Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 326 of 333
Found at i:105836659 original size:3 final size:3
Alignment explanation
Indices: 105836651--105836690 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
105836641 AATGAATCGA
105836651 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
105836691 GATTTAACAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:105840059 original size:21 final size:21
Alignment explanation
Indices: 105840031--105840076 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
105840021 ACAATAGTAG
105840031 TCAA-ATTTGTTTGGCTAAAT
1 TCAATATTTGTTTGGCTAAAT
105840051 TCAATATTTGTTTGGCTAAAT
1 TCAATATTTGTTTGGCTAAAT
105840072 TCAAT
1 TCAAT
105840077 TACTAGTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (21 bp):
TCAATATTTGTTTGGCTAAAT
Found at i:105843117 original size:39 final size:34
Alignment explanation
Indices: 105843038--105843116 Score: 149
Period size: 34 Copynumber: 2.3 Consensus size: 34
105843028 TGAGAAACAA
105843038 AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
1 AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
*
105843072 AAATGTCATGTTTTTATTTTTTTTCTTGTTGAAC
1 AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
105843106 AAATGTCATGT
1 AAATGTCATGT
105843117 CTTTCTTTGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.54
Consensus pattern (34 bp):
AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
Found at i:105845098 original size:37 final size:37
Alignment explanation
Indices: 105845064--105845145 Score: 92
Period size: 37 Copynumber: 2.2 Consensus size: 37
105845054 AGGTTTTAGA
*
105845064 GACTAAATCGTAAAAATTATAAAATTTGAATTTTAAG
1 GACTAAATCGTAAAAACTATAAAATTTGAATTTTAAG
** * * ** *
105845101 GACTATTTTGTAAAAACTGTAAAATTTGAGGTATAAG
1 GACTAAATCGTAAAAACTATAAAATTTGAATTTTAAG
105845138 GACTAAAT
1 GACTAAAT
105845146 ATTGACATAA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (37 bp):
GACTAAATCGTAAAAACTATAAAATTTGAATTTTAAG
Found at i:105849670 original size:25 final size:24
Alignment explanation
Indices: 105849629--105849712 Score: 64
Period size: 25 Copynumber: 3.4 Consensus size: 24
105849619 GCTAAGTAAT
*
105849629 GGGAAGCTCATA-CGAGCTGTATATC
1 GGGAAGCTCA-AGAGAGCT-TATATC
*
105849654 GGGAAGCTTAAGAGAGCCATTA-ATC
1 GGGAAGCTCAAGAGAG-C-TTATATC
* **
105849679 GGGAAGCTCATGAGAGCCAAATATC
1 GGGAAGCTCAAGAGAG-CTTATATC
105849704 GGGAAGCTC
1 GGGAAGCTC
105849713 GTGAGAGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
24 2 0.04
25 43 0.88
26 3 0.06
27 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.30, T:0.19
Consensus pattern (24 bp):
GGGAAGCTCAAGAGAGCTTATATC
Found at i:105849717 original size:25 final size:25
Alignment explanation
Indices: 105849649--105849722 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 25
105849639 TACGAGCTGT
* *
105849649 ATATCGGGAAGCTTAAGAGAGCC-A
1 ATATCGGGAAGCTCATGAGAGCCAA
*
105849673 TTAATCGGGAAGCTCATGAGAGCCAA
1 AT-ATCGGGAAGCTCATGAGAGCCAA
*
105849699 ATATCGGGAAGCTCGTGAGAGCCA
1 ATATCGGGAAGCTCATGAGAGCCA
105849723 TGGTGTGTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.02
25 40 0.93
26 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.30, T:0.18
Consensus pattern (25 bp):
ATATCGGGAAGCTCATGAGAGCCAA
Found at i:105851838 original size:25 final size:23
Alignment explanation
Indices: 105851786--105851839 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 23
105851776 TATAAATAGT
105851786 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
105851809 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
105851834 AATAGT
1 AATAGT
105851840 AAAAATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 11 0.44
24 2 0.08
25 12 0.48
ACGTcount: A:0.44, C:0.04, G:0.15, T:0.37
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:105852250 original size:9 final size:9
Alignment explanation
Indices: 105852216--105852249 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
105852206 TATAATAAAT
105852216 AATAATAAC
1 AATAATAAC
105852225 AATAATAAC
1 AATAATAAC
*
105852234 AATAATAGC
1 AATAATAAC
105852243 AATAATA
1 AATAATA
105852250 GTAAAAATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.65, C:0.09, G:0.03, T:0.24
Consensus pattern (9 bp):
AATAATAAC
Found at i:105852435 original size:3 final size:3
Alignment explanation
Indices: 105852429--105852681 Score: 102
Period size: 3 Copynumber: 82.7 Consensus size: 3
105852419 ATAGTAAATG
* * *
105852429 TAA TAA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG TACA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A
* * *
105852476 TAA CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA T-A TAGA -AA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* *
105852521 TTCAA -AA -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A
1 -T-AA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
