTTCG
103205901 TTATCATCCG
Statistics
Matches: 172, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
78 40 0.23
79 78 0.45
80 54 0.31
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATTAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTA
ACTCGTACAAATGC
Found at i:103214095 original size:40 final size:38
Alignment explanation
Indices: 103214049--103214254 Score: 198
Period size: 40 Copynumber: 5.2 Consensus size: 38
103214039 CTTGCACAAG
* *
103214049 GCCTTCGGGTCTTAGCCCGGATACGGTCACTAGTATAAAT
1 GCCTTCGGGTCTTAGCCCGGATA--GTCACTAGCACAAAT
* * *
103214089 GCCTTCGGGACTTAGCCGGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGG--ATAGTCACTAGCACAAAT
* *
103214129 GCCTTCGGGTCTTAGCCCGGATA-TAGCAACTCGTACAAAT
1 GCCTTCGGGTCTTAGCCCGGATAGT--C-ACTAGCACAAAT
** * * *
103214169 GCCTTCGAATCTTAGTCCGGATTAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGA-TAGTCACTAGCACAAAT
*
103214208 GCCTTCGGGACTTAGCCCGAGATTAGTCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCG-GA-TAGTCACTAGCACAAAT
103214248 GCCTTCG
1 GCCTTCG
103214255 TTATCATCCG
Statistics
Matches: 137, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
37 1 0.01
38 3 0.02
39 27 0.20
40 100 0.73
41 2 0.01
42 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (38 bp):
GCCTTCGGGTCTTAGCCCGGATAGTCACTAGCACAAAT
Found at i:103214246 original size:79 final size:78
Alignment explanation
Indices: 103214049--103214254 Score: 240
Period size: 79 Copynumber: 2.6 Consensus size: 78
103214039 CTTGCACAAG
* *
103214049 GCCTTCGGGTCTTAGCCCGGA-TACGGTCACTAGTATAAATGCCTTCGGGACTTAGCCGGGATAT
1 GCCTTCGGGTCTTAGCCCGGATTA--GTCACTAGTACAAATGCCTTC-GAACTTAGCCGGGATAT
**
103214113 AGTCGCTAGCACAAAT
63 AGTAACTAGCACAAAT
*
103214129 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGTACAAATGCCTTCGAATCTTAGTCC-GGAT-
1 GCCTTCGGGTCTTAGCCCGGAT-TAGTC-ACTAGTACAAATGCCTTCGAA-CTTAG-CCGGGATA
*
103214191 TAGTAACTCGCACAAAT
62 TAGTAACTAGCACAAAT
* *
103214208 GCCTTCGGGACTTAGCCCGAGATTAGTCACTAGCACAAATGCCTTCG
1 GCCTTCGGGTCTTAGCCCG-GATTAGTCACTAGTACAAATGCCTTCG
103214255 TTATCATCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
79 55 0.50
80 51 0.46
81 2 0.02
82 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
GCCTTCGGGTCTTAGCCCGGATTAGTCACTAGTACAAATGCCTTCGAACTTAGCCGGGATATAGT
AACTAGCACAAAT
Found at i:103215100 original size:78 final size:78
Alignment explanation
Indices: 103214991--103215285 Score: 450
Period size: 78 Copynumber: 3.8 Consensus size: 78
103214981 CGAAGAAACA
** *
103214991 GATTTGGCATCTCCATATTCGAC-GGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGA-AGCAGATCGAAGACATAGCAGATCTGACCTTCATTGA
*
103215055 AGCAGATCCAAGAT
65 AGCAGATTCAAGAT
*
103215069 GATTTGGCATCTCTGTATTAGACGGGAAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGAAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
103215134 GCAGATTCACGAT
66 GCAGATTCAAGAT
* * * *
103215147 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAAATAACAGAT-TGGACCTTTATTGA
1 GATTTGGCATCTCTGTATTAGACGGGAAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
103215211 AGTAGATTCAAGAT
65 AGCAGATTCAAGAT
*
103215225 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGAAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
103215286 GTGTTTACAT
Statistics
Matches: 198, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
77 1 0.01
78 193 0.97
79 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGAAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATTCAAGAT
Found at i:103215378 original size:45 final size:45
Alignment explanation
Indices: 103215225--103215492 Score: 294
Period size: 45 Copynumber: 5.9 Consensus size: 45
103215215 GATTCAAGAT
*
103215225 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * *
103215272 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATTC-AAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGA-TCGAAGATAACA
* *
103215317 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
103215362 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
*
103215406 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
** * *
103215451 GATTTGGTGTCTCTGTATTAGACGGGAAGCAGATCAAAGATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATA
103215493 GCAAATATCG
Statistics
Matches: 185, Mismatches: 27, Indels: 20
0.80 0.12 0.09
Matches are distributed among these distances:
43 1 0.01
44 47 0.25
45 106 0.57
46 4 0.02
47 20 0.11
