Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 323 of 333
Found at i:104890086 original size:40 final size:37
Alignment explanation
Indices: 104889985--104890118 Score: 159
Period size: 35 Copynumber: 3.6 Consensus size: 37
104889975 TTTCTAATTA
* * *
104889985 AAATACTATACCTACATTTTACAACTCGGTATGG--G
1 AAATACCATACCTACATTTCACAACTCAGTATGGATG
* **
104890020 AAATGCCATACCTACATTTCTTAACTCAGTATGGATTTG
1 AAATACCATACCTACATTTCACAACTCAGTATGGA--TG
104890059 ATAATACCATACCTACATTTCACAACTCAGTATGGATG
1 A-AATACCATACCTACATTTCACAACTCAGTATGGATG
104890097 --ATACCATACCTACATTTCACAA
1 AAATACCATACCTACATTTCACAA
104890119 TTTACCATGG
Statistics
Matches: 85, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
35 50 0.59
38 2 0.02
39 2 0.02
40 31 0.36
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.31
Consensus pattern (37 bp):
AAATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:104890129 original size:35 final size:35
Alignment explanation
Indices: 104890062--104890129 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
104890052 GGATTTGATA
**
104890062 ATACCATACCTACATTTCACAACTCAGTATGGATG
1 ATACCATACCTACATTTCACAACTCACCATGGATG
* *
104890097 ATACCATACCTACATTTCACAATTTACCATGGA
1 ATACCATACCTACATTTCACAACTCACCATGGA
104890130 ACAACCATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.29
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCACCATGGATG
Found at i:104890129 original size:75 final size:75
Alignment explanation
Indices: 104889986--104890129 Score: 173
Period size: 75 Copynumber: 1.9 Consensus size: 75
104889976 TTCTAATTAA
* * * * ** **
104889986 AATACTATACCTACATTTTACAACTCGGTATGGGAAATGCCATACCTACATTTCTTAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACTCACCA
104890051 TGGATTTGAT
66 TGGATTTGAT
* * *
104890061 AATACCATACCTACATTTCACAACTCAGTAT-GGATGATACCATACCTACATTTCACAATTTACC
1 AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACAACTCACC
104890125 ATGGA
65 ATGGA
104890130 ACAACCATGG
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
74 3 0.05
75 54 0.95
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (75 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACTCACCA
TGGATTTGAT
Found at i:104891982 original size:13 final size:13
Alignment explanation
Indices: 104891964--104892002 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
104891954 GCCACTTGGC
104891964 TGTGTGAGCCACA
1 TGTGTGAGCCACA
104891977 TGTGTGAGCCACA
1 TGTGTGAGCCACA
104891990 TG-GTCGAGCCACA
1 TGTGT-GAGCCACA
104892003 CGGGAATGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 2 0.08
13 23 0.92
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.21
Consensus pattern (13 bp):
TGTGTGAGCCACA
Found at i:104896598 original size:28 final size:28
Alignment explanation
Indices: 104896565--104896637 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
104896555 AGCCTATTTT
**
104896565 TTTATAATTTTTAAATGATTAAATTGAA
1 TTTATAATTTTTAAATGATTAAATCAAA
*
104896593 TTTAT-ATAATTTAAATGATTAAATCAAA
1 TTTATAAT-TTTTAAATGATTAAATCAAA
*
104896621 TTTAAAATTTTATAAAT
1 TTTATAATTTT-TAAAT
104896638 TACAAAGAGC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
27 2 0.05
28 28 0.76
29 7 0.19
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (28 bp):
TTTATAATTTTTAAATGATTAAATCAAA
Found at i:104897736 original size:54 final size:54
Alignment explanation
Indices: 104897672--104897782 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
104897662 TTAGTTATGT
104897672 ATTGGGTAAACTGACAGTGACTTTTATCTACCCTAAAAATTAAAAAGAAAATTA
1 ATTGGGTAAACTGACAGTGACTTTTATCTACCCTAAAAATTAAAAAGAAAATTA
*
104897726 ATTGGGTAAACTGACAGTGACTTTTATCTACCCTAAAAATTCAAAAGAAAATTA
1 ATTGGGTAAACTGACAGTGACTTTTATCTACCCTAAAAATTAAAAAGAAAATTA
104897780 ATT
1 ATT
104897783 TAGTCTATTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.31
Consensus pattern (54 bp):
ATTGGGTAAACTGACAGTGACTTTTATCTACCCTAAAAATTAAAAAGAAAATTA
Found at i:104899728 original size:56 final size:56
Alignment explanation
Indices: 104899628--104899737 Score: 145
Period size: 56 Copynumber: 2.0 Consensus size: 56
104899618 GACCATGGCA
* *
104899628 TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCGATATGTGACT
1 TCGATATATGTGTGCGAGTAAGACCACATTTTAGACGTTAGCATCGATATGTGACT
*
104899684 TCGATATATGTGTGCGAGTAAGACC-C-TGTTTGGGACAG-TAGCATCGATATGTGA
1 TCGATATATGTGTGCGAGTAAGACCACAT-TTT-AGAC-GTTAGCATCGATATGTGA
104899738 TCACATGTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
54 1 0.02
55 4 0.08
56 42 0.88
57 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACATTTTAGACGTTAGCATCGATATGTGACT
Found at i:104902518 original size:28 final size:28
Alignment explanation
Indices: 104902481--104902587 Score: 169
Period size: 28 Copynumber: 3.8 Consensus size: 28
104902471 GCAATCAAAT
*
104902481 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
104902509 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
104902537 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
104902565 ATGGCACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
104902588 CGAATGATTC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 74 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:104904592 original size:28 final size:28
Alignment explanation
Indices: 104904561--104904770 Score: 213
Period size: 28 Copynumber: 7.4 Consensus size: 28
104904551 GTGAACATAG
*
104904561 GCACTGTGTGTGTGAGTTCCGTTACCGA
1 GCACTGTGTGTGCGAGTTCCGTTACCGA
* * ***
104904589 GCACTGTGTGTGCGAGATCTGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTTACCGA
*
104904617 GGCACTGTGTGTGCGAGTTCCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTTACCGA
* * ***
104904646 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTTACCGA
*
104904674 GGCACTGTGTGTGCGAGTTCCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTTACCGA
* * ***
104904703 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTTACCGA
* *
104904731 GGCACTGTGTGTGCGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTTACCGA
104904760 GCACTGTGTGT
1 GCACTGTGTGT
104904771 CAAGATCGGT
Statistics
Matches: 142, Mismatches: 37, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
28 77 0.54
29 65 0.46
ACGTcount: A:0.16, C:0.20, G:0.35, T:0.30
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTTACCGA
Found at i:104904628 original size:57 final size:57
Alignment explanation
Indices: 104904559--104904801 Score: 407
Period size: 57 Copynumber: 4.2 Consensus size: 57
104904549 AAGTGAACAT
* * *
104904559 AGGCACTGTGTGTGTGAGTTCCGTTACCGAGCACTGTGTGTGCGAGATCTGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
104904616 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
104904673 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
104904730 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGT-CAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
104904786 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
104904802 AAATGAGATC
Statistics
Matches: 178, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
56 20 0.11
57 151 0.85
58 7 0.04
ACGTcount: A:0.16, C:0.19, G:0.36, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:104906933 original size:93 final size:93
Alignment explanation
Indices: 104906821--104906992 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
104906811 CGCCCATAAG
* *
104906821 CGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGAATCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
104906886 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * *
104906914 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
*
104906979 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
104906993 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:104906989 original size:46 final size:46
Alignment explanation
Indices: 104906814--104906989 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
104906804 TGTAACCCGC
* * * *
104906814 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
104906860 CCATAAGTGAACTCGGAATCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
104906906 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
104906953 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
104906990 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:104907008 original size:46 final size:46
Alignment explanation
Indices: 104906822--104907008 Score: 120
Period size: 46 Copynumber: 4.0 Consensus size: 46
104906812 GCCCATAAGC
* ** * *
104906822 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCC-T-AGT
* *
104906868 GAACTCGGAATCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT--C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATC-CTAGT
* * * * *
104906915 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCAACCATCCTAGT
*
104906961 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
104907007 GA
1 GA
104907009 CATGTCACTT
Statistics
Matches: 110, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
44 9 0.08
45 1 0.01
46 60 0.55
47 29 0.26
49 4 0.04
50 6 0.05
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
Found at i:104912536 original size:28 final size:28
Alignment explanation
Indices: 104912495--104912601 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
104912485 GCAATCAAAT
*
104912495 ATGATACTTAGTGTACGAAATATTGAGA
1 ATGACACTTAGTGTACGAAATATTGAGA
*
104912523 ATGACACTTGGTGTACGAAATATTGAGA
1 ATGACACTTAGTGTACGAAATATTGAGA
* * *
104912551 ATGTCACTTAGTGTGCGAGATATTGAGA
1 ATGACACTTAGTGTACGAAATATTGAGA
* *
104912579 ATGACACTTAGTGTGCAAAATAT
1 ATGACACTTAGTGTACGAAATAT
104912602 CGAATGATTC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 70 1.00
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (28 bp):
ATGACACTTAGTGTACGAAATATTGAGA
Found at i:104925138 original size:7 final size:7
Alignment explanation
Indices: 104925122--104925175 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
104925112 AACTTAAACT
104925122 TGAAAAA
1 TGAAAAA
*
104925129 TGAAACA
1 TGAAAAA
104925136 TGAAAAA
1 TGAAAAA
104925143 TG-AAAA
1 TGAAAAA
104925149 --AAAAA
1 TGAAAAA
*
104925154 TGGAAAA
1 TGAAAAA
*
104925161 TGGAAAA
1 TGAAAAA
*
104925168 TGGAAAA
1 TGAAAAA
104925175 T
1 T
104925176 AGATTATATG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
5 4 0.10
6 4 0.10
7 33 0.80
ACGTcount: A:0.65, C:0.02, G:0.19, T:0.15
Consensus pattern (7 bp):
TGAAAAA
Found at i:104925139 original size:14 final size:14
Alignment explanation
Indices: 104925117--104925147 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
104925107 TAATTAACTT
*
104925117 AAACTTGAAAAATG
1 AAACATGAAAAATG
104925131 AAACATGAAAAATG
1 AAACATGAAAAATG
104925145 AAA
1 AAA
104925148 AAAAAATGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (14 bp):
AAACATGAAAAATG
Found at i:104925155 original size:25 final size:25
Alignment explanation
Indices: 104925124--104925174 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
104925114 CTTAAACTTG
104925124 AAAAAT-GAAACATGAAAAATGAAAA
1 AAAAATGGAAA-ATGAAAAATGAAAA
* *
104925149 AAAAATGGAAAATGGAAAATGGAAA
1 AAAAATGGAAAATGAAAAATGAAAA
104925174 A
1 A
104925175 TAGATTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.69, C:0.02, G:0.18, T:0.12
Consensus pattern (25 bp):
AAAAATGGAAAATGAAAAATGAAAA
Found at i:104929700 original size:22 final size:21
Alignment explanation
Indices: 104929667--104929709 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
104929657 TAACTTCTTA
*
104929667 TATTTTTCGAATTTATTTTAAT
1 TATTTTTCGAATAT-TTTTAAT
104929689 TATTATTT-GAATATTTTTAAT
1 TATT-TTTCGAATATTTTTAAT
104929710 AAATTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 7 0.37
22 9 0.47
23 3 0.16
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (21 bp):
TATTTTTCGAATATTTTTAAT
Found at i:104931289 original size:110 final size:110
Alignment explanation
Indices: 104931096--104931315 Score: 440
Period size: 110 Copynumber: 2.0 Consensus size: 110
104931086 GTCTCCTCCA
104931096 AGCCCTATCACATGTGAAGAATAAGTGTTGAATCGATTCTAAATCATTGTAACAAAAACATGAGC
1 AGCCCTATCACATGTGAAGAATAAGTGTTGAATCGATTCTAAATCATTGTAACAAAAACATGAGC
104931161 AGAAGAAGCGAAGATAATTCCTCTCTTAGAGTGTGCTTGATTGTT
66 AGAAGAAGCGAAGATAATTCCTCTCTTAGAGTGTGCTTGATTGTT
104931206 AGCCCTATCACATGTGAAGAATAAGTGTTGAATCGATTCTAAATCATTGTAACAAAAACATGAGC
1 AGCCCTATCACATGTGAAGAATAAGTGTTGAATCGATTCTAAATCATTGTAACAAAAACATGAGC
104931271 AGAAGAAGCGAAGATAATTCCTCTCTTAGAGTGTGCTTGATTGTT
66 AGAAGAAGCGAAGATAATTCCTCTCTTAGAGTGTGCTTGATTGTT
104931316 TGAAAAAGTA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 110 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.29
Consensus pattern (110 bp):
AGCCCTATCACATGTGAAGAATAAGTGTTGAATCGATTCTAAATCATTGTAACAAAAACATGAGC
AGAAGAAGCGAAGATAATTCCTCTCTTAGAGTGTGCTTGATTGTT
Found at i:104935057 original size:30 final size:31
Alignment explanation
Indices: 104934996--104935063 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
104934986 TCAAAATTTT
** **
104934996 ATATATAAAATTACGCGTTAAATTAAAGTTC
1 ATATATAAAATTACGAATTAAACCAAAGTTC
*
104935027 ATATATAAAATTAC-AATTAAACCAATGTTC
1 ATATATAAAATTACGAATTAAACCAAAGTTC
*
104935057 ATGTATA
1 ATATATA
104935064 TTTTTTAGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
30 17 0.55
31 14 0.45
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.35
Consensus pattern (31 bp):
ATATATAAAATTACGAATTAAACCAAAGTTC
Found at i:104939661 original size:28 final size:28
Alignment explanation
Indices: 104939621--104939674 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
104939611 AAGTGTAGAG
104939621 TATCAAGTTCTTTACAATGTAATAATGT
1 TATCAAGTTCTTTACAATGTAATAATGT
104939649 TATCAAGTTCTTTACAATGTAATAAT
1 TATCAAGTTCTTTACAATGTAATAAT
104939675 CCTATGTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (28 bp):
TATCAAGTTCTTTACAATGTAATAATGT
Found at i:104950052 original size:13 final size:13
Alignment explanation
Indices: 104950034--104950058 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104950024 GACAGCTGTC
104950034 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
104950047 TTTTTTTTTCTT
1 TTTTTTTTTCTT
104950059 GGCCAGTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTTTTTTTCTTT
Found at i:104959741 original size:12 final size:12
Alignment explanation
Indices: 104959724--104959748 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
104959714 GGTGTTCATT
104959724 CGGTTAACCGAC
1 CGGTTAACCGAC
104959736 CGGTTAACCGAC
1 CGGTTAACCGAC
104959748 C
1 C
104959749 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:104959923 original size:9 final size:9
Alignment explanation
Indices: 104959909--104959987 Score: 131
Period size: 9 Copynumber: 8.8 Consensus size: 9
104959899 TTTGGTTAAA
104959909 AATTACCCG
1 AATTACCCG
104959918 AATTACCCG
1 AATTACCCG
104959927 AATTACCCG
1 AATTACCCG
104959936 AATTACCCG
1 AATTACCCG
104959945 AATTACCCG
1 AATTACCCG
*
104959954 AATTAACCG
1 AATTACCCG
*
104959963 AATTAACCG
1 AATTACCCG
*
104959972 AATTAACCG
1 AATTACCCG
104959981 AATTACC
1 AATTACC
104959988 GAAAAATACC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 68 1.00
ACGTcount: A:0.38, C:0.29, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:104967128 original size:18 final size:17
Alignment explanation
Indices: 104967107--104967153 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
104967097 TGAATATTTG
104967107 TTTTAAATAAATAATATA
1 TTTTAAATAAATAATA-A
*
104967125 TTTTTAATAAATAATAA
1 TTTTAAATAAATAATAA
104967142 TTATTAATATAA
1 TT-TTAA-ATAA
104967154 TGATATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 18 0.72
19 4 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTTAAATAAATAATAA
Found at i:104970333 original size:17 final size:17
Alignment explanation
Indices: 104970311--104970359 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
104970301 AAAATTAAAT
104970311 TTAAATGAAATAAAAAA
1 TTAAATGAAATAAAAAA
*
104970328 TTAAAT-AAATAGATAAA
1 TTAAATGAAATA-AAAAA
104970345 TTAAAATG-AATAAAA
1 TT-AAATGAAATAAAA
104970360 TTGGTAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 5 0.19
17 14 0.52
18 8 0.30
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (17 bp):
TTAAATGAAATAAAAAA
Found at i:104970715 original size:30 final size:29
Alignment explanation
Indices: 104970670--104970738 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
104970660 AAATAAATAG
104970670 AAAAAT-ATATAAAATTATTAAATATTAAATT
1 AAAAATAATATAAAATTATT---TATTAAATT
*
104970701 -AAAATAATAT-AAATTATTTTTTAAATT
1 AAAAATAATATAAAATTATTTATTAAATT
104970728 AAAAATAATAT
1 AAAAATAATAT
104970739 TGGCGGAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
27 8 0.23
28 10 0.29
30 13 0.37
31 4 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (29 bp):
AAAAATAATATAAAATTATTTATTAAATT
Found at i:104972498 original size:24 final size:25
Alignment explanation
Indices: 104972451--104972501 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
104972441 ATATATGTTC
*
104972451 ATAATATATAAAACATACATATAAT
1 ATAATATATAAAACATACACATAAT
**
104972476 ATAATAT-TAAAACATTTACATAAT
1 ATAATATATAAAACATACACATAAT
104972500 AT
1 AT
104972502 GTACACACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAATATATAAAACATACACATAAT
Found at i:104972598 original size:21 final size:21
Alignment explanation
Indices: 104972574--104972613 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
104972564 AAGATATACT
*
104972574 TATATAAATATATATTAAAGA
1 TATATAAATATATAATAAAGA
*
104972595 TATATACATATATAATAAA
1 TATATAAATATATAATAAA