105852563 TACA CTAA TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAA TAA TAA TAA
1 TA-A -TAA TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* * * *
105852611 TAA TAA GT-A TAG T-A TAAA TAA TATG TACA TAA CAG TAA TAA TAA TAA
1 TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A TAA TAA TAA TAA TAA TAA
105852658 GTAA TAA TAA TAA TAA TAA TAA TA
1 -TAA TAA TAA TAA TAA TAA TAA TA
105852682 TAGAAATTCA
Statistics
Matches: 188, Mismatches: 32, Indels: 60
0.67 0.11 0.21
Matches are distributed among these distances:
2 21 0.11
3 134 0.71
4 29 0.15
5 4 0.02
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:105852504 original size:19 final size:19
Alignment explanation
Indices: 105852476--105852512 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
105852466 AATATGTACA
*
105852476 TAACAGTAATAATAATAAG
1 TAACAATAATAATAATAAG
105852495 TAACAATAATAATAATAA
1 TAACAATAATAATAATAA
105852513 TATAGAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (19 bp):
TAACAATAATAATAATAAG
Found at i:105852624 original size:164 final size:168
Alignment explanation
Indices: 105852390--105852730 Score: 591
Period size: 167 Copynumber: 2.0 Consensus size: 168
105852380 ATATATAATA
*
105852390 AAAATATACACTAATATTTATAAATAATAATAGTAAATGTAATAATAATAATAATAATATTAAGT
1 AAAATATACACTAATATTTATAAATAATAATAGTAAA-GTAATAATAATAATAATAATAATAAGT
105852455 ATAGTATAAATAATATGTACATAACAGTAATAATAATAAG-TAACAATAATAATAATAATATAGA
65 ATAGTATAAATAATATGTACATAACAGTAATAATAATAAGATAACAATAATAATAATAATATAGA
* *
105852519 AATTC-AAAAAAGTAAACATAATATAATGATATTAAAAT
130 AATTCAAAAAAACTAAACATAATATAATAATATTAAAAT
105852557 AAAATATACACTAATATTTATAAATAATAATAGTAAA-T-ATAATAATAATAATAATAATAAGTA
1 AAAATATACACTAATATTTATAAATAATAATAGTAAAGTAATAATAATAATAATAATAATAAGTA
*
105852620 TAGTATAAATAATATGTACATAACAGTAATAATAATAAGTAATAATAATAATAATAATAATATAG
66 TAGTATAAATAATATGTACATAACAGTAATAATAATAAG--ATAACAATAATAATAATAATATAG
105852685 AAATTCAAAAAAACTAAACATAATATAATAATATTAAAAT
129 AAATTCAAAAAAACTAAACATAATATAATAATATTAAAAT
105852725 AAAATA
1 AAAATA
105852731 ATTTAAAAAA
Statistics
Matches: 166, Mismatches: 4, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
164 63 0.38
165 1 0.01
167 65 0.39
168 37 0.22
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (168 bp):
AAAATATACACTAATATTTATAAATAATAATAGTAAAGTAATAATAATAATAATAATAATAAGTA
TAGTATAAATAATATGTACATAACAGTAATAATAATAAGATAACAATAATAATAATAATATAGAA
ATTCAAAAAAACTAAACATAATATAATAATATTAAAAT
Found at i:105852647 original size:23 final size:22
Alignment explanation
Indices: 105852602--105852679 Score: 72
Period size: 22 Copynumber: 3.5 Consensus size: 22
105852592 AATATAATAA
*
105852602 TAATAATAATAA-TAAGT-ATAG
1 TAATAATAATAAGTAA-TAACAG
*
105852623 T-ATAAATAATATGTACATAACAG
1 TAAT-AATAATAAGTA-ATAACAG
* *
105852646 TAATAATAATAAGTAATAATAA
1 TAATAATAATAAGTAATAACAG
105852668 TAATAATAATAA
1 TAATAATAATAA
105852680 TATAGAAATT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
20 2 0.04
21 8 0.17
22 20 0.43
23 15 0.32
24 2 0.04
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (22 bp):
TAATAATAATAAGTAATAACAG
Found at i:105852739 original size:16 final size:16
Alignment explanation
Indices: 105852706--105852738 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
105852696 AACTAAACAT
*
105852706 AATATAATAATATTAA
1 AATAAAATAATATTAA
105852722 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
105852737 AA
1 AA
105852739 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:105859731 original size:29 final size:30
Alignment explanation
Indices: 105859672--105859729 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
105859662 TCCGAGCCTT
*
105859672 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
105859702 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
105859730 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:105859959 original size:13 final size:13
Alignment explanation
Indices: 105859941--105859972 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
105859931 TTTCCAGCAA
105859941 TTATGAATTTATT
1 TTATGAATTTATT
105859954 TTATGAATTTATT
1 TTATGAATTTATT
*
105859967 TGATGA
1 TTATGA
105859973 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:105860181 original size:50 final size:50
Alignment explanation
Indices: 105860067--105860308 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
105860057 ATTTGGGTAA
* * *
105860067 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
105860123 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
105860173 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
105860223 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
105860273 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
105860309 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.19
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:105860258 original size:100 final size:103
Alignment explanation
Indices: 105860067--105860315 Score: 362
Period size: 100 Copynumber: 2.4 Consensus size: 103
105860057 ATTTGGGTAA
105860067 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCC---AGATCATGAGAGGTCCC
* *
105860132 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
105860173 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCCAGATCATGAGAGGTCCCCTA
105860235 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
105860273 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
105860316 TGTTATTATC
Statistics
Matches: 133, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:105865049 original size:52 final size:48
Alignment explanation
Indices: 105865030--105865232 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
105865020 TGACAAGTGG
* *
105865030 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
105865076 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
105865128 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
105865174 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
105865220 AAAGTGATAAGTG
1 AAAGTGATAAGTG
105865233 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:105865084 original size:98 final size:98
Alignment explanation
Indices: 105864964--105865232 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
105864954 TTTGAGTACT
*
105864964 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
105865029 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
105865062 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
105865127 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
105865160 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
105865225 GATAAGTG
65 GAAAAGTG
105865233 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:105865240 original size:37 final size:37
Alignment explanation
Indices: 105865196--105865304 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
105865186 GATAGCTTTA
105865196 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
105865233 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
105865270 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
105865305 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:105870502 original size:13 final size:13
Alignment explanation
Indices: 105870484--105870515 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
105870474 TTTCCAGCAA
105870484 TTATGAATTTATT
1 TTATGAATTTATT
105870497 TTATGAATTTATT
1 TTATGAATTTATT
*
105870510 TGATGA
1 TTATGA
105870516 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:105870723 original size:50 final size:50
Alignment explanation
Indices: 105870610--105870851 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
105870600 ATTTGGGTAA
* * *
105870610 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
105870666 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
105870716 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
105870766 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
105870816 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
105870852 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:105870799 original size:100 final size:103
Alignment explanation
Indices: 105870610--105870859 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
105870600 ATTTGGGTAA
105870610 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
105870675 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
105870716 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
105870778 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
105870816 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
105870860 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:105873330 original size:22 final size:23
Alignment explanation
Indices: 105873292--105873338 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
105873282 TGTTCGAATG
105873292 CTTTCTGTTCTCTTTTCTCTATT
1 CTTTCTGTTCTCTTTTCTCTATT
* *
105873315 CTTTTTGTT-TCTTTTCTTTATT
1 CTTTCTGTTCTCTTTTCTCTATT
105873337 CT
1 CT
105873339 ATTTCTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.70
Consensus pattern (23 bp):
CTTTCTGTTCTCTTTTCTCTATT
Found at i:105877275 original size:80 final size:80
Alignment explanation
Indices: 105877142--105877490 Score: 470
Period size: 80 Copynumber: 4.3 Consensus size: 80
105877132 TAATCTTTTT
* ** *
105877142 ACTCTATCAAGTAAAACCTAATTATCATACACACCT-TCCTTTGCTGCCAACACTTAACACCAAT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCT-CTCCGCCGCCAACACTTAACACCAAT
105877206 CCTAAAACTCCTTAGA-
65 CCTAAAACTCCTTA-AC
* *
105877222 ACTCTATCAAGTAAAACCTAAATATCATGCACACCTCTATCCGCCGCCAACACTTAACACCAATC
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATC
* * *
105877287 CTTAAGCTCCTTAAT
66 CTAAAACTCCTTAAC
* