Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 325 of 333
Found at i:105521431 original size:16 final size:16
Alignment explanation
Indices: 105521410--105521440 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
105521400 TTTGAAAGAA
105521410 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
105521426 TTTCAAATTTATATG
1 TTTCAAATATATATG
105521441 CTCTAATATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:105532813 original size:46 final size:48
Alignment explanation
Indices: 105532709--105532828 Score: 145
Period size: 48 Copynumber: 2.5 Consensus size: 48
105532699 TGTCTTCGAC
** * *
105532709 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * * *
105532757 ATGGGCTTACATGGCTCATTCTTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
105532803 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
105532829 CTGTCCTGTC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 26 0.43
47 1 0.02
48 34 0.56
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:105536195 original size:19 final size:15
Alignment explanation
Indices: 105536157--105536187 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
105536147 ATAATATTTC
105536157 TATTAATTTATTTAA
1 TATTAATTTATTTAA
105536172 TATTAATTTATTTAA
1 TATTAATTTATTTAA
105536187 T
1 T
105536188 TTGAATTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTAATTTATTTAA
Found at i:105537814 original size:8 final size:8
Alignment explanation
Indices: 105537801--105537836 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
105537791 GATTTATGAA
105537801 CATTTTCC
1 CATTTTCC
105537809 CATTTTCC
1 CATTTTCC
105537817 CATTTTCC
1 CATTTTCC
*
105537825 CATTTTCT
1 CATTTTCC
105537833 CATT
1 CATT
105537837 CATGTGGTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.14, C:0.33, G:0.00, T:0.53
Consensus pattern (8 bp):
CATTTTCC
Found at i:105546280 original size:6 final size:6
Alignment explanation
Indices: 105546269--105546295 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
105546259 AGAAATTGAT
105546269 GCTCAA GCTCAA GCTCAA GCTCAA GCT
1 GCTCAA GCTCAA GCTCAA GCTCAA GCT
105546296 TGTCACTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.33, G:0.19, T:0.19
Consensus pattern (6 bp):
GCTCAA
Found at i:105550606 original size:30 final size:28
Alignment explanation
Indices: 105550538--105550606 Score: 68
Period size: 32 Copynumber: 2.3 Consensus size: 28
105550528 AGAATTTCTA
* *
105550538 TAAATTTTGAGGGTTAAGTTAAAATTTT
1 TAAATTTTGAGGGTTAAGTAAAAAATTT
105550566 TAAAAGTTTTGAAAGGGTTAA-TGAAAAAATTT
1 T-AAA-TTTTG--AGGGTTAAGT-AAAAAATTT
105550598 TAAATTTTG
1 TAAATTTTG
105550607 TTTCTTGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
28 1 0.03
29 3 0.09
30 10 0.29
31 4 0.12
32 16 0.47
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.42
Consensus pattern (28 bp):
TAAATTTTGAGGGTTAAGTAAAAAATTT
Found at i:105551450 original size:30 final size:30
Alignment explanation
Indices: 105551416--105551503 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
105551406 CTTAAAAAAA
*
105551416 TTTGAAAGCTCTAACTAAAATTTTTAAACT
1 TTTGAAAGCTCTAATTAAAATTTTTAAACT
* * *
105551446 TTTGAAAG-TTTAATTAGAAATTTTAAAAGT
1 TTTGAAAGCTCTAATTA-AAATTTTTAAACT
* *
105551476 TTTGAAGGAC-CTAATTAAAATATTTAAA
1 TTTGAAAG-CTCTAATTAAAATTTTTAAA
105551504 AAATTTGGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
29 6 0.13
30 35 0.74
31 6 0.13
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (30 bp):
TTTGAAAGCTCTAATTAAAATTTTTAAACT
Found at i:105555522 original size:40 final size:40
Alignment explanation
Indices: 105555419--105555553 Score: 245
Period size: 40 Copynumber: 3.4 Consensus size: 40
105555409 GACTTATAGT
*
105555419 CCGCAGGCTTTGTGCTGGCAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
*
105555459 CCTCAGGC-TTGTGCTGGTAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
105555498 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
105555538 CCGCAGGCTTTGTGCT
1 CCGCAGGCTTTGTGCT
105555554 AGAAATTGGA
Statistics
Matches: 91, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
39 37 0.41
40 54 0.59
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
Found at i:105569962 original size:203 final size:211
Alignment explanation
Indices: 105569589--105570158 Score: 753
Period size: 203 Copynumber: 2.7 Consensus size: 211
105569579 TATCAAATGT
* * * *
105569589 GACAGTAAGACTTCAGAACCATACGTTCTGTGGGTTTTAAGGAATAAACAATTTAAGCCAGCATC
1 GACAATAAGACTTCAGAACCATACGTTCTGTGGTTTTTAACGAATAAACAATTTAAGCCAACATC
* * * * *
105569654 TTAATTTCATTTAGAGAACACATGAAATGCCAATAACCAACAAGATCATCACCTTGCAAGGACAA
66 TTAATTCCATTTAGAGAACACATGAAATGCCAATAAACAACAAGATCATCACATTGC-A-TACGA
*
105569719 TCAATAAGCACACTTAACAATATGCAGCCACTCCATGGACCATACTAATCAAACG-CCTTTAACA
129 TCAATAAGCACACTTAACAATACGCAGCCACTCCATGGACCATACTAATCAAA-GTCCTTTAACA
105569783 CCATA-AC-AAGACC-A-A
193 CCATAGACTAAGACCAATA
* * * * * * * **
105569798 -ACAATAAGACTTCAAAACTATATGTACTGTAGTTTTTAATGAATAAACTACGTAAGCCAACATC
1 GACAATAAGACTTCAGAACCATACGTTCTGTGGTTTTTAACGAATAAACAATTTAAGCCAACATC
* * * * *
105569862 -TAAATCCATTTAGAGAACATATAAAATGCCAATAATCAACAGGATCATCACATTGCATA-GA-C
66 TTAATTCCATTTAGAGAACACATGAAATGCCAATAAACAACAAGATCATCACATTGCATACGATC
*
105569924 AATAAGCACACTTAATAATACGCAGCCACTCCATGGACCATACTAATCAAAGTCCTTTAACACCA
131 AATAAGCACACTTAACAATACGCAGCCACTCCATGGACCATACTAATCAAAGTCCTTTAACACCA
* *
105569989 TAGCCTATGACCAAATA
196 TAGACTAAGACC-AATA
*
105570006 TGACAATAAGACTTCAGAACCATACATTCTGTGGTTTTTAACGAATAAACAATTTAAGCCAACAT
1 -GACAATAAGACTTCAGAACCATACGTTCTGTGGTTTTTAACGAATAAACAATTTAAGCCAACAT
*
105570071 CTTAATTCCATTTAGAGAACACATGAAATGCCAATAAACAACAAGATCATCACATTGCAATGACT
65 CTTAATTCCATTTAGAGAACACATGAAATGCCAATAAACAACAAGATCATCACATTGC-AT-ACG
105570136 ATCAATAAGCACACTTAACAATA
128 ATCAATAAGCACACTTAACAATA
105570159 AAGAAAATAC
Statistics
Matches: 306, Mismatches: 42, Indels: 20
0.83 0.11 0.05
Matches are distributed among these distances:
202 1 0.00
203 64 0.21
204 2 0.01
205 6 0.02
206 1 0.00
207 50 0.16
208 53 0.17
210 54 0.18
211 51 0.17
212 2 0.01
213 1 0.00
214 1 0.00
215 20 0.07
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.24
Consensus pattern (211 bp):
GACAATAAGACTTCAGAACCATACGTTCTGTGGTTTTTAACGAATAAACAATTTAAGCCAACATC
TTAATTCCATTTAGAGAACACATGAAATGCCAATAAACAACAAGATCATCACATTGCATACGATC
AATAAGCACACTTAACAATACGCAGCCACTCCATGGACCATACTAATCAAAGTCCTTTAACACCA
TAGACTAAGACCAATA
Found at i:105571702 original size:12 final size:12
Alignment explanation
Indices: 105571685--105571715 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
105571675 ACTAATCCAC
105571685 CGAATTGATTGT
1 CGAATTGATTGT
105571697 CGAATTGATTGT
1 CGAATTGATTGT
105571709 CGAATTG
1 CGAATTG
105571716 TCAATTGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (12 bp):
CGAATTGATTGT
Found at i:105571804 original size:31 final size:31
Alignment explanation
Indices: 105571769--105571833 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
105571759 AATAGCCCAA
*
105571769 TGACTTAAATAAAAACTTTTGTATAGTTTAG
1 TGACTTAAATAAAAACTTTTGAATAGTTTAG
*
105571800 TGACTTAAATAAAAACTTTTGAATGGTTTAG
1 TGACTTAAATAAAAACTTTTGAATAGTTTAG
105571831 TGA
1 TGA
105571834 TCAAATTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTTGAATAGTTTAG
Found at i:105576826 original size:42 final size:38
Alignment explanation
Indices: 105576780--105576868 Score: 117
Period size: 37 Copynumber: 2.3 Consensus size: 38
105576770 TAAAAATTAT
105576780 TTATATTAAAAAAACACTATCATAAATATAATAAATATTTTA
1 TTATATTAAAAAAACAC-AT-A-AAA-ATAATAAATATTTTA
*
105576822 TTATATT-AAAAAACACATAAAAATATTAAATATTTTA
1 TTATATTAAAAAAACACATAAAAATAATAAATATTTTA
*
105576859 TTGTATTAAA
1 TTATATTAAA
105576869 TATAATTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
37 20 0.45
38 5 0.11
39 1 0.02
40 2 0.05
41 9 0.20
42 7 0.16
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (38 bp):
TTATATTAAAAAAACACATAAAAATAATAAATATTTTA
Found at i:105580287 original size:32 final size:32
Alignment explanation
Indices: 105580251--105580315 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
105580241 ATTTTCTGTC
105580251 ATGTTGCCATGGTATCTTTCAACCATGGTCTT
1 ATGTTGCCATGGTATCTTTCAACCATGGTCTT
*
105580283 ATGTTGCCATGGTTTCTTTCAACCATGGTCTT
1 ATGTTGCCATGGTATCTTTCAACCATGGTCTT
105580315 A
1 A
105580316 CACATTTCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (32 bp):
ATGTTGCCATGGTATCTTTCAACCATGGTCTT
Found at i:105580308 original size:16 final size:16
Alignment explanation
Indices: 105580257--105580311 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
105580247 TGTCATGTTG
*
105580257 CCATGGTATCTTTCAA
1 CCATGGTTTCTTTCAA
* *
105580273 CCATGGTCTTATGTT--G
1 CCATGGT-TTCT-TTCAA
105580289 CCATGGTTTCTTTCAA
1 CCATGGTTTCTTTCAA
105580305 CCATGGT
1 CCATGGT
105580312 CTTACACATT
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 2 0.07
15 3 0.10
16 21 0.70
17 2 0.07
18 2 0.07
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (16 bp):
CCATGGTTTCTTTCAA
Found at i:105580314 original size:96 final size:96
Alignment explanation
Indices: 105579821--105580284 Score: 883
Period size: 96 Copynumber: 4.8 Consensus size: 96
105579811 TTTGACATGA
105579821 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
105579886 CAACCATGGTCTTATTCTTTTCATGTCACGT
66 CAACCATGGTCTTATTCTTTTCATGTCACGT
105579917 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
*
105579982 CAATCATGGTCTTATTCTTTTCATGTCACGT
66 CAACCATGGTCTTATTCTTTTCATGTCACGT
* * *
105580013 TGCCATGGTGTCTTTCAACTATGGTCTTTCTCATTCATTTTCTGTCATGTTGCCATGATATCTTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
105580078 CAACCATGGTCTTATTCTTTTCATGTCACGT
66 CAACCATGGTCTTATTCTTTTCATGTCACGT
105580109 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
*
105580174 CAACCATGGTCTTATTCTTTTTATGTCACGT
66 CAACCATGGTCTTATTCTTTTCATGTCACGT
105580205 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
105580270 CAACCATGGTCTTAT
66 CAACCATGGTCTTAT
105580285 GTTGCCATGG
Statistics
Matches: 359, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 359 1.00
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.45
Consensus pattern (96 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
CAACCATGGTCTTATTCTTTTCATGTCACGT
Found at i:105580337 original size:46 final size:46
Alignment explanation
Indices: 105580285--105580376 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
105580275 ATGGTCTTAT
*
105580285 GTTGCCATGGTTTCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
105580331 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