48 6 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:103215435 original size:89 final size:90
Alignment explanation
Indices: 103215225--103215484 Score: 312
Period size: 89 Copynumber: 2.9 Consensus size: 90
103215215 GATTCAAGAT
* * * * *
103215225 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCT-TCATGTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAG--ATAACAGATTTGGCATCTC-TGT-
* * *
103215289 TTTACATC--GAAGCAGATTCAAGATGACA
62 ATTAGA-CGGGAAGCAGATTCAAGAAGACA
*
103215317 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTA
* *
103215382 GACGGGGAGCAGATTGAAGAAG-CA
66 GACGGGAAGCAGATTCAAGAAGACA
* * **
103215406 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTA
103215471 GACGGGAAGCAGAT
66 GACGGGAAGCAGAT
103215485 CAAAGATAGC
Statistics
Matches: 148, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
88 1 0.01
89 79 0.53
90 29 0.20
91 2 0.01
92 37 0.25
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (90 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTA
GACGGGAAGCAGATTCAAGAAGACA
Found at i:103215469 original size:134 final size:136
Alignment explanation
Indices: 103215225--103215481 Score: 328
Period size: 134 Copynumber: 1.9 Consensus size: 136
103215215 GATTCAAGAT
*
103215225 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA-ATAGCAGATCTGACCTTCATGTGA
* *
103215290 TTACATCGAAGCAGATTCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGA
65 TTACATCGAAGCAGATTCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGAAGCAAATCGGA
103215355 GATAACA
130 GATAACA
* * * *
103215362 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAG-A-AGCAGATTTGGCGTCTC-TGT-A
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACCT-TCATGTGA
* * **
103215423 TTAGA-CGGGGAGCAGA-TCGAAGATAACAGATTTGGTGTCTCTGTATTAGACGGGAAGCA
65 TTACATC--GAAGCAGATTC-AAGATAACAGATTTGGCATCTCTGTATTAGACGGGAAGCA
103215482 GATCAAAGAT
Statistics
Matches: 105, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
132 1 0.01
133 6 0.06
134 57 0.54
135 3 0.03
137 38 0.36
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (136 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACCTTCATGTGAT
TACATCGAAGCAGATTCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGAAGCAAATCGGAG
ATAACA
Found at i:103215872 original size:19 final size:19
Alignment explanation
Indices: 103215848--103215957 Score: 190
Period size: 19 Copynumber: 5.9 Consensus size: 19
103215838 ATAATCTTCA
103215848 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103215867 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103215886 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103215905 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
103215922 ATGAT-TGCAATCTTATAT
1 ATGATATGCAATCTTAGAT
103215940 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
103215958 AGATATGATT
Statistics
Matches: 86, Mismatches: 2, Indels: 6
0.91 0.02 0.06
Matches are distributed among these distances:
17 16 0.19
18 15 0.17
19 55 0.64
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:103216272 original size:18 final size:17
Alignment explanation
Indices: 103216249--103216282 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
103216239 TTTCCCTGAT
*
103216249 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
103216267 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
103216283 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:103218327 original size:38 final size:39
Alignment explanation
Indices: 103218213--103218404 Score: 210
Period size: 38 Copynumber: 4.9 Consensus size: 39
103218203 GAATCTAGTC
* * ** *
103218213 ACCAGCACAAAACCTGCGGGACTTTAAGTTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGACTTTAA-CCCGGATATAAT
* *
103218253 ACCAGCACTAGGCCTGCAGGGACTTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGC-GGGACTTTAACCCGGATATAAT
* *
103218293 ACCAGCACGAAGCCTGCGGGA-TTTAAACCGGATATATT
1 ACCAGCACGAAGCCTGCGGGACTTTAACCCGGATATAAT
*
103218331 ACCAGCACGAAGCCTGCGGGA-TATAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGACTTTAACCCGGATATAAT
* * *
103218369 TCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AGCCTGCGGGACTTTAA-CCCGGATA
103218405 CACATCAAAT
Statistics
Matches: 131, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.01
38 66 0.50
39 8 0.06
40 46 0.35
41 10 0.08
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (39 bp):
ACCAGCACGAAGCCTGCGGGACTTTAACCCGGATATAAT
Found at i:103221246 original size:50 final size:50