104972614 ATGCATGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (21 bp):
TATATAAATATATAATAAAGA
Found at i:104973606 original size:23 final size:20
Alignment explanation
Indices: 104973560--104973614 Score: 58
Period size: 23 Copynumber: 2.6 Consensus size: 20
104973550 AAGGTAAAAC
104973560 TTTATTT-TTTTATTTTTTT
1 TTTATTTGTTTTATTTTTTT
*
104973579 ATTATTTGTTTTATATTTCCTTT
1 TTTATTTGTTTTAT-TTT--TTT
*
104973602 TTTATATGTTTTA
1 TTTATTTGTTTTA
104973615 GTATATGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 6 0.21
20 6 0.21
21 3 0.10
23 14 0.48
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (20 bp):
TTTATTTGTTTTATTTTTTT
Found at i:104974998 original size:79 final size:78
Alignment explanation
Indices: 104974829--104974993 Score: 244
Period size: 79 Copynumber: 2.1 Consensus size: 78
104974819 AAAAAAACGA
* * *
104974829 AAATTGAAAATACCTCAGCGTGCGAGCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TAT
*
104974894 TTTTTGAAAAGAAT
65 TTTTTGAAAAGAAG
* *
104974908 AACTTGAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATAAGTT-A-ATT
1 AAATTGAAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATATT
*
104974971 TTTTGAGAAGAAG
66 TTTTGAAAAGAAG
104974984 AAATTGAAAA
1 AAATTGAAAA
104974994 AAATATCTAT
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
76 22 0.28
78 1 0.01
79 55 0.71
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (78 bp):
AAATTGAAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATATT
TTTTGAAAAGAAG
Found at i:104975171 original size:74 final size:74
Alignment explanation
Indices: 104975002--104975230 Score: 320
Period size: 74 Copynumber: 3.1 Consensus size: 74
104974992 AAAAATATCT
* * * * * * *
104975002 ATTGAAAATACCTCAGCGTAT--GACCTGAGGCTTAACTCACCTCTCGTAATATGAGTTGATTTT
1 ATTGAAAATACCTC-GC-TATGCGACCCGAGGCTCAATTCACCTTTAGCAATATGAATTGATTTT
104975065 TG-AAACATAA
64 TGAAAACATAA
*
104975075 ATTGAAAATACCTCGCTATGCGACCCGATGCTCAATTCACCTTTAGCAATATGAATTGATTTTTG
1 ATTGAAAATACCTCGCTATGCGACCCGAGGCTCAATTCACCTTTAGCAATATGAATTGATTTTTG
*
104975140 AAAACGTAA
66 AAAACATAA
*
104975149 ATTGAAAATACCTCGCTATGCGACCCGAGGCTCAATTCACCTTTAGCACTATGAATTGATTTTTG
1 ATTGAAAATACCTCGCTATGCGACCCGAGGCTCAATTCACCTTTAGCAATATGAATTGATTTTTG
*
104975214 AAAACATAT
66 AAAACATAA
104975223 ATTGAAAA
1 ATTGAAAA
104975231 ACAAAAATCA
Statistics
Matches: 140, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
71 3 0.02
72 2 0.01
73 50 0.36
74 85 0.61
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (74 bp):
ATTGAAAATACCTCGCTATGCGACCCGAGGCTCAATTCACCTTTAGCAATATGAATTGATTTTTG
AAAACATAA
Found at i:104975404 original size:73 final size:72
Alignment explanation
Indices: 104975241--104975445 Score: 320
Period size: 73 Copynumber: 2.8 Consensus size: 72
104975231 ACAAAAATCA
* * * *
104975241 AAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAGTATGAGTTGATTTTGACAAATA
1 AAAATACCTCAGCATGCCCCGAGGCTCAACTCACATCTCACAATATGAGTTGATTTTGACAAATA
104975306 GTAATTG
66 GTAATTG
* * *
104975313 AAAATACCTCAGCATGCCCCGAGGCTCAACTCACTTCCCGCAATATGAGTTGATTTTTGACAAAT
1 AAAATACCTCAGCATGCCCCGAGGCTCAACTCACATCTCACAATATGAGTTGA-TTTTGACAAAT
104975378 AGTAATTG
65 AGTAATTG
*
104975386 AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACATCTCACAATATGAGTTGAATTTTGA
1 AAAATACCTCAGCATGCCCCGAGGCTCAACTCACATCTCACAATATGAGTTG-ATTTTGA
104975446 AACAGAAATA
Statistics
Matches: 121, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
72 47 0.39
73 73 0.60
74 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (72 bp):
AAAATACCTCAGCATGCCCCGAGGCTCAACTCACATCTCACAATATGAGTTGATTTTGACAAATA
GTAATTG
Found at i:104984883 original size:53 final size:52
Alignment explanation
Indices: 104984820--104984979 Score: 161
Period size: 53 Copynumber: 3.1 Consensus size: 52
104984810 ATGGCATCGG
*
104984820 TGTGATATGTGCTTCCATATAAGACAATAACTGGGTTATGACATCAGTGTAA
1 TGTGATATGTGCTTCCATATAAGACAATAACTGGGATATGACATCAGTGTAA
** *
104984872 TGTGATTATGTGCTTCCATATAAGATTATATA-TGAGATATGACATC-G-G---
1 TGTGA-TATGTGCTTCCATATAAGACAATA-ACTGGGATATGACATCAGTGTAA
* ** * *
104984920 TGTGATATGTGATTCTTTATAAGACCATATCTGGGATATGACATCAGTGTGATA
1 TGTGATATGTGCTTCCATATAAGACAATAACTGGGATATGACATCAGTGT-A-A
104984974 TGTGAT
1 TGTGAT
104984980 CCGTGTAAGA
Statistics
Matches: 87, Mismatches: 11, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
47 32 0.37
48 6 0.07
49 1 0.01
51 1 0.01
52 6 0.07
53 34 0.39
54 7 0.08
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (52 bp):
TGTGATATGTGCTTCCATATAAGACAATAACTGGGATATGACATCAGTGTAA
Found at i:104984978 original size:47 final size:47
Alignment explanation
Indices: 104984772--104984993 Score: 187
Period size: 47 Copynumber: 4.6 Consensus size: 47
104984762 CATGGCAACA
* * * * *
104984772 TGTGATATGTGATTTCCGTATAAGACCGTAGT-TGGGCTATGGCATCGG
1 TGTGATATGTGA-TTCCATATAAGACCATA-TCTGGGATATGACATCAG
* * * *
104984820 TGTGATATGTGCTTCCATATAAGACAATAACTGGGTTATGACATCAGTG
1 TGTGATATGTGATTCCATATAAGACCATATCTGGGATATGACATCA--G
* ** * * *
104984869 TAATGTGATTATGTGCTTCCATATAAGATTATATATGAGATATGACATCGG
1 ---TGTGA-TATGTGATTCCATATAAGACCATATCTGGGATATGACATCAG
**
104984920 TGTGATATGTGATTCTTTATAAGACCATATCTGGGATATGACATCAG
1 TGTGATATGTGATTCCATATAAGACCATATCTGGGATATGACATCAG
* *
104984967 TGTGATATGTGA-TCCGTGTAAGACCAT
1 TGTGATATGTGATTCCATATAAGACCAT
104984994 GGTTGGGCTA
Statistics
Matches: 141, Mismatches: 26, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
46 12 0.09
47 72 0.51
48 16 0.11
49 1 0.01
51 1 0.01
52 5 0.04
53 34 0.24
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (47 bp):
TGTGATATGTGATTCCATATAAGACCATATCTGGGATATGACATCAG
Found at i:104987548 original size:20 final size:20
Alignment explanation
Indices: 104987512--104987549 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
104987502 AATTTTTAGA
*
104987512 ATTTAAAAATGAAAAAAACC
1 ATTTAAAAATAAAAAAAACC
104987532 ATTTAAAAA-AAATAAAAA
1 ATTTAAAAATAAA-AAAAA
104987550 TTATTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.21
Consensus pattern (20 bp):
ATTTAAAAATAAAAAAAACC
Found at i:104995319 original size:40 final size:40
Alignment explanation
Indices: 104995262--104995341 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
104995252 GTTATCACTT
104995262 GATGATGGTTCAATTCTAGTTGGGATAAAAGTTAAACTGA
1 GATGATGGTTCAATTCTAGTTGGGATAAAAGTTAAACTGA
*
104995302 GATGATGGTTCACTTCTAGTTGGGATAAAAGTTAAACTGA
1 GATGATGGTTCAATTCTAGTTGGGATAAAAGTTAAACTGA
104995342 CTTTTCTACG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.33
Consensus pattern (40 bp):
GATGATGGTTCAATTCTAGTTGGGATAAAAGTTAAACTGA
Found at i:104997697 original size:3 final size:3
Alignment explanation
Indices: 104997689--104997785 Score: 56
Period size: 3 Copynumber: 31.3 Consensus size: 3
104997679 TGAATTTCTA
* * * *
104997689 TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAT GTACA TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T TAT
* * *
104997737 TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TA- TATT TAC TAT TAT
1 TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
104997782 TAT T
1 TAT T
104997786 TATAAATATT
Statistics
Matches: 72, Mismatches: 13, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
2 5 0.07
3 56 0.78
4 11 0.15
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:104997715 original size:13 final size:13
Alignment explanation
Indices: 104997689--104997785 Score: 62
Period size: 12 Copynumber: 7.5 Consensus size: 13
104997679 TGAATTTCTA
104997689 TATTATTA-TTAT
1 TATTATTACTTAT
*
104997701 TATTGTTACTTAT
1 TATTATTACTTAT
104997714 TATTATTACTGTTAT
1 TATTATTAC--TTAT
* *
104997729 GTACATATTATTTA-
1 -TA-TTATTACTTAT
* *
104997743 TACTA-TACTTAA
1 TATTATTACTTAT
104997755 TATTATTA-TTAT
1 TATTATTACTTAT
104997767 TA-TATTTAC-TAT
1 TATTA-TTACTTAT
104997779 TATTATT
1 TATTATT
104997786 TATAAATATT
Statistics
Matches: 67, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
11 7 0.10
12 28 0.42
13 18 0.27
15 7 0.10
16 2 0.03
17 5 0.07
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (13 bp):
TATTATTACTTAT
Found at i:105000728 original size:53 final size:53
Alignment explanation
Indices: 105000576--105000729 Score: 174
Period size: 52 Copynumber: 2.9 Consensus size: 53
105000566 TGACGGAAAA
105000576 GATGTGATATGT-ACTTCCGTATAAGACCATAGT-TGGGCTATGGCATCGGTAC
1 GATGTGATATGTGACTTCCGTATAAGACCATA-TCTGGGCTATGGCATCGGTAC
* * * * **
105000628 AATGTGAT-T-CGAGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGT
1 GATGTGATATGTGACTT-CCGTATAAGACCATATCTGGGCTATGGCATCGGTAC
* *
105000680 GATGTGATAATGTGA-TTCCGTATAAGACCATATCTGGGATATGACATCGG
1 GATGTGAT-ATGTGACTTCCGTATAAGACCATATCTGGGCTATGGCATCGG
105000730 CATGTTATGT
Statistics
Matches: 85, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