105580377 AGAGCACACT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:105580352 original size:78 final size:80
Alignment explanation
Indices: 105580203--105580361 Score: 225
Period size: 78 Copynumber: 2.0 Consensus size: 80
105580193 TTTATGTCAC
* * *
105580203 GTTGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCT
1 GTTGCCATAGTGTCTTTCAACCATGGTCTTAC-CA-TCATTTTCTATCAGGTTGCCATGGTATCT
105580268 TTCAACCATGGTCTTAT
64 TTCAACCATGGTCTTAT
* *
105580285 GTTGCCATGGTTTCTTTCAACCATGGTCTTA-CA-CA-TTTCATATCAGGTTGCCATGGTATCTT
1 GTTGCCATAGTGTCTTTCAACCATGGTCTTACCATCATTTTC-TATCAGGTTGCCATGGTATCTT
105580347 TCAACCATGGTCTTA
65 TCAACCATGGTCTTA
105580362 CACATTTCAT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
77 4 0.06
78 37 0.52
80 2 0.03
82 28 0.39
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (80 bp):
GTTGCCATAGTGTCTTTCAACCATGGTCTTACCATCATTTTCTATCAGGTTGCCATGGTATCTTT
CAACCATGGTCTTAT
Found at i:105582447 original size:21 final size:22
Alignment explanation
Indices: 105582423--105582472 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
105582413 AAATCCGAAT
105582423 TTTTCCCTTT-TTCCTTCTTTC
1 TTTTCCCTTTCTTCCTTCTTTC
*
105582444 TTTT--TTTTCCTTCCTTCTTTC
1 TTTTCCCTTT-CTTCCTTCTTTC
*
105582465 TTTCCCCT
1 TTTTCCCT
105582473 GCTCTCTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 6
0.71 0.10 0.19
Matches are distributed among these distances:
19 3 0.14
21 18 0.82
23 1 0.05
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTTCCCTTTCTTCCTTCTTTC
Found at i:105582452 original size:17 final size:17
Alignment explanation
Indices: 105582430--105582463 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
105582420 AATTTTTCCC
*
105582430 TTTTTCCTTCTTTCTTT
1 TTTTTCCTTCCTTCTTT
105582447 TTTTTCCTTCCTTCTTT
1 TTTTTCCTTCCTTCTTT
105582464 CTTTCCCCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCCTTCCTTCTTT
Found at i:105582516 original size:15 final size:16
Alignment explanation
Indices: 105582495--105582532 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
105582485 CGTTTCATCC
105582495 TTTCTTTCTTTTTCTA
1 TTTCTTTCTTTTTCTA
*
105582511 -TTCTTTTTTTTTCTA
1 TTTCTTTCTTTTTCTA
105582526 TTTCTTT
1 TTTCTTT
105582533 TACTTTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTCTTTCTTTTTCTA
Found at i:105593550 original size:42 final size:42
Alignment explanation
Indices: 105593492--105593586 Score: 151
Period size: 42 Copynumber: 2.3 Consensus size: 42
105593482 TTCATAGTAG
105593492 TTAAT-AAATTTAATAGCTCTTATTTGAGTCAAGATTAAAAT
1 TTAATAAAATTTAATAGCTCTTATTTGAGTCAAGATTAAAAT
* *
105593533 TTAATAAAATTTAATAGCTCTTGTTTGAGTCAAGATTGAAAT
1 TTAATAAAATTTAATAGCTCTTATTTGAGTCAAGATTAAAAT
105593575 TT-A-AAAATTTAA
1 TTAATAAAATTTAA
105593587 AAAATATAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
40 9 0.18
41 6 0.12
42 36 0.71
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.41
Consensus pattern (42 bp):
TTAATAAAATTTAATAGCTCTTATTTGAGTCAAGATTAAAAT
Found at i:105595077 original size:28 final size:28
Alignment explanation
Indices: 105595044--105595102 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
105595034 ATTTAGATTT
* *
105595044 TAAAATTAAAAA-A-AATGATTAAATTAC
1 TAAAAATAAAAATATAACGATTAAATT-C
105595071 TAAAAATAAAAATATAACGATTAAATTC
1 TAAAAATAAAAATATAACGATTAAATTC
105595099 TAAA
1 TAAA
105595103 TTAGGTAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 11 0.39
28 6 0.21
29 11 0.39
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (28 bp):
TAAAAATAAAAATATAACGATTAAATTC
Found at i:105602483 original size:215 final size:217
Alignment explanation
Indices: 105601886--105602932 Score: 1543
Period size: 215 Copynumber: 4.9 Consensus size: 217
105601876 ATGTGAGCCT
* *
105601886 TGAGATAAAACCCGAAGTAGAATTAAGACACATCAATATATATATCCATTTGTATATCTCAATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATCCATTTGTATATCTC---A-
* ** *
105601951 ATATATATATAACATACGCATGTCTAGTTAGAATATTTAGACAAGTTGTCGGCCACCTTATCTGT
62 ATATATATAT-ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGT
* * *
105602016 AAAATGTGATCATTTTGGCAAATATTCCATATTTAAGAACTTTCCTGGAAAATTTTCTGAAACTA
126 AAAATGTGATCATTTTAGCAAATATTCCAT-CTTAAGAACTTTCCTGGAAATTTTTCTGAAACTA
*
105602081 TGACCCATCAAGGCTCTTGGCAGAATCG
190 TGACCCATCAAGGCTCTTAGCAGAATCG
* *
105602109 TAAGATAAAACCTGAAGCAGAATTGAGACACATCAATATATATATATCCATTTGTATATCTCAAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATC-A-ATATATATATCCATTTGTATATCTCAAT
* * * * *
105602174 AGATATACACATACGCATGTGTGGTTAGAATATTTGGACAAGTTGTCCTCTACCTTATCTGTAAA
64 ATATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAA
105602239 ATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATGAC
129 ATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATGAC
*
105602304 CCATCAAGGCTCTTAGCAGAATGG
194 CCATCAAGGCTCTTAGCAGAATCG
* *
105602328 TGAGATAAAACCCGAAGCAGAATTGAGACACTTC-A-ATATATATCCAATTGTATATCTCAATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATCCATTTGTATATCTCAATAT
* *
105602391 ATATATACATACGCATGTCTAGTTAGACTATTTGGACAAGTTGTCATCTATCTTATCTGTAAAAT
66 ATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAAAT
* *
105602456 GTGATTATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACCC
131 GTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATGACCC
* *
105602521 ATCAAGACTCTTAGCAGAGTCG
196 ATCAAGGCTCTTAGCAGAATCG
* *
105602543 TGAGATAGAACCCGAAGCAGAACTGAGACACATCAATATATATATCCATTTG----------T-T
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATCCATTTGTATATCTCAATAT
*
105602597 ATATATACATACGCATGTCTAGTTAGAATATTTGGTCAAGTTGTCATCTACCTTATCTGTAAAAT
66 ATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAAAT
* *
105602662 GTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTACTGGAAATTTTTCTGAAACTATGACTC
131 GTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATGACCC
* *
105602727 ATCAAGGCTCTTAGCTGAGTCG
196 ATCAAGGCTCTTAGCAGAATCG
* * * *
105602749 TGAGGTAAAACCCAAAGCAGAATTGAGCCACACCAATATATATATCCATTTGTATATCTCAATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATCCATTTGTATATCTCAATAT
*
105602814 ATATATACACATACGCGTGTCTAGTTAGAAT-TTTGGACAAG-T-T-ATCTACCTTATCTGTAAA
66 ATATAT--ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAA
105602875 ATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAA
129 ATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAA
105602933 AACTTTTTTT
Statistics
Matches: 752, Mismatches: 55, Indels: 42
0.89 0.06 0.05
Matches are distributed among these distances:
206 190 0.25
207 1 0.00
215 273 0.36
216 4 0.01
217 22 0.03
218 9 0.01
219 111 0.15
220 77 0.10
221 8 0.01
222 1 0.00
223 30 0.04
224 1 0.00
225 25 0.03
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (217 bp):
TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATCCATTTGTATATCTCAATAT
ATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAAAT
GTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATGACCC
ATCAAGGCTCTTAGCAGAATCG
Found at i:105602624 original size:421 final size:431
Alignment explanation
Indices: 105601886--105602932 Score: 1573
Period size: 421 Copynumber: 2.4 Consensus size: 431
105601876 ATGTGAGCCT
* *
105601886 TGAGATAAAACCCGAAGTAGAATTAAGACACATCAATATATATATCCATTTGTATATCTCAATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATCCATTTGTATATCTC---A-
* ** *
105601951 ATATATATATAACATACGCATGTCTAGTTAGAATATTTAGACAAGTTGTCGGCCACCTTATCTGT
62 ATATATATATAACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGT
* *
105602016 AAAATGTGATCATTTTGGCAAATATTCCATATTTAAGAACTTTCCTGGAAAATTTTCTGAAACTA
127 AAAATGTGATCATTTTAGCAAATATTCCAT-CTTAAGAACTTTCCTGGAAAATTTTCTGAAACTA
* * * *
105602081 TGACCCATCAAGGCTCTTGGCAGAATCGTAAGATAAAACCTGAAGCAGAATTGAGACACATCAAT
191 TGACCCATCAAGACTCTTAGCAGAATCGTAAGATAAAACCCGAAGCAGAACTGAGACACATCAAT
* *
105602146 ATATATATATCCATTTGTATATCTCAATAGATATACACATACGCATGTGTGGTTAGAATATTTGG
256 ATATATATATCCATTTG---ATCT-AATA-ATATA-ACATACGCATGTCTAGTTAGAATATTTGG
*
105602211 ACAAGTTGTCCTCTACCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACT
315 ACAAGTTGTCATCTACCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACT
* *
105602276 TTCCTGGAAATTTTTCTGAAACTATGACCCATCAAGGCTCTTAGCAGAATGG
380 TTACTGGAAATTTTTCTGAAACTATGACCCATCAAGGCTCTTAGCAGAATCG
* *
105602328 TGAGATAAAACCCGAAGCAGAATTGAGACACTTC-A-ATATATATCCAATTGTATATCTCAATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATCCATTTGTATATCTCAATAT
* *
105602391 ATATAT-ACATACGCATGTCTAGTTAGACTATTTGGACAAGTTGTCATCTATCTTATCTGTAAAA
66 ATATATAACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAAA
*
105602455 TGTGATTATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACC
131 TGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACC
* * *
105602520 CATCAAGACTCTTAGCAGAGTCGTGAGATAGAACCCGAAGCAGAACTGAGACACATC-A-ATATA
196 CATCAAGACTCTTAGCAGAATCGTAAGATAAAACCCGAAGCAGAACTGAGACACATCAATATATA
*
105602583 TATATCCATTTG-T-T-AT-ATAT-ACATACGCATGTCTAGTTAGAATATTTGGTCAAGTTGTCA
261 TATATCCATTTGATCTAATAATATAACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCA
105602643 TCTACCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTACTGGAAAT
326 TCTACCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTACTGGAAAT
* * *
105602708 TTTTCTGAAACTATGACTCATCAAGGCTCTTAGCTGAGTCG
391 TTTTCTGAAACTATGACCCATCAAGGCTCTTAGCAGAATCG
* * * *
105602749 TGAGGTAAAACCCAAAGCAGAATTGAGCCACACCAATATATATATCCATTTGTATATCTCAATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATCCATTTGTATATCTCAATAT
*
105602814 ATATATACACATACGCGTGTCTAGTTAGAAT-TTTGGACAAG-T-T-ATCTACCTTATCTGTAAA
66 ATATATA-ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAA
*
105602875 ATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAA
130 ATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAA
105602933 AACTTTTTTT
Statistics
Matches: 561, Mismatches: 40, Indels: 29
0.89 0.06 0.05
Matches are distributed among these distances:
421 239 0.43
422 2 0.00
423 38 0.07
424 10 0.02
425 23 0.04
427 1 0.00
428 1 0.00
432 17 0.03
433 1 0.00
434 88 0.16
435 76 0.14
436 10 0.02
437 1 0.00
440 22 0.04
441 1 0.00
442 31 0.06
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (431 bp):
TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATCCATTTGTATATCTCAATAT
ATATATAACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAAA
TGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACC
CATCAAGACTCTTAGCAGAATCGTAAGATAAAACCCGAAGCAGAACTGAGACACATCAATATATA
TATATCCATTTGATCTAATAATATAACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCA
TCTACCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTACTGGAAAT
TTTTCTGAAACTATGACCCATCAAGGCTCTTAGCAGAATCG