Alignment explanation
Indices: 103221187--103221289 Score: 188
Period size: 50 Copynumber: 2.1 Consensus size: 50
103221177 TAAATCCGCA
* *
103221187 TACGACTTCTGATGATCTGAAGCTGCTTTTAGACTTTCACGGATCACTTT
1 TACGACTTCTGACGATCTGAAGCTGCTTTTAGACTTTCACGAATCACTTT
103221237 TACGACTTCTGACGATCTGAAGCTGCTTTTAGACTTTCACGAATCACTTT
1 TACGACTTCTGACGATCTGAAGCTGCTTTTAGACTTTCACGAATCACTTT
103221287 TAC
1 TAC
103221290 TTTCTGCTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (50 bp):
TACGACTTCTGACGATCTGAAGCTGCTTTTAGACTTTCACGAATCACTTT
Found at i:103227872 original size:46 final size:46
Alignment explanation
Indices: 103227820--103228047 Score: 298
Period size: 46 Copynumber: 5.0 Consensus size: 46
103227810 TTTGACATGA
* * * * *
103227820 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTTATGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** *
103227866 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCATATCACGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
103227912 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
103227958 TGCCAT-GATATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATAG-TGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
103228004 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTCATATCAG
103228048 AGAGCACACT
Statistics
Matches: 167, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
45 5 0.03
46 161 0.96
47 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:103233166 original size:91 final size:92
Alignment explanation
Indices: 103233027--103233252 Score: 321
Period size: 91 Copynumber: 2.5 Consensus size: 92
103233017 TTTGACATGA
* * * * *
103233027 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGTTGCCATGGTATCTTTCAA
** *
103233091 CCATGGTCTT-TTCATTTCATATCACGT
65 CCATGGTCTTACACATTTCATATCACGC
**
103233118 TGCCATGGTATCTTTCAACCATGGTCTTTTTCATTTCATATCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTTTCAAC
*
103233183 CATGGTCTTACACATTTCATATCAGGC
66 CATGGTCTTACACATTTCATATCACGC
*
103233210 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
103233253 GAGAGCACAC
Statistics
Matches: 119, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
90 4 0.03
91 62 0.52
92 53 0.45
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGC
Found at i:103233253 original size:46 final size:46
Alignment explanation
Indices: 103233027--103233252 Score: 321
Period size: 46 Copynumber: 4.9 Consensus size: 46
103233017 TTTGACATGA
* * * * *
103233027 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
*
103233073 TGCCATGGTATCTTTCAACCATGGTCTT-TTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
**
103233118 TGCCATGGTATCTTTCAACCATGGTCTTTTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
103233164 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
103233210 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
103233253 GAGAGCACAC
Statistics
Matches: 167, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
44 4 0.02
45 37 0.22
46 126 0.75
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:103239790 original size:38 final size:38
Alignment explanation
Indices: 103239709--103239867 Score: 212
Period size: 38 Copynumber: 4.1 Consensus size: 38
103239699 TTTAAGTTCA
* *
103239709 GATATAATACCAGCACTAGGCCTGCGGGACTTTAACCCG
1 GATATAATACCAGCACGAAGCCTGCGGGA-TTTAACCCG
*
103239748 GATATAATACCAGCACGAAGCATGCGGGATTTAACCCG
1 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
*
103239786 GATATATTACCAGCACGAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
* * *
103239824 GATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCG
103239864 GATA
1 GATA
103239868 CACATCAAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.01
38 68 0.63
39 31 0.29
40 8 0.07
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (38 bp):
GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
Found at i:103243560 original size:14 final size:14
Alignment explanation
Indices: 103243541--103243571 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
103243531 CCAGAAAAGT
103243541 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
103243555 AAATCATTTTCCGG
1 AAATCATTTTCCAG
103243569 AAA
1 AAA
103243572 ATGTTTTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:103247695 original size:27 final size:28
Alignment explanation
Indices: 103247611--103247708 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
103247601 CATGAGATTG
* * * *