51 4 0.05
52 46 0.54
53 30 0.35
54 3 0.04
55 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (53 bp):
GATGTGATATGTGACTTCCGTATAAGACCATATCTGGGCTATGGCATCGGTAC
Found at i:105012026 original size:20 final size:20
Alignment explanation
Indices: 105012001--105012050 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
105011991 TGGCTTAAAA
105012001 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
105012021 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
105012038 GTGGTAGTGGATT
1 TTGGTAGTGGATT
105012051 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:105016664 original size:20 final size:20
Alignment explanation
Indices: 105016639--105016688 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
105016629 TGGCTTAAAA
105016639 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
105016659 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
105016676 GTGGTAGTGGATT
1 TTGGTAGTGGATT
105016689 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:105021948 original size:13 final size:13
Alignment explanation
Indices: 105021930--105021954 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105021920 AATATACTTT
105021930 ATTTTTAAATATA
1 ATTTTTAAATATA
105021943 ATTTTTAAATAT
1 ATTTTTAAATAT
105021955 TTTTAAATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTTTAAATATA
Found at i:105022486 original size:20 final size:20
Alignment explanation
Indices: 105022461--105022523 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
105022451 TTTTAAATAC
105022461 AATTTTAAATAATTTATTAA
1 AATTTTAAATAATTTATTAA
* * *
105022481 AATTTTTATTCA-TT-TTAA
1 AATTTTAAATAATTTATTAA
* *
105022499 AAGTTTTAGATAATATATTAA
1 AA-TTTTAAATAATTTATTAA
105022520 AATT
1 AATT
105022524 CAAGTCTAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 6 0.19
19 8 0.25
20 12 0.38
21 6 0.19
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (20 bp):
AATTTTAAATAATTTATTAA
Found at i:105022487 original size:21 final size:21
Alignment explanation
Indices: 105022463--105022523 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
105022453 TTAAATACAA
105022463 TTTTAAATAATTTATTAAAAT
1 TTTTAAATAATTTATTAAAAT
* * *
105022484 TTTT-ATTCA-TT-TTAAAAG
1 TTTTAAATAATTTATTAAAAT
* *
105022502 TTTTAGATAATATATTAAAAT
1 TTTTAAATAATTTATTAAAAT
105022523 T
1 T
105022524 CAAGTCTAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
18 10 0.34
19 4 0.14
20 4 0.14
21 11 0.38
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (21 bp):
TTTTAAATAATTTATTAAAAT
Found at i:105025090 original size:3 final size:3
Alignment explanation
Indices: 105025067--105025112 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
105025057 TTATTGTATC
* * *
105025067 TAT TAA TAT TAT CAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
105025113 TTCATATATT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:105025824 original size:16 final size:16
Alignment explanation
Indices: 105025798--105025837 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
105025788 AATTATACGT
*
105025798 GTATATATTTTTATATA
1 GTAT-TATTTTCATATA
105025815 GTATTATTTTCATATA
1 GTATTATTTTCATATA
*
105025831 ATATTAT
1 GTATTAT
105025838 ACTCATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (16 bp):
GTATTATTTTCATATA
Found at i:105026020 original size:21 final size:21
Alignment explanation
Indices: 105025987--105026033 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 21
105025977 ATATATATTG
105025987 TATATGTTCATTTATACTATGTA
1 TATATGTTCA-TT-TACTATGTA
*
105026010 TATATG-T-ATTTAGTATGTA
1 TATATGTTCATTTACTATGTA
105026029 TATAT
1 TATAT
105026034 TTAGTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 13 0.57
20 2 0.09
21 1 0.04
22 1 0.04
23 6 0.26
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (21 bp):
TATATGTTCATTTACTATGTA
Found at i:105026025 original size:15 final size:15
Alignment explanation
Indices: 105026007--105026040 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
105025997 TTTATACTAT
*
105026007 GTATATATGTATTTA
1 GTATATATATATTTA
*
105026022 GTATGTATATATTTA
1 GTATATATATATTTA
105026037 GTAT
1 GTAT
105026041 TATTATACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (15 bp):
GTATATATATATTTA
Found at i:105026159 original size:24 final size:24
Alignment explanation
Indices: 105026124--105026180 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
105026114 TTTTTACATC
105026124 TTATATC-T-TATATATGTATATT
1 TTATATCTTATATATATGTATATT
105026146 TTATATCTTATATATATGTATATT
1 TTATATCTTATATATATGTATATT
*
105026170 TTATATGTTAT
1 TTATATCTTAT
105026181 GTACATACTC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 7 0.22
23 1 0.03
24 24 0.75
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (24 bp):
TTATATCTTATATATATGTATATT
Found at i:105026176 original size:13 final size:13
Alignment explanation
Indices: 105026134--105026177 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
105026124 TTATATCTTA
105026134 TATATGTATATTT
1 TATATGTATATTT
* *
105026147 TATATCT-TA-TA
1 TATATGTATATTT
105026158 TATATGTATATTT
1 TATATGTATATTT
105026171 TATATGT
1 TATATGT
105026178 TATGTACATA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 7 0.28
12 4 0.16
13 14 0.56
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (13 bp):
TATATGTATATTT
Found at i:105030083 original size:46 final size:46
Alignment explanation
Indices: 105030028--105030121 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
105030018 TTCTCTAGAC
105030028 GTATTTGGTTAACCGAATGTAATTACATTATAATTTTCTATGTCAT
1 GTATTTGGTTAACCGAATGTAATTACATTATAATTTTCTATGTCAT
*
105030074 GTATTTGGTTAACCTAATGTAATTACATTATAATTTTCTATGTCAT
1 GTATTTGGTTAACCGAATGTAATTACATTATAATTTTCTATGTCAT
105030120 GT
1 GT
105030122 TCGATAGTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.47
Consensus pattern (46 bp):
GTATTTGGTTAACCGAATGTAATTACATTATAATTTTCTATGTCAT
Found at i:105040159 original size:37 final size:37
Alignment explanation
Indices: 105040042--105040159 Score: 89
Period size: 38 Copynumber: 3.1 Consensus size: 37
105040032 TATAATGATT
105040042 TTGAAGTTCTTGAACTCTCTGATTTATCGTGCATTTA
1 TTGAAGTTCTTGAACTCTCTGATTTATCGTGCATTTA
* * * * * * * **
105040079 TTGAAATTGATCGGAC-CT-TACATTATTTCTTATATGATT-
1 TTGAAGTT-CTTGAACTCTCT-GATT-TATCGTGCAT--TTA
105040118 TTGAAGTTCTTGAACTCTCTGATTTATCGTGCATTTA
1 TTGAAGTTCTTGAACTCTCTGATTTATCGTGCATTTA
105040155 TTGAA
1 TTGAA
105040160 ATTGATCGGA
Statistics
Matches: 55, Mismatches: 18, Indels: 16
0.62 0.20 0.18
Matches are distributed among these distances:
36 3 0.05
37 17 0.31
38 20 0.36
39 12 0.22
40 3 0.05
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (37 bp):
TTGAAGTTCTTGAACTCTCTGATTTATCGTGCATTTA
Found at i:105040162 original size:76 final size:76
Alignment explanation
Indices: 105040036--105040187 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
105040026 GCATTATATA
105040036 ATGATTTTGAAGTTCTTGAACTCTCTGATTTATCGTGCATTTATTGAAATTGATCGGACCTTACA
1 ATGATTTTGAAGTTCTTGAACTCTCTGATTTATCGTGCATTTATTGAAATTGATCGGACCTTACA
105040101 TTATTTCTTAT
66 TTATTTCTTAT
105040112 ATGATTTTGAAGTTCTTGAACTCTCTGATTTATCGTGCATTTATTGAAATTGATCGGACCTTACA
1 ATGATTTTGAAGTTCTTGAACTCTCTGATTTATCGTGCATTTATTGAAATTGATCGGACCTTACA
105040177 TTATTTCTTAT
66 TTATTTCTTAT
105040188 CAAAATTGAT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.46
Consensus pattern (76 bp):
ATGATTTTGAAGTTCTTGAACTCTCTGATTTATCGTGCATTTATTGAAATTGATCGGACCTTACA
TTATTTCTTAT
Found at i:105047560 original size:24 final size:25
Alignment explanation
Indices: 105047522--105047576 Score: 94
Period size: 24 Copynumber: 2.2 Consensus size: 25
105047512 TAATTCAAAT
105047522 ATATAAACTATATTTTAAATATTAAA
1 ATAT-AACTATATTTTAAATATTAAA
105047548 ATATAAC-ATATTTTAAATATTAAA
1 ATATAACTATATTTTAAATATTAAA
105047572 ATATA
1 ATATA
105047577 TAATATCACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 22 0.76
25 3 0.10
26 4 0.14
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (25 bp):
ATATAACTATATTTTAAATATTAAA
Found at i:105047577 original size:26 final size:26
Alignment explanation
Indices: 105047518--105047579 Score: 92
Period size: 24 Copynumber: 2.4 Consensus size: 26
105047508 AAATTAATTC
105047518 AAATATATAAACTATATTTTAAATATT
1 AAATATAT-AACTATATTTTAAATATT
105047545 AAA-ATATAAC-ATATTTTAAATATT
1 AAATATATAACTATATTTTAAATATT
105047569 AAAATATATAA
1 -AAATATATAA
105047580 TATCACATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
24 14 0.42
25 6 0.18
26 10 0.30
27 3 0.09
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.40
Consensus pattern (26 bp):
AAATATATAACTATATTTTAAATATT
Found at i:105047582 original size:31 final size:32
Alignment explanation
Indices: 105047538--105047597 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
105047528 ACTATATTTT
*
105047538 AAATATTAAAATATAACATATTTTAAATATTA
1 AAATATTAAAATATAACATATTTAAAATATTA
* *
105047570 AAATA-TATAATATCACATATTTAAAATA
1 AAATATTAAAATATAACATATTTAAAATA
105047598 AATTTCAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (32 bp):
AAATATTAAAATATAACATATTTAAAATATTA
Found at i:105051450 original size:17 final size:18
Alignment explanation
Indices: 105051409--105051455 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
105051399 GTTTATATAT
105051409 TTTTAAT-TTTTATTTAC
1 TTTTAATATTTTATTTAC
105051426 TTTT--TATTTTATTTA-
1 TTTTAATATTTTATTTAC
*
105051441 TTTTAATATTATATT
1 TTTTAATATTTTATT
105051456 ATTCTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 5 0.19
16 9 0.35
17 12 0.46
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTAATATTTTATTTAC
Found at i:105069433 original size:1 final size:1
Alignment explanation
Indices: 105069427--105069454 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
105069417 GCAAAACAAG
105069427 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
105069455 GAGGTTAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:105072669 original size:4 final size:4
Alignment explanation
Indices: 105072660--105072687 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
105072650 TAAGAAGAAG
105072660 AAGA AAGA AAGA AAGA AAGA AAGA AAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA
105072688 GCTAATTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:105073814 original size:30 final size:30
Alignment explanation
Indices: 105073773--105073832 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
105073763 GAGTATCCAA
* *
105073773 ACTAAATCCAATTGGTAATAGAAGGAGGAC
1 ACTAAAGCCAATTCGTAATAGAAGGAGGAC
*
105073803 ACTAAAGCCAATTCGTAATCGAAGGAGGAC
1 ACTAAAGCCAATTCGTAATAGAAGGAGGAC
105073833 TTAACTCGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.18
Consensus pattern (30 bp):
ACTAAAGCCAATTCGTAATAGAAGGAGGAC
Found at i:105084023 original size:14 final size:14
Alignment explanation
Indices: 105084004--105084030 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
105083994 TATATGATTT
105084004 TAAATTTTTTTACA
1 TAAATTTTTTTACA
105084018 TAAATTTTTTTAC
1 TAAATTTTTTTAC
105084031 TATTATTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
TAAATTTTTTTACA
Found at i:105092035 original size:28 final size:28
Alignment explanation
Indices: 105091999--105092065 Score: 93
Period size: 27 Copynumber: 2.4 Consensus size: 28
105091989 AAACTTTTAA
*
105091999 TATTTAAAAATTTAAAAATTAT-TAATAT
1 TATTTAAAAATATAAAAATTATAT-ATAT
105092027 TA-TTAAAAATATAAAAATTATATATAT
1 TATTTAAAAATATAAAAATTATATATAT
*
105092054 TTTTTAAAAATA
1 TATTTAAAAATA
105092066 ATAGCTTATG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 23 0.66
28 12 0.34
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
TATTTAAAAATATAAAAATTATATATAT
Found at i:105092041 original size:27 final size:26
Alignment explanation
Indices: 105091987--105092065 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
105091977 GTTGTTTATC
*
105091987 AAAAACTT-TTAATA-TTTAAAAATTT
1 AAAAA-TTATTAATATTTTAAAAATAT
105092012 AAAAATTATTAATATTATTAAAAATAT
1 AAAAATTATTAATATT-TTAAAAATAT
*
105092039 AAAAATTATATATATTTTTTAAAAATA
1 AAAAATTAT-TA-ATATTTTAAAAATA
105092066 ATAGCTTATG
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.04
25 11 0.23
26 1 0.02
27 18 0.38
28 11 0.23
29 4 0.09
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (26 bp):
AAAAATTATTAATATTTTAAAAATAT
Found at i:105092046 original size:18 final size:19
Alignment explanation
Indices: 105092010--105092047 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
105092000 ATTTAAAAAT
* *
105092010 TTAAAAATTATTAATATTA
1 TTAAAAATTATAAAAATTA
105092029 TTAAAAA-TATAAAAATTA
1 TTAAAAATTATAAAAATTA
105092047 T
1 T
105092048 ATATATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TTAAAAATTATAAAAATTA
Found at i:105094671 original size:27 final size:27
Alignment explanation
Indices: 105094633--105094687 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
105094623 GAAAACAACG
105094633 TTATTAATAATTAAATTTCACATATTT
1 TTATTAATAATTAAATTTCACATATTT
*
105094660 TTATTAATAATTAATTTTCACATATTT
1 TTATTAATAATTAAATTTCACATATTT
105094687 T
1 T
105094688 CCAATTTCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (27 bp):
TTATTAATAATTAAATTTCACATATTT
Found at i:105095545 original size:23 final size:22
Alignment explanation
Indices: 105095519--105095566 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
105095509 ATGGAGAAGC
105095519 AAAACAAAATGAAA-AAAAAAGTT
1 AAAACAAAAT-AAAGAAAAAA-TT
* *
105095542 AAAAGAACATAAAGAAAAAATT
1 AAAACAAAATAAAGAAAAAATT
105095564 AAA
1 AAA
105095567 TTGCTCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.75, C:0.04, G:0.08, T:0.12
Consensus pattern (22 bp):
AAAACAAAATAAAGAAAAAATT
Found at i:105097718 original size:17 final size:17
Alignment explanation
Indices: 105097681--105097722 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
105097671 GTATTATTAA
*
105097681 AAAATTTAAATAACATT
1 AAAATTTTAATAACATT
105097698 -AAATTTTAATAA-AGTT
1 AAAATTTTAATAACA-TT
105097714 AAAATTTTA
1 AAAATTTTA
105097723 TCGTTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 1 0.05
16 13 0.59
17 8 0.36
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
AAAATTTTAATAACATT
Found at i:105100391 original size:3 final size:3
Alignment explanation
Indices: 105100383--105100412 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
105100373 CAATACTGAT
105100383 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
105100413 CAATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:105100842 original size:15 final size:15
Alignment explanation
Indices: 105100822--105100859 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
105100812 TCAAAATTAA
105100822 ATTTTTTTAATA-TC
1 ATTTTTTTAATATTC
*
105100836 TATTTTTATAATATTC
1 -ATTTTTTTAATATTC
105100852 ATTTTTTT
1 ATTTTTTT
105100860 CTTAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 18 0.90
16 2 0.10
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTTTTTAATATTC
Found at i:105103489 original size:23 final size:22
Alignment explanation
Indices: 105103438--105103489 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
105103428 CCTCGTCTTT
*
105103438 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
105103460 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
105103483 TTCTTTT
1 TTCTTTT
105103490 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:105112655 original size:29 final size:28
Alignment explanation
Indices: 105112599--105112662 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
105112589 AGGGGTATTA
* *
105112599 CATAATTAGGGACCATTTTATAATTTTT
1 CATAGTTAGGGACCATTTTATAACTTTT
* *
105112627 CATAGTTAGGTGATCATTTTGTAACTTTT
1 CATAGTTAGG-GACCATTTTATAACTTTT
105112656 CATAGTT
1 CATAGTT
105112663 GGATGACCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 9 0.29
29 22 0.71
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (28 bp):
CATAGTTAGGGACCATTTTATAACTTTT
Found at i:105113847 original size:51 final size:51
Alignment explanation
Indices: 105113776--105113937 Score: 216
Period size: 51 Copynumber: 3.0 Consensus size: 51
105113766 CTGATCACAT
105113776 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
105113827 TTATCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTTGC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCA-------C
* * * *
105113885 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
105113936 TT
1 TT
105113938 GTCATTGGTC
Statistics
Matches: 98, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
51 52 0.53
58 46 0.47
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:105113892 original size:58 final size:58
Alignment explanation
Indices: 105113830--105113939 Score: 184
Period size: 58 Copynumber: 1.9 Consensus size: 58
105113820 TTATCACTTA
*
105113830 TCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTTGCTTG
1 TCACTTATAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTTGCTTG
* * *
105113888 TCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTGT
1 TCACTTATAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
105113940 CATTGGTCAG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (58 bp):
TCACTTATAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTTGCTTG
Found at i:105114880 original size:35 final size:34
Alignment explanation
Indices: 105114841--105114928 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 34
105114831 TATGCTTACC
*
105114841 TATATTATTTTTTAATTTTTAAAAAATATTTATAT
1 TATATTATTTTTTAATATTTAAAAAAT-TTTATAT
* *
105114876 TATATTA--TTTTAATATTT-AATAATTTTATTT
1 TATATTATTTTTTAATATTTAAAAAATTTTATAT
*
105114907 TATATAATTATTTTAATATTTA
1 TATATTATT-TTTTAATATTTA
105114929 TATTAGAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
31 12 0.27
32 5 0.11
33 10 0.22
34 11 0.24
35 7 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (34 bp):
TATATTATTTTTTAATATTTAAAAAATTTTATAT
Found at i:105114915 original size:15 final size:15
Alignment explanation
Indices: 105114869--105114915 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
105114859 TTAAAAAATA
* *
105114869 TTTATATTATATTAT
1 TTTATTTTATATAAT
105114884 TTTAATATTTA-ATAAT
1 TTT-AT-TTTATATAAT
105114900 TTTATTTTATATAAT
1 TTTATTTTATATAAT
105114915 T
1 T
105114916 ATTTTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
14 4 0.15
15 11 0.41
16 9 0.33
17 3 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTATTTTATATAAT
Found at i:105130367 original size:12 final size:13
Alignment explanation
Indices: 105130338--105130362 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105130328 AAACATATTT
105130338 ATATTTTTTAAAA
1 ATATTTTTTAAAA
105130351 ATATTTTTTAAA
1 ATATTTTTTAAA
105130363 TTATTAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATATTTTTTAAAA
Found at i:105132121 original size:29 final size:29
Alignment explanation
Indices: 105132087--105132144 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
105132077 GGTAGAAATT
*
105132087 ATTTTTAGGAGAGTAGAAAT-TAAATTTTA
1 ATTTTTAGGAGAGTAAAAATAT-AATTTTA
* *
105132116 ATTTTTATGATAGTAAAAATATAATTTTA
1 ATTTTTAGGAGAGTAAAAATATAATTTTA
105132145 TTATTTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 24 0.96
30 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (29 bp):
ATTTTTAGGAGAGTAAAAATATAATTTTA
Found at i:105133502 original size:10 final size:10
Alignment explanation
Indices: 105133487--105133535 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
105133477 CCAAAATTAT
*
105133487 TATTTTAGAA
1 TATTTTAAAA
* *
105133497 TATTTTTATA
1 TATTTTAAAA
105133507 TATTTTAAAA
1 TATTTTAAAA
105133517 T-TTTTATAAA
1 TATTTTA-AAA
105133527 TATTTTAAA
1 TATTTTAAA
105133536 TTTTAATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
9 5 0.16
10 22 0.69
11 5 0.16
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (10 bp):
TATTTTAAAA
Found at i:105133521 original size:18 final size:18
Alignment explanation
Indices: 105133483--105133539 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 18
105133473 GGTCCCAAAA
105133483 TTAT-TATTTTAGAATATTT
1 TTATATATTTTA-AA-ATTT
105133502 TTATATATTTTAAAATTT
1 TTATATATTTTAAAATTT
105133520 TTATAAATATTTT-AAATTT
1 TTAT--ATATTTTAAAATTT
105133539 T
1 T
105133540 AATAAATATT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.23
19 13 0.37
20 14 0.40
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TTATATATTTTAAAATTT
Found at i:105133544 original size:19 final size:20
Alignment explanation
Indices: 105133506--105133550 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
105133496 ATATTTTTAT
*
105133506 ATATTTTAAAATTTTTATAA
1 ATATTTTAAAATTTTAATAA
105133526 ATATTTT-AAATTTTAATAA
1 ATATTTTAAAATTTTAATAA
105133545 ATATTT
1 ATATTT
105133551 GGATTTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
ATATTTTAAAATTTTAATAA
Found at i:105133558 original size:19 final size:19
Alignment explanation
Indices: 105133515--105133570 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
105133505 TATATTTTAA
*
105133515 AATTTTT-ATAAATATTTT
1 AATTTTTAATAAATATTTG
*
105133533 AAATTTTAATAAATATTTG
1 AATTTTTAATAAATATTTG
* *
105133552 GATTTTTAAAAAATTATTT
1 AATTTTTAATAAA-TATTT
105133571 TTAACTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
18 6 0.19
19 20 0.65
20 5 0.16
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (19 bp):
AATTTTTAATAAATATTTG
Found at i:105148481 original size:6 final size:6
Alignment explanation
Indices: 105148470--105148496 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
105148460 TTCTTCTATC
105148470 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
105148497 GGCTTCAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:105159007 original size:25 final size:25
Alignment explanation
Indices: 105158973--105159034 Score: 124
Period size: 25 Copynumber: 2.5 Consensus size: 25
105158963 AATCAGAAAC
105158973 CAAGTTACATCTCCGTGACGATTGA
1 CAAGTTACATCTCCGTGACGATTGA
105158998 CAAGTTACATCTCCGTGACGATTGA
1 CAAGTTACATCTCCGTGACGATTGA
105159023 CAAGTTACATCT
1 CAAGTTACATCT
105159035 TATGTGTGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (25 bp):
CAAGTTACATCTCCGTGACGATTGA
Found at i:105159687 original size:277 final size:277
Alignment explanation
Indices: 105159193--105159727 Score: 1061
Period size: 277 Copynumber: 1.9 Consensus size: 277
105159183 TTTCTTCACA
105159193 GTTCCTTAGGTTCTGGTTGCTTGGTTGAGAAGTATGAGATCAAATGAAAGTTAATTCCAGTATTT
1 GTTCCTTAGGTTCTGGTTGCTTGGTTGAGAAGTATGAGATCAAATGAAAGTTAATTCCAGTATTT
*
105159258 GTGGATATGCATATTAACTGCGTGTAGTTTAAGAGATAGTTACTCCAGTTAGGCGTTCCAGCAGA
66 GTGGATATGCATATTAACTGCGTGTAGTTTAAGAGATAGCTACTCCAGTTAGGCGTTCCAGCAGA
105159323 ATTAGAAACCAAGTTACATCTCCGTGACGATTGACAAGTTACATCTTATGTGTGTAACAGTAGCA
131 ATTAGAAACCAAGTTACATCTCCGTGACGATTGACAAGTTACATCTTATGTGTGTAACAGTAGCA
105159388 CTACTGTGCAATTCTAATGTGAATGAACCACTGTTGTTGGATGCAGACATTAGATTAGGACTTAA
196 CTACTGTGCAATTCTAATGTGAATGAACCACTGTTGTTGGATGCAGACATTAGATTAGGACTTAA
105159453 TTGTACTATTATTCATT
261 TTGTACTATTATTCATT
105159470 GTTCCTTAGGTTCTGGTTGCTTGGTTGAGAAGTATGAGATCAAATGAAAGTTAATTCCAGTATTT
1 GTTCCTTAGGTTCTGGTTGCTTGGTTGAGAAGTATGAGATCAAATGAAAGTTAATTCCAGTATTT
105159535 GTGGATATGCATATTAACTGCGTGTAGTTTAAGAGATAGCTACTCCAGTTAGGCGTTCCAGCAGA
66 GTGGATATGCATATTAACTGCGTGTAGTTTAAGAGATAGCTACTCCAGTTAGGCGTTCCAGCAGA
105159600 ATTAGAAACCAAGTTACATCTCCGTGACGATTGACAAGTTACATCTTATGTGTGTAACAGTAGCA
131 ATTAGAAACCAAGTTACATCTCCGTGACGATTGACAAGTTACATCTTATGTGTGTAACAGTAGCA
105159665 CTACTGTGCAATTCTAATGTGAATGAACCACTGTTGTTGGATGCAGACATTAGATTAGGACTT
196 CTACTGTGCAATTCTAATGTGAATGAACCACTGTTGTTGGATGCAGACATTAGATTAGGACTT
105159728 TGAATAACAC
Statistics
Matches: 257, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
277 257 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.33
Consensus pattern (277 bp):
GTTCCTTAGGTTCTGGTTGCTTGGTTGAGAAGTATGAGATCAAATGAAAGTTAATTCCAGTATTT
GTGGATATGCATATTAACTGCGTGTAGTTTAAGAGATAGCTACTCCAGTTAGGCGTTCCAGCAGA
ATTAGAAACCAAGTTACATCTCCGTGACGATTGACAAGTTACATCTTATGTGTGTAACAGTAGCA
CTACTGTGCAATTCTAATGTGAATGAACCACTGTTGTTGGATGCAGACATTAGATTAGGACTTAA
TTGTACTATTATTCATT
Found at i:105160187 original size:135 final size:135
Alignment explanation
Indices: 105159944--105160215 Score: 517
Period size: 135 Copynumber: 2.0 Consensus size: 135
105159934 AGATCAAATC
*
105159944 AAAGTTAATTCCAGTATTTGTGGATATGCATATTAACTGCCTGTAGTTTAATGATAATCCACTAA
1 AAAGTTAATTCCAGTATTCGTGGATATGCATATTAACTGCCTGTAGTTTAATGATAATCCACTAA
105160009 AATTCATGCTACACATAACATGAAACCTGTAATTCAATCATTTGGATCCAACAGCATACAAAGGA
66 AATTCATGCTACACATAACATGAAACCTGTAATTCAATCATTTGGATCCAACAGCATACAAAGGA
105160074 AATTG
131 AATTG
105160079 AAAGTTAATTCCAGTATTCGTGGATATGCATATTAACTGCCTGTAGTTTAATGATAATCCACTAA
1 AAAGTTAATTCCAGTATTCGTGGATATGCATATTAACTGCCTGTAGTTTAATGATAATCCACTAA
* *
105160144 AATTCATGCTACACATAACATGAAACCTGTAATTCAATTATTTGGATCCAGCAGCATACAAAGGA
66 AATTCATGCTACACATAACATGAAACCTGTAATTCAATCATTTGGATCCAACAGCATACAAAGGA
105160209 AATTG
131 AATTG
105160214 AA
1 AA
105160216 GGGCCAAAAT
Statistics
Matches: 134, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
135 134 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (135 bp):
AAAGTTAATTCCAGTATTCGTGGATATGCATATTAACTGCCTGTAGTTTAATGATAATCCACTAA
AATTCATGCTACACATAACATGAAACCTGTAATTCAATCATTTGGATCCAACAGCATACAAAGGA
AATTG
Found at i:105160525 original size:167 final size:169
Alignment explanation
Indices: 105160195--105160526 Score: 589
Period size: 167 Copynumber: 2.0 Consensus size: 169
105160185 TTGGATCCAG
***
105160195 CAGCATACAAAGGAAATTGAAGGGCCAAAATGAAAAAGAATTTTTTTATATCATTGTGTAATCTT
1 CAGCATACAAAGGAAATTGAAGGGCCAAAATGAAAAAGAATAAATTTATATCATTGTGTAATCTT
105160260 GTTTCTAGAACAGAATCAATCACAAGTACTATAGGGCTAAAATGTAATGAACCACCCATACTTTA
66 GTTTCTAGAACAGAATCAATCACAAGTACTATAGGGCTAAAATGTAATGAACCACCCATACTTTA
105160325 GTGACTTGAGCAAAGGGCATTCATACCAGTAATTCATAC
131 GTGACTTGAGCAAAGGGCATTCATACCAGTAATTCATAC
105160364 CAGCATACAAAGGAAATTGAAGGGCCAAAATGATAAAA-AA-AAATTTATATCATTGTGTAATCT
1 CAGCATACAAAGGAAATTGAAGGGCCAAAATGA-AAAAGAATAAATTTATATCATTGTGTAATCT
* *
105160427 TGTTTCTAGAACAGAATCAATCACGAGTACTATATGGCT-AAATGTAATGAACCACCCATACTTT
65 TGTTTCTAGAACAGAATCAATCACAAGTACTATAGGGCTAAAATGTAATGAACCACCCATACTTT
105160491 AGTGACTTGAGCAAAGGGCATTCATACCAGTAATTC
130 AGTGACTTGAGCAAAGGGCATTCATACCAGTAATTC
105160527 GTGCTACACA
Statistics
Matches: 157, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
167 61 0.39
168 57 0.36
169 35 0.22
170 4 0.03
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (169 bp):
CAGCATACAAAGGAAATTGAAGGGCCAAAATGAAAAAGAATAAATTTATATCATTGTGTAATCTT
GTTTCTAGAACAGAATCAATCACAAGTACTATAGGGCTAAAATGTAATGAACCACCCATACTTTA
GTGACTTGAGCAAAGGGCATTCATACCAGTAATTCATAC
Found at i:105165982 original size:24 final size:26
Alignment explanation
Indices: 105165936--105165983 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
105165926 TGGTTTTCAC
*
105165936 TTTTTTTTACCACATTAGCTTTAATT
1 TTTTTTTTACCACAGTAGCTTTAATT
*
105165962 TTTTTTTTA-CA-AGTAGTTTTAA
1 TTTTTTTTACCACAGTAGCTTTAA
105165984 AAAATTATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 2 0.10
26 9 0.45
ACGTcount: A:0.25, C:0.10, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTTTTTACCACAGTAGCTTTAATT
Found at i:105168234 original size:22 final size:22
Alignment explanation
Indices: 105168206--105168256 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
105168196 AATGTTATAA
*
105168206 ATTAAATCACAC-AAACTCGTTC
1 ATTAAATCAC-CTAAACTCATTC
* *
105168228 ATTAAATTACCTCAACTCATTC
1 ATTAAATCACCTAAACTCATTC
105168250 ATTAAAT
1 ATTAAAT
105168257 TACTTATGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.41, C:0.24, G:0.02, T:0.33
Consensus pattern (22 bp):
ATTAAATCACCTAAACTCATTC
Found at i:105175618 original size:16 final size:16
Alignment explanation
Indices: 105175597--105175629 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
105175587 ATAATATTAC
105175597 ATTTTCACTATTTTAA
1 ATTTTCACTATTTTAA
105175613 ATTTTCACTATTTTAA
1 ATTTTCACTATTTTAA
105175629 A
1 A
105175630 AAAAATACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTCACTATTTTAA
Found at i:105187743 original size:21 final size:21
Alignment explanation
Indices: 105187717--105187756 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
105187707 CCAAGCTCCT
* *
105187717 ATCTTCTTCCTCTTCATCGTC
1 ATCTTCTTCATCGTCATCGTC
105187738 ATCTTCTTCATCGTCATCG
1 ATCTTCTTCATCGTCATCG
105187757 AACTCCGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.07, T:0.45
Consensus pattern (21 bp):
ATCTTCTTCATCGTCATCGTC
Found at i:105187747 original size:15 final size:15
Alignment explanation
Indices: 105187727--105187755 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
105187717 ATCTTCTTCC
105187727 TCTTCATCGTCATCT
1 TCTTCATCGTCATCT
105187742 TCTTCATCGTCATC
1 TCTTCATCGTCATC
105187756 GAACTCCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.07, T:0.45
Consensus pattern (15 bp):
TCTTCATCGTCATCT
Found at i:105191624 original size:5 final size:6
Alignment explanation
Indices: 105191608--105191632 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
105191598 TAAATTTATA
105191608 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
105191633 AAAATTTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:105198415 original size:22 final size:22
Alignment explanation
Indices: 105198375--105198416 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
105198365 TTTAAAATTT
* * *
105198375 TAAAAATTCTTTAATAAAATCA
1 TAAAAATTATATAAAAAAATCA
105198397 TAAAAATTATATAAAAAAAT
1 TAAAAATTATATAAAAAAAT
105198417 ATTTTGAAGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAAATTATATAAAAAAATCA
Found at i:105200548 original size:18 final size:19
Alignment explanation
Indices: 105200506--105200562 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 19
105200496 ATTACAAAAA
*
105200506 AAAATATCAAAATAATTTTT
1 AAAATATCAAAAT-ATTTAT
*
105200526 GAAAT-TCAAAATATTTAT
1 AAAATATCAAAATATTTAT
*
105200544 AAAATATCTAAA-ATTTAT
1 AAAATATCAAAATATTTAT
105200562 A
1 A
105200563 TTTTTTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 16 0.50
19 12 0.38
20 4 0.12
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (19 bp):
AAAATATCAAAATATTTAT
Found at i:105200746 original size:16 final size:16
Alignment explanation
Indices: 105200727--105200757 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
105200717 TGAATTTTTT
105200727 TTTCAAATATATATGA
1 TTTCAAATATATATGA
*
105200743 TTTCAAATTTATATG
1 TTTCAAATATATATG
105200758 CTTCATCATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGA
Found at i:105205272 original size:31 final size:31
Alignment explanation
Indices: 105205215--105205277 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
105205205 AACAATTATA
*
105205215 TTAAATATATACATTGAATTAAAATCAAAGT
1 TTAAATATATACATTGAATCAAAATCAAAGT
*
105205246 TTAATATATATAC-TTGAATCATAATCAAAGT
1 TTAA-ATATATACATTGAATCAAAATCAAAGT
105205277 T
1 T
105205278 CATGTATTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 21 0.72
32 8 0.28
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (31 bp):
TTAAATATATACATTGAATCAAAATCAAAGT
Found at i:105206822 original size:18 final size:20
Alignment explanation
Indices: 105206786--105206823 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
105206776 TTCATGTATA
105206786 AATTATTTATGATTATTTAT
1 AATTATTTATGATTATTTAT
*
105206806 AATT-TTTA-GATTTTTTAT
1 AATTATTTATGATTATTTAT
105206824 TTTTTTATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (20 bp):
AATTATTTATGATTATTTAT
Found at i:105210503 original size:7 final size:7
Alignment explanation
Indices: 105210491--105210520 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
105210481 GTCAAAGTCT
105210491 AAGATTC
1 AAGATTC
105210498 AAGATTC
1 AAGATTC
105210505 AAGATTC
1 AAGATTC
105210512 AAGATTC
1 AAGATTC
105210519 AA
1 AA
105210521 AGTCTTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (7 bp):
AAGATTC
Found at i:105212268 original size:29 final size:28
Alignment explanation
Indices: 105212236--105212308 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 28
105212226 TTTTATTATT
*
105212236 TTAATATTCTA-TATTTTTATAGGATTAAA
1 TTAAT-TTCTATTATTTTTAGAGG-TTAAA
*
105212265 TTAATTTTTATTATTTTTAGAGGTTAAAA
1 TTAATTTCTATTATTTTTAGAGGTT-AAA
105212294 TATAATTT-TATTATT
1 T-TAATTTCTATTATT
105212309 ATTAATTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
28 6 0.15
29 27 0.69
30 6 0.15
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.56
Consensus pattern (28 bp):
TTAATTTCTATTATTTTTAGAGGTTAAA
Found at i:105212292 original size:28 final size:30
Alignment explanation
Indices: 105212247--105212308 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
105212237 TAATATTCTA
*
105212247 TATTTTTATAGGATT-AAAT-TAATTTTTAT
1 TATTTTTAGAGGATTAAAATATAA-TTTTAT
105212276 TATTTTTAGAGG-TTAAAATATAATTTTAT
1 TATTTTTAGAGGATTAAAATATAATTTTAT
105212305 TATT
1 TATT
105212309 ATTAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 2 0.07
29 25 0.83
30 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.56
Consensus pattern (30 bp):
TATTTTTAGAGGATTAAAATATAATTTTAT
Found at i:105212563 original size:22 final size:22
Alignment explanation
Indices: 105212538--105212584 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
105212528 AATTTAAATT
105212538 TTTA-TATTTTTATTTATAGAAA
1 TTTAGTATTTTTATTTATA-AAA
* *
105212560 TTTAGTTTTTTTATTTTTAAAA
1 TTTAGTATTTTTATTTATAAAA
105212582 TTT
1 TTT
105212585 CAAAAATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (22 bp):
TTTAGTATTTTTATTTATAAAA
Found at i:105213974 original size:8 final size:8
Alignment explanation
Indices: 105213961--105214025 Score: 57
Period size: 8 Copynumber: 8.6 Consensus size: 8
105213951 TCAATAAATA
105213961 AAAATATT
1 AAAATATT
105213969 AAAATA-T
1 AAAATATT
105213976 AAAATATT
1 AAAATATT
*
105213984 AAAATAAT
1 AAAATATT
*
105213992 ATAATA-T
1 AAAATATT
105213999 -AAAT-TT
1 AAAATATT
* *
105214005 AAAAAAAT
1 AAAATATT
*
105214013 AAAAAATT
1 AAAATATT
105214021 AAAAT
1 AAAAT
105214026 GGGAGGGTCT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
6 4 0.09
7 11 0.24
8 31 0.67
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
AAAATATT
Found at i:105213997 original size:23 final size:21
Alignment explanation
Indices: 105213961--105214016 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 21
105213951 TCAATAAATA
*
105213961 AAAATATTAAAATATAAAATATT
1 AAAATAATAAAATAT-AAAT-TT
*
105213984 AAAATAATATAATATAAATTT
1 AAAATAATAAAATATAAATTT
*
105214005 AAAAAAATAAAA
1 AAAATAATAAAA
105214017 AATTAAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 12 0.41
22 4 0.14
23 13 0.45
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (21 bp):
AAAATAATAAAATATAAATTT
Found at i:105214001 original size:15 final size:15
Alignment explanation
Indices: 105213956--105213989 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
105213946 AACTTTCAAT
105213956 AAATA-AAAATATTA
1 AAATATAAAATATTA
105213970 AAATATAAAATATTA
1 AAATATAAAATATTA
105213985 AAATA
1 AAATA