Found at i:105602715 original size:206 final size:208
Alignment explanation
Indices: 105602387--105602932 Score: 807
Period size: 206 Copynumber: 2.6 Consensus size: 208
105602377 GTATATCTCA
* *
105602387 ATATATATATACATACGCATGTCTAGTTAGACTATTTGGACAAGTTGTCATCTATCTTATCTGTA
1 ATATATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTA
* *
105602452 AAATGTGATTATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATG
66 AAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATG
* * *
105602517 ACCCATCAAGACTCTTAGCAGAGTCGTGAGATAGAACCCGAAGCAGAACTGAGACACATCAATAT
131 ACCCATCAAGACTCTTAGCAGAGTCGTGAGATAAAACCCAAAGCAGAACTGAGACACACCAATAT
105602582 ATATATCCATTTG
196 ATATATCCATTTG
*
105602595 -T-TATATATACATACGCATGTCTAGTTAGAATATTTGGTCAAGTTGTCATCTACCTTATCTGTA
1 ATATATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTA
*
105602658 AAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTACTGGAAATTTTTCTGAAACTATG
66 AAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATG
* * * * * *
105602723 ACTCATCAAGGCTCTTAGCTGAGTCGTGAGGTAAAACCCAAAGCAGAATTGAGCCACACCAATAT
131 ACCCATCAAGACTCTTAGCAGAGTCGTGAGATAAAACCCAAAGCAGAACTGAGACACACCAATAT
105602788 ATATATCCATTTG
196 ATATATCCATTTG
*
105602801 TATATCTCAATATATATATACACATACGCGTGTCTAGTTAGAAT-TTTGGACAAG-T-T-ATCTA
1 ---------ATATATATAT--ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTA
105602862 CCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTT
55 CCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTT
105602927 CTGAAA
120 CTGAAA
105602933 AACTTTTTTT
Statistics
Matches: 307, Mismatches: 18, Indels: 19
0.89 0.05 0.06
Matches are distributed among these distances:
206 190 0.62
207 1 0.00
215 75 0.24
216 2 0.01
217 8 0.03
218 9 0.03
219 22 0.07
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (208 bp):
ATATATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTA
AAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACTATG
ACCCATCAAGACTCTTAGCAGAGTCGTGAGATAAAACCCAAAGCAGAACTGAGACACACCAATAT
ATATATCCATTTG
Found at i:105605227 original size:3 final size:3
Alignment explanation
Indices: 105605219--105605250 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
105605209 TGATTTCTTT
105605219 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
105605251 TTTAGTTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:105607365 original size:24 final size:23
Alignment explanation
Indices: 105607336--105607387 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 23
105607326 GTAACAAGTC
105607336 CATCTTCTTAGCTTTCACTAGAG
1 CATCTTCTTAGCTTTCACTAGAG
105607359 TCATCTTCTTAGCTTTCACTAGAG
1 -CATCTTCTTAGCTTTCACTAGAG
105607383 CATCT
1 CATCT
105607388 GTGGTGATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (23 bp):
CATCTTCTTAGCTTTCACTAGAG
Found at i:105611996 original size:19 final size:21
Alignment explanation
Indices: 105611974--105612023 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
105611964 TTGTTTTATG
105611974 AAAAATAATT-TAG-TCAATA
1 AAAAATAATTATAGATCAATA
* *
105611993 AAAAATGACTTATAGATTAATA
1 AAAAAT-AATTATAGATCAATA
105612015 AAAAATAAT
1 AAAAATAAT
105612024 ATATTTTTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 6 0.24
20 3 0.12
21 5 0.20
22 11 0.44
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.30
Consensus pattern (21 bp):
AAAAATAATTATAGATCAATA
Found at i:105613257 original size:13 final size:14
Alignment explanation
Indices: 105613235--105613268 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
105613225 TATTATTCAG
105613235 TTTTTAGAAAT-AA
1 TTTTTAGAAATCAA
*
105613248 TTTTTCGAAATCAA
1 TTTTTAGAAATCAA
105613262 TTTTTAG
1 TTTTTAG
105613269 TGAAACAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (14 bp):
TTTTTAGAAATCAA
Found at i:105615463 original size:22 final size:22
Alignment explanation
Indices: 105615415--105615463 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
105615405 TGAATTATCT
* *
105615415 GTTTTCTTTTAATATTTTATTA
1 GTTTTCTTTTAATATTTAAATA
* *
105615437 ATTTTCTTTTTATATTTAAATA
1 GTTTTCTTTTAATATTTAAATA
105615459 GTTTT
1 GTTTT
105615464 GAATTTTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (22 bp):
GTTTTCTTTTAATATTTAAATA
Found at i:105615867 original size:12 final size:12
Alignment explanation
Indices: 105615844--105615892 Score: 62
Period size: 12 Copynumber: 3.8 Consensus size: 12
105615834 AAAATATTTT
105615844 CAATATATTAAAA
1 CAATA-ATTAAAA
105615857 CAATAATTAAAA
1 CAATAATTAAAA
*
105615869 GTAAATAATTAAAA
1 --CAATAATTAAAA
105615883 CAATAATTAA
1 CAATAATTAA
105615893 TATCATGCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 16 0.50
13 5 0.16
14 11 0.34
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (12 bp):
CAATAATTAAAA
Found at i:105617207 original size:373 final size:372
Alignment explanation
Indices: 105616707--105617452 Score: 1465
Period size: 373 Copynumber: 2.0 Consensus size: 372
105616697 GATTAAACTA
105616707 AGCAAATGATCAGTGAGTTGACTTAATCCTGAGTCGGGCCGATGCAAAATTTTAAGTTTTTTTTA
1 AGCAAATGATCAGTGAGTTGACTTAATCCTGAGTCGGGCCGATGCAAAATTTTAAGTTTTTTTTA
105616772 GGTTCAAGTTCGGTTGACTCAAAAAATAGGCCTAAAATTCTGTCTAAGTCCGGTCCAAATTAAAA
66 GGTTCAAGTTCGGTTGACTCAAAAAATAGGCCTAAAATTCTGTCTAAGTCCGGTCCAAATTAAAA
105616837 ATGTTAAACTCGAGTTTGACCCGACTTGCCTGTATTAATTTTTTTAGATTATTTTTGTATAAAAA
131 ATGTTAAACTCGAGTTTGACCCGACTTGCCTGTATTAATTTTTTTAGATTATTTTTGTATAAAAA
105616902 TAAATTTAAAAAATATAATACATCAAATACACTAAAAACATTAAAATAAATGTTTCCTAACAAAA
196 TAAATTTAAAAAATATAATACATCAAATACACTAAAAACATTAAAATAAATGTTTCCTAACAAAA
105616967 TTAAAAATACATTAAAAAATCTTTATACTTAAATAGCACTAAGATATTTGCAACTTAACGAGTAA
261 TTAAAAATACATTAAAAAATCTTTATACTTAAATAGCACTAAGATATTTGCAACTTAACGAGTAA
105617032 ATGCCTCTAAAATAGTAGTAAAATTAACAATAAAACAAGAGTTATAC
326 ATGCCTCTAAAATAGTAGTAAAATTAACAATAAAACAAGAGTTATAC
105617079 AGCAAATGATCAGTGAGTTGACTTAATCCTGAGTCGGGCCGATGCAAAATTTTAAGTTTTTTTTT
1 AGCAAATGATCAGTGAGTTGACTTAATCCTGAGTCGGGCCGATGCAAAATTTTAAG-TTTTTTTT
105617144 AGGTTCAAGTTCGGTTGACTCAAAAAATAGGCCTAAAATTCTGTCTAAGTCCGGTCCAAATTAAA
65 AGGTTCAAGTTCGGTTGACTCAAAAAATAGGCCTAAAATTCTGTCTAAGTCCGGTCCAAATTAAA
*
105617209 AATGTTAAACTCGAGTTTGACCCGACTTGTCTGTATTAATTTTTTTAGATTATTTTTGTATAAAA
130 AATGTTAAACTCGAGTTTGACCCGACTTGCCTGTATTAATTTTTTTAGATTATTTTTGTATAAAA
105617274 ATAAATTTAAAAAATATAATACATCAAATACACTAAAAACATTAAAATAAATGTTTCCTAACAAA
195 ATAAATTTAAAAAATATAATACATCAAATACACTAAAAACATTAAAATAAATGTTTCCTAACAAA
105617339 ATTAAAAATACATTAAAAAATCTTTATACTTAAATAGCACTAAGATATTTGCAACTTAACGAGTA
260 ATTAAAAATACATTAAAAAATCTTTATACTTAAATAGCACTAAGATATTTGCAACTTAACGAGTA
*
105617404 AATGCCTCTAAAATAGTAGTAAAATTAACAATAAAACAATAGTTATAC
325 AATGCCTCTAAAATAGTAGTAAAATTAACAATAAAACAAGAGTTATAC
105617452 A
1 A
105617453 ATATCCAAAC
Statistics
Matches: 371, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
372 56 0.15
373 315 0.85
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (372 bp):
AGCAAATGATCAGTGAGTTGACTTAATCCTGAGTCGGGCCGATGCAAAATTTTAAGTTTTTTTTA
GGTTCAAGTTCGGTTGACTCAAAAAATAGGCCTAAAATTCTGTCTAAGTCCGGTCCAAATTAAAA
ATGTTAAACTCGAGTTTGACCCGACTTGCCTGTATTAATTTTTTTAGATTATTTTTGTATAAAAA
TAAATTTAAAAAATATAATACATCAAATACACTAAAAACATTAAAATAAATGTTTCCTAACAAAA
TTAAAAATACATTAAAAAATCTTTATACTTAAATAGCACTAAGATATTTGCAACTTAACGAGTAA
ATGCCTCTAAAATAGTAGTAAAATTAACAATAAAACAAGAGTTATAC
Found at i:105617895 original size:25 final size:26
Alignment explanation
Indices: 105617861--105617911 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
105617851 TATTATTCTA
105617861 CATTTAAATTTTATT-ATATATATTC
1 CATTTAAATTTTATTGATATATATTC
* *
105617886 CATTTAAATTTTTTTGATTTATATTC
1 CATTTAAATTTTATTGATATATATTC
105617912 AAATATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (26 bp):
CATTTAAATTTTATTGATATATATTC
Found at i:105617898 original size:26 final size:25
Alignment explanation
Indices: 105617861--105617911 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
105617851 TATTATTCTA
105617861 CATTTAAATTTTATT-ATATATATTC
1 CATTTAAATTTT-TTGATATATATTC
*
105617886 CATTTAAATTTTTTTGATTTATATTC
1 CATTTAAA-TTTTTTGATATATATTC
105617912 AAATATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (25 bp):
CATTTAAATTTTTTGATATATATTC
Found at i:105625053 original size:30 final size:30
Alignment explanation
Indices: 105625018--105625117 Score: 139
Period size: 30 Copynumber: 3.3 Consensus size: 30
105625008 CCCCCAGTTT
* * *
105625018 CAACTCCTCCACCCAG-TTCTCCTCCTCCCG
1 CAACTCCACCA-CCAGCTTCTCCACCTCCTG
*
105625048 CAACTCCACCACCTGCTTCTCCACCTCCTG
1 CAACTCCACCACCAGCTTCTCCACCTCCTG
*
105625078 CAACTCCACCTCCAGCTTCTCCACCTCCTG
1 CAACTCCACCACCAGCTTCTCCACCTCCTG
105625108 CAACTCCACC
1 CAACTCCACC
105625118 TCCCGCCACT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 3 0.05
30 60 0.95
ACGTcount: A:0.17, C:0.55, G:0.06, T:0.22
Consensus pattern (30 bp):
CAACTCCACCACCAGCTTCTCCACCTCCTG
Found at i:105625054 original size:15 final size:15
Alignment explanation
Indices: 105625036--105625188 Score: 110
Period size: 15 Copynumber: 10.3 Consensus size: 15
105625026 CCACCCAGTT
* *
105625036 CTCCTCCTCCCGCAA
1 CTCCACCTCCTGCAA
* **
105625051 CTCCACCACCTGCTT
1 CTCCACCTCCTGCAA
105625066 CTCCACCTCCTGCAA
1 CTCCACCTCCTGCAA
* **
105625081 CTCCACCTCCAGCTT
1 CTCCACCTCCTGCAA
105625096 CTCCACCTCCTGCAA
1 CTCCACCTCCTGCAA
* *
105625111 CTCCACCTCCCGCCA
1 CTCCACCTCCTGCAA
* * * **
105625126 CTCCTCCACCAGCTT
1 CTCCACCTCCTGCAA
* *
105625141 CTCCACCTCCCGCCA
1 CTCCACCTCCTGCAA
* *
105625156 CTCCACCACCAGCAA
1 CTCCACCTCCTGCAA
* *
105625171 C-CCCCCACCTGCAA
1 CTCCACCTCCTGCAA
105625185 CTCC
1 CTCC
105625189 TCCTGCTACC
Statistics
Matches: 106, Mismatches: 31, Indels: 2
0.76 0.22 0.01
Matches are distributed among these distances:
14 12 0.11
15 94 0.89
ACGTcount: A:0.17, C:0.58, G:0.07, T:0.18
Consensus pattern (15 bp):
CTCCACCTCCTGCAA
Found at i:105625108 original size:45 final size:45
Alignment explanation
Indices: 105625051--105625179 Score: 143
Period size: 45 Copynumber: 2.9 Consensus size: 45
105625041 CCTCCCGCAA
* ** * *
105625051 CTCCACCACCTGCTTCTCCACCTCCTGCAACTCCACCTCCAGCTT
1 CTCCACCTCCTGCAACTCCACCTCCCGCAACTCCACCACCAGCTT
* *
105625096 CTCCACCTCCTGCAACTCCACCTCCCGCCACTCCTCCACCAGCTT
1 CTCCACCTCCTGCAACTCCACCTCCCGCAACTCCACCACCAGCTT
* * * * *
105625141 CTCCACCTCCCGCCACTCCACCACCAGCAAC-CCCCCACC
1 CTCCACCTCCTGCAACTCCACCTCCCGCAACTCCACCACC
105625180 TGCAACTCCT
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 7 0.10
45 64 0.90
ACGTcount: A:0.17, C:0.59, G:0.06, T:0.18
Consensus pattern (45 bp):
CTCCACCTCCTGCAACTCCACCTCCCGCAACTCCACCACCAGCTT
