Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 316 of 333
Found at i:103321221 original size:5 final size:5
Alignment explanation
Indices: 103321211--103321235 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
103321201 TACACGTAGG
103321211 ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT
103321236 TGGACTTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:103323589 original size:26 final size:26
Alignment explanation
Indices: 103323555--103323619 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
103323545 TGGCTATCCA
*
103323555 GAGC-TCCTAATTAAAGGCTCTTCGT
1 GAGCTTCCTAATTAAAAGCTCTTCGT
* *
103323580 GAGCTTCCTAATTAAAAGTTCTTTGT
1 GAGCTTCCTAATTAAAAGCTCTTCGT
* *
103323606 GAACTTCCTGATTA
1 GAGCTTCCTAATTA
103323620 TGACTCTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 4 0.12
26 30 0.88
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (26 bp):
GAGCTTCCTAATTAAAAGCTCTTCGT
Found at i:103323702 original size:26 final size:26
Alignment explanation
Indices: 103323668--103323723 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
103323658 CTTTCTGATA
*
103323668 GGCTTTTTGTGAACTTCCTGATTA-AT
1 GGCTCTTTGTGAACTTCCTG-TTATAT
* *
103323694 GGCTCTTTGTGAGCTTTCTGTTATAT
1 GGCTCTTTGTGAACTTCCTGTTATAT
103323720 GGCT
1 GGCT
103323724 TAAGAGAGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.14, C:0.16, G:0.23, T:0.46
Consensus pattern (26 bp):
GGCTCTTTGTGAACTTCCTGTTATAT
Found at i:103332362 original size:32 final size:32
Alignment explanation
Indices: 103332296--103332363 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 32
103332286 AATTTGTTAA
* * *
103332296 TGTTGGATTCTGAAATTTTAGTTTATTATGTT
1 TGTTGGATTCTAAAATTTTAGTCTATGATGTT
103332328 TGTTGGATTCTAAAATTATTATGTCT-TGAT-TT
1 TGTTGGATTCTAAAATT-TTA-GTCTATGATGTT
103332360 TGTT
1 TGTT
103332364 AGATATTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
32 22 0.71
33 6 0.19
34 3 0.10
ACGTcount: A:0.22, C:0.04, G:0.18, T:0.56
Consensus pattern (32 bp):
TGTTGGATTCTAAAATTTTAGTCTATGATGTT
Found at i:103332389 original size:27 final size:27
Alignment explanation
Indices: 103332359--103332431 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
103332349 TGTCTTGATT
103332359 TTGTTAGATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
103332386 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTCAAGC
*
103332418 TTGTTGGATATTGA
1 TTGTTAGATATTGA
103332432 AATGATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 14 0.36
32 25 0.64
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:103332411 original size:32 final size:32
Alignment explanation
Indices: 103332372--103332432 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
103332362 TTAGATATTG
103332372 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
* *
103332404 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTCAAGCTTGTTAGATATTGAA
103332433 ATGATTGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (32 bp):
ATTATGTTTCAAGCTTGTTAGATATTGAATTT
Found at i:103333641 original size:14 final size:14
Alignment explanation
Indices: 103333622--103333688 Score: 89
Period size: 14 Copynumber: 4.7 Consensus size: 14
103333612 CCAGAAAAGT
103333622 AAATTATTTTCCAG
1 AAATTATTTTCCAG
103333636 AAATTATTTTCCAGG
1 AAATTATTTTCCA-G
*
103333651 AAATCATTTTCCAG
1 AAATTATTTTCCAG
* *
103333665 AAATCATTTTCCGG
1 AAATTATTTTCCAG
*
103333679 AAAATATTTT
1 AAATTATTTT
103333689 ACCTGCAAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
14 35 0.73
15 13 0.27
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (14 bp):
AAATTATTTTCCAG
Found at i:103333659 original size:29 final size:28
Alignment explanation
Indices: 103333622--103333681 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 28
103333612 CCAGAAAAGT
* *
103333622 AAATTATTTTCCAGAAATTATTTTCCAGG
1 AAATCATTTTCCAGAAATCATTTTCC-GG
103333651 AAATCATTTTCCAGAAATCATTTTCCGG
1 AAATCATTTTCCAGAAATCATTTTCCGG
103333679 AAA
1 AAA
103333682 ATATTTTACC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 5 0.17
29 24 0.83
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (28 bp):
AAATCATTTTCCAGAAATCATTTTCCGG
Found at i:103333683 original size:29 final size:28
Alignment explanation
Indices: 103333626--103333688 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 28
103333616 AAAAGTAAAT
*
103333626 TATTTTCCAGAAATTATTTTCCAGGAAA
1 TATTTTCCAGAAATCATTTTCCAGGAAA
103333654 TCATTTTCCAGAAATCATTTTCC-GGAAAA
1 T-ATTTTCCAGAAATCATTTTCCAGG-AAA
103333683 TATTTT
1 TATTTT
103333689 ACCTGCAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 8 0.25
29 24 0.75
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (28 bp):
TATTTTCCAGAAATCATTTTCCAGGAAA
Found at i:103334711 original size:15 final size:16
Alignment explanation
Indices: 103334686--103334732 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
103334676 TTTAAATATT
103334686 TATATTATATTATTTTA
1 TATATT-TATTATTTTA
103334703 -ATATTTATTATTTTTA
1 TATATTTATTA-TTTTA
*
103334719 TATATTTTTTATTT
1 TATATTTATTATTT
103334733 ATCAAACTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 5 0.19
16 13 0.48
17 9 0.33
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TATATTTATTATTTTA
Found at i:103334723 original size:17 final size:17
Alignment explanation
Indices: 103334686--103334732 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
103334676 TTTAAATATT
103334686 TATATTATATTA-TTTTA
1 TATATT-TATTATTTTTA
103334703 -ATATTTATTATTTTTA
1 TATATTTATTATTTTTA
*
103334719 TATATTTTTTATTT
1 TATATTTATTATTT
103334733 ATCAAACTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 5 0.19
16 10 0.37
17 12 0.44
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TATATTTATTATTTTTA
Found at i:103341394 original size:22 final size:23
Alignment explanation
Indices: 103341349--103341399 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
103341339 AAAGGTGTTC
103341349 TTTTTAAAACACAAATTAACAAT
1 TTTTTAAAACACAAATTAACAAT
*
103341372 TTTTTAAAACATAAATTAA-AAT
1 TTTTTAAAACACAAATTAACAAT
103341394 TATTTT
1 T-TTTT
103341400 TTTATGCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTTTAAAACACAAATTAACAAT
Found at i:103341925 original size:30 final size:29
Alignment explanation
Indices: 103341886--103341965 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
103341876 GAACTGAATC
*
103341886 AAATCAAAGTTTTATATATAAAATTGCACA
1 AAATCAAAG-TTCATATATAAAATTGCACA
* * *
103341916 AAATTAAAGTTCATATATAAAGTTGCATA
1 AAATCAAAGTTCATATATAAAATTGCACA
* *
103341945 TTAAACCAAAGTTTATATATA
1 --AAATCAAAGTTCATATATA
103341966 GTTTTAAGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 17 0.41
30 8 0.20
31 16 0.39
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (29 bp):
AAATCAAAGTTCATATATAAAATTGCACA
Found at i:103356365 original size:44 final size:42
Alignment explanation
Indices: 103356305--103356392 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 42
103356295 AAATTTAAAT
* *
103356305 TTAAATTCTAACTATTTTTAAATGTATAATTATCACAACTTCTA
1 TTAAATTATAACTATTTTTAAATGTA-AACTATCA-AACTTCTA
* *
103356349 TTAAATTATAATTATTTTTAAATGTAAACTATCAAACTTTTA
1 TTAAATTATAACTATTTTTAAATGTAAACTATCAAACTTCTA
103356391 TT
1 TT
103356393 TTGTTCAACT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 9 0.22
43 7 0.17
44 24 0.60
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (42 bp):
TTAAATTATAACTATTTTTAAATGTAAACTATCAAACTTCTA
Found at i:103364142 original size:24 final size:24
Alignment explanation
Indices: 103364109--103364155 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
103364099 ATTTGTAAAT
103364109 GGGCTAATTGGGTTTAGTTTGTTG
1 GGGCTAATTGGGTTTAGTTTGTTG
*
103364133 GGGCTGATTGGGTTTAGTTTGTT
1 GGGCTAATTGGGTTTAGTTTGTT
103364156 TGGGTTATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.11, C:0.04, G:0.38, T:0.47
Consensus pattern (24 bp):
GGGCTAATTGGGTTTAGTTTGTTG
Found at i:103364736 original size:44 final size:44
Alignment explanation
Indices: 103364673--103365903 Score: 436
Period size: 44 Copynumber: 28.6 Consensus size: 44
103364663 GATCTACACT
* * *
103364673 ACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* * *
103364717 ACTGTAATCTCAGGGAGATAGGAT--TACTAGCTTCAATCTG-T--
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-TTTCAATCTGCTCC
* ** * * *
103364758 --TGTAATCTCAGGGAGATAAGAT-C-TGA-CACGATCTACTCT
1 ACTGTAATCTCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* * *
103364797 ACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* * *
103364841 ACTGTAATCTCAGGGAGATAGGAT--TACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-TTTCAATCTGCTCC
* * * ** * * **
103364885 GCTGTAATCTCAGGAAGATAAGAT-C-TGA-CACGATCTACTAT
1 ACTGTAATCTCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
** *
103364926 ACTGTAA-CTTCAAAGAGATAAGATCCTTTATTTTAATCTGCTCC
1 ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* * *
103364970 ACTGTAATCTCAGGGAGATAGGAT--TACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-TTTCAATCTGCTCC
* ** ** *
103365014 GCTGTAATCTCAGGGAGATAAGAT-CTGAAATTCTTCGGTCTGTTCC
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-T-TTCAATCTGCTCC
* * * * * *
103365060 ACTGTAATCTCAGGGAAATAAGA-CC-TGA-TGCGATCTACTCT
1 ACTGTAATCTCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* ** * *
103365101 ACTGTAA-CTTTAGATAGATAAGATCCTTTATTTTAATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* * * *
103365145 ACTGTAATCTCAAGGAGATAGGAT--TACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-TTTCAATCTGCTCC
* ** ** **
103365189 GCTGTAATCTCAGGGAGATAAGAT-CTGAAATTCTTCGGTCTATTCC
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-T-TTCAATCTGCTCC
* ** * * *
103365235 ACTGTAATCTCAGGGAAATAAGA-CC--TGGTGCGATC-GACTCT
1 ACTGTAATCTCAGGGAGATAAGATCCTTTATTTCAATCTG-CTCC
* * * **
103365276 ACTGTAA-CTTCAGAGAGATAAGATTC-TTAGTTTTAATCCACTCC
1 ACTGTAATC-TCAGGGAGATAAGATCCTTTA-TTTCAATCTGCTCC
* * *
103365320 ACTGTAATATCAGGGAGAT-AGAAT--TACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAG-ATCCT-TTA-TTTCAATCTGCTCC
* ** * *
103365364 GCTGTAATCTCAGGGAGATAAGAT-CTGAAATTCTTCAGTCTGTTCC
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-T-TTCAATCTGCTCC
* * ** * * **
103365410 ACTGTAATCTAAGGGAAATAAGA-CC--TGGTGCGATCTGCTTT
1 ACTGTAATCTCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* *
103365451 ACTGTAA-CTTCAGAGAGATAAGATCC----TTT-AATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* * *
103365490 ACTGTAATCTCAGGGAGATAGGAT--TACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-TTTCAATCTGCTCC
* ** * *
103365534 GCTGTAATCTCAGGGAGATAAGAT-CTGAAATTCTTCAGTCTGTTCC
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-T-TTCAATCTGCTCC
* ** * * *
103365580 ACTGTAATCTCAGGGAAATAAGA-CC--TGGTGCGATCTGCTCT
1 ACTGTAATCTCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* * *
103365621 ACTGTAA-CTTCAGAGAGATAAGATCC----TTT-AATCCGCTCA
1 ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
** * *
103365660 ACTGTAATCTCAGGGAGATGGGATTACTATA-TTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGA-TCCTTTATTTCAATCTGCTCC
* * * ** *
103365704 GCTGTAATCTCAGGGAGATAAGATCTGCAATT-CTTCGGTCTGTTCC
1 ACTGTAATCTCAGGGAGATAAGATC--C-TTTATTTCAATCTGCTCC
* ** * * * *
103365750 ACTGTAATCTCAGGGAAATAAGA-CC--TGGTGCGATCTACTCT
1 ACTGTAATCTCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* ** * *
103365791 ACTGTAA-CTTCAGAGAGATAAGATCCTTGGTTTTAATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
* *
103365835 ACTGTAATCTCAGGGAGATAGGATTACC-ATA-TTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGA-T-CCTTTATTTCAATCTGCTCC
*
103365879 GCTGTAATCTCAGGGAGATAAGATC
1 ACTGTAATCTCAGGGAGATAAGATC
103365904 TGCAATTCTT
Statistics
Matches: 865, Mismatches: 237, Indels: 172
0.68 0.19 0.14
Matches are distributed among these distances:
36 5 0.01
37 1 0.00
38 1 0.00
39 72 0.08
40 14 0.02
41 174 0.20
42 16 0.02
43 26 0.03
44 376 0.43
45 18 0.02
46 162 0.19
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
ACTGTAATCTCAGGGAGATAAGATCCTTTATTTCAATCTGCTCC
Found at i:103364798 original size:129 final size:127
Alignment explanation
Indices: 103364662--103365041 Score: 644
Period size: 129 Copynumber: 3.0 Consensus size: 127
103364652 AAACCTGATG
103364662 CGATCTAC-ACTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC
1 CGATCTACTACTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC
103364726 TCAGGGAGATAGGATTACTAGCTTCAATCTG-T-TGTAATCTCAGGGAGATAAGATCTGACA
66 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGTAATCTCAGGGAGATAAGATCTGACA
103364786 CGATCTACT-CTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC
1 CGATCTACTACTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC
*
103364850 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGAAGATAAGATCTGACA
66 TCAGGGAGATAGGATTACTAGCTTCAATCTGCT---CTGTAATCTCAGGGAGATAAGATCTGACA
* *
103364915 CGATCTACTA-TACTGTAACTTCAAAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATC
1 CGATCTACTACTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC
103364979 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
66 TCAGGGAGATAGGATTACTAGCTTCAATCTGCT---CTGTAATCTCAGGGAGATAAGATCTGA
103365042 AATTCTTCGG
Statistics
Matches: 245, Mismatches: 4, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
124 94 0.38
125 1 0.00
129 150 0.61
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (127 bp):
CGATCTACTACTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC
TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGTAATCTCAGGGAGATAAGATCTGACA
Found at i:103365106 original size:175 final size:174
Alignment explanation
Indices: 103364877--103365951 Score: 1718
Period size: 175 Copynumber: 6.2 Consensus size: 174
103364867 CTAGCTTCAA
* * * *** * *
103364877 TCTGCTCCGCTGTAATCTCA-GGAAGATAAGATCTGACACGATCTACTATACTGTAACTTCAAAG
1 TCTGTTCCACTGTAATCTCAGGGAA-ATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAG
*
103364941 AGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAA
65 AGATAAGATCC-TTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAA
103365006 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
129 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
* * *
103365052 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGATA
1 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGA
*
103365117 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTCAAT
66 GATAAGATCC-TTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAAT
103365182 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
130 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
* *
103365227 TCTATTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCGACTCTACTGTAACTTCAGAGA
1 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGA
* * * *
103365292 GATAAGATTCTTAGTTTTAATCCACTCCACTGTAATATCAGGGAGATAGAATTACTAGCTTCAAT
66 GATAAGATCCTTA-TTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAAT
*
103365357 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAG
130 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
* * *
103365402 TCTGTTCCACTGTAATCTAAGGGAAATAAGACCTGGTGCGATCTGCTTTACTGTAACTTCAGAGA
1 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGA
103365467 GATAAGATCC----TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATC
66 GATAAGATCCTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATC
*
103365528 TGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAG
131 TGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
*
103365572 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGA
1 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGA
* * **
103365637 GATAAGATCC----TTTAATCCGCTCAACTGTAATCTCAGGGAGATGGGATTACTATATTCAATC
66 GATAAGATCCTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATC
*
103365698 TGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGG
131 TGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
103365742 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGA
1 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGA
* * **
103365807 GATAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACCATATTCAAT
66 GATAAGATCCTT-ATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAAT
*
103365872 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGG
130 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
*
103365917 TCTGTTCCACCGTAATCTCAGGGAAATAAGACCTG
1 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTG
103365952 TATAATGAAC
Statistics
Matches: 849, Mismatches: 44, Indels: 14
0.94 0.05 0.02
Matches are distributed among these distances:
170 328 0.39
174 3 0.00
175 514 0.61
176 4 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (174 bp):
TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGA
GATAAGATCCTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATC
TGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
Found at i:103365828 original size:345 final size:343
Alignment explanation
Indices: 103364831--103365951 Score: 1664
Period size: 345 Copynumber: 3.2 Consensus size: 343
103364821 CCTTTATTTT
* * * * * * * *
103364831 AATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-T--ACTAGCTTCAATCTGCTCCGCTGTAAT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT-TCTTCAGTCTGTTCCACTGTAAT
* *** * * *
103364893 CTCA-GGAAGATAAGATCTGACACGATCTACTATACTGTAACTTCAAAGAGATAAGATCCTTTAT
65 CTCAGGGAA-ATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCC-----
*
103364957 TTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAAT
124 TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAAT
103365022 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTG
189 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTG
* * *
103365087 ATGCGATCTACTCTACTGTAACTTTAGATAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA
254 GTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCC-TT-TTTTAATCCGCTCCACTGTAA
*
103365152 TCTCAAGGAGATAGGATTACTAGCTTC
317 TCTCAGGGAGATAGGATTACTAGCTTC
* *
103365179 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTGTTCCACTGTAATC
*
103365244 TCAGGGAAATAAGACCTGGTGCGATC-GACTCTACTGTAACTTCAGAGAGATAAGATTCTTAGTT
66 TCAGGGAAATAAGACCTGGTGCGATCTG-CTCTACTGTAACTTCAGAGAGATAAGA-TC----CT
* * *
103365308 TTAATCCACTCCACTGTAATATCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAATC
125 TTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATC
* *
103365373 TCAGGGAGATAAGATCTGAAATTCTTCAGTCTGTTCCACTGTAATCTAAGGGAAATAAGACCTGG
190 TCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGG
* *
103365438 TGCGATCTGCTTTACTGTAACTTCAGAGAGATAAGATCC---TTTAATCCGCTCCACTGTAATCT
255 TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTTTTAATCCGCTCCACTGTAATCT
103365500 CAGGGAGATAGGATTACTAGCTTC
320 CAGGGAGATAGGATTACTAGCTTC
103365524 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTGTTCCACTGTAATC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTGTTCCACTGTAATC
103365589 TCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATC
66 TCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATC
* * **
103365654 CGCTCAACTGTAATCTCAGGGAGATGGGATTACTATATTCAATCTGCTCCGCTGTAATCTCAGGG
131 CGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGG
*
103365719 AGATAAGATCTGCAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGAT
196 AGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGAT
103365784 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGG
261 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTT--TTTTAATCCGCTCCACTGTAATCTCAGG
* **
103365849 GAGATAGGATTACCATATTC
324 GAGATAGGATTACTAGCTTC
* * *
103365869 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGTTCCACCGTAATC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTGTTCCACTGTAATC
103365934 TCAGGGAAATAAGACCTG
66 TCAGGGAAATAAGACCTG
103365952 TATAATGAAC
Statistics
Matches: 706, Mismatches: 51, Indels: 35
0.89 0.06 0.04
Matches are distributed among these distances:
340 158 0.22
344 2 0.00
345 286 0.41
346 1 0.00
348 31 0.04
349 1 0.00
350 219 0.31
351 8 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (343 bp):
AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTGTTCCACTGTAATC
TCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATC
CGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGG
AGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGAT
CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTTTTAATCCGCTCCACTGTAATCTCAGGGA
GATAGGATTACTAGCTTC
Found at i:103367013 original size:21 final size:21
Alignment explanation
Indices: 103366987--103367033 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
103366977 GGTATAGCAG
103366987 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
** *
103367008 GATCACTTCATGCCCCATTCT
1 GATCACCACATGCCCCAATCT
103367029 GATCA
1 GATCA
103367034 ATATTTGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.38, G:0.11, T:0.26
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:103367147 original size:10 final size:10
Alignment explanation
Indices: 103367127--103367158 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
103367117 CCATTTTTAC
103367127 TTTTTCA-TT
1 TTTTTCATTT
103367136 TTTTT-ATTT
1 TTTTTCATTT
103367145 TTTTTCATTT
1 TTTTTCATTT
103367155 TTTT
1 TTTT
103367159 GACTCAAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 1 0.05
9 12 0.57
10 8 0.38
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTCATTT
Found at i:103368024 original size:10 final size:9
Alignment explanation
Indices: 103367987--103368090 Score: 57
Period size: 9 Copynumber: 10.6 Consensus size: 9
103367977 AAACCTCTCC
103367987 TTTTTCTTT
1 TTTTTCTTT
103367996 TTATTT-TTCT
1 TT-TTTCTT-T
103368006 TTTTTCTTT
1 TTTTTCTTT
103368015 TTTTTCCTTT
1 TTTTT-CTTT
103368025 TTTTTGACTTCGAT
1 TTTTT--CTT---T
*
103368039 TTTTTTTATT
1 TTTTTCT-TT
*
103368049 TTTTTGTTT
1 TTTTTCTTT
* *
103368058 TTTTTGTTG
1 TTTTTCTTT
*
103368067 TTTTTGTTT
1 TTTTTCTTT
*
103368076 TTTTTGTGTT
1 TTTTTCT-TT
103368086 TTTTT
1 TTTTT
103368091 TAGTCTGAAC
Statistics
Matches: 80, Mismatches: 5, Indels: 19
0.77 0.05 0.18
Matches are distributed among these distances:
9 38 0.47
10 31 0.39
11 3 0.04
12 1 0.01
13 1 0.01
14 6 0.08
ACGTcount: A:0.04, C:0.07, G:0.08, T:0.82
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:103368085 original size:17 final size:17
Alignment explanation
Indices: 103368038--103368088 Score: 75
Period size: 18 Copynumber: 2.9 Consensus size: 17
103368028 TTGACTTCGA
* *
103368038 TTTTTTTTATTTTTTTG
1 TTTTTTTTGTGTTTTTG
103368055 TTTTTTTTGTTGTTTTTG
1 TTTTTTTTG-TGTTTTTG
103368073 TTTTTTTTGTGTTTTT
1 TTTTTTTTGTGTTTTT
103368089 TTTAGTCTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 15 0.48
18 16 0.52
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (17 bp):
TTTTTTTTGTGTTTTTG
Found at i:103370163 original size:19 final size:20
Alignment explanation
Indices: 103370134--103370182 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
103370124 CACTTCGTGA
* *
103370134 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
103370153 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
103370173 AAATG-AATGC
1 AAATGTAATGC
103370183 CTAGAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:103372393 original size:3 final size:3
Alignment explanation
Indices: 103372385--103372417 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
103372375 TTAAAAGAGT
103372385 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
103372418 TGAAATTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:103373431 original size:15 final size:15
Alignment explanation
Indices: 103373394--103373441 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
103373384 AATTTGTATA
103373394 TTAATAATAT-T-A-
1 TTAATAATATATAAT
*
103373406 TTATTAA-ATATAAT
1 TTAATAATATATAAT
103373420 TTAATAATATATAAT
1 TTAATAATATATAAT
*
103373435 TTCATAA
1 TTAATAA
103373442 ATTCTTGATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 2 0.07
12 7 0.24
13 1 0.03
14 6 0.21
15 13 0.45
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
TTAATAATATATAAT
Found at i:103373496 original size:85 final size:87
Alignment explanation
Indices: 103373365--103373596 Score: 375
Period size: 86 Copynumber: 2.7 Consensus size: 87
103373355 TAATTATTAC
* * *
103373365 TAATAAATTTTCTTATATGAATTTGTAT-ATTAATAAT-ATTATTATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTA-AATAATTAATATTAAATATAATTTAATAAT
103373428 -ATATAATTTCATAAATTCTTGA
65 GATATAATTTCATAAATTCTTGA
103373450 TAATAAATTTTC-TATATGAATTTATATAATTTAAATAATTAATATTAAATATAATTTAATAATG
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAATAATTAATATTAAATATAATTTAATAATG
103373514 ATATAATTTCATAAATTCTTGA
66 ATATAATTTCATAAATTCTTGA
*
103373536 TAATAAA-TTTCTTATATGAATTTATATAATTTAAAAAATTAATATTAAATATAATTGTAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAATAATTAATATTAAATATAATT-TAAT
103373597 GGCCAAATTC
Statistics
Matches: 138, Mismatches: 4, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
84 17 0.12
85 45 0.33
86 72 0.52
87 4 0.03
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (87 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAATAATTAATATTAAATATAATTTAATAATG
ATATAATTTCATAAATTCTTGA
Found at i:103373575 original size:45 final size:44
Alignment explanation
Indices: 103373427--103373575 Score: 139
Period size: 45 Copynumber: 3.4 Consensus size: 44
103373417 AATTTAATAA
* *
103373427 TATATAATTTCATAAATTCTTGATAATAAATTTTCTATATGAATT
1 TATATAATTTAAAAAATTCTTGATAATAAATTTT-TATATGAATT
* * *
103373472 TATATAATTTAAATAA---TTAATATTAAATATAATTTA-AT-AA-T
1 TATATAATTTAAAAAATTCTTGATAATAAAT-T--TTTATATGAATT
* * *
103373513 GATATAATTTCATAAATTCTTGATAATAAATTTCTTATATGAATT
1 TATATAATTTAAAAAATTCTTGATAATAAATTT-TTATATGAATT
103373558 TATATAATTTAAAAAATT
1 TATATAATTTAAAAAATT