103247611 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
103247640 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
103247668 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
103247695 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
103247709 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:103247719 original size:27 final size:27
Alignment explanation
Indices: 103247639--103247721 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
103247629 TAAATTGTAC
* *
103247639 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
103247667 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
103247694 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
103247721 A
1 A
103247722 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:103247722 original size:29 final size:27
Alignment explanation
Indices: 103247611--103247722 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
103247601 CATGAGATTG
** * *
103247611 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
103247640 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
103247668 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
103247695 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
103247723 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:103260583 original size:27 final size:28
Alignment explanation
Indices: 103260499--103260595 Score: 133
Period size: 27 Copynumber: 3.5 Consensus size: 28
103260489 CATGAGATTG
* * * *
103260499 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
103260528 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
103260556 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
103260583 GCACTGAGTGTGC
1 GCACTAAGTGTGC
103260596 AGACTTAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
29 18 0.29
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:103260607 original size:27 final size:27
Alignment explanation
Indices: 103260527--103260609 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
103260517 TAAATTGTAC
* *
103260527 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
103260555 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
103260582 AGCACTGAGTGTGCAGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
103260609 A
1 A
103260610 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:103260610 original size:29 final size:27
Alignment explanation
Indices: 103260499--103260610 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
103260489 CATGAGATTG
** * *
103260499 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
103260528 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
103260556 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
103260583 GCACTGAGTGTGCAGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
103260611 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:103262885 original size:23 final size:23
Alignment explanation
Indices: 103262859--103262910 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
103262849 AATTAAAAAG
103262859 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
103262882 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
103262905 ATGAAA
1 ATGAAA
103262911 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:103262973 original size:9 final size:9
Alignment explanation
Indices: 103262961--103262992 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
103262951 ACAAATATTA
103262961 AAAATAAAC
1 AAAATAAAC
103262970 AAAATAAAC
1 AAAATAAAC
103262979 AAAATAAAC
1 AAAATAAAC
103262988 AAAAT
1 AAAAT
103262993 GCACCAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:103267346 original size:23 final size:23
Alignment explanation
Indices: 103267320--103267371 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
103267310 AATTAAAAAG
103267320 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
103267343 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
103267366 ATGAAA
1 ATGAAA
103267372 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:103267434 original size:9 final size:9
Alignment explanation
Indices: 103267422--103267453 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
103267412 ACAAATATTA
103267422 AAAATAAAC
1 AAAATAAAC
103267431 AAAATAAAC
1 AAAATAAAC
103267440 AAAATAAAC
1 AAAATAAAC
103267449 AAAAT
1 AAAAT
103267454 GCACCAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:103269001 original size:7 final size:7
Alignment explanation
Indices: 103268991--103269024 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
103268981 TCTTAAATTT
103268991 CAAACCC
1 CAAACCC
103268998 CAAACCC
1 CAAACCC
103269005 CAAACCC
1 CAAACCC
103269012 CAAACCC
1 CAAACCC
103269019 CAAACC
1 CAAACC
103269025 TAACCTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.44, C:0.56, G:0.00, T:0.00
Consensus pattern (7 bp):
CAAACCC
Found at i:103276037 original size:121 final size:122
Alignment explanation
Indices: 103275888--103276133 Score: 458
Period size: 121 Copynumber: 2.0 Consensus size: 122
103275878 TTAACAAAAG
103275888 AATGCAATTGATACAACAATCATCTTGAAGTTTAAGGGTTGATTTAAACTGGTTAAAACATGTTG
1 AATGCAATTGATACAACAATCATCTTGAAGTTTAAGGGTTGATTTAAACTGGTTAAAACATGTTG
*
103275953 TTAGTCCCTATACTTTGACAAATTTTG-AATTGAATACTTGTACTTTAAAAGTTAAA
66 TTAGTCCCTATACTTTGAAAAATTTTGAAATTGAATACTTGTACTTTAAAAGTTAAA
*
103276009 AATGCAATTGGTACAACAATCATCTTGAAGTTTAAGGGTTGATTTAAACTGGTTAAAACATGTTG
1 AATGCAATTGATACAACAATCATCTTGAAGTTTAAGGGTTGATTTAAACTGGTTAAAACATGTTG
*
103276074 TTAGTCCCTATACTTTGAAAAATTTTGAAATTTAATACTTGTACTTTAAAAGTTAAA
66 TTAGTCCCTATACTTTGAAAAATTTTGAAATTGAATACTTGTACTTTAAAAGTTAAA
103276131 AAT
1 AAT
103276134 TTCATCTTCT
Statistics
Matches: 121, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
121 90 0.74
122 31 0.26
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (122 bp):
AATGCAATTGATACAACAATCATCTTGAAGTTTAAGGGTTGATTTAAACTGGTTAAAACATGTTG
TTAGTCCCTATACTTTGAAAAATTTTGAAATTGAATACTTGTACTTTAAAAGTTAAA
Found at i:103280823 original size:24 final size:23
Alignment explanation
Indices: 103280782--103280826 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
103280772 ATGTCATCAA
**
103280782 CTAAAAATTTTAAAATATATAAT
1 CTAAAAATGATAAAATATATAAT
103280805 CTAAAAATGATAAATATATATA
1 CTAAAAATGATAAA-ATATATA
103280827 TATAGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (23 bp):
CTAAAAATGATAAAATATATAAT
Found at i:103282219 original size:16 final size:17
Alignment explanation
Indices: 103282198--103282233 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
103282188 GGATGAAAGA
*
103282198 TAAATATATTTATT-AT
1 TAAATATAATTATTAAT
103282214 TAAATATAATTATTAAT
1 TAAATATAATTATTAAT
103282231 TAA
1 TAA
103282234 TGAAATGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TAAATATAATTATTAAT
Found at i:103287458 original size:15 final size:15
Alignment explanation
Indices: 103287438--103287466 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
103287428 AAGTTTTGGT
103287438 CTTTTGTCTCAGCAG
1 CTTTTGTCTCAGCAG
103287453 CTTTTGTCTCAGCA
1 CTTTTGTCTCAGCA
103287467 ACCAAGCGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.28, G:0.17, T:0.41
Consensus pattern (15 bp):
CTTTTGTCTCAGCAG
Found at i:103290433 original size:12 final size:11
Alignment explanation
Indices: 103290402--103290427 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
103290392 TCCTCAGTTC
103290402 AAAACAAAAAA
1 AAAACAAAAAA
103290413 AAAACAAAAAA
1 AAAACAAAAAA
103290424 AAAA
1 AAAA
103290428 GGAAAAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAACAAAAAA
Found at i:103291879 original size:18 final size:18
Alignment explanation
Indices: 103291856--103291894 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
103291846 TCGATATTTT
* *
103291856 TATTATATCAATTTAAAA
1 TATTATATAAATATAAAA
103291874 TATTATATAAATATAAAA
1 TATTATATAAATATAAAA
103291892 TAT
1 TAT
103291895 GATAATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TATTATATAAATATAAAA
Found at i:103313806 original size:15 final size:15
Alignment explanation
Indices: 103313786--103313815 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
103313776 GGGACCAACT
103313786 TGGTTGATGGGATAC
1 TGGTTGATGGGATAC
103313801 TGGTTGATGGGATAC
1 TGGTTGATGGGATAC
103313816 AAGTTTAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.40, T:0.33
Consensus pattern (15 bp):
TGGTTGATGGGATAC
Found at i:103316651 original size:31 final size:31
Alignment explanation
Indices: 103316585--103316654 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
103316575 AGAAAACAAT
*
103316585 AATTTGGA-TCTTTTAAAAAAGTTAATAATCA
1 AATTT-GACTCTTTTAAAAAAGTTAAGAATCA
* *
103316616 AATTTGACTCTTTTTAAAAAGTTTAAGAGTC-
1 AATTTGACTCTTTTAAAAAAG-TTAAGAATCA
103316647 AATTTGAC
1 AATTTGAC
103316655 AAAAGATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 2 0.06
31 25 0.74
32 7 0.21
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (31 bp):
AATTTGACTCTTTTAAAAAAGTTAAGAATCA
Done.