Found at i:105628610 original size:17 final size:17
Alignment explanation
Indices: 105628584--105628618 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
105628574 TATATTAGTG
* *
105628584 TATATTTTTTTATTATA
1 TATATATTTTTAATATA
105628601 TATATATTTTTAATATA
1 TATATATTTTTAATATA
105628618 T
1 T
105628619 TTATGTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TATATATTTTTAATATA
Found at i:105628721 original size:30 final size:30
Alignment explanation
Indices: 105628666--105628740 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
105628656 TTTATCCCTA
*
105628666 ATAT-TTATGTATTATGTAAATA-TTTTAAT
1 ATATATTATGTA-TATCTAAATATTTTTAAT
* **
105628695 ATTATATTATGTATATCTATATATTTTTCGT
1 A-TATATTATGTATATCTAAATATTTTTAAT
105628726 ATATATTATGTATAT
1 ATATATTATGTATAT
105628741 ATGTTTTCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 25 0.64
31 13 0.33
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.56
Consensus pattern (30 bp):
ATATATTATGTATATCTAAATATTTTTAAT
Found at i:105628753 original size:24 final size:25
Alignment explanation
Indices: 105628712--105628767 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
105628702 TATGTATATC
*
105628712 TATATATTTTTCGTATATAT-TATG-
1 TATATATTTTTCGAATAT-TGTATGT
105628736 TATATATGTTTTC-AATATTGTATGT
1 TATATAT-TTTTCGAATATTGTATGT
105628761 TATATAT
1 TATATAT
105628768 ATTATTGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 15 0.54
25 12 0.43
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (25 bp):
TATATATTTTTCGAATATTGTATGT
Found at i:105628858 original size:19 final size:19
Alignment explanation
Indices: 105628824--105628860 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
105628814 CTATTTTATA
* *
105628824 TATATTTCTTATATCATTG
1 TATATTTCTAACATCATTG
105628843 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
105628861 ATTATTTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.14, G:0.03, T:0.54
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:105628965 original size:20 final size:18
Alignment explanation
Indices: 105628929--105628968 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
105628919 TCATTTCTAA
*
105628929 TATATATTATATGTATTT
1 TATATATTATATATATTT
105628947 TATATATTATGTATATATTT
1 TATATATTA--TATATATTT
105628967 TA
1 TA
105628969 ATGTTATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (18 bp):
TATATATTATATATATTT
Found at i:105631480 original size:20 final size:20
Alignment explanation
Indices: 105631452--105631493 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
105631442 TAAAAAAATA
* *
105631452 AAATATAAAAATTTAAATTT
1 AAATATAAAAACTAAAATTT
*
105631472 AAATTTAAAAACTAAAATTT
1 AAATATAAAAACTAAAATTT
105631492 AA
1 AA
105631494 TCATTATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
AAATATAAAAACTAAAATTT
Found at i:105640358 original size:13 final size:13
Alignment explanation
Indices: 105640340--105640365 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105640330 TTGTCCTAGT
105640340 GATTAAATTAAAA
1 GATTAAATTAAAA
105640353 GATTAAATTAAAA
1 GATTAAATTAAAA
105640366 ATAAGTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (13 bp):
GATTAAATTAAAA
Found at i:105643905 original size:18 final size:18
Alignment explanation
Indices: 105643882--105643931 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 18
105643872 AATTCAATCA
105643882 ATATTATATTTTATTTTT
1 ATATTATATTTTATTTTT
105643900 ATATTA-A-TTT-TTTTT
1 ATATTATATTTTATTTTT
* *
105643915 AAATT-TATTATATTTTT
1 ATATTATATTTTATTTTT
105643932 TTCACTTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
15 10 0.37
16 5 0.19
17 6 0.22
18 6 0.22
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATATTATATTTTATTTTT
Found at i:105644306 original size:31 final size:29
Alignment explanation
Indices: 105644267--105644341 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 29
105644257 TTAATAATTT
105644267 AAGATAAAATTTAAAATATAAAAAATA-AAA
1 AAGATAAAATTTAAAA-AT-AAAAATACAAA
105644297 AAGATTAAAATTTTAAAAATAAAAATACAAA
1 AAGA-TAAAA-TTTAAAAATAAAAATACAAA
105644328 AA-ATATAAATTTAA
1 AAGATA-AAATTTAA
105644342 CTAAAATCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
29 7 0.17
30 15 0.37
31 12 0.29
32 7 0.17
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (29 bp):
AAGATAAAATTTAAAAATAAAAATACAAA
Found at i:105646632 original size:78 final size:78
Alignment explanation
Indices: 105646503--105646656 Score: 308
Period size: 78 Copynumber: 2.0 Consensus size: 78
105646493 ATTTCTATGG
105646503 TTAAATATTGATAAACACTGACTACATCTTCATATCTCCTTGGATTCCTTGAGCTGAAGAAACAT
1 TTAAATATTGATAAACACTGACTACATCTTCATATCTCCTTGGATTCCTTGAGCTGAAGAAACAT
105646568 AATTTTCCTTTGC
66 AATTTTCCTTTGC
105646581 TTAAATATTGATAAACACTGACTACATCTTCATATCTCCTTGGATTCCTTGAGCTGAAGAAACAT
1 TTAAATATTGATAAACACTGACTACATCTTCATATCTCCTTGGATTCCTTGAGCTGAAGAAACAT
105646646 AATTTTCCTTT
66 AATTTTCCTTT
105646657 ATTTTTCAGT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (78 bp):
TTAAATATTGATAAACACTGACTACATCTTCATATCTCCTTGGATTCCTTGAGCTGAAGAAACAT
AATTTTCCTTTGC
Found at i:105657537 original size:24 final size:23
Alignment explanation
Indices: 105657510--105657595 Score: 61
Period size: 24 Copynumber: 3.6 Consensus size: 23
105657500 TTATGTGCAT
105657510 GTATGTATTATAAAGTATATAAA
1 GTATGTATTATAAAGTATATAAA
*
105657533 GGTATATA-TATACAAGGGTATATAAA
1 -GTATGTATTATA-AA--GTATATAAA
* *
105657559 -TAAGTAAGATATAAAGTATAT-AA
1 GTATGT-A-TTATAAAGTATATAAA
*
105657582 GTATGTATTTTAAA
1 GTATGTATTATAAA
105657596 AATATATATA
Statistics
Matches: 49, Mismatches: 6, Indels: 16
0.69 0.08 0.23
Matches are distributed among these distances:
22 5 0.10
23 7 0.14
24 21 0.43
25 1 0.02
26 11 0.22
27 4 0.08
ACGTcount: A:0.48, C:0.01, G:0.15, T:0.36
Consensus pattern (23 bp):
GTATGTATTATAAAGTATATAAA
Found at i:105659838 original size:44 final size:43
Alignment explanation
Indices: 105659704--105660072 Score: 236
Period size: 44 Copynumber: 8.6 Consensus size: 43
105659694 ATCTACTCTG
* * ** * *
105659704 CTGTAACCTCA-GAAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCAATCTGCTCCA
* * ** * *
105659747 CTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCTCTG-CTTCAATCTGCTCCA
*
105659790 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCT-GCTTCAATCTGCTCCA
* * * ** *
105659834 CTGTAACCTCAGGGAGATAAGATCTGAAATTCTCCGGTCTACTCCA
1 CTGTAACCTCAGGGAGATAAGATCT---CTGCTTCAATCTGCTCCA
* * * * * *
105659880 CTGTAACCTCAGGGAAATAAGA-C-CTGATGT-GATTTTCTCTA
1 CTGTAACCTCAGGGAGATAAGATCTCTGCT-TCAATCTGCTCCA
* * *
105659921 CTGTAACTTCAGAGAGATAAGATC-CT--TT-AATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTGCTTCAATCTGCTCCA
* ** * * * ** *
105659960 TTGTAATATCAAGGAGATAGGAT-TACTATCTTTGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCT-CT-GCTTCAATCTGCTCCA
*
105660004 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCT-GCTTCAATCTGCTCCA
105660048 CTGTAACCTCAGGGAGATAAGATCT
1 CTGTAACCTCAGGGAGATAAGATCT
105660073 GAAATTCTTT
Statistics
Matches: 249, Mismatches: 61, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
39 24 0.10
40 3 0.01
41 28 0.11
42 4 0.02
43 42 0.17
44 112 0.45
45 3 0.01
46 32 0.13
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
CTGTAACCTCAGGGAGATAAGATCTCTGCTTCAATCTGCTCCA
Found at i:105660031 original size:214 final size:213
Alignment explanation
Indices: 105659653--105660119 Score: 677
Period size: 214 Copynumber: 2.2 Consensus size: 213
105659643 GTTGTTTTCA
* * * * *
105659653 GTCTATTCCACTGCATCTTCAGGGAAATAAGACTTGATGCGATCTACTCTGCTGTAACCTCAGAA
1 GTCTATTCCACTGTAACCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAA
* * *
105659718 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATC
66 GATAAGATCC----TTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGGATACTATCTTCGATC
105659783 TGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
127 TGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
105659848 AGATAAGATCTGAAATTCTCCG
192 AGATAAGATCTGAAATTCTCCG
* * * * *
105659870 GTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATTTTCTCTACTGTAACTTCAGAG
1 GTCTATTCCACTGTAACCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGA-
* *
105659935 AGATAAGATCC-TTTAATCCGCTCCATTGTAA-TATCAAGGAGATAGGATTACTATCTTTGATCT
65 AGATAAGATCCTTTTAATCCGCTCCACTGTAACT-TCAAGGAGATAGGA-TACTATCTTCGATCT
105659998 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGA
128 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGA
**
105660063 GATAAGATCTGAAATTCTTTG
193 GATAAGATCTGAAATTCTCCG
* * *
105660084 GTCTGTTCCACTGTAATCTCAGGGAGATAAGACCTG
1 GTCTATTCCACTGTAACCTCAGGGAAATAAGACCTG
105660120 TATAATAAAC
Statistics
Matches: 226, Mismatches: 21, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
212 1 0.00
213 32 0.14
214 128 0.57
217 54 0.24
218 11 0.05
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (213 bp):
GTCTATTCCACTGTAACCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAA
GATAAGATCCTTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGGATACTATCTTCGATCTGCT
CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGAT
AAGATCTGAAATTCTCCG
Found at i:105660111 original size:46 final size:44
Alignment explanation
Indices: 105659741--105660115 Score: 235
Period size: 44 Copynumber: 8.6 Consensus size: 44
105659731 ATTTTAATCC
* *
105659741 GCTCCACTGTAA-CTTCAGGGAGATAGGA--TAGTGTCTTCGATCT
1 GCTCCACTGTAATC-TCAGGGAGATAAGATCTA-TGTCTTTGATCT
* * * **
105659784 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTATGTCTTTGATCT
* ** *
105659828 GCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTCCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCT---ATGTCTTTGATCT
* * * * *
105659874 ACTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATTT--TCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCT-ATGT-CTTTGATCT
* * *
105659918 -CT--ACTGTAA-CTTCAGAGAGATAAGATC-----CTTTAATCC
1 GCTCCACTGTAATC-TCAGGGAGATAAGATCTATGTCTTTGATCT
* * * * *
105659954 GCTCCATTGTAATATCAAGGAGATAGGAT-TACTATCTTTGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTA-TGTCTTTGATCT
* * * **
105659998 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTATGTCTTTGATCT
* *
105660042 GCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTTGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCT---ATGTCTTTGATCT
*
105660088 GTTCCACTGTAATCTCAGGGAGATAAGA
1 GCTCCACTGTAATCTCAGGGAGATAAGA
105660116 CCTGTATAAT
Statistics
Matches: 257, Mismatches: 50, Indels: 47
0.73 0.14 0.13
Matches are distributed among these distances:
34 3 0.01
36 2 0.01
37 2 0.01
39 18 0.07
40 1 0.00
41 20 0.08