103373576 AATATTAAAT
Statistics
Matches: 80, Mismatches: 14, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
41 14 0.17
42 15 0.19
43 6 0.08
44 14 0.17
45 31 0.39
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (44 bp):
TATATAATTTAAAAAATTCTTGATAATAAATTTTTATATGAATT
Found at i:103384799 original size:22 final size:21
Alignment explanation
Indices: 103384774--103384826 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
103384764 TCTTTAAAAT
103384774 ATTTTTATATTTACTTTTTAAA
1 ATTTTTATATTT-CTTTTTAAA
* * * *
103384796 ATTTTCAAGATTTTTTTTTATA
1 ATTTT-TATATTTCTTTTTAAA
103384818 ATTTTTATA
1 ATTTTTATA
103384827 ATTAAGACTA
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
21 2 0.08
22 17 0.71
23 5 0.21
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (21 bp):
ATTTTTATATTTCTTTTTAAA
Found at i:103390961 original size:17 final size:17
Alignment explanation
Indices: 103390935--103390968 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
103390925 CCACACATAT
*
103390935 TTTTTCTTTTTATATAA
1 TTTTTATTTTTATATAA
*
103390952 TTTTTATTTTTTTATAA
1 TTTTTATTTTTATATAA
103390969 AAATATAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTATTTTTATATAA
Found at i:103392375 original size:26 final size:26
Alignment explanation
Indices: 103392324--103392383 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
103392314 GGATTAGATT
* *
103392324 TAAAAATTAAAAAAGATTTAAGTTAA
1 TAAAAATTAAAAAAGATTAAAATTAA
* *
103392350 TAAAAATTCAAAAATATTAAAATTAA
1 TAAAAATTAAAAAAGATTAAAATTAA
*
103392376 -AAGAATTA
1 TAAAAATTA
103392384 TATTTACAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
25 6 0.21
26 22 0.79
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (26 bp):
TAAAAATTAAAAAAGATTAAAATTAA
Found at i:103394810 original size:16 final size:16
Alignment explanation
Indices: 103394789--103394848 Score: 102
Period size: 16 Copynumber: 3.8 Consensus size: 16
103394779 TTTGGTTCGC
103394789 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
103394805 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAGG
103394821 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
103394837 TGTATTAGATTA
1 TGTATTGGATTA
103394849 AATGTGTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:103394825 original size:32 final size:32
Alignment explanation
Indices: 103394789--103394856 Score: 111
Period size: 32 Copynumber: 2.1 Consensus size: 32
103394779 TTTGGTTCGC
*
103394789 TGTATTGGATTAGAGGTGTATTGGATTAGAA-G
1 TGTATTGGATTAGAGGTGTATTAGATTA-AATG
103394821 TGTATTGGATTAGAGGTGTATTAGATTAAATG
1 TGTATTGGATTAGAGGTGTATTAGATTAAATG
103394853 TGTA
1 TGTA
103394857 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 2 0.06
32 32 0.94
ACGTcount: A:0.29, C:0.00, G:0.31, T:0.40
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTAGATTAAATG
Found at i:103394855 original size:16 final size:16
Alignment explanation
Indices: 103394789--103394856 Score: 84
Period size: 16 Copynumber: 4.2 Consensus size: 16
103394779 TTTGGTTCGC
*
103394789 TGTATTGGATTAGAGG
1 TGTATTGGATTAAAGG
103394805 TGTATTGGATTAGAA-G
1 TGTATTGGATTA-AAGG
*
103394821 TGTATTGGATTAGAGG
1 TGTATTGGATTAAAGG
* *
103394837 TGTATTAGATTAAATG
1 TGTATTGGATTAAAGG
103394853 TGTA
1 TGTA
103394857 ATAGCAAATC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
15 1 0.02
16 43 0.96
17 1 0.02
ACGTcount: A:0.29, C:0.00, G:0.31, T:0.40
Consensus pattern (16 bp):
TGTATTGGATTAAAGG
Found at i:103395180 original size:157 final size:157
Alignment explanation
Indices: 103394986--103395295 Score: 539
Period size: 157 Copynumber: 2.0 Consensus size: 157
103394976 CCCTTAGCAT
* *
103394986 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
103395051 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
103395116 TTTAATAAAATTCTTAATAATTACCAA
131 TTTAATAAAATTCTTAATAATTACCAA
* * *
103395143 AAATTTGTTTTGATAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
103395208 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
103395273 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
103395296 ATATTCTTAT
Statistics
Matches: 144, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
157 144 1.00
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.47
Consensus pattern (157 bp):
AAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAA
Found at i:103396191 original size:13 final size:13
Alignment explanation
Indices: 103396173--103396202 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
103396163 CAATCAGCTA
103396173 AATTCAGAAAAAC
1 AATTCAGAAAAAC
103396186 AATTCAGAAAAAC
1 AATTCAGAAAAAC
103396199 AATT
1 AATT
103396203 ACATGACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (13 bp):
AATTCAGAAAAAC
Found at i:103403150 original size:85 final size:78
Alignment explanation
Indices: 103403058--103404144 Score: 525
Period size: 75 Copynumber: 13.9 Consensus size: 78
103403048 CTGTTTTAAA
* * * *
103403058 AAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCT-TGGCTCACGTGTTGAGTCACTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACAC-TG-AG-GT-ACTTTCAAT
103403122 TTCTGTTTTTATGTCTGTTTT
62 TTCTG---TTATGTCT-TTTT
** * *
103403143 TTAAATCAACTCATATTGCG-GAAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTG
1 AAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTC-GGGCACACTGAGGTACTTTCAATTT
103403207 CTGTT-TGTC-----
64 CTGTTATGTCTTTTT
* * * * *
103403216 AAAAATCAACTCATTTTGCGGGAGGTGAGTTGAGCCTCGGGGCACACCGAGGTATTTTCAAATTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACACTGAGGTACTTTCAATTTC
**
103403281 ---TA---CTTTCAA
65 TGTTATGTCTTT-TT
* * * *
103403290 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCAT-TGGCTCACGTGTTGAGTCACTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACAC-TG-AG-GT-ACTTTCAAT
103403354 TTCTGTTTTTATGTCTGTTTT
62 TTCTG---TTATGTCT-TTTT
** * * * *
103403375 TTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTGC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACACTGAGGTACTTTCAATTTC
*
103403440 TGTT-TG-----TA
65 TGTTATGTCTTTTT
* * * *
103403448 AAAAATCAACTCATGTTGTGGGAGGTGAGTTGAGCCTCGGGTCACA-TGTCAAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACACTG---AGGTACTTTCAAT
*
103403512 TTC-----TG-CTTTTCA
62 TTCTGTTATGTCTTTT-T
* *
103403524 AAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-ACATGCTGAGGTAATTGCAATT
1 AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACA--CTGAGGTACTTTCAATT
* * **
103403588 TAT-AT-TGTC---AA
63 TCTGTTATGTCTTTTT
* * * *
103403599 AAAAAT-AACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GCAC--ACTGAGGTACTTTCAATT
* *
103403663 TCTGTCTCTG--TTTGT
63 TCTGT-TATGTCTTTTT
* * * * *
103403678 CAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGCTAAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACACTGAGGTACTTTCAATTTC
**
103403743 TGTT-TGTC---AA
65 TGTTATGTCTTTTT
* * * *
103403753 AAAAACCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACACTGAGGTACTTTCAATTTC
103403818 TGTT-TGT-TTTTAT
65 TGTTATGTCTTTT-T
* * * *
103403831 AAAAA-CAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACGCTGAGGTATTTTCCAT
1 AAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-C--ACACTGAGGTACTTTCAAT
* * *
103403895 TTCTGTTCTTTAATTTCTACGGCT
62 TTCTGTTATGT-CTTT-T-----T
* * * * *
103403919 CAAAAAAATCAGCTCATATTGCGAAAGGTGAGTTGAGCCT-TGACTGACACGTTGAGGTATTTTC
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGC--ACAC--TGAGGTACTTTC
* **
103403983 AATTTC-----TGCCTTTCAA
59 AATTTCTGTTATGTCTTT-TT
* * * *
103403999 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACACTGAGGTACTTTCAATTTC
****
103404064 TGTCT-T-TC-AAAA
65 TGT-TATGTCTTTTT
* * * * * **
103404076 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTGGGACACGCTGAGATAATTTTTATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACACTGAGGTACTTTCAATTTC
103404141 TGTT
65 TGTT
103404145 TCAAAATTCA
Statistics
Matches: 807, Mismatches: 107, Indels: 185
0.73 0.10 0.17
Matches are distributed among these distances:
68 1 0.00
70 1 0.00
71 2 0.00
72 11 0.01
73 128 0.16
74 39 0.05
75 141 0.17
76 19 0.02
77 138 0.17
78 63 0.08
79 16 0.02
80 62 0.08
81 4 0.00
82 2 0.00
83 27 0.03
84 5 0.01
85 74 0.09
86 7 0.01
87 11 0.01
88 1 0.00
89 4 0.00
90 1 0.00
91 49 0.06
92 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (78 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACACTGAGGTACTTTCAATTTCT
GTTATGTCTTTTT
Found at i:103403268 original size:73 final size:74
Alignment explanation
Indices: 103403145--103403901 Score: 681
Period size: 73 Copynumber: 9.9 Consensus size: 74
103403135 TCTGTTTTTT
*
103403145 AAATCAACTCATATTGCG-GAAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTGCT
1 AAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTCT
103403209 GTTTGTC-AA
65 GTTTGTCAAA
* * * * *
103403218 AAATCAACTCATTTTGCGGGAGGTGAGTTGAGCCTCGGGGCACACCGAGGTATTTTCAAATTCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTCTG
*
103403283 CTT-TCAAAA
66 TTTGTC-AAA
* * * * *
103403292 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCAT--TGGCTCACGTGTTGAGTCACTTTCAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACAC-TG-AG-GT-ATTTTCAATT
***
103403355 TCTGTTTTTATGTCTGTTTTTT
62 TCTG---TT-TGTC-----AAA
* * *
103403377 AAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTGCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTCTG
103403442 TTTGT-AAA
66 TTTGTCAAA
* * * *
103403450 AAATCAACTCATGTTGTGGGAGGTGAGTTGAGCCTCGGGTCACA-TGTCAAGGTATTTTCAATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTG---AGGTATTTTCAATTT
103403514 CTGCTTT-TCAAA
63 CTG-TTTGTCAAA
* ** * * *
103403526 AGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTGCAATTTAT
1 A-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTCT
*
103403591 -ATTGTCAAAA
65 GTTTGTC-AAA
* ** *
103403601 AAAT-AACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC--ACTGAGGTATTTTCAATTTC
***
103403665 TGTCTCTGTTTGTCA
64 TGT-T-TG--TCAAA
* * * *
103403680 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGCTAAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTCTG
103403745 TTTGTCAAAA
66 TTTGTC-AAA
* * * *
103403755 AAACCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTCTG
*
103403820 TTTGTTTTTATAA
66 TTTG---TCA-AA
* * * *
103403833 AAA-CAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACGCTGAGGTATTTTCCATTT
1 AAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGC--ACACTGAGGTATTTTCAATTT
103403897 CTGTT
63 CTGTT
103403902 CTTTAATTTC
Statistics
Matches: 564, Mismatches: 77, Indels: 79
0.78 0.11 0.11
Matches are distributed among these distances:
72 10 0.02
73 137 0.24
74 42 0.07
75 122 0.22
76 20 0.04
77 41 0.07
78 64 0.11
79 9 0.02
80 62 0.11
81 2 0.00
83 12 0.02
84 2 0.00
85 34 0.06
86 2 0.00
87 5 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (74 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTCAATTTCTG
TTTGTCAAA
Found at i:103403473 original size:232 final size:234
Alignment explanation
Indices: 103403051--103403559 Score: 869
Period size: 232 Copynumber: 2.2 Consensus size: 234
103403041 TTCATTTCTG
* * *
103403051 TTTTAAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATTGGCTCACGTGTTGAGTCACT
103403116 TTCAATTTCTGTTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGAAGGTGAGTTGAGCCTC
66 TTCAATTTCTGTTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGAAGGTGAGTTGAGCCTC
* *
103403181 GGGGCACACTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATTTTGCGGGAGGTGAGT
131 GGGGCACACTGAGGTATTTTCAATTGCTGTTTGTAAAAAATCAACTCATGTTGCGGGAGGTGAGT
*
103403246 TGAGCCTCGGGGCACA-CCGAGGTATTTTCAAATTCTAC
196 TGAGCCTCGGGGCACAGCCAAGGTATTTTCAAATTCTAC
103403284 -TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATTGGCTCACGTGTTGAGTCACT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATTGGCTCACGTGTTGAGTCACT
*
103403348 TTCAATTTCTGTTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTC
66 TTCAATTTCTGTTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGAAGGTGAGTTGAGCCTC
* *
103403413 GGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTAAAAAATCAACTCATGTTGTGGGAGGTGAGT
131 GGGGCACACTGAGGTATTTTCAATTGCTGTTTGTAAAAAATCAACTCATGTTGCGGGAGGTGAGT
* * * *
103403478 TGAGCCTCGGGTCACATGTCAAGGTATTTTCAATTTCTGC
196 TGAGCCTCGGGGCACA-GCCAAGGTATTTTCAAATTCTAC
*
103403518 TTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
103403560 CTCGGGACAT
Statistics
Matches: 259, Mismatches: 14, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
232 201 0.78
234 18 0.07
235 40 0.15
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (234 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATTGGCTCACGTGTTGAGTCACT
TTCAATTTCTGTTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGAAGGTGAGTTGAGCCTC
GGGGCACACTGAGGTATTTTCAATTGCTGTTTGTAAAAAATCAACTCATGTTGCGGGAGGTGAGT
TGAGCCTCGGGGCACAGCCAAGGTATTTTCAAATTCTAC
Found at i:103403652 original size:75 final size:74
Alignment explanation
Indices: 103403377--103403899 Score: 545
Period size: 75 Copynumber: 6.9 Consensus size: 74
103403367 TCTGTTTTTT
* *
103403377 AAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTGCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATTTCTG
*
103403442 TTTGT--AAA
65 CTTGTCAAAA
* * * *
103403450 AAATCAACTCATGTTGTGGGAGGTGAGTTGAGCCTCGGGTCACATG-TCAAGGTATTTTCAATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CAC--GCT-GAGGTATTTTCAATTT
*
103403514 CTGCTTTTCAAAA
62 CTGCTTGTCAAAA
* * * * *
103403527 GAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTGCAATTTAT-
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACGCTGAGGTATTTTCAATTTCTG
*
103403591 ATTGTCAAAA
65 CTTGTCAAAA
* *
103403601 AAAT-AACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GCAC--GCTGAGGTATTTTCAATTTC
****
103403665 TGTCTCTGTTTGTCA
63 TG-CT-TG-TCAAAA
* *
103403680 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGCTAAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATTTCTG
*
103403745 TTTGTCAAAA
65 CTTGTCAAAA
* *
103403755 AAACCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATTTCTG
* * *
103403820 TTTGTTTTTATAA
65 CTTG---TCAAAA
* *
103403833 AAA-CAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACGCTGAGGTATTTTCCATTT
1 AAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-C--ACGCTGAGGTATTTTCAATTT
103403897 CTG
62 CTG
103403900 TTCTTTAATT
Statistics
Matches: 379, Mismatches: 48, Indels: 39
0.81 0.10 0.08
Matches are distributed among these distances:
72 3 0.01
73 71 0.19
74 12 0.03
75 121 0.32
76 3 0.01
77 46 0.12
78 60 0.16
79 6 0.02
80 55 0.15
81 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (74 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCAATTTCTGC
TTGTCAAAA
Found at i:103404078 original size:77 final size:75
Alignment explanation
Indices: 103403918--103404260 Score: 397
Period size: 77 Copynumber: 4.6 Consensus size: 75
103403908 TTTCTACGGC
* * * * * *
103403918 TCAAAAAAATCAGCTCATATTGCGAAAGGTGAGTTGAGCCTTGACTGACACGTTGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGACACGCTGAGGTAATTTC
*
103403983 AATTTCTGCCTT
64 AATTTCTGTCTT
*
103403995 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACGCTGAGGTAATTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
103404060 TTTCTGTCTT
66 TTTCTGTCTT
* ** * *
103404070 TCAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTGGGACACGCTGAGATAATTTT
1 TC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
103404135 TATTTCTG--TT
64 AATTTCTGTCTT
* * * * * * * *
103404145 TC--AAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGCTATTTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
103404208 TTTCTGTCTT
66 TTTCTGTCTT
* * *
103404218 TCAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
103404261 AGATACTGAG
Statistics
Matches: 227, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
71 54 0.24
73 4 0.02
75 68 0.30
76 2 0.01
77 99 0.44
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31
Consensus pattern (75 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTGTCTT
Found at i:103404400 original size:88 final size:87
Alignment explanation
Indices: 103404201--103404612 Score: 362
Period size: 88 Copynumber: 4.7 Consensus size: 87
103404191 CGTTGAGCTA
* * * * * *
103404201 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAA-GAT
1 TTTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAATCAC
* *
103404265 A--CTGAGGTGTTTTCCATTTTT
66 ACGCTGAGGTATTTT-CAATTTT
* * * * *
103404286 GTTCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTAAC
1 -TT-TTCAATTTATGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-
103404351 TCACACGCTGAGGTATTTTCAATTTT
62 TCACACGCTGAGGTATTTTCAATTTT
*
103404377 TTTTCAATTTATGT-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
1 TTTTCAATTTATGTCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-ATC
*
103404441 ACACGCCGAGGTATTTTCAATTGATTTTT
64 ACACGCTGAGGTATTTTC-A---A-TTTT
* **
103404470 TTTTCAATTTATG-CTTTGC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTC
1 TTTTCAATTTATGTCTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AATC
** * *
103404532 ACATACCGAGGTATTTTCAAAATCTGT
64 ACACGCTGAGGTATTTTC--AAT-TTT
* *
103404559 TTTACAAATTT-TGT-TTT---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTTC-AATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
103404613 TGGCTCACGT
Statistics
Matches: 283, Mismatches: 23, Indels: 39
0.82 0.07 0.11
Matches are distributed among these distances:
86 2 0.01
87 51 0.18
88 98 0.35
89 26 0.09
90 9 0.03
91 62 0.22
92 15 0.05
93 20 0.07
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (87 bp):
TTTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAATCAC
ACGCTGAGGTATTTTCAATTTT
Found at i:103404638 original size:87 final size:86
Alignment explanation
Indices: 103404398--103404697 Score: 235
Period size: 87 Copynumber: 3.4 Consensus size: 86
103404388 TGTTTGTCAA
* ** *
103404398 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGCTCACATACCGAGGTATATTCAA-
* * * ** * *
103404462 TGATTTTTTTTTCAATTTATGCTTTGC
64 -AATCTATTTTAAAATCTAT--TTT-T
* * * *
103404489 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGGTATATTCAAAA
* *
103404554 TCTGTTTTACAAAT-TTTGTTTT
66 TCTATTTTA-AAATCTAT-TTTT
* * * * * * **
103404576 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGTGTTATATTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGGTATATTCAAAA
**
103404641 TCTATTTTAATGTCTATTTTT
66 TCTATTTTAAAATCTATTTTT
* * *
103404662 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 AAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGC
103404698 TCAGGATCAC
Statistics
Matches: 175, Mismatches: 30, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
86 9 0.05
87 92 0.53
88 3 0.02
89 9 0.05
90 5 0.03
91 57 0.33
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (86 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGGTATATTCAAAA
TCTATTTTAAAATCTATTTTT
Found at i:103405385 original size:18 final size:18
Alignment explanation
Indices: 103405362--103405417 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
103405352 CCACCACCAA
103405362 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
103405380 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
103405392 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
103405410 CTCTACTA
1 CTCCACTA
103405418 CCTACTCCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 12
0.66 0.07 0.27
Matches are distributed among these distances:
12 7 0.24
13 3 0.10
14 1 0.03
16 1 0.03
17 3 0.10
18 14 0.48
ACGTcount: A:0.25, C:0.46, G:0.07, T:0.21
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:103405388 original size:30 final size:30
Alignment explanation
Indices: 103405352--103405450 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
103405342 CTAGCCTTTG
103405352 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
103405382 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * * * *
103405412 CTACTACCTACTCCACTAGTCACACTTACT
1 CCACCACCAACTCCACTAGCCACACTTGCT
103405442 CCACCACCA
1 CCACCACCA
103405451 CTTGTACCTA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.27, C:0.48, G:0.05, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:103406054 original size:25 final size:25
Alignment explanation
Indices: 103405929--103406147 Score: 125
Period size: 25 Copynumber: 8.9 Consensus size: 25
103405919 TTTTTTTTGT
*
103405929 TATTAT-TATAT-TTTTTAATATTA
1 TATTATGTATATATTTTTAATACTA
* *
103405952 TATTATATATATATTCTTT--TAATA
1 TATTATGTATATATT-TTTAATACTA
* * * *
103405976 TATTA-G-GTATATTCTAAATTCTA
1 TATTATGTATATATTTTTAATACTA
* *
103405999 TATTACGTATATATATATT-ATACTA
1 TATTATGTATATAT-TTTTAATACTA
* *
103406024 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATTTTTAATACTA
* * **
103406049 TATTATTTATATTTTTTTTTCTACATGTTA
1 TATTATGTATA---TATTTT-TA-ATACTA
*
103406079 TCTTATGTATATA-TTTTAAT--TA
1 TATTATGTATATATTTTTAATACTA
* * *
103406101 TATTATGTATGTATTTTTTACACTA
1 TATTATGTATATATTTTTAATACTA
*
103406126 TATTATGTACATATTTTTAATA
1 TATTATGTATATATTTTTAATA
103406148 TTATCACGTA
Statistics
Matches: 147, Mismatches: 32, Indels: 32
0.70 0.15 0.15
Matches are distributed among these distances:
21 1 0.01
22 19 0.13
23 19 0.13
24 19 0.13
25 61 0.41
26 8 0.05
27 1 0.01
28 4 0.03
29 2 0.01
30 13 0.09
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (25 bp):
TATTATGTATATATTTTTAATACTA
Found at i:103406320 original size:16 final size:15
Alignment explanation
Indices: 103406296--103406343 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
103406286 TAATTATTAT
*
103406296 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
103406312 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
103406327 TATTTTATATACTTTA
1 TATTTTA-ATATTTTA
103406343 T
1 T
103406344 TATTCACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:103406331 original size:7 final size:8
Alignment explanation
Indices: 103406296--103406347 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
103406286 TAATTATTAT
*
103406296 TATTCTAA
1 TATTTTAA
*
103406304 TATTTTGA
1 TATTTTAA
103406312 TATTTTAA
1 TATTTTAA
103406320 TATTTT-A
1 TATTTTAA
103406327 TATTTTATA
1 TATTTTA-A
* *
103406336 TACTTTAT
1 TATTTTAA
103406344 TATT
1 TATT
103406348 CACATCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 22 0.61
9 7 0.19
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:103407880 original size:35 final size:33
Alignment explanation
Indices: 103407808--103407881 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 33
103407798 TTAGATAATG
103407808 ATAAAATCTCACTACTATCAAAATCTTAAAAAT
1 ATAAAATCTCACTACTATCAAAATCTTAAAAAT
* *
103407841 -TAAAATCTCACCT-CTATCATCAAATTTTAAAGAT
1 ATAAAATCTCA-CTACTATCA--AAATCTTAAAAAT
103407875 ATAAAAT
1 ATAAAAT
103407882 TATTATCATG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
32 16 0.46
33 2 0.06
34 11 0.31
35 6 0.17
ACGTcount: A:0.49, C:0.18, G:0.01, T:0.32
Consensus pattern (33 bp):
ATAAAATCTCACTACTATCAAAATCTTAAAAAT
Found at i:103408962 original size:16 final size:18
Alignment explanation
Indices: 103408931--103408964 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
103408921 TGTTTTTAAG
103408931 TATTTATATATAAAATTT
1 TATTTATATATAAAATTT
103408949 TATTTA-AT-TAAAATTT
1 TATTTATATATAAAATTT
103408965 AATACATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 2 0.12
18 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTTATATATAAAATTT
Found at i:103409803 original size:24 final size:24
Alignment explanation
Indices: 103409758--103409804 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
103409748 GGAAAGATAA
* *
103409758 TTTAAATATTACTTATAAAAAAAG
1 TTTAAATATCAATTATAAAAAAAG
103409782 TTTAAATATCAATT-TAAGAAAAA
1 TTTAAATATCAATTATAA-AAAAA
103409805 AATTATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (24 bp):
TTTAAATATCAATTATAAAAAAAG
Found at i:103419494 original size:3 final size:3
Alignment explanation
Indices: 103419486--103419510 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
103419476 ATTTAACTGA
103419486 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
103419511 AAAACTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:103420102 original size:21 final size:23
Alignment explanation
Indices: 103420067--103420116 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
103420057 AACCAAACTG
* *
103420067 CAATTTTCGATTTCAGA-TACTT
1 CAATTTTCGATTTCAAATTAATT
*
103420089 CAATTTT-TATTTCAAATTAATT
1 CAATTTTCGATTTCAAATTAATT
103420111 CAATTT
1 CAATTT
103420117 CAGTTTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.32, C:0.14, G:0.04, T:0.50
Consensus pattern (23 bp):
CAATTTTCGATTTCAAATTAATT
Found at i:103422467 original size:2 final size:2
Alignment explanation
Indices: 103422462--103422491 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
103422452 TATTTATATT
103422462 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
103422492 TAATACCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:103422733 original size:17 final size:18
Alignment explanation
Indices: 103422713--103422746 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
103422703 GTGAAGAAGG
*
103422713 ATTTGTAGTG-GGGTGAT
1 ATTTATAGTGTGGGTGAT
103422730 ATTTATAGTGTGGGTGA
1 ATTTATAGTGTGGGTGA
103422747 GGATTAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (18 bp):
ATTTATAGTGTGGGTGAT
Found at i:103422903 original size:2 final size:2
Alignment explanation
Indices: 103422896--103422951 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
103422886 TTAGGTGCTT
103422896 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
103422938 TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC
103422952 ACAACTCTTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:103431134 original size:7 final size:8
Alignment explanation
Indices: 103431119--103431145 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
103431109 TTGAAGAATG
103431119 AACTAAAA
1 AACTAAAA
103431127 AACTAAAA
1 AACTAAAA
103431135 AACTAAAA
1 AACTAAAA
103431143 AAC
1 AAC
103431146 CTATCAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.74, C:0.15, G:0.00, T:0.11
Consensus pattern (8 bp):
AACTAAAA
Found at i:103432320 original size:11 final size:11
Alignment explanation
Indices: 103432304--103432367 Score: 67
Period size: 12 Copynumber: 5.5 Consensus size: 11
103432294 TCAGTGGGGC
103432304 AAAAAAAAAG-
1 AAAAAAAAAGA
103432314 AAAAAAAAAGTA
1 AAAAAAAAAG-A
103432326 AAAAAAAAACGA
1 AAAAAAAAA-GA
*
103432338 GAAAATAAAAAGC
1 -AAAA-AAAAAGA
*
103432351 AAAAAAAAATA
1 AAAAAAAAAGA
103432362 AAAAAA
1 AAAAAA
103432368 CCAAATAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
10 10 0.22
11 11 0.24
12 14 0.30
13 6 0.13
14 5 0.11
ACGTcount: A:0.84, C:0.03, G:0.08, T:0.05
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:103432356 original size:14 final size:12
Alignment explanation
Indices: 103432304--103432383 Score: 56
Period size: 13 Copynumber: 6.2 Consensus size: 12
103432294 TCAGTGGGGC
103432304 AAAAAAAAAG--
1 AAAAAAAAAGAA
103432314 AAAAAAAAAGTAA
1 AAAAAAAAAG-AA
*
103432327 AAAAAAAACGAGA
1 AAAAAAAAAGA-A
*
103432340 AAATAAAAAGCAA
1 AAAAAAAAAG-AA
*
103432353 AAAAAAATAAAAA
1 AAAAAAA-AAGAA
103432366 AACCAAATAAAAGAA
1 AA--AAA-AAAAGAA
103432381 AAA
1 AAA
103432384 CCTCTACTGG
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
10 10 0.18
12 1 0.02
13 30 0.55
14 3 0.05
15 9 0.16
16 2 0.04
ACGTcount: A:0.82, C:0.05, G:0.07, T:0.05
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:103432829 original size:15 final size:13
Alignment explanation
Indices: 103432809--103432869 Score: 59
Period size: 15 Copynumber: 4.2 Consensus size: 13
103432799 TACTTCACTT
103432809 GAAAAAAAACGAAAA
1 GAAAAAAAA--AAAA
103432824 GAAAAATAAAAAAA
1 GAAAAA-AAAAAAA
103432838 TGAAAAAAGAAAAAA
1 -GAAAAAA-AAAAAA
103432853 GAAAAAGAAAAAGAA
1 GAAAAA-AAAAA-AA
103432868 GA
1 GA
103432870 GGCCAAGGTG
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
14 15 0.37
15 23 0.56
16 3 0.07
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.03
Consensus pattern (13 bp):
GAAAAAAAAAAAA
Found at i:103432864 original size:7 final size:7
Alignment explanation
Indices: 103432820--103432864 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
103432810 AAAAAAAACG
103432820 AAAAGAA
1 AAAAGAA
103432827 AAATA-AA
1 AAA-AGAA
103432834 AAAATGAA
1 AAAA-GAA
103432842 AAAAGAA
1 AAAAGAA
103432849 AAAAG-A
1 AAAAGAA
103432855 AAAAGAA
1 AAAAGAA
103432862 AAA
1 AAA
103432865 GAAGAGGCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 7 0.21
7 20 0.59
8 7 0.21
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.04
Consensus pattern (7 bp):
AAAAGAA
Found at i:103432869 original size:22 final size:22
Alignment explanation
Indices: 103432820--103432864 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
103432810 AAAAAAAACG
103432820 AAAAGAAAAATAAAAAAATGAA
1 AAAAGAAAAATAAAAAAATGAA
*
103432842 AAAAGAAAAA-AGAAAAA-GAA
1 AAAAGAAAAATAAAAAAATGAA
103432862 AAA
1 AAA
103432865 GAAGAGGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 6 0.27
22 10 0.45
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.04
Consensus pattern (22 bp):
AAAAGAAAAATAAAAAAATGAA
Found at i:103433390 original size:108 final size:108
Alignment explanation
Indices: 103433201--103433396 Score: 320
Period size: 108 Copynumber: 1.8 Consensus size: 108
103433191 TTTGTATTCT
* *
103433201 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTTAACAAATTTTCATCTT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
103433266 ATCCATTGTGATAATCTTTTTCATCTTATTCATCTCGTATCTC
66 ATCCATTGTGATAATCTTTTTCATCTTATTCATCTCGTATCTC
* ** *
103433309 AGCAAAATTTGCTATCTTGATTGATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTTCATTTT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
* *
103433374 GTCCATTTTGATAATCTTTTTCA
66 ATCCATTGTGATAATCTTTTTCA
103433397 AGCATTTTTC
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 80 1.00
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (108 bp):
AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
ATCCATTGTGATAATCTTTTTCATCTTATTCATCTCGTATCTC
Found at i:103434006 original size:132 final size:132
Alignment explanation
Indices: 103433770--103434659 Score: 1546
Period size: 132 Copynumber: 6.7 Consensus size: 132
103433760 AGGCGTAAAT
103433770 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
103433835 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
*
103433900 GT
131 GC
103433902 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
103433967 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
103434032 GC
131 GC
** *
103434034 ATATCCTATCTTCCTATATTGGTAGGAAGTGGGTCGAAGATGCAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
* *
103434099 TGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
103434164 GC
131 GC
* * **
103434166 AGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATATAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
*
103434231 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAATGTA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
103434296 GC
131 GC
* * * **
103434298 AGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATATAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
103434363 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
103434428 GC
131 GC
* *
103434430 AGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGTAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
* *
103434495 TGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
103434560 GC
131 GC
* * * *
103434562 AGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
* *
103434627 TGGTGAAGTAGATCGAAGAAAGTAGATCTTGTC
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTC
103434660 CCTGTATTTG
Statistics
Matches: 726, Mismatches: 32, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 726 1.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
GC
Found at i:103434690 original size:88 final size:88
Alignment explanation
Indices: 103433781--103434707 Score: 628
Period size: 88 Copynumber: 10.5 Consensus size: 88
103433771 GGTCCTATCT
* * *
103433781 TCCTATATT-G-GTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
1 TCCTATATTGGAGT-GGAAGTAGATCGAAGATACAGATCTTGTCTTCCCATATTGGTGGTGAAGT
103433844 AGATCGAAGAAAGCAGATCTTGTC
65 AGATCGAAGAAAGCAGATCTTGTC
* * * * * * * * * *
103433868 TTCATGTATTGGCGT-GAAGTAGATCGAAGGTAGTAGGTCCTATCTTCCTATATTGGTAG-GAAG
1 -TCCTATATTGGAGTGGAAGTAGATCGAAGATA-CAGATCTTGTCTTCCCATATTGGTGGTGAAG
* *
103433931 TGGATCGAAG-ATGCAGATCTTGTC
64 TAGATCGAAGAAAGCAGATCTTGTC
* * * *** *
103433955 TTCCCATATTGGTG-GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAA
1 -TCCTATATTGGAGTG-GAAGTAGATCGAAGATA-CAGATCTTGTCTTCCCATATTGGTGGTGAA
** * * *
103434018 GTAGATCGAAGGTAGCATATCCTATC
63 GTAGATCGAAGAAAGCAGATCTTGTC
* * * *
103434044 TTCCTATATT-G-GTAGGAAGTGGGTCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 -TCCTATATTGGAGT-GGAAGTAGATCGAAGATACAGATCTTGTCTTCCCATATTGGTGGTGAAG
*
103434107 TAGATCGCAGAAAGCAGATCTTGTC
64 TAGATCGAAGAAAGCAGATCTTGTC
* * * * * * * * *
103434132 TTCATGTATTGGCGT-GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAG
1 -TCCTATATTGGAGTGGAAGTAGATCGAAGATA-CAGATCTTGTCTTCCCATATTGGTGGTGAAG
* * * *
103434195 TGGATCCAAGATA-TAGATCTTGTC
64 TAGATCGAAGAAAGCAGATCTTGTC
* * * *** *
103434219 TTCCCATATTGGTG-GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAA
1 -TCCTATATTGGAGTG-GAAGTAGATCGAAGATA-CAGATCTTGTCTTCCCATATTGGTGGTGAA
* * *
103434282 GTAGATCGAATG-TAGCAGATCCTATC
63 GTAGATCGAA-GAAAGCAGATCTTGTC
* * * *
103434308 TTCCTATATT-GA-TAGGAAGTGGATCCAAGATATAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 -TCCTATATTGGAGT-GGAAGTAGATCGAAGATACAGATCTTGTCTTCCCATATTGGTGGTGAAG
103434371 TAGATCGAAGAAAGCAGATCTTGTC
64 TAGATCGAAGAAAGCAGATCTTGTC
* * * * * * * *
103434396 TTCATGTATTGGCGT-GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAG
1 -TCCTATATTGGAGTGGAAGTAGATCGAAGATA-CAGATCTTGTCTTCCCATATTGGTGGTGAAG
* * *
103434459 TGGATCGAAG-ATGTAGATCTTGTC
64 TAGATCGAAGAAAGCAGATCTTGTC
* * * * *** *
103434483 TTCCCATATTGGTG-GCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAA
1 -TCCTATATTGGAGTG-GAAGTAGATCGAAGATA-CAGATCTTGTCTTCCCATATTGGTGGTGAA
* * * *
103434546 GTAGATCGAAGATAGCAGGTCCTATC
63 GTAGATCGAAGAAAGCAGATCTTGTC
* * *
103434572 TTCCTATATT-GA-TAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGTGGTGAAG
1 -TCCTATATTGGAGT-GGAAGTAGATCGAAGATACAGATCTTGTCTTCCCATATTGGTGGTGAAG
*
103434635 TAGATCGAAGAAAGTAGATCTTGTC
64 TAGATCGAAGAAAGCAGATCTTGTC
* * * *
103434660 -CCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCC
1 TCCTATA-TTGG-AGTGGAAGTAGATCGAAGA-TACAGATCTTGTCTTCC
103434708 TGTATTTGGC
Statistics
Matches: 652, Mismatches: 150, Indels: 73
0.75 0.17 0.08
Matches are distributed among these distances:
86 5 0.01
87 130 0.20
88 371 0.57
89 140 0.21
90 6 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (88 bp):
TCCTATATTGGAGTGGAAGTAGATCGAAGATACAGATCTTGTCTTCCCATATTGGTGGTGAAGTA
GATCGAAGAAAGCAGATCTTGTC
Found at i:103434915 original size:130 final size:130
Alignment explanation
Indices: 103434723--103434990 Score: 378
Period size: 130 Copynumber: 2.1 Consensus size: 130
103434713 TTGGCAGCGA
*
103434723 AGCAGATCGACGATGGCGGATTTTACCTCCCCGATTACAGTGGAGTACATTAAAGCCAGTAGTTC
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCCGATTACAGTGGAGTACATTAAAGCCAGTAGTTC
* ** *
103434788 TATCCC-CTTGGGCAACAGTGGAATAGAGTGAAGATTACAGATCTTATCTCCCTAAGTAATAGTG
66 TATCCCTC-GGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAATAGTG
103434852 G
130 G
* * * ** **
103434853 AGCAGGTCGAAGATGGCGGATTTTACCTCTCTGATTATGGTGGAGTACA-TAGAAGCTGGTAGTT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCCGATTACAGTGGAGTACATTA-AAGCCAGTAGTT
* *
103434917 CTATCTCTCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAGTAGTG
65 CTATCCCTCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAATAGTG
103434982 G
130 G
103434983 AGCAGATC
1 AGCAGATC
103434991 ACATCCAGTC
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
129 2 0.02
130 118 0.98
131 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (130 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCCGATTACAGTGGAGTACATTAAAGCCAGTAGTTC
TATCCCTCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAATAGTGG
Found at i:103438366 original size:14 final size:16
Alignment explanation
Indices: 103438343--103438374 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
103438333 TTACAAATAA
103438343 TTTAATTTATTAA-AT
1 TTTAATTTATTAAGAT
103438358 TTTAA-TTATTAAGAT
1 TTTAATTTATTAAGAT
103438373 TT
1 TT
103438375 AGTGCTGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TTTAATTTATTAAGAT
Found at i:103444559 original size:9 final size:9
Alignment explanation
Indices: 103444539--103444599 Score: 88
Period size: 9 Copynumber: 6.8 Consensus size: 9
103444529 GGTATTTTTC
103444539 GGTAATT-G
1 GGTAATTCG
103444547 GGTTAATTCG
1 GG-TAATTCG
*
103444557 GTTAATTCG
1 GGTAATTCG
103444566 GGTAATTCG
1 GGTAATTCG
103444575 GGTAATTCG
1 GGTAATTCG
*
103444584 GGTAATTCA
1 GGTAATTCG
103444593 GGTAATT
1 GGTAATT
103444600 TTTAACCAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
8 2 0.04
9 44 0.92
10 2 0.04
ACGTcount: A:0.25, C:0.08, G:0.30, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:103445598 original size:14 final size:13
Alignment explanation
Indices: 103445575--103445617 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
103445565 TAGAAGAAAT
103445575 AAAA-AGAAATAA
1 AAAAGAGAAATAA
103445587 AAATAGAGAAATAA
1 AAA-AGAGAAATAA
103445601 ATAAAGAGGAAATAA
1 A-AAAGA-GAAATAA
103445616 AA
1 AA
103445618 GAAATAAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 3 0.11
13 1 0.04
14 13 0.48
15 10 0.37
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (13 bp):
AAAAGAGAAATAA
Found at i:103452844 original size:22 final size:22
Alignment explanation
Indices: 103452816--103452863 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
103452806 ATGATAGAGA
103452816 TTGAAGTGAAAAACAGACTTGC
1 TTGAAGTGAAAAACAGACTTGC
103452838 TTGAAGTGAAAAACAGACTTGC
1 TTGAAGTGAAAAACAGACTTGC
103452860 TTGA
1 TTGA
103452864 TTAAATCGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (22 bp):
TTGAAGTGAAAAACAGACTTGC
Found at i:103457006 original size:30 final size:29
Alignment explanation
Indices: 103456944--103457007 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
103456934 TGTCTCTCTC
* *
103456944 TTTTTTTTAATATTTGTGGAATTAAGCCA
1 TTTTTTTTAATATTTCTGGAATTAAGCAA
*
103456973 TTTTTTTTAATATTTCTAGG-ATTAGGCTAA
1 TTTTTTTTAATATTTCT-GGAATTAAGC-AA
103457003 TTTTT
1 TTTTT
103457008 GAAAATGCGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 22 0.73
30 8 0.27
ACGTcount: A:0.25, C:0.06, G:0.12, T:0.56
Consensus pattern (29 bp):
TTTTTTTTAATATTTCTGGAATTAAGCAA
Found at i:103457309 original size:32 final size:30
Alignment explanation
Indices: 103457273--103457335 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 30
103457263 TCCAACTCAC
* * *
103457273 TCTCAATTCTCTTTCAATTCTCTCTAAGTTTT
1 TCTCAATTCACTCTCAACTCTCTC-AA-TTTT
103457305 TCTCAATTCACTCTCAACTCTCTCAATTTT
1 TCTCAATTCACTCTCAACTCTCTCAATTTT
103457335 T
1 T
103457336 ATTAAAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 5 0.18
31 2 0.07
32 21 0.75
ACGTcount: A:0.21, C:0.29, G:0.02, T:0.49
Consensus pattern (30 bp):
TCTCAATTCACTCTCAACTCTCTCAATTTT
Found at i:103457321 original size:11 final size:11
Alignment explanation
Indices: 103457272--103457332 Score: 58
Period size: 11 Copynumber: 5.8 Consensus size: 11
103457262 TTCCAACTCA
103457272 CTCTCAATTCT
1 CTCTCAATTCT
*
103457283 CTTTCAATTCT
1 CTCTCAATTCT
103457294 CTCT-AAGTT-T
1 CTCTCAA-TTCT
* *
103457304 TTCTCAATTCA
1 CTCTCAATTCT
103457315 CTCTCAA--CT
1 CTCTCAATTCT
103457324 CTCTCAATT
1 CTCTCAATT
103457333 TTTATTAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
9 8 0.21
10 8 0.21
11 23 0.59
ACGTcount: A:0.21, C:0.31, G:0.02, T:0.46
Consensus pattern (11 bp):
CTCTCAATTCT
Found at i:103467371 original size:76 final size:76
Alignment explanation
Indices: 103467276--103467424 Score: 271
Period size: 76 Copynumber: 2.0 Consensus size: 76
103467266 TTAGATTTCG
* * *
103467276 AAATTTAGATTCAATTGTTAATGTTGTAATGAATTTAAGTTTAACAAAATAGTTTTAACACCGAT
1 AAATTTAGATTCAATTGTTAACGTTGTAATGAACTTAAGTTTAACAAAATAGCTTTAACACCGAT
103467341 AATAATTAGAT
66 AATAATTAGAT
103467352 AAATTTAGATTCAATTGTTAACGTTGTAATGAACTTAAGTTTAACAAAATAGCTTTAACACCGAT
1 AAATTTAGATTCAATTGTTAACGTTGTAATGAACTTAAGTTTAACAAAATAGCTTTAACACCGAT
103467417 AATAATTA
66 AATAATTA
103467425 AATATGAATT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (76 bp):
AAATTTAGATTCAATTGTTAACGTTGTAATGAACTTAAGTTTAACAAAATAGCTTTAACACCGAT
AATAATTAGAT
Found at i:103469099 original size:18 final size:19
Alignment explanation
Indices: 103469074--103469121 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
103469064 AAGTTTATAC
103469074 CAAAATTTCTTTAATT-TG
1 CAAAATTTCTTTAATTATG
* * *
103469092 CCAAATTTCTCTAATTATT
1 CAAAATTTCTTTAATTATG
103469111 CAAAATTTCTT
1 CAAAATTTCTT
103469122 ACACTTCTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.33, C:0.17, G:0.02, T:0.48
Consensus pattern (19 bp):
CAAAATTTCTTTAATTATG
Found at i:103475612 original size:17 final size:17
Alignment explanation
Indices: 103475570--103475613 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
103475560 AATCCAATGG
103475570 ATAGTTATAAAAATTAA
1 ATAGTTATAAAAATTAA
* *
103475587 ATA-TCTATAAATATTGA
1 ATAGT-TATAAAAATTAA
103475604 ATAGTTATAA
1 ATAGTTATAA
103475614 GAGTCTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.39
Consensus pattern (17 bp):
ATAGTTATAAAAATTAA
Found at i:103476669 original size:16 final size:16
Alignment explanation
Indices: 103476648--103476679 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
103476638 AAAAAACATA
*
103476648 TTATTACAAGTTTATT
1 TTATTACAAGTATATT
103476664 TTATTACAAGTATATT
1 TTATTACAAGTATATT
103476680 AATTTGTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.53
Consensus pattern (16 bp):
TTATTACAAGTATATT
Found at i:103478438 original size:29 final size:30
Alignment explanation
Indices: 103478362--103478438 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
103478352 TTAAATTTTG
* * * *
103478362 AAAAGTATAGGGACTAAACTTGATCAATTC
1 AAAAATATAAGGACTAAAATTGATCAAATC
* * *
103478392 AAAAATACAAGAATTAAAATTGATCAAATC
1 AAAAATATAAGGACTAAAATTGATCAAATC
103478422 -AAAATATAAGGACTAAA
1 AAAAATATAAGGACTAAA
103478439 TCTACAACTT
Statistics
Matches: 37, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
29 14 0.38
30 23 0.62
ACGTcount: A:0.55, C:0.10, G:0.12, T:0.23
Consensus pattern (30 bp):
AAAAATATAAGGACTAAAATTGATCAAATC
Found at i:103484162 original size:16 final size:16
Alignment explanation
Indices: 103484143--103484189 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
103484133 ATGCCAAGGC
103484143 ATATTTATTAAAAAAT
1 ATATTTATTAAAAAAT
* *
103484159 ATATATATATATAAAATT
1 ATATTTAT-TA-AAAAAT
103484177 ATATTTATTAAAA
1 ATATTTATTAAAA
103484190 TTTTACATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 10 0.38
17 4 0.15
18 12 0.46
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATTTATTAAAAAAT
Found at i:103486525 original size:27 final size:25
Alignment explanation
Indices: 103486482--103486533 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 25
103486472 GAACAGACCC
103486482 TTAATCTAATTACATTATATAATATTT
1 TTAATCTAATTACATTAT-T-ATATTT
*
103486509 TTAATTTAATTTA-ATTATTATATTT
1 TTAATCTAA-TTACATTATTATATTT
103486534 ATACTTCACT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 6 0.26
26 1 0.04
27 13 0.57
28 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TTAATCTAATTACATTATTATATTT
Found at i:103495323 original size:13 final size:14
Alignment explanation
Indices: 103495294--103495323 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
103495284 CATACAATCT
103495294 AATTTTAAAAATGA
1 AATTTTAAAAATGA
103495308 AATTTTAAAAAT-A
1 AATTTTAAAAATGA
103495321 AAT
1 AAT
103495324 CACTTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (14 bp):
AATTTTAAAAATGA
Found at i:103498154 original size:29 final size:29
Alignment explanation
Indices: 103498095--103498153 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
103498085 TTTGGTTTAA
* *
103498095 TGTGTAATTTTATACATACACTTTGATTT
1 TGTGTAATTTTATACATAAAATTTGATTT
103498124 TGTGTAATTTTATACATAAAAATTTGATTT
1 TGTGTAATTTTATACAT-AAAATTTGATTT
103498154 GATCGAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.32, C:0.07, G:0.10, T:0.51
Consensus pattern (29 bp):
TGTGTAATTTTATACATAAAATTTGATTT
Found at i:103499152 original size:61 final size:60
Alignment explanation
Indices: 103499065--103499236 Score: 167
Period size: 60 Copynumber: 2.9 Consensus size: 60
103499055 AACGTTTGAC
*
103499065 AAGTTTAAGTAC--CATTGGA-CAAAAAAGATTAAGTACTAAATTGAGAAAAAAAGTGTC-
1 AAGTTTAAGTACAAAATTGGACCAAAAAAGATTAAGTACTAAATT-AGAAAAAAAGTGTCT
* * * * *
103499122 AAGTTTAGGTATAAAATTGGACCCAAAAAAGATTAACT-TTCAAATTA-AGAAAAAGTGTCT
1 AAGTTTAAGTACAAAATTGGA-CCAAAAAAGATTAAGTACT-AAATTAGAAAAAAAGTGTCT
* * * *
103499182 AAGTTTAAGTACCAAATTGGACTAAAAAATATTTAAGTACCAAATTAAGAAAAAA
1 AAGTTTAAGTACAAAATTGGACCAAAAAAGA-TTAAGTACTAAATT-AGAAAAAA
103499237 TATTAAGTTT
Statistics
Matches: 90, Mismatches: 15, Indels: 15
0.75 0.12 0.12
Matches are distributed among these distances:
57 10 0.11
59 25 0.28
60 30 0.33
61 20 0.22
62 5 0.06
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (60 bp):
AAGTTTAAGTACAAAATTGGACCAAAAAAGATTAAGTACTAAATTAGAAAAAAAGTGTCT
Found at i:103499199 original size:60 final size:58
Alignment explanation
Indices: 103499065--103499257 Score: 180
Period size: 59 Copynumber: 3.3 Consensus size: 58
103499055 AACGTTTGAC
* *
103499065 AAGTTTAAGTACC--ATTGGA-CAAAAAAGATTAAGTACTAAATTGAGAAAAAAAGTGTC-
1 AAGTTTAAGTACCAAATTGGACCAAAAAAGATTAATTAC-AAATT-A-AGAAAAAGTGTCT
* ** *
103499122 AAGTTTAGGTATAAAATTGGACCCAAAAAAGATTAACTTTCAAATTAAGAAAAAGTGTCT
1 AAGTTTAAGTACCAAATTGGA-CCAAAAAAGATTAA-TTACAAATTAAGAAAAAGTGTCT
* * * * *
103499182 AAGTTTAAGTACCAAATTGGACTAAAAAATATTTAAGTACCAAATTAAGAAAAAATAT-T
1 AAGTTTAAGTACCAAATTGGACCAAAAAAGA-TTAATTA-CAAATTAAGAAAAAGTGTCT
*
103499241 AAGTTTAAATACCAAAT
1 AAGTTTAAGTACCAAAT
103499258 ATTATATTAA
Statistics
Matches: 112, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
57 10 0.09
59 43 0.38
60 39 0.35
61 18 0.16
62 2 0.02
ACGTcount: A:0.50, C:0.09, G:0.13, T:0.27
Consensus pattern (58 bp):
AAGTTTAAGTACCAAATTGGACCAAAAAAGATTAATTACAAATTAAGAAAAAGTGTCT
Found at i:103500227 original size:27 final size:29
Alignment explanation
Indices: 103500189--103500256 Score: 86
Period size: 27 Copynumber: 2.4 Consensus size: 29
103500179 AAATCTTTAT
* *
103500189 ATTTTATTTTTGT-AATATTATACATAA-
1 ATTTTAATTTTGTAAATATTATAAATAAC
*
103500216 ATTTTAATTTTGTACAATTTTATAAATAAC
1 ATTTTAATTTTGTA-AATATTATAAATAAC
103500246 ATTTTAATTTT
1 ATTTTAATTTT
103500257 ATTTGATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
27 12 0.34
29 12 0.34
30 11 0.31
ACGTcount: A:0.37, C:0.04, G:0.03, T:0.56
Consensus pattern (29 bp):
ATTTTAATTTTGTAAATATTATAAATAAC
Found at i:103500266 original size:30 final size:30
Alignment explanation
Indices: 103500206--103500273 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
103500196 TTTTGTAATA
* *
103500206 TTATACATAAATTTTAATTTTGTACAA-TT
1 TTATAAATAAATTTTAATTTTATACAATTT
***
103500235 TTATAAATAACATTTTAATTTTATTTGATTT
1 TTATAAATAA-ATTTTAATTTTATACAATTT
103500266 TTATAAAT
1 TTATAAAT
103500274 TGTCAATACC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 9 0.28
30 13 0.41
31 10 0.31
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.54
Consensus pattern (30 bp):
TTATAAATAAATTTTAATTTTATACAATTT
Found at i:103505629 original size:28 final size:31
Alignment explanation
Indices: 103505573--103505631 Score: 88
Period size: 28 Copynumber: 2.0 Consensus size: 31
103505563 AAAATATGTT
*
103505573 ATAAAAAGAAAAGAGAAAACCTAATCTAAAA
1 ATAAAAAGAAAAGAGAAAACCTAACCTAAAA
103505604 ATAAAAAG-AAA-AG-AAACCTAACCTAAAA
1 ATAAAAAGAAAAGAGAAAACCTAACCTAAAA
103505632 CTATGAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.52
29 2 0.07
30 3 0.11
31 8 0.30
ACGTcount: A:0.68, C:0.12, G:0.08, T:0.12
Consensus pattern (31 bp):
ATAAAAAGAAAAGAGAAAACCTAACCTAAAA
Found at i:103507609 original size:15 final size:15
Alignment explanation
Indices: 103507585--103507618 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
103507575 AACAATTACG
* *
103507585 ATAATGCGAGTAAAA
1 ATAATACGAGCAAAA
103507600 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
103507615 ATAA
1 ATAA
103507619 CAAAAGTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:103508313 original size:14 final size:14
Alignment explanation
Indices: 103508294--103508320 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
103508284 AAATAAAATA
103508294 TACATATATATATG
1 TACATATATATATG
103508308 TACATATATATAT
1 TACATATATATAT
103508321 AACTTAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (14 bp):
TACATATATATATG
Found at i:103510321 original size:132 final size:132
Alignment explanation
Indices: 103510128--103510900 Score: 1339
Period size: 132 Copynumber: 5.9 Consensus size: 132
103510118 CAAATACAGG
* * * * * *
103510128 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAGGATCTGTATCTTGGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
* * *
103510193 TCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
103510258 AA
131 AA
* *
103510260 TACAAGATCTGCTTTCTGCGATCTACTTTGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
*
103510325 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATA
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
103510390 AA
131 AA
*
103510392 GACAAGATCTTCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
*
103510457 TCCGCTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
103510522 AA
131 AA
*
103510524 GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
103510589 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
103510654 AA
131 AA
** *
103510656 GACAAGATCTGCTTTCTTTGATCTACTTTGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
*
103510721 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATA
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
103510786 AA
131 AA
*
103510788 GACAAGATCTTCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
* * *
103510853 TCCATTTCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTA
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTA
103510901 TTTCTTGCCC
Statistics
Matches: 611, Mismatches: 30, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 611 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (132 bp):
GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
AA
Found at i:103511050 original size:95 final size:95
Alignment explanation
Indices: 103510912--103511171 Score: 430
Period size: 95 Copynumber: 2.7 Consensus size: 95
103510902 TTCTTGCCCC
** * * * *
103510912 GGGAGATAGAACTATCAGCTCCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTT
103510977 GATCTTCAATCTATTCCACTGCCAAATACA
66 GATCTTCAATCTATTCCACTGCCAAATACA
*
103511007 GGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTT
* *
103511072 GATCTTCAATCTATTCCATTGCCAAATGCA
66 GATCTTCAATCTATTCCACTGCCAAATACA
*
103511102 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTT
103511167 GATCT
66 GATCT
103511172 GCTTCGCTGC
Statistics
Matches: 154, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 154 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (95 bp):
GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTT
GATCTTCAATCTATTCCACTGCCAAATACA
Found at i:103511231 original size:134 final size:134
Alignment explanation
Indices: 103511073--103512021 Score: 1650
Period size: 134 Copynumber: 7.1 Consensus size: 134
103511063 GCCATCTTTG
* *
103511073 ATCTTCAATCTATTCCATTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
103511138 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
103511203 TGCA
131 TGCA
* *
103511207 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCTGCTTCAATGTACTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
103511272 TAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTTCCAAATACAGGAAGGCAAGA
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGA
103511337 TCTGCA
129 TCTGCA
* * *
103511343 ATCTTCAATCTATTCTACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCCTCTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
103511408 TAGTCAGGGAGGTAAAATCTACCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
103511473 TGCA
131 TGCA
* *
103511477 ATCTTCAATCTATTCCACTGCCAAATATAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
103511542 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
103511607 TGCA
131 TGCA
*
103511611 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
103511676 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTTGCTGCCAAATACAGGAAAGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
103511741 TGCA
131 TGCA
* *
103511745 ATCTTCAATCTATTCCACTGCCAAATACAAGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
103511810 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
103511875 TGCA
131 TGCA
* * * *
103511879 ATCTTCAATCTATTCCACTGCC-AA-CCAGGGAGATAGAGTTATTGGCTTCAATGTACTCCTCTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
103511942 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
103512007 TGCA
131 TGCA
103512011 ATCTTCAATCT
1 ATCTTCAATCT
103512022 GCTCTGCTAC
Statistics
Matches: 772, Mismatches: 41, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
132 112 0.15
133 2 0.00
134 531 0.69
136 127 0.16
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCA
Found at i:103514245 original size:18 final size:17
Alignment explanation
Indices: 103514222--103514260 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
103514212 TCTGTACAGT
*
103514222 ATGATTAGGAATGAATGA
1 ATGATTAGGAA-GAAAGA
*
103514240 ATGATTTGGAAGAAAGA
1 ATGATTAGGAAGAAAGA
103514257 ATGA
1 ATGA
103514261 AAGATTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.46, C:0.00, G:0.28, T:0.26
Consensus pattern (17 bp):
ATGATTAGGAAGAAAGA
Found at i:103516222 original size:19 final size:20
Alignment explanation
Indices: 103516198--103516241 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
103516188 CGTGAAAGTC
* *
103516198 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
103516217 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
103516237 -AATGC
1 TAATGC
103516242 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:103518157 original size:15 final size:15
Alignment explanation
Indices: 103518133--103518166 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
103518123 AACAATTACG
* *
103518133 ATAATGCGAGTAAAA
1 ATAATACGAGCAAAA
103518148 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
103518163 ATAA
1 ATAA
103518167 CAAAAGTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:103518871 original size:16 final size:16
Alignment explanation
Indices: 103518852--103518882 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
103518842 AAATAAAATA
103518852 TACATATATATATATG
1 TACATATATATATATG
103518868 TACATATATATATAT
1 TACATATATATATAT
103518883 ATAACTTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (16 bp):
TACATATATATATATG
Found at i:103522955 original size:16 final size:16
Alignment explanation
Indices: 103522913--103522955 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
103522903 TTGTAATTGA
103522913 AGAGCTGTAATGGAAT
1 AGAGCTGTAATGGAAT
* *
103522929 AGCGCTATAATGGAAT
1 AGAGCTGTAATGGAAT
103522945 AGAGCTGTAAT
1 AGAGCTGTAAT
103522956 CAGTAATTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.37, C:0.09, G:0.28, T:0.26
Consensus pattern (16 bp):
AGAGCTGTAATGGAAT
Found at i:103548028 original size:34 final size:35
Alignment explanation
Indices: 103547962--103548029 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
103547952 TGTCTCATGA
103547962 AAATGTATCCATTGAATAATAATTTATCACTTTCG
1 AAATGTATCCATTGAATAATAATTTATCACTTTCG
** *
103547997 AAATGTATTTATTGAATGATAA-TTATCACTTTC
1 AAATGTATCCATTGAATAATAATTTATCACTTTC
103548030 TAAAATTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 11 0.37
35 19 0.63
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.43
Consensus pattern (35 bp):
AAATGTATCCATTGAATAATAATTTATCACTTTCG
Found at i:103548317 original size:31 final size:32
Alignment explanation
Indices: 103548264--103548328 Score: 82
Period size: 30 Copynumber: 2.1 Consensus size: 32
103548254 TAATAAAAAT
103548264 AAAATTATACTTTATCTCTTTTAAAAATGATAA
1 AAAATTATACTTTATCTCTTTT-AAAATGATAA
*
103548297 AAAATTA-A-TTTAATCT-TTTTAAAATTATAA
1 AAAATTATACTTT-ATCTCTTTTAAAATGATAA
103548327 AA
1 AA
103548329 GTATAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 11 0.37
31 7 0.23
32 5 0.17
33 7 0.23
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (32 bp):
AAAATTATACTTTATCTCTTTTAAAATGATAA
Found at i:103548533 original size:11 final size:11
Alignment explanation
Indices: 103548517--103548541 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
103548507 GTTTGATAAT
103548517 AAAAAAAAAAG
1 AAAAAAAAAAG
103548528 AAAAAAAAAAG
1 AAAAAAAAAAG
103548539 AAA
1 AAA
103548542 GAAATTGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:103551743 original size:15 final size:15
Alignment explanation
Indices: 103551725--103551770 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
103551715 TAATTGTTGG
103551725 AAATATATAGATATT
1 AAATATATAGATATT
*
103551740 AAATATATATGATA-C
1 AAATATATA-GATATT
103551755 AAATA-ATTAGATATT
1 AAATATA-TAGATATT
103551770 A
1 A
103551771 TTTGTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 5 0.19
15 17 0.65
16 4 0.15
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (15 bp):
AAATATATAGATATT
Found at i:103559975 original size:43 final size:45
Alignment explanation
Indices: 103559885--103560005 Score: 124
Period size: 43 Copynumber: 2.8 Consensus size: 45
103559875 ACCCATATCG
* * * * *
103559885 ATGCCACTATCCCAGACAGGGTCTTACACG-AA-CTCGATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCGAATAACA
*
103559928 ATGCCAATGTCCCAGACATGTTCTTACACGTAATCTC-AAT-ACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCGAATAACA
*** *
103559971 ATGCCAATGTTTTAGACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC
103560006 GCATCTCGAT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 58 0.89
44 4 0.06
45 3 0.05
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (45 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCGAATAACA
Found at i:103572695 original size:9 final size:9
Alignment explanation
Indices: 103572679--103572730 Score: 86
Period size: 9 Copynumber: 5.8 Consensus size: 9
103572669 GGTATTTTTC
103572679 GGTAATTCG
1 GGTAATTCG
*
103572688 GTTAATTCG
1 GGTAATTCG
*
103572697 GTTAATTCG
1 GGTAATTCG
103572706 GGTAATTCG
1 GGTAATTCG
103572715 GGTAATTCG
1 GGTAATTCG
103572724 GGTAATT
1 GGTAATT
103572731 TTTAACCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:103572907 original size:12 final size:12
Alignment explanation
Indices: 103572890--103572914 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103572880 AGTAATTTCG
103572890 GGTCGGTTAACC
1 GGTCGGTTAACC
103572902 GGTCGGTTAACC
1 GGTCGGTTAACC
103572914 G
1 G
103572915 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:103573023 original size:17 final size:16
Alignment explanation
Indices: 103572979--103573033 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
103572969 TTTGGTTCGC
103572979 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
103572995 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
103573011 TGTGTTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
103573028 TGTATT
1 TGTATT
103573034 ATTAAATCGA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
16 21 0.58
17 15 0.42
ACGTcount: A:0.22, C:0.00, G:0.38, T:0.40
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:103579298 original size:26 final size:26
Alignment explanation
Indices: 103579262--103579316 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
103579252 AGACTTTCAC
103579262 GACAATTTTGTAAATAACATTACAAA
1 GACAATTTTGTAAATAACATTACAAA
*
103579288 GACAATTTTGTAAATAACATTATAAA
1 GACAATTTTGTAAATAACATTACAAA
103579314 GAC
1 GAC
103579317 TTATGGGCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (26 bp):
GACAATTTTGTAAATAACATTACAAA
Found at i:103584358 original size:13 final size:13
Alignment explanation
Indices: 103584340--103584372 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
103584330 AAACATTTAA
103584340 ATTTTCACACGAG
1 ATTTTCACACGAG
103584353 ATTTTCACACGAG
1 ATTTTCACACGAG
103584366 ATTTTCA
1 ATTTTCA
103584373 AAAATGTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.36
Consensus pattern (13 bp):
ATTTTCACACGAG
Found at i:103588235 original size:18 final size:18
Alignment explanation
Indices: 103588214--103588300 Score: 138
Period size: 18 Copynumber: 4.8 Consensus size: 18
103588204 CGTTTACGAT
103588214 ACTATTCACGTATACGGC
1 ACTATTCACGTATACGGC
* * *
103588232 ACTATTTACGTATACAGT
1 ACTATTCACGTATACGGC
103588250 ACTATTCACGTATACGGC
1 ACTATTCACGTATACGGC
*
103588268 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
103588286 ACTATTCACGTATAC
1 ACTATTCACGTATAC
103588301 AGTAGTTGGG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (18 bp):
ACTATTCACGTATACGGC
Found at i:103588260 original size:36 final size:36
Alignment explanation
Indices: 103588213--103588300 Score: 158
Period size: 36 Copynumber: 2.4 Consensus size: 36
103588203 CCGTTTACGA
*
103588213 TACTATTCACGTATACGGCACTATTTACGTATACAG
1 TACTATTCACGTATACGGCACTATTCACGTATACAG
*
103588249 TACTATTCACGTATACGGCACTATTCACGTATACGG
1 TACTATTCACGTATACGGCACTATTCACGTATACAG
103588285 TACTATTCACGTATAC
1 TACTATTCACGTATAC
103588301 AGTAGTTGGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.33
Consensus pattern (36 bp):
TACTATTCACGTATACGGCACTATTCACGTATACAG
Found at i:103593617 original size:9 final size:9
Alignment explanation
Indices: 103593580--103593628 Score: 71
Period size: 9 Copynumber: 5.4 Consensus size: 9
103593570 GGTATTTTTC
103593580 GGTAATTCG
1 GGTAATTCG
*
103593589 GTTAATTCG
1 GGTAATTCG
*
103593598 GTTAATTCG
1 GGTAATTCG
103593607 GGTAATTCG
1 GGTAATTCG
*
103593616 GGGAATTCG
1 GGTAATTCG
103593625 GGTA
1 GGTA
103593629 TTTTTAACCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.22, C:0.10, G:0.33, T:0.35
Consensus pattern (9 bp):
GGTAATTCG
Found at i:103594276 original size:18 final size:16
Alignment explanation
Indices: 103594260--103594290 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
103594250 TTTTAATTAA
103594260 ATTATTTAAAATAATT
1 ATTATTTAAAATAATT
*
103594276 ATTTTTTAAAATAAT
1 ATTATTTAAAATAAT
103594291 AAACAAACCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTATTTAAAATAATT
Found at i:103597950 original size:31 final size:31
Alignment explanation
Indices: 103597915--103597974 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
103597905 AAACAAAACA
103597915 AAACTTAATGATGACTGAAAATCTAAAATCT
1 AAACTTAATGATGACTGAAAATCTAAAATCT
*
103597946 AAACTTAATGATGACTGAAATTCTAAAAT
1 AAACTTAATGATGACTGAAAATCTAAAAT
103597975 ATGAAAAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.30
Consensus pattern (31 bp):
AAACTTAATGATGACTGAAAATCTAAAATCT
Found at i:103612255 original size:30 final size:30
Alignment explanation
Indices: 103612219--103612279 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
103612209 CAGCTTTCAA
103612219 AGTGCAGGAGGCAATTACAAATATATTTTT
1 AGTGCAGGAGGCAATTACAAATATATTTTT
103612249 AGTGCAGGAGGCAATTACAAATATATTTTT
1 AGTGCAGGAGGCAATTACAAATATATTTTT
103612279 A
1 A
103612280 TCTTTTGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (30 bp):
AGTGCAGGAGGCAATTACAAATATATTTTT
Found at i:103616006 original size:216 final size:216
Alignment explanation
Indices: 103615692--103616777 Score: 1384
Period size: 216 Copynumber: 5.0 Consensus size: 216
103615682 ACTGCTAAGT
* * * * ** * * * *
103615692 CCATCTTAGATTCCATATTCAAAGTAATACTTTCAATTTTACCAATTCTCTCACCATTTTCCCCG
1 CCATCTTAGACTCCGTATTCAAAATAGTACACTCAATTTTACCAATTCCCTCACCTTTTTCCTCA
* * * * * *
103615757 GCACCACTATTTTCTTCCTCCTCCAGA-TTAACACTGTGAGAAACTTCGCTTTTGGAACT-AAGC
66 GCACCAGTATTTTCTTCCTCTTCCA-ACTTAACACTGTGGGGAACTTCACTTTTGGAACTGGA-C
* * * * * * * *
103615820 TCTAAAGAAGCTAATTCAGTTCTAGTTTCACTTCCACTAGCAGGAGCTTCCAATGGAGGAGAAGC
129 TCTGAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAGCTTCCAGTGGAGGAGAAGC
**
103615885 CTTTTCTAAATCAGGAACTAAAG
194 CTTTTCTGTATCAGGAACTAAAG
* * * * **
103615908 CCATCTTAGACTCCATATTCGAAGTAGTACACTCAAATTTACCAATTCTTTCACCTTTTTCCTCA
1 CCATCTTAGACTCCGTATTCAAAATAGTACACTCAATTTTACCAATTCCCTCACCTTTTTCCTCA
* * * * * *
103615973 GCACTAGTGTCTTCTTCCTCTTCCAACTTAACACTCTGGGGATCTTCACTTTTGGAACCGGACTC
66 GCACCAGTATTTTCTTCCTCTTCCAACTTAACACTGTGGGGAACTTCACTTTTGGAACTGGACTC
* * *
103616038 TAAAGGAGCTGATTCAGTTGTAATTTCACTTTCAATGGCAGAAGCTTCCAGTGGAGGAGAAGCCT
131 TGAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAGCTTCCAGTGGAGGAGAAGCCT
*
103616103 TTTCTGTATCAGCAACTAAAG
196 TTTCTGTATCAGGAACTAAAG
* * *
103616124 CTATCTTAGACTCCGTATTCAAAATTGTACACTCAATTTTACCAATTCCCTCACCTTCTTCCTCA
1 CCATCTTAGACTCCGTATTCAAAATAGTACACTCAATTTTACCAATTCCCTCACCTTTTTCCTCA
* * *
103616189 GCACCAGTATTTTCTTCCTTTTCCAACTTAACACTCTGGGGAACTTTACTTTTGGAACTGGACTC
66 GCACCAGTATTTTCTTCCTCTTCCAACTTAACACTGTGGGGAACTTCACTTTTGGAACTGGACTC
* * *
103616254 TGAAGGAGCTAATGCAGTTGTAGTTTCACTTTCAATAGCAAAAGCTTCCAGTGGAGGAGAAGCCT
131 TGAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAGCTTCCAGTGGAGGAGAAGCCT
103616319 TTTCTGTATCAGGAACTAAAG
196 TTTCTGTATCAGGAACTAAAG
* * *
103616340 CCATCTTAGACTCTGTATTCAAAATAGAACATTCAATTTTACCAATTCCCTCACCTTTTTCCTCA
1 CCATCTTAGACTCCGTATTCAAAATAGTACACTCAATTTTACCAATTCCCTCACCTTTTTCCTCA
* *
103616405 GCACCAGCATTTTCATCCTCTTCCAACTTAACACTGTGGGGAACTTCACTTTTGGAACTGGACTC
66 GCACCAGTATTTTCTTCCTCTTCCAACTTAACACTGTGGGGAACTTCACTTTTGGAACTGGACTC
* * * * *
103616470 TGAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAACTTCAAGTGGAAGCGCAGCCT
131 TGAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAGCTTCCAGTGGAGGAGAAGCCT
*
103616535 TTTCTGTATCAAGAACTAAAG
196 TTTCTGTATCAGGAACTAAAG
* ** *
103616556 CCATCTTAGACTCTGTATTCAAAATAGTACACTCAATTTTACCAAACCCCTCACCATTTTCCTCA
1 CCATCTTAGACTCCGTATTCAAAATAGTACACTCAATTTTACCAATTCCCTCACCTTTTTCCTCA
** * *** **
103616621 GCACCAGCGTTTTCTTCTTCTTCCAACTTAACACTGTGGGGAACTTCACTTTCCAAACCAGACTC
66 GCACCAGTATTTTCTTCCTCTTCCAACTTAACACTGTGGGGAACTTCACTTTTGGAACTGGACTC
** * * * * *
103616686 TGAAGGAGCCGATTCAGTTGTAATTTCACTTCCAATATCAGAAGCTCCCAGTGGGGGAGAAACCT
131 TGAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAGCTTCCAGTGGAGGAGAAGCCT
* * *
103616751 TTTCTATATCAGGAGCTAAAT
196 TTTCTGTATCAGGAACTAAAG
103616772 CCATCT
1 CCATCT
103616778 CTGATACCAT
Statistics
Matches: 762, Mismatches: 106, Indels: 4
0.87 0.12 0.00
Matches are distributed among these distances:
215 1 0.00
216 760 1.00
217 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (216 bp):
CCATCTTAGACTCCGTATTCAAAATAGTACACTCAATTTTACCAATTCCCTCACCTTTTTCCTCA
GCACCAGTATTTTCTTCCTCTTCCAACTTAACACTGTGGGGAACTTCACTTTTGGAACTGGACTC
TGAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAGCTTCCAGTGGAGGAGAAGCCT
TTTCTGTATCAGGAACTAAAG
Found at i:103616867 original size:432 final size:430
Alignment explanation
Indices: 103615836--103616884 Score: 1155
Period size: 432 Copynumber: 2.4 Consensus size: 430
103615826 GAAGCTAATT
* * * ** * * * *
103615836 CAGTTCTAGTTTCACTTCCACTAGCAGGAGCTTCCAATGGAGGAGAAGCCTTTTCTAAATCAGGA
1 CAGTTGTAATTTCACTTCCAATAGCAAAAGCTCCCAGTGGAGGAGAAACCTTTTCTATATCAGGA
* ** * * * **
103615901 ACTAAAGCCATCTTAGACTCCATATTCGAAGTAGTACACTCAAATTTACCAATTCTTTCACCTTT
66 ACTAAAGCCATCTTAGACTCCATATTCAAAACAGAACACTCAATTTTACCAATTC-CTCACCTAC
* * *** * * * * *
103615966 TTCCTCAGCACTAGTGTCTTCTTCCTCTTCCAACTTAACACTCTGGGGATCTTCACTTTTGGAAC
130 TTCCTCAGAACCACCATTTTCATCCTCGT-CAACTTAACACTATGGGGAACTTCACTTTTGGAAC
* * * * *
103616031 CGGACTCTAAAGGAGCTGATTCAGTTGTAATTTCACTTTCAATGGCAGAAGCTTCCAGTGGAGGA
194 CGGACTCTAAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAACTTCAAGTGGAAGA
* *
103616096 GAAGCCTTTTCTGTATCAGCAACTAAAGCTATCTTAGACTCCGTATTCAAAATTGTACACTCAAT
259 GAAGCCTTTTCTGTATCAGCAACTAAAGCCATCTTAGACTCCGTATTCAAAATAGTACACTCAAT
** *
103616161 TTTACCAATTCCCTCACCTTCTTCCTCAGCACCAGTATTTTCTTCCTTTTCCAACTTAACACTCT
324 TTTACCAAACCCCTCACCTTCTTCCTCAGCACCAGCATTTTCTTCCTTTTCCAACTTAACACTCT
* *** ** *
103616226 GGGGAACTTTACTTTTGGAACTGGACTCTGAAGGAGCTAATG
389 GGGGAACTTCACTTTCCAAACCAGACTCTGAAGGAGCCAATG
* * * * *
103616268 CAGTTGTAGTTTCACTTTCAATAGCAAAAGCTTCCAGTGGAGGAGAAGCCTTTTCTGTATCAGGA
1 CAGTTGTAATTTCACTTCCAATAGCAAAAGCTCCCAGTGGAGGAGAAACCTTTTCTATATCAGGA
** * * **
103616333 ACTAAAGCCATCTTAGACTCTGTATTCAAAATAGAACATTCAATTTTACCAATTCCCTCACCTTT
66 ACTAAAGCCATCTTAGACTCCATATTCAAAACAGAACACTCAATTTTACCAATT-CCTCACCTAC
* * * *
103616398 TTCCTCAGCACCAGCATTTTCATCCTCTTCCAACTTAACACTGTGGGGAACTTCACTTTTGGAAC
130 TTCCTCAGAACCACCATTTTCATCCTCGT-CAACTTAACACTATGGGGAACTTCACTTTTGGAAC
* * *
103616463 TGGACTCTGAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAACTTCAAGTGGAAGC
194 CGGACTCTAAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAACTTCAAGTGGAAGA
* *
103616528 GCAGCCTTTTCTGTATCAAG-AACTAAAGCCATCTTAGACTCTGTATTCAAAATAGTACACTCAA
259 GAAGCCTTTTCTGTATC-AGCAACTAAAGCCATCTTAGACTCCGTATTCAAAATAGTACACTCAA
*
103616592 TTTTACCAAACCCCTCACCATT-TTCCTCAGCACCAGCGTTTTCTT-CTTCTTCCAACTTAACAC
323 TTTTACCAAACCCCTCACC-TTCTTCCTCAGCACCAGCATTTTCTTCCTT-TTCCAACTTAACAC
* * *
103616655 TGTGGGGAACTTCACTTTCCAAACCAGACTCTGAAGGAGCCGATT
386 TCTGGGGAACTTCACTTTCCAAACCAGACTCTGAAGGAGCCAATG
* * *
103616700 CAGTTGTAATTTCACTTCCAATATCAGAAGCTCCCAGTGGGGGAGAAACCTTTTCTATATCAGGA
1 CAGTTGTAATTTCACTTCCAATAGCAAAAGCTCCCAGTGGAGGAGAAACCTTTTCTATATCAGGA
* * * * * *
103616765 GCTAAATCCATCTCT-GA-TACCATATTCAGAGCAGTATC-CTCAGTTTTACCATCATT-CTCAC
66 ACTAAAGCCATCT-TAGACT-CCATATTCAAAACAG-AACACTCAATTTTACCA--ATTCCTCAC
* * * *
103616826 C-ACTTCCTTCAGAACCACCCTTATTTGACTCCT-GT-AACTTAACACCATGGGGCACTTCA
126 CTACTTCC-TCAGAACCA-CCAT-TTTCA-TCCTCGTCAACTTAACACTATGGGGAACTTCA
103616885 ACTTCGGAAC
Statistics
Matches: 527, Mismatches: 77, Indels: 26
0.84 0.12 0.04
Matches are distributed among these distances:
431 8 0.02
432 497 0.94
433 10 0.02
434 8 0.02
435 4 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (430 bp):
CAGTTGTAATTTCACTTCCAATAGCAAAAGCTCCCAGTGGAGGAGAAACCTTTTCTATATCAGGA
ACTAAAGCCATCTTAGACTCCATATTCAAAACAGAACACTCAATTTTACCAATTCCTCACCTACT
TCCTCAGAACCACCATTTTCATCCTCGTCAACTTAACACTATGGGGAACTTCACTTTTGGAACCG
GACTCTAAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAACTTCAAGTGGAAGAGA
AGCCTTTTCTGTATCAGCAACTAAAGCCATCTTAGACTCCGTATTCAAAATAGTACACTCAATTT
TACCAAACCCCTCACCTTCTTCCTCAGCACCAGCATTTTCTTCCTTTTCCAACTTAACACTCTGG
GGAACTTCACTTTCCAAACCAGACTCTGAAGGAGCCAATG
Found at i:103616927 original size:648 final size:646
Alignment explanation
Indices: 103615692--103616936 Score: 1442
Period size: 648 Copynumber: 1.9 Consensus size: 646
103615682 ACTGCTAAGT
* * * * *
103615692 CCATCTTAGATTCCATATTCAAAGTAATACTTTCAATTTTACCAATTCTCTCACCATTTTCCCCG
1 CCATCTTAGACTCCATATTCAAAATAATACATTCAATTTTACCAATTCCCTCACCATTTTCCCCA
* *
103615757 GCACCACTATTTTCTTCCTCCTCCAGATTAACACTGTGAGAAACTTCGCTTTTGGAACTAAGCTC
66 GCACCACTATTTTCATCCTCCTCCAGATTAACACTGTGAGAAACTTCACTTTTGGAACTAAGCTC
* * * * *
103615822 TAAAGAAGCTAATTCAGTTCTAGTTTCACTTCCACTAGCAGGAGCTTCCAATGGAGGAGAAGCCT
131 TAAAGAAGCTAATTCAGTTCTAATTTCACTTCCAATAGCAGAAACTTCCAATGGAAGAGAAGCCT
* * *
103615887 TTTCTAAATCAGGAACTAAAGCCATCTTAGACTCCATATTCGAAGTAGTACACTCAAATTTACCA
196 TTTCTAAATCAAGAACTAAAGCCATCTTAGACTCCATATTCAAAATAGTACACTCAAATTTACCA
** ** * * * *
103615952 ATTCTTTCACCTTTTTCCTCAGCACTAGTGTCTTCTTCCTCTTCCAACTTAACACTCTGGGGATC
261 AACCCCTCACCATTTTCCTCAGCACCAGCGTCTTCTTCCTCTTCCAACTTAACACTCTGGGGAAC
*** * * * *
103616017 TTCACTTTTGGAACCGGACTCTAAAGGAGCTGATTCAGTTGTAATTTCACTTTCAATGGCAGAAG
326 TTCACTTTCCAAACCAGACTCTAAAGGAGCCGATTCAGTTGTAATTTCACTTCCAATAGCAGAAG
* * * * *
103616082 CTTCCAGTGGAGGAGAAGCCTTTTCTGTATCAGCAACTAAAGCTATCTTAGACTCCGTATTCAAA
391 CTCCCAGTGGAGGAGAAACCTTTTCTATATCAGCAACTAAAGCCATCTTAGACTCCATATTCAAA
** * * *
103616147 ATTGTACACTCAATTTTACCAATTCCCTCACCTTCTTCCTCAGCACCAGTATTTTCTTCCTTTTC
456 ACAGTACACTCAATTTTACCAATT-CCTCACCTACTTCCTCAGCACCAGTATTTACTTCCTTGT-
* * *** * * *
103616212 CAACTTAACACTCTGGGGAACTTTACTTTTGGAACTGGACTCTGAAGGAGCTAATGCAGTTGTAG
519 CAACTTAACACTCTGGGGAACTTAACTTTCGGAACCCAACTCTGAAGAACCTAATGCAGTAGTAG
103616277 TTTCACTTTCAATAGCAAAAGCTTCCAGTGGAGGAGAAGCCTTTTCTGTATCAGGAACTAAAG
584 TTTCACTTTCAATAGCAAAAGCTTCCAGTGGAGGAGAAGCCTTTTCTGTATCAGGAACTAAAG
** * *
103616340 CCATCTTAGACTCTGTATTCAAAATAGA-ACATTCAATTTTACCAATTCCCTCACCTTTTTCCTC
1 CCATCTTAGACTCCATATTCAAAATA-ATACATTCAATTTTACCAATTCCCTCACCATTTTCCCC
* * * *
103616404 AGCACCAGC-ATTTTCATCCTCTTCCA-ACTTAACACTGTGGGGAACTTCACTTTTGGAACT-GG
65 AGCACCA-CTATTTTCATCCTCCTCCAGA-TTAACACTGTGAGAAACTTCACTTTTGGAACTAAG
* * * * * *
103616466 ACTCTGAAGGAGCTAATTCAGTTGTAATTTCACTTTCAATAGCAGAAACTT-CAAGTGGAAGCGC
128 -CTCTAAAGAAGCTAATTCAGTTCTAATTTCACTTCCAATAGCAGAAACTTCCAA-TGGAAGAGA
** ** *
103616530 AGCCTTTTCTGTATCAAGAACTAAAGCCATCTTAGACTCTGTATTCAAAATAGTACACTCAATTT
191 AGCCTTTTCTAAATCAAGAACTAAAGCCATCTTAGACTCCATATTCAAAATAGTACACTCAAATT
* * *
103616595 TACCAAACCCCTCACCATTTTCCTCAGCACCAGCGTTTTCTTCTTCTTCCAACTTAACACTGTGG
256 TACCAAACCCCTCACCATTTTCCTCAGCACCAGCGTCTTCTTCCTCTTCCAACTTAACACTCTGG
* *
103616660 GGAACTTCACTTTCCAAACCAGACTCTGAAGGAGCCGATTCAGTTGTAATTTCACTTCCAATATC
321 GGAACTTCACTTTCCAAACCAGACTCTAAAGGAGCCGATTCAGTTGTAATTTCACTTCCAATAGC
* * * *
103616725 AGAAGCTCCCAGTGGGGGAGAAACCTTTTCTATATCAGGAGCTAAATCCATCTCT-GA-TACCAT
386 AGAAGCTCCCAGTGGAGGAGAAACCTTTTCTATATCAGCAACTAAAGCCATCT-TAGACT-CCAT
* * * **
103616788 ATTCAGAGCAGTATC-CTCAGTTTTACCATCATT-CTCACC-ACTTCCTTCAGAACCACCCTTAT
449 ATTCAAAACAGTA-CACTCAATTTTACCA--ATTCCTCACCTACTTCC-TCAG---CACCAGTAT
* **
103616850 TTGAC-TCC-TGT-AACTTAACAC-CATGGGGCACTTCAAC-TTCGGAACCCAACTCTGGTGAAC
507 TT-ACTTCCTTGTCAACTTAACACTC-TGGGGAACTT-AACTTTCGGAACCCAACTCTGAAGAAC
103616910 CTAATAG-AGTAGTAGTTTCACTTTCAA
569 CTAAT-GCAGTAGTAGTTTCACTTTCAA
103616937 CAACAGAAGC
Statistics
Matches: 495, Mismatches: 84, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
647 12 0.02
648 458 0.93
649 7 0.01
650 5 0.01
651 12 0.02
652 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (646 bp):
CCATCTTAGACTCCATATTCAAAATAATACATTCAATTTTACCAATTCCCTCACCATTTTCCCCA
GCACCACTATTTTCATCCTCCTCCAGATTAACACTGTGAGAAACTTCACTTTTGGAACTAAGCTC
TAAAGAAGCTAATTCAGTTCTAATTTCACTTCCAATAGCAGAAACTTCCAATGGAAGAGAAGCCT
TTTCTAAATCAAGAACTAAAGCCATCTTAGACTCCATATTCAAAATAGTACACTCAAATTTACCA
AACCCCTCACCATTTTCCTCAGCACCAGCGTCTTCTTCCTCTTCCAACTTAACACTCTGGGGAAC
TTCACTTTCCAAACCAGACTCTAAAGGAGCCGATTCAGTTGTAATTTCACTTCCAATAGCAGAAG
CTCCCAGTGGAGGAGAAACCTTTTCTATATCAGCAACTAAAGCCATCTTAGACTCCATATTCAAA
ACAGTACACTCAATTTTACCAATTCCTCACCTACTTCCTCAGCACCAGTATTTACTTCCTTGTCA
ACTTAACACTCTGGGGAACTTAACTTTCGGAACCCAACTCTGAAGAACCTAATGCAGTAGTAGTT
TCACTTTCAATAGCAAAAGCTTCCAGTGGAGGAGAAGCCTTTTCTGTATCAGGAACTAAAG
Found at i:103622611 original size:19 final size:19
Alignment explanation
Indices: 103622584--103622620 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
103622574 GAAATTTCAA
103622584 TTATGTACTAAGCATAAAT
1 TTATGTACTAAGCATAAAT
*
103622603 TTATTTACTAAGCATAAA
1 TTATGTACTAAGCATAAA
103622621 GTTGTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (19 bp):
TTATGTACTAAGCATAAAT
Found at i:103624688 original size:21 final size:22
Alignment explanation
Indices: 103624654--103624694 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
103624644 TTTTTGAATT
103624654 ATTATTATAATTATAATTAATG
1 ATTATTATAATTATAATTAATG
*
103624676 ATTATTA-AATTATATTTAA
1 ATTATTATAATTATAATTAA
103624695 ATAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
ATTATTATAATTATAATTAATG
Found at i:103624930 original size:14 final size:14
Alignment explanation
Indices: 103624911--103624967 Score: 64
Period size: 14 Copynumber: 4.1 Consensus size: 14
103624901 TTCACTCAAT
103624911 AATATATAAATTAC
1 AATATATAAATTAC
** *
103624925 AATATATTCATTAT
1 AATATATAAATTAC
103624939 AAT-TATAAATTAC
1 AATATATAAATTAC
103624952 AATATATTAAA-TAC
1 AATATA-TAAATTAC
103624966 AA
1 AA
103624968 ACATATATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
13 10 0.29
14 21 0.60
15 4 0.11
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (14 bp):
AATATATAAATTAC
Found at i:103627716 original size:18 final size:18
Alignment explanation
Indices: 103627693--103627779 Score: 129
Period size: 18 Copynumber: 4.8 Consensus size: 18
103627683 CGTTTATGGT
103627693 ACTATTCACGTATACGGC
1 ACTATTCACGTATACGGC
*
103627711 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
* *
103627729 ACTATTTAAGTATACGGC
1 ACTATTCACGTATACGGC
*
103627747 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
*
103627765 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
103627780 AGTAGTTGGG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 61 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (18 bp):
ACTATTCACGTATACGGC
Done.