105213990 ATATAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATATAAAATATTA
Found at i:105214024 original size:37 final size:36
Alignment explanation
Indices: 105213953--105214025 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
105213943 AAAAACTTTC
* *
105213953 AATAAATAAAAATATTAAAATATAAAATATTAAAAT
1 AATAAATAAAAATATTAAAAAATAAAAAATTAAAAT
*
105213989 AATATAATATAAAT-TTAAAAAAATAAAAAATTAAAAT
1 AATA-AATAAAAATATT-AAAAAATAAAAAATTAAAAT
105214026 GGGAGGGTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 6 0.19
37 26 0.81
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (36 bp):
AATAAATAAAAATATTAAAAAATAAAAAATTAAAAT
Found at i:105219893 original size:52 final size:52
Alignment explanation
Indices: 105219822--105220173 Score: 467
Period size: 52 Copynumber: 7.0 Consensus size: 52
105219812 ATCAAGTGAC
* **
105219822 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
105219874 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
105219926 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* **
105219972 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
105220024 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
105220070 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
** *
105220122 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAGAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACA-AGTG
105220174 ATAAGTGGCT
Statistics
Matches: 267, Mismatches: 20, Indels: 25
0.86 0.06 0.08
Matches are distributed among these distances:
46 85 0.32
52 178 0.67
53 4 0.01
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:105219944 original size:98 final size:98
Alignment explanation
Indices: 105219874--105220180 Score: 429
Period size: 98 Copynumber: 3.1 Consensus size: 98
105219864 TGACAAGTGG
* *
105219874 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
105219939 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* **
105219972 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
105220037 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* *
105220070 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
105220135 ATAGCTTTA-G-CTACACTTATCTGATCAAGAGAC
66 ATAGC--TACGACTATACTGATCTGATCAAGTGAC
*
105220168 AGAGTGATAAGTG
1 AAAGTGATAAGTG
105220181 GCTACACTTA
Statistics
Matches: 193, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
98 191 0.99
99 1 0.01
100 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (98 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
ATAGCTACGACTATACTGATCTGATCAAGTGAC
Found at i:105220028 original size:150 final size:144
Alignment explanation
Indices: 105219808--105220173 Score: 579
Period size: 150 Copynumber: 2.5 Consensus size: 144
105219798 TTTGAGTACT
105219808 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
105219873 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------AAAGTGATAAGT
*
105219938 AATAGCTTCGGCTATACTTA
125 AATAGCTTCGGCTACACTTA
105219958 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
105220023 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
105220088 TTCGGCTACACTTA
131 TTCGGCTACACTTA
* *
105220102 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
105220167 CAGAGTG
60 CA-AGTG
105220174 ATAAGTGGCT
Statistics
Matches: 205, Mismatches: 4, Indels: 13
0.92 0.02 0.06
Matches are distributed among these distances:
144 44 0.21
150 157 0.77
151 4 0.02
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
TTCGGCTACACTTA
Found at i:105220187 original size:37 final size:37
Alignment explanation
Indices: 105220144--105220363 Score: 372
Period size: 37 Copynumber: 6.0 Consensus size: 37
105220134 GATAGCTTTA
* *
105220144 GCTACACTTATCTGATCAAGAGACAGAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
105220181 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
105220218 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
105220255 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
105220292 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
105220329 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
105220364 ATCATACGTA
Statistics
Matches: 175, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 160 0.91
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:105222855 original size:23 final size:24
Alignment explanation
Indices: 105222811--105222857 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
105222801 TTAAATATGT
*
105222811 ATAAATCTAAAAAAATTCTTAAAA
1 ATAAAACTAAAAAAATTCTTAAAA
*
105222835 ATAAAACTAAAAAAGTT-TTAAAA
1 ATAAAACTAAAAAAATTCTTAAAA
105222858 CTATCCTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (24 bp):
ATAAAACTAAAAAAATTCTTAAAA
Found at i:105223006 original size:5 final size:5
Alignment explanation
Indices: 105222996--105223020 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
105222986 ACTTTAAATA
105222996 TTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC
105223021 AAAGTCTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:105232356 original size:16 final size:17
Alignment explanation
Indices: 105232335--105232369 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
105232325 TAATGTCTAG
105232335 GAAAATTA-TTAATTGA
1 GAAAATTAGTTAATTGA
105232351 GAAAATTAGTTTAATTGA
1 GAAAATTAG-TTAATTGA
105232369 G
1 G
105232370 GGGTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (17 bp):
GAAAATTAGTTAATTGA
Found at i:105236818 original size:18 final size:17
Alignment explanation
Indices: 105236786--105236819 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
105236776 TCTATATCAA
*
105236786 TTAAAAATTATATTTTG
1 TTAAAAATTAAATTTTG
105236803 TTAAATAATTAAATTTT
1 TTAAA-AATTAAATTTT
105236820 ATAAGCTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTAAAAATTAAATTTTG
Found at i:105237533 original size:6 final size:6
Alignment explanation
Indices: 105237522--105237546 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
105237512 TATTTTTATA
105237522 TAATTT TAATTT TAATTT TAATTT T
1 TAATTT TAATTT TAATTT TAATTT T
105237547 GCACATTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TAATTT
Found at i:105238481 original size:24 final size:24
Alignment explanation
Indices: 105238454--105238500 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
105238444 CATATGAAAA
*
105238454 TTAAATTAACCAAATCA-AATTATT
1 TTAAATCAACCAAA-CATAATTATT
*
105238478 TTAACTCAACCAAACATAATTAT
1 TTAAATCAACCAAACATAATTAT
105238501 AATACATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (24 bp):
TTAAATCAACCAAACATAATTATT
Found at i:105246903 original size:17 final size:17
Alignment explanation
Indices: 105246881--105246915 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
105246871 CTAATTTTAA
105246881 AATAGAGTTATT-ATTTG
1 AATAGAGTT-TTAATTTG
105246898 AATAGAGTTTTAATTTG
1 AATAGAGTTTTAATTTG
105246915 A
1 A
105246916 GTTAATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (17 bp):
AATAGAGTTTTAATTTG
Found at i:105247036 original size:22 final size:22
Alignment explanation
Indices: 105247006--105247047 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
105246996 GATATGTTAG
105247006 AAATGC-TTTACTTATAATTTGA
1 AAATGCTTTTA-TTATAATTTGA
*
105247028 AAATTCTTTTATTATAATTT
1 AAATGCTTTTATTATAATTT
105247048 TTGAATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (22 bp):
AAATGCTTTTATTATAATTTGA
Found at i:105247287 original size:24 final size:24
Alignment explanation
Indices: 105247255--105247302 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
105247245 TTTATAAGTC
105247255 CCTTTGTAGCACAGTAATAGTGCG
1 CCTTTGTAGCACAGTAATAGTGCG
105247279 CCTTTGTAGCACAGTAATAGTGCG
1 CCTTTGTAGCACAGTAATAGTGCG
105247303 TCCGCTTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (24 bp):
CCTTTGTAGCACAGTAATAGTGCG
Found at i:105254040 original size:38 final size:38
Alignment explanation
Indices: 105253985--105254178 Score: 307
Period size: 38 Copynumber: 5.1 Consensus size: 38
105253975 TATTTGATGC
** *
105253985 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
*
105254023 ATATCCGGGTTTTATCCCGCAGGCTTTGTGCTGGTATT
1 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
* * *
105254061 ATATCCGGATTTTATCCTGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
105254099 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
1 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
**
105254137 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATT
1 ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
105254175 ATAT
1 ATAT
105254179 TCGAGCTTAA
Statistics
Matches: 145, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 145 1.00
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (38 bp):
ATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATT
Done.