43 26 0.10
44 113 0.44
45 3 0.01
46 67 0.26
47 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
GCTCCACTGTAATCTCAGGGAGATAAGATCTATGTCTTTGATCT
Found at i:105684307 original size:24 final size:23
Alignment explanation
Indices: 105684280--105684365 Score: 61
Period size: 24 Copynumber: 3.6 Consensus size: 23
105684270 TTACGTGCAT
105684280 GTATGTATTATAAAGTATATAAA
1 GTATGTATTATAAAGTATATAAA
*
105684303 GGTATATA-TATACAAGGGTATATAAA
1 -GTATGTATTATA-AA--GTATATAAA
* *
105684329 -TAAGTAAGATATAAAGTATAT-AA
1 GTATGT-A-TTATAAAGTATATAAA
*
105684352 GTATGTATTTTAAA
1 GTATGTATTATAAA
105684366 AATATATATA
Statistics
Matches: 49, Mismatches: 6, Indels: 16
0.69 0.08 0.23
Matches are distributed among these distances:
22 5 0.10
23 7 0.14
24 21 0.43
25 1 0.02
26 11 0.22
27 4 0.08
ACGTcount: A:0.48, C:0.01, G:0.15, T:0.36
Consensus pattern (23 bp):
GTATGTATTATAAAGTATATAAA
Found at i:105687397 original size:21 final size:21
Alignment explanation
Indices: 105687345--105687397 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 21
105687335 TATAAAAAAT
105687345 ATTATATTAATTATATATTTAA
1 ATTATATT-ATTATATATTTAA
*
105687367 ATAATAATTA-TATATATTTATA
1 ATTAT-ATTATTATATATTTA-A
*
105687389 TTTATATTA
1 ATTATATTA
105687398 AATCACTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 14 0.54
22 9 0.35
23 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTATATTATTATATATTTAA
Found at i:105690996 original size:16 final size:15
Alignment explanation
Indices: 105690955--105691008 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
105690945 AATAAATTTT
105690955 TATTTTTA-TTTA-A
1 TATTTTTATTTTATA
105690968 TATTTATTAATTTTATA
1 TATTT-TT-ATTTTATA
105690985 TACTTTTTATTTTATA
1 TA-TTTTTATTTTATA
*
105691001 AATTTTTA
1 TATTTTTA
105691009 AACATAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
13 5 0.14
14 2 0.06
15 7 0.20
16 13 0.37
17 5 0.14
18 3 0.09
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTTTTATTTTATA
Found at i:105693053 original size:55 final size:53
Alignment explanation
Indices: 105692900--105693101 Score: 180
Period size: 55 Copynumber: 3.8 Consensus size: 53
105692890 ATTAGGGTTT
* * * * *
105692900 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGAAACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAA-GTTTATAAGGA
* * *
105692955 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 AAGGAAACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TATAAGG-A
**
105693011 AAGG-TCCCATGTAAGACCATGTCAAGACATGGCAATGGTAAG-TT-TAA--A
1 AAGGAAACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTATAAGGA
* ** * * *
105693059 AAGGATACCACATAATACCATGACAAGTCATGGCAATGGTAAG
1 AAGGAAACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG
105693102 GTACCCGCGT
Statistics
Matches: 124, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
48 5 0.04
49 32 0.26
51 3 0.02
52 1 0.01
53 3 0.02
54 6 0.05
55 70 0.56
56 4 0.03
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (53 bp):
AAGGAAACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTATAAGGA
Found at i:105695732 original size:12 final size:12
Alignment explanation
Indices: 105695715--105695740 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
105695705 CCAAATTAGT
105695715 TATATAAATATA
1 TATATAAATATA
105695727 TATATAAATATA
1 TATATAAATATA
105695739 TA
1 TA
105695741 CATGTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATAAATATA
Found at i:105695740 original size:20 final size:20
Alignment explanation
Indices: 105695715--105695755 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
105695705 CCAAATTAGT
105695715 TATATAAATATATATATAAA
1 TATATAAATATATATATAAA
* *
105695735 TATATACATGTATATATAAA
1 TATATAAATATATATATAAA
105695755 T
1 T
105695756 TATCCTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (20 bp):
TATATAAATATATATATAAA
Found at i:105695872 original size:18 final size:18
Alignment explanation
Indices: 105695834--105695872 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
105695824 TATAATGTAT
* *
105695834 TATAAAAAAAATTAAATA
1 TATAAAAAAAATGAAACA
*
105695852 TATAAAAAAAATGAGACA
1 TATAAAAAAAATGAAACA
105695870 TAT
1 TAT
105695873 GTCATCTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.26
Consensus pattern (18 bp):
TATAAAAAAAATGAAACA
Found at i:105703230 original size:19 final size:20
Alignment explanation
Indices: 105703199--105703273 Score: 100
Period size: 19 Copynumber: 3.8 Consensus size: 20
105703189 CTAGTATGAT
105703199 AATTTTATAATTTTTTTACA
1 AATTTTATAATTTTTTTACA
105703219 AATTTT-TAATTTTTTTACA
1 AATTTTATAATTTTTTTACA
**
105703238 TTTTTTATAATTTTTTTAC-
1 AATTTTATAATTTTTTTACA
*
105703257 AACTTTATAATATTTTT
1 AATTTTATAAT-TTTTT
105703274 CTATTTTTCT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 25 0.52
20 23 0.48
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
AATTTTATAATTTTTTTACA
Found at i:105703244 original size:39 final size:39
Alignment explanation
Indices: 105703201--105703292 Score: 123
Period size: 39 Copynumber: 2.3 Consensus size: 39
105703191 AGTATGATAA
* *
105703201 TTTTATAATTTTTTTACAAATTTTTAATTTTTTTAC-ATT
1 TTTTATAATTTTTTTACAAATTTATAATATTTTT-CTATT
*
105703240 TTTTATAATTTTTTTACAACTTTATAATATTTTTCTATT
1 TTTTATAATTTTTTTACAAATTTATAATATTTTTCTATT
105703279 TTTCTATATATTTT
1 TTT-TATA-ATTTT
105703293 ATATTTTTTC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
38 1 0.02
39 37 0.79
40 4 0.09
41 5 0.11
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (39 bp):
TTTTATAATTTTTTTACAAATTTATAATATTTTTCTATT
Found at i:105703326 original size:28 final size:28
Alignment explanation
Indices: 105703269--105703329 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
105703259 CTTTATAATA
* * * *
105703269 TTTTTCTATTTTTCTATATATTTTATAT
1 TTTTTCTATTTTTCAATAAATGTTAAAT
105703297 TTTTTCTAATTTTT-AATAAATGTTAAAT
1 TTTTTCT-ATTTTTCAATAAATGTTAAAT
105703325 TTTTT
1 TTTTT
105703330 ATTAAAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 22 0.79
29 6 0.21
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (28 bp):
TTTTTCTATTTTTCAATAAATGTTAAAT
Found at i:105704280 original size:22 final size:22
Alignment explanation
Indices: 105704246--105704298 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
105704236 TAGGTTCACC
*
105704246 AATATTATTTTTTATTTT-TTTA
1 AATATT-TATTTTATTTTATTTA
*
105704268 AATTATTTATTTTATTTTATTTT
1 AA-TATTTATTTTATTTTATTTA
105704291 AATATTTA
1 AATATTTA
105704299 ATACTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (22 bp):
AATATTTATTTTATTTTATTTA
Found at i:105717134 original size:16 final size:16
Alignment explanation
Indices: 105717113--105717146 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
105717103 GAGTAAACGT
105717113 GGAAGAAAG-GAAGAAG
1 GGAAGAAAGTG-AGAAG
105717129 GGAAGAAAGTGAGAAG
1 GGAAGAAAGTGAGAAG
105717145 GG
1 GG
105717147 GCAAAGGTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 16 0.94
17 1 0.06
ACGTcount: A:0.50, C:0.00, G:0.47, T:0.03
Consensus pattern (16 bp):
GGAAGAAAGTGAGAAG
Found at i:105728845 original size:125 final size:125
Alignment explanation
Indices: 105728716--105729018 Score: 489
Period size: 125 Copynumber: 2.4 Consensus size: 125
105728706 GCCAAATGGT
*
105728716 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCACT
* * *
105728781 TTAATTTAAGAAAACATGGATGAAATTCCAAAAGGATATTCCGTATTTTAGTCGAATGAA
66 TTAATTTAAGAAAACATAGACGAAATTCCAAAAGGATATTCCATATTTTAGTCGAATGAA
* *
105728841 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACAAAATATTGCCTCGCT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCACT
* * *
105728906 TTAATTTAAGAGAACATAGACGAAATTTCAAAAGGATATTCTATATTTTAGTCGAATGAA
66 TTAATTTAAGAAAACATAGACGAAATTCCAAAAGGATATTCCATATTTTAGTCGAATGAA
* * * *
105728966 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAA
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAA
105729019 GATTTTCTCA
Statistics
Matches: 164, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
125 164 1.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.26
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCACT
TTAATTTAAGAAAACATAGACGAAATTCCAAAAGGATATTCCATATTTTAGTCGAATGAA
Found at i:105729887 original size:24 final size:22
Alignment explanation
Indices: 105729828--105729889 Score: 63
Period size: 24 Copynumber: 2.8 Consensus size: 22
105729818 AATGAATGCC
*
105729828 AAATGAA-TTTAAAGAAATAAT
1 AAATGAATTTTAAAGAAATAAA
* * *
105729849 GAATGGATTATAAAGAATATAAA
1 AAATGAATTTTAAAGAA-ATAAA
105729872 AACATGAATTTTAAAGAA
1 AA-ATGAATTTTAAAGAA
105729890 CTCAATGGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 5 0.16
22 8 0.26
23 5 0.16
24 13 0.42
ACGTcount: A:0.58, C:0.02, G:0.13, T:0.27
Consensus pattern (22 bp):
AAATGAATTTTAAAGAAATAAA
Found at i:105730246 original size:17 final size:17
Alignment explanation
Indices: 105730224--105730262 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
105730214 TTTGCAGGCA
*
105730224 AGTGGGGTAATGGAGTT
1 AGTGGGGTAATGAAGTT
*
105730241 AGTGGGGTGATGAAGTT
1 AGTGGGGTAATGAAGTT
105730258 AGTGG
1 AGTGG
105730263 CAAGTAGGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.23, C:0.00, G:0.49, T:0.28
Consensus pattern (17 bp):
AGTGGGGTAATGAAGTT
Found at i:105734388 original size:21 final size:22
Alignment explanation
Indices: 105734363--105734403 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
105734353 TTTTATCGAT
*
105734363 GATTAATTAAAAAT-TTTAATA
1 GATTAAATAAAAATATTTAATA
105734384 GATTAAATAAAAATATTTAA
1 GATTAAATAAAAATATTTAA
105734404 AGGATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (22 bp):
GATTAAATAAAAATATTTAATA
Found at i:105734438 original size:20 final size:19
Alignment explanation
Indices: 105734407--105734452 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
105734397 TATTTAAAGG
105734407 ATTTAAAATAAAT-ATAAA
1 ATTTAAAATAAATAATAAA
105734425 TATTTAAAACTAAATAATAAA
1 -ATTTAAAA-TAAATAATAAA
105734446 ATTTAAA
1 ATTTAAA
105734453 TGTTGAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.32
20 12 0.48
21 5 0.20
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTTAAAATAAATAATAAA
Found at i:105734600 original size:25 final size:25
Alignment explanation
Indices: 105734548--105734602 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
105734538 CATTAAATTG
*
105734548 AATTAAATTAATAGTAAAAAAAATA
1 AATTAAATTAATAATAAAAAAAATA
* *
105734573 AATTAAATTAATTAATTAAATAAA-A
1 AATTAAATTAA-TAATAAAAAAAATA
105734598 AATTA
1 AATTA
105734603 GTGACTTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (25 bp):
AATTAAATTAATAATAAAAAAAATA
Found at i:105746652 original size:19 final size:20
Alignment explanation
Indices: 105746630--105746673 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
105746620 CTTTTATTAA
105746630 TATTTAGAA-TCTTGAAAAT
1 TATTTAGAATTCTTGAAAAT
* *
105746649 TATTTTGAATTTTTGAAAAT
1 TATTTAGAATTCTTGAAAAT
105746669 TATTT
1 TATTT
105746674 TAACATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.52
Consensus pattern (20 bp):
TATTTAGAATTCTTGAAAAT
Found at i:105750573 original size:22 final size:22
Alignment explanation
Indices: 105750548--105750591 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
105750538 TAGTCTTATA
105750548 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
105750570 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
105750592 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:105750703 original size:15 final size:15
Alignment explanation
Indices: 105750683--105750739 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
105750673 TTCAATTATT
105750683 AATATTTTAATAATA
1 AATATTTTAATAATA
*
105750698 AATATTTATTATAATTATA
1 AATA--T-TT-TAATAATA
*
105750717 AATATATTAATAATA
1 AATATTTTAATAATA
*
105750732 AATGTTTT
1 AATATTTT
105750740 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.52
16 1 0.03
17 2 0.06
18 2 0.06
19 11 0.33
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:105750712 original size:19 final size:19
Alignment explanation
Indices: 105750685--105750721 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
105750675 CAATTATTAA
*
105750685 TATTTTAATAATAAATATT
1 TATTATAATAATAAATATT
*
105750704 TATTATAATTATAAATAT
1 TATTATAATAATAAATAT
105750722 ATTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATAATAATAAATATT
Found at i:105761480 original size:23 final size:23
Alignment explanation
Indices: 105761449--105762116 Score: 608
Period size: 23 Copynumber: 29.1 Consensus size: 23
105761439 AAATAAGTAC
* *
105761449 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
105761472 TTAAGCACTTCAATTTACAACAT
1 TTAAACACTTCAATTTACAGCAT
*
105761495 TTAAACACTTCAATTTGCAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
105761518 TTAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
*
105761542 TT-AACA-TCTCAA-TTACCAACAT
1 TTAAACACT-TCAATTTA-CAGCAT
* *
105761564 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTACAGC-AT
* * * *
105761586 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * * * *
105761609 CTAAACCCTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTACAGCAT
* *
105761632 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
105761655 TTAAGCCCTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
105761678 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* **
105761701 TCAAACACTTCAATTTGTAGCACT
1 TTAAACACTTCAATTTACAGCA-T
105761725 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* **
105761747 TCAAACACTTCAATTTGTAGCACT
1 TTAAACACTTCAATTTACAGCA-T
105761771 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
105761793 TTCAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
105761816 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
*
105761840 TT-AACACTTCAATTTACAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
105761862 TAAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
105761886 TT-AACATTTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCAT
*
105761908 TTAAAAACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
105761931 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
105761955 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
105761977 TAAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
105762001 TT-AACATTTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCAT
* * * *
105762023 TTATACACCTCAA-TTACAACAA
1 TTAAACACTTCAATTTACAGCAT
* * *
105762045 TAAAACA-TCTCAATTTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * * *
105762068 CTAAACACTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTACAGCAT
* *
105762091 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
105762114 TTA
1 TTA
105762117 CTACTAATAT
Statistics
Matches: 526, Mismatches: 94, Indels: 50
0.79 0.14 0.07
Matches are distributed among these distances:
22 50 0.10
23 459 0.87
24 17 0.03
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.33
Consensus pattern (23 bp):
TTAAACACTTCAATTTACAGCAT
Found at i:105762056 original size:22 final size:23
Alignment explanation
Indices: 105762003--105762059 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
105761993 GCAGCACTTT
* * *
105762003 AACATTTCAATTAACAACATTTA
1 AACATCTCAATTAACAACAATAA
* *
105762026 TACACCTCAATT-ACAACAATAA
1 AACATCTCAATTAACAACAATAA
105762048 AACATCTCAATT
1 AACATCTCAATT
105762060 TCCAGCAACT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (23 bp):
AACATCTCAATTAACAACAATAA
Found at i:105766879 original size:19 final size:17
Alignment explanation
Indices: 105766847--105766886 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
105766837 TGTTACTTAA
105766847 TTTTAAATTTTTTTCAT
1 TTTTAAATTTTTTTCAT
*
105766864 TTTTAACATATTTTTTTAT
1 TTTTAA-AT-TTTTTTCAT
105766883 TTTT
1 TTTT
105766887 TTCTTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 2 0.10
19 12 0.60
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTAAATTTTTTTCAT
Found at i:105766986 original size:7 final size:7
Alignment explanation
Indices: 105766976--105767041 Score: 78
Period size: 7 Copynumber: 9.0 Consensus size: 7
105766966 ATATGAACTA
*
105766976 AAATATT
1 AAATTTT
105766983 AAATTTT
1 AAATTTT
105766990 AAATTTT
1 AAATTTT
105766997 AAAATTTTT
1 -AAA-TTTT
* *
105767006 TATTTTT
1 AAATTTT
105767013 AAAATTTT
1 -AAATTTT
105767021 AAATTTT
1 AAATTTT
105767028 AAATTTT
1 AAATTTT
105767035 AAATTTT
1 AAATTTT
105767042 TTTTTTGAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
7 38 0.75
8 9 0.18
9 4 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
AAATTTT
Found at i:105767064 original size:38 final size:38
Alignment explanation
Indices: 105766975--105767071 Score: 126
Period size: 38 Copynumber: 2.5 Consensus size: 38
105766965 AATATGAACT
* *
105766975 AAAATATTAAATTTTAAATTTTAAAATTTTTTATTTTT
1 AAAATTTTAAATTTTAAATTTTAAAATTTTTTATTTTG
105767013 AAAATTTTAAATTTTAAATTTT-AAATTTTTT-TTTTG
1 AAAATTTTAAATTTTAAATTTTAAAATTTTTTATTTTG
*
105767049 AAGATTTTTATAATTTTTAAATT
1 AA-AATTTTA-AA-TTTTAAATT
105767072 AACATATAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
36 6 0.11
37 15 0.28
38 23 0.43
39 9 0.17
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (38 bp):
AAAATTTTAAATTTTAAATTTTAAAATTTTTTATTTTG
Found at i:105767892 original size:15 final size:15
Alignment explanation
Indices: 105767857--105767894 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
105767847 AACCCTTAAA
105767857 CCATAAACCATAATT
1 CCATAAACCATAATT
105767872 CC-TAAACACATAA-T
1 CCATAAAC-CATAATT
105767886 CCATAAACC
1 CCATAAACC
105767895 TTAAAACCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (15 bp):
CCATAAACCATAATT
Found at i:105767899 original size:22 final size:22
Alignment explanation
Indices: 105767850--105767899 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
105767840 ACCCCCCAAC
*
105767850 CCTTAAACCATAAACCATAATT
1 CCTTAAACCATAAACCATAATA
*
105767872 CC-TAAACACATAATCCATAA-A
1 CCTTAAAC-CATAAACCATAATA
105767893 CCTTAAA
1 CCTTAAA
105767900 ACCTTAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (22 bp):
CCTTAAACCATAAACCATAATA
Found at i:105768068 original size:7 final size:7
Alignment explanation
Indices: 105768036--105768168 Score: 51
Period size: 7 Copynumber: 19.0 Consensus size: 7
105768026 ATTAATTAAT
*
105768036 CTAAGCC
1 CTAAACC
105768043 CTAAACTC
1 CTAAAC-C
* *
105768051 ATAATCC
1 CTAAACC
105768058 CTAAACC
1 CTAAACC
*
105768065 CTAAATC
1 CTAAACC
* *
105768072 ATAAATC
1 CTAAACC
*
105768079 CTAAAAC
1 CTAAACC
*
105768086 ATAAACC
1 CTAAACC
105768093 CTAAACC
1 CTAAACC
* *
105768100 ATAAACA
1 CTAAACC
*
105768107 AT-AA-C
1 CTAAACC
*
105768112 CTTAACC
1 CTAAACC
*
105768119 CTTAACC
1 CTAAACC
105768126 ACT-AACTC
1 -CTAAAC-C
105768134 CT-AACAC
1 CTAAAC-C
105768141 CTAAACC
1 CTAAACC
*
105768148 TTAAACC
1 CTAAACC
*
105768155 C-CAACC
1 CTAAACC
105768161 CTTAAACC
1 C-TAAACC
105768169 ACCCTTAAAC
Statistics
Matches: 97, Mismatches: 21, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
5 1 0.01
6 9 0.09
7 72 0.74
8 15 0.15
ACGTcount: A:0.44, C:0.35, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:105768081 original size:14 final size:14
Alignment explanation
Indices: 105768059--105768105 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
105768049 TCATAATCCC
*
105768059 TAAACCCTAAATCA
1 TAAACCCTAAAACA
*
105768073 TAAATCCTAAAACA
1 TAAACCCTAAAACA
*
105768087 TAAACCCTAAACCA
1 TAAACCCTAAAACA
105768101 TAAAC
1 TAAAC
105768106 AATAACCTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (14 bp):
TAAACCCTAAAACA
Found at i:105768085 original size:22 final size:22
Alignment explanation
Indices: 105768036--105768083 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
105768026 ATTAATTAAT
*
105768036 CTAAGCCCTAAACTCATAATCC
1 CTAAACCCTAAACTCATAATCC
105768058 CTAAACCCTAAA-TCATAAAT-C
1 CTAAACCCTAAACTCAT-AATCC
105768079 CTAAA
1 CTAAA
105768084 ACATAAACCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.23
Consensus pattern (22 bp):
CTAAACCCTAAACTCATAATCC
Found at i:105768200 original size:15 final size:15
Alignment explanation
Indices: 105768174--105768209 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
105768164 AAACCACCCT
105768174 TAAACC-ATAATCCA
1 TAAACCTATAATCCA
105768188 TAAACCTATAATCCA
1 TAAACCTATAATCCA
105768203 TAAACCT
1 TAAACCT
105768210 TGAAATAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (15 bp):
TAAACCTATAATCCA
Found at i:105770954 original size:25 final size:25
Alignment explanation
Indices: 105770926--105770984 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
105770916 ATCCAGGTTG
* *
105770926 ATTTTAAA-AAAGCTATGACTAAAGA
1 ATTTGAAAGAAAGATAT-ACTAAAGA
*
105770951 ATTTGAAATGACAGATATACTAAAGA
1 ATTTGAAA-GAAAGATATACTAAAGA
105770977 ATTTGAAA
1 ATTTGAAA
105770985 TGACGGATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 7 0.24
26 16 0.55
27 6 0.21
ACGTcount: A:0.51, C:0.07, G:0.14, T:0.29
Consensus pattern (25 bp):
ATTTGAAAGAAAGATATACTAAAGA
Found at i:105770972 original size:26 final size:26
Alignment explanation
Indices: 105770943--105770994 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
105770933 AAAAGCTATG
105770943 ACTAAAGAATTTGAAATGACAGATAT
1 ACTAAAGAATTTGAAATGACAGATAT
*
105770969 ACTAAAGAATTTGAAATGACGGATAT
1 ACTAAAGAATTTGAAATGACAGATAT
105770995 TGGTGAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.27
Consensus pattern (26 bp):
ACTAAAGAATTTGAAATGACAGATAT
Found at i:105773152 original size:54 final size:54
Alignment explanation
Indices: 105773092--105773199 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
105773082 TGAAAGTAAA
* * *
105773092 AAAAAATATGATTTGTCATTCTTCTAAG-GTAAAGAAATAAGGATGGCGTGGAAT
1 AAAAAATATGATTTATCATTCTTCTAAGAG-AAAAAAATAAGGATGACGTGGAAT
* * *
105773146 AAAAAATATGATTTATTATTTTTCTATGAGAAAAAAATAAGGATGACGTGGAAT
1 AAAAAATATGATTTATCATTCTTCTAAGAGAAAAAAATAAGGATGACGTGGAAT
105773200 TAGAGTTTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 46 0.98
55 1 0.02
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (54 bp):
AAAAAATATGATTTATCATTCTTCTAAGAGAAAAAAATAAGGATGACGTGGAAT
Found at i:105776703 original size:9 final size:9
Alignment explanation
Indices: 105776689--105776713 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
105776679 CTTGGGTCAG
105776689 AACCTCTTC
1 AACCTCTTC
105776698 AACCTCTTC
1 AACCTCTTC
105776707 AACCTCT
1 AACCTCT
105776714 AATTCCTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.32
Consensus pattern (9 bp):
AACCTCTTC
Found at i:105776801 original size:21 final size:21
Alignment explanation
Indices: 105776775--105776815 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
105776765 ATCTGCTCAA
* *
105776775 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
105776796 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
105776816 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:105787297 original size:3 final size:3
Alignment explanation
Indices: 105787289--105787328 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
105787279 AATGGAAATT
* *
105787289 ATA ATA ATA ATA ATA ATA ACA ATA ATA CTA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
105787329 AACTTATGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:105790020 original size:27 final size:27
Alignment explanation
Indices: 105789988--105790059 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
105789978 TTGTGCCTTC
*
105789988 CTGACAGGCTCAACTAGTTGAGCCTAT
1 CTGACAGGCACAACTAGTTGAGCCTAT
* *
105790015 CTGACAGGCACGACTAGTTGTGCCT-T
1 CTGACAGGCACAACTAGTTGAGCCTAT
**
105790041 CTTGGTAGGCACAACTAGT
1 C-TGACAGGCACAACTAGT
105790060 GGGGCCCACA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.05
27 36 0.95
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (27 bp):
CTGACAGGCACAACTAGTTGAGCCTAT
Found at i:105793712 original size:33 final size:32
Alignment explanation
Indices: 105793673--105793770 Score: 106
Period size: 33 Copynumber: 3.0 Consensus size: 32
105793663 GTAGGATATG
105793673 GAGGTGGATATAGGCCGGGAGGAGTAGAGTACA
1 GAGGTGGATA-AGGCCGGGAGGAGTAGAGTACA
* * * * *
105793706 GCGGTGGATACGGCTCTGGAGGAGTTGAGTATA
1 GAGGTGGATAAGGC-CGGGAGGAGTAGAGTACA
* *
105793739 TAGGTGGATACAGGCCGGAAGGAGTAGAGTAC
1 GAGGTGGATA-AGGCCGGGAGGAGTAGAGTAC
105793771 TGAGATAAAT
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
32 3 0.06
33 45 0.88
34 3 0.06
ACGTcount: A:0.28, C:0.11, G:0.43, T:0.18
Consensus pattern (32 bp):
GAGGTGGATAAGGCCGGGAGGAGTAGAGTACA
Found at i:105795816 original size:22 final size:22
Alignment explanation
Indices: 105795782--105795845 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
105795772 TCAACATTTT
*
105795782 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
105795804 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
105795825 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
105795846 CATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:105795839 original size:15 final size:16
Alignment explanation
Indices: 105795819--105795850 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
105795809 ATATATAATA
105795819 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
105795834 ATATAAAAATTACATT
1 ATATAAAAATTACATT
105795850 A
1 A
105795851 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:105796260 original size:112 final size:114
Alignment explanation
Indices: 105795908--105796349 Score: 716
Period size: 112 Copynumber: 3.9 Consensus size: 114
105795898 ATACTAACAC
* * * *
105795908 AAAATAACTATAAAATTATTTTTTT-AAATACATTACTAAAAAAAATCACAATACATTAATACAC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAAT--A-
105795972 ACTAAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAAT
63 ACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
105796022 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAATACAC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAATA-AC
105796087 TAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
65 TAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* *
105796137 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACT-AAAAAAATTACAATACGCTAAT-ACT
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAATAACT
105796200 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
66 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
105796249 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACT-AAAAAAATCACAATACACTAATACAC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAATA-AC
* *
105796313 TAAACTACTAAACACTAACAATTTATATAACCAAATC
65 TAAACCACTAAACACTAACAATTTATATAACCTAATC
105796350 AACTATAAAA
Statistics
Matches: 312, Mismatches: 11, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
112 109 0.35
113 25 0.08
114 80 0.26
115 98 0.31
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (114 bp):
AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAATAACT
AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:105803951 original size:37 final size:37
Alignment explanation
Indices: 105803887--105804080 Score: 264
Period size: 37 Copynumber: 5.0 Consensus size: 37
105803877 TACGTATGAT
*
105803887 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
105803923 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
105803960 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
105803997 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
105804040 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
105804080 C
1 C
105804081 GAAGCTATCA
Statistics
Matches: 144, Mismatches: 4, Indels: 19
0.86 0.02 0.11
Matches are distributed among these distances:
36 10 0.07
37 91 0.63
39 2 0.01
40 4 0.03
41 1 0.01
42 1 0.01
43 3 0.02
44 2 0.01
46 30 0.21
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:105804050 original size:46 final size:46
Alignment explanation
Indices: 105803997--105804363 Score: 437
Period size: 46 Copynumber: 7.6 Consensus size: 46
105803987 TAAGTGTAGC
* **
105803997 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
105804043 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
105804089 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
105804141 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
105804193 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * *
105804239 AACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
105804285 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
105804337 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
105804364 AGTACTCAAA
Statistics
Matches: 290, Mismatches: 18, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 129 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:105804116 original size:52 final size:52
Alignment explanation
Indices: 105804040--105804357 Score: 417
Period size: 52 Copynumber: 6.3 Consensus size: 52
105804030 TAGCTAAAGC
* *
105804040 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
105804093 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
105804145 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
105804197 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
105804243 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
105804289 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
105804341 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
105804358 ATCAGAAGTA
Statistics
Matches: 238, Mismatches: 17, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
46 83 0.35
47 2 0.01
48 2 0.01
52 133 0.56
53 18 0.08
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:105804238 original size:196 final size:196
Alignment explanation
Indices: 105803997--105804349 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
105803987 TAAGTGTAGC
* * * * * *
105803997 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
*
105804062 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
105804127 GTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
131 GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
105804192 T
196 T
*
105804193 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
*
105804258 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
105804323 GTAGCTAAAGCTACCACTTATCACTTT
131 GTAGCCAAAGCTACCACTTATCACTTT
105804350 ATCACTTGAT
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (196 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
T
Found at i:105804353 original size:98 final size:97
Alignment explanation
Indices: 105803997--105804363 Score: 492
Period size: 98 Copynumber: 3.7 Consensus size: 97
105803987 TAAGTGTAGC
* * * *
105803997 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
105804062 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
105804096 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
105804161 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
105804200 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
105804260 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
105804292 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
105804357 GATCAGA
65 GATCAGA
105804364 AGTACTCAAA
Statistics
Matches: 238, Mismatches: 17, Indels: 27
0.84 0.06 0.10
Matches are distributed among these distances:
92 39 0.16
94 1 0.00
96 1 0.00
98 148 0.62
99 7 0.03
100 2 0.01
101 1 0.00
104 39 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:105812508 original size:21 final size:21
Alignment explanation
Indices: 105812484--105812524 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
105812474 TGGAAATAAA
*
105812484 TATATGAAA-AATTTAGAAAAC
1 TATAT-AAATAATCTAGAAAAC
105812505 TATATAAATAATCTAGAAAA
1 TATATAAATAATCTAGAAAA
105812525 AAACATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.29
Consensus pattern (21 bp):
TATATAAATAATCTAGAAAAC
Found at i:105812838 original size:7 final size:7
Alignment explanation
Indices: 105812810--105812850 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
105812800 TTTATAAAAA
105812810 ATATTAT
1 ATATTAT
* *
105812817 AAATTTT
1 ATATTAT
105812824 AT-TTAT
1 ATATTAT
105812830 ATATTAT
1 ATATTAT
105812837 ATATTAT
1 ATATTAT
105812844 ATATTAT
1 ATATTAT
105812851 CTTTTTACGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 5 0.17
7 24 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATATTAT
Found at i:105813361 original size:15 final size:15
Alignment explanation
Indices: 105813343--105813372 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
105813333 TTAAATAAAT
105813343 TTTTAGAATTATATA
1 TTTTAGAATTATATA
*
105813358 TTTTAGAATTTTATA
1 TTTTAGAATTATATA
105813373 AAAATTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (15 bp):
TTTTAGAATTATATA
Found at i:105813491 original size:15 final size:14
Alignment explanation
Indices: 105813473--105813518 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
105813463 ATTATCTTAT
105813473 TTTTTATAAATTTTA
1 TTTTTAT-AATTTTA
105813488 TTTTTATAA--TT-
1 TTTTTATAATTTTA
105813499 TTTTTATAATTTATA
1 TTTTTATAATTT-TA
105813514 TTTTT
1 TTTTT
105813519 TTTCTAGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
11 9 0.33
12 2 0.07
13 1 0.04
14 3 0.11
15 12 0.44
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTTATAATTTTA
Found at i:105813513 original size:18 final size:20
Alignment explanation
Indices: 105813489--105813540 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 20
105813479 TAAATTTTAT
105813489 TTTTATAATTTTTTTATA-A
1 TTTTATAATTTTTTTATAGA
* *
105813508 -TTTATATTTTTTTTCTAGA
1 TTTTATAATTTTTTTATAGA
105813527 TTTTATATATTTTT
1 TTTTATA-ATTTTT
105813541 CTAAATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 15 0.56
19 1 0.04
20 6 0.22
21 5 0.19
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTATAATTTTTTTATAGA
Found at i:105813541 original size:19 final size:19
Alignment explanation
Indices: 105813489--105813549 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
105813479 TAAATTTTAT
*
105813489 TTTTATA-ATTTTTTTATAA
1 TTTTATATATTTTTCTA-AA
* *
105813508 -TTTATATTTTTTTTCTAGA
1 TTTTATA-TATTTTTCTAAA
105813527 TTTTATATATTTTTCTAAA
1 TTTTATATATTTTTCTAAA
105813546 TTTT
1 TTTT
105813550 TTATGTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
18 6 0.18
19 15 0.44
20 13 0.38
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTATATATTTTTCTAAA
Found at i:105813550 original size:20 final size:20
Alignment explanation
Indices: 105813487--105813550 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
105813477 TATAAATTTT
*
105813487 ATTTTTATA-ATTTTTTTATA
1 ATTTTTATATATTTTTCTA-A
* * *
105813507 ATTTATAT-TTTTTTTCTAG
1 ATTTTTATATATTTTTCTAA
105813526 A-TTTTATATATTTTTCTAA
1 ATTTTTATATATTTTTCTAA
105813545 ATTTTT
1 ATTTTT
105813551 TATGTATTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 5 0.15
19 11 0.32
20 18 0.53
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.69
Consensus pattern (20 bp):
ATTTTTATATATTTTTCTAA
Found at i:105815906 original size:21 final size:21
Alignment explanation
Indices: 105815882--105815923 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
105815872 CATCACTTAA
*
105815882 TACGTTAGTATAACATAATTT
1 TACGTCAGTATAACATAATTT
*
105815903 TACGTCGGTATAACATAATTT
1 TACGTCAGTATAACATAATTT
105815924 ACAAATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (21 bp):
TACGTCAGTATAACATAATTT
Found at i:105817594 original size:22 final size:22
Alignment explanation
Indices: 105817569--105817612 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
105817559 AAACCACAAC
105817569 ACGAAGGTTTTACAATCTCAAA
1 ACGAAGGTTTTACAATCTCAAA
105817591 ACGAAGGTTTTACAATCTCAAA
1 ACGAAGGTTTTACAATCTCAAA
105817613 TGCGCTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (22 bp):
ACGAAGGTTTTACAATCTCAAA
Found at i:105821013 original size:10 final size:10
Alignment explanation
Indices: 105820998--105821022 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
105820988 AGTAGTTATT
105820998 TTTCTGTTAC
1 TTTCTGTTAC
105821008 TTTCTGTTAC
1 TTTCTGTTAC
105821018 TTTCT
1 TTTCT
105821023 TTCCTTGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.20, G:0.08, T:0.64
Consensus pattern (10 bp):
TTTCTGTTAC
Found at i:105825877 original size:24 final size:25
Alignment explanation
Indices: 105825848--105825905 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
105825838 AATGAAATAG
*
105825848 AAATTATAAAAATATA-GATTATTA
1 AAATTATAAAAATATATGATTATAA
* **
105825872 AAATTATAAAATTATATTTTTATAA
1 AAATTATAAAAATATATGATTATAA
105825897 AAATTATAA
1 AAATTATAA
105825906 TTTAATTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 15 0.52
25 14 0.48
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
AAATTATAAAAATATATGATTATAA
Found at i:105826013 original size:23 final size:25
Alignment explanation
Indices: 105825979--105826035 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
105825969 TATACTTAAA
*
105825979 AAATATATTAAATTTTTTAA-A-TAT
1 AAATATAATAAA-TTTTTAATATTAT
105826003 -AATATAATAAATTTTTAATATTAT
1 AAATATAATAAATTTTTAATATTAT
105826027 AAATATAAT
1 AAATATAAT
105826036 TTATGCTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 7 0.24
23 11 0.38
24 3 0.10
25 8 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
AAATATAATAAATTTTTAATATTAT
Found at i:105826213 original size:12 final size:12
Alignment explanation
Indices: 105826196--105826221 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
105826186 AATTTTTTTT
105826196 ATTTTAGAAATA
1 ATTTTAGAAATA
105826208 ATTTTAGAAATA
1 ATTTTAGAAATA
105826220 AT
1 AT
105826222 AGATATGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (12 bp):
ATTTTAGAAATA
Found at i:105827246 original size:32 final size:32
Alignment explanation
Indices: 105827210--105827276 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
105827200 AGACAAGTTG
105827210 AAACTTTAGGGGTTACAAGCTCTCATGACCTA
1 AAACTTTAGGGGTTACAAGCTCTCATGACCTA
*
105827242 AAACTTTAGGGGTTACAAGCTCTCATGACTTA
1 AAACTTTAGGGGTTACAAGCTCTCATGACCTA
105827274 AAA
1 AAA
105827277 AATATAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28
Consensus pattern (32 bp):
AAACTTTAGGGGTTACAAGCTCTCATGACCTA
Found at i:105827519 original size:29 final size:29
Alignment explanation
Indices: 105827483--105827539 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
105827473 GCTTATATGA
** *
105827483 ATTTTAATATTTTTTTAT-ATTTTTTAAG
1 ATTTTAATACATTTTTATAATATTTTAAG
105827511 ATTTCTAATACATTTTTATAATATTTTAA
1 ATTT-TAATACATTTTTATAATATTTTAA
105827540 ATATGTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.17
29 12 0.50
30 8 0.33
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (29 bp):
ATTTTAATACATTTTTATAATATTTTAAG
Found at i:105827536 original size:11 final size:11
Alignment explanation
Indices: 105827487--105827594 Score: 55
Period size: 11 Copynumber: 9.7 Consensus size: 11
105827477 ATATGAATTT
105827487 TAATATTTTT-
1 TAATATTTTTA
*
105827497 TTATATTTTT-
1 TAATATTTTTA
* *
105827507 TAAGATTTCTA
1 TAATATTTTTA
*
105827518 -ATACATTTTTA
1 TA-ATATTTTTA
105827529 TAATA-TTTTA
1 TAATATTTTTA
105827539 -AATATGTTTTA
1 TAATAT-TTTTA
*
105827550 TTAATTTTTTTAA
1 -TAATATTTTT-A
* *
105827563 AAATTATAATTTA
1 TAA-TAT-TTTTA
*
105827576 TTATATTTTTA
1 TAATATTTTTA
105827587 TAATATTT
1 TAATATTT
105827595 ATAAGTTTTT
Statistics
Matches: 73, Mismatches: 15, Indels: 19
0.68 0.14 0.18
Matches are distributed among these distances:
9 4 0.05
10 22 0.30
11 25 0.34
12 10 0.14
13 9 0.12
14 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (11 bp):
TAATATTTTTA
Found at i:105827580 original size:10 final size:9
Alignment explanation
Indices: 105827566--105827608 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
105827556 TTTTTAAAAA
105827566 TTATAATTT
1 TTATAATTT
105827575 ATTAT-ATTT
1 -TTATAATTT
*
105827584 TTATAATAT
1 TTATAATTT
105827593 TTATAAGTTT
1 TTATAA-TTT
105827603 TTATAA
1 TTATAA
105827609 GTTGATGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 4 0.14
9 13 0.45
10 12 0.41
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (9 bp):
TTATAATTT
Found at i:105827596 original size:27 final size:28
Alignment explanation
Indices: 105827546--105827607 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
105827536 TTAAATATGT
*
105827546 TTTATTA-ATTTTTTTAAAAATTATAA-
1 TTTATTATATTTTTATAAAAATTATAAG
* *
105827572 TTTATTATATTTTTATAATATTTATAAG
1 TTTATTATATTTTTATAAAAATTATAAG
105827600 TTT-TTATA
1 TTTATTATA
105827608 AGTTGATGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.23
27 21 0.68
28 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (28 bp):
TTTATTATATTTTTATAAAAATTATAAG
Found at i:105829977 original size:137 final size:138
Alignment explanation
Indices: 105829725--105830019 Score: 423
Period size: 137 Copynumber: 2.1 Consensus size: 138
105829715 ATAATGATGA
* * * *
105829725 TAATGATAATAATACTAGCAATAATAATGAAATACAAAAAAAACAAATATAATATAATAATAATG
1 TAATAATAATAATAATAGCAATAATAATGAAATAC-AAAAAAACAAATATAATATAATAAAAATA
* * *
105829790 TTAAAATAAAGTAATTAAAAATAGTACTATATATAAATATATATATATATACGTATATAAT-AAA
65 TTAAAATAAAGTAATTAAAAATAATACTATATATAAATATATATACATATACATATATAATAAAA
105829854 AATATACAC
130 AATATACAC
* * * *
105829863 TAATAATAATAATAATAGTAATAATATTGAAATAC-AAAAAGCAAATGTAATATAATAAAAATAT
1 TAATAATAATAATAATAGCAATAATAATGAAATACAAAAAAACAAATATAATATAATAAAAATAT
*
105829927 TAAAATAAAGTAATTAAAAAATAATACTATGTATAAATATATATACATATACATATATAATAAAA
66 TAAAATAAAGTAATT-AAAAATAATACTATATATAAATATATATACATATACATATATAAT-AAA
105829992 AAATATACAC
129 AAATATACAC
*
105830002 TAATATGTAATAATAATA
1 TAATA-ATAATAATAATA
105830020 ATAGTGATTA
Statistics
Matches: 140, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
136 40 0.29
137 41 0.29
138 31 0.22
139 17 0.12
140 11 0.08
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (138 bp):
TAATAATAATAATAATAGCAATAATAATGAAATACAAAAAAACAAATATAATATAATAAAAATAT
TAAAATAAAGTAATTAAAAATAATACTATATATAAATATATATACATATACATATATAATAAAAA
ATATACAC
Found at i:105833340 original size:16 final size:15
Alignment explanation
Indices: 105833307--105833340 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
105833297 AATCATTATG
105833307 TTTTAATCTGATCAT
1 TTTTAATCTGATCAT
105833322 TTTTAATCTTGAT-AT
1 TTTTAATC-TGATCAT
105833337 TTTT
1 TTTT
105833341 CAAATTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.24, C:0.09, G:0.06, T:0.62
Consensus pattern (15 bp):
TTTTAATCTGATCAT
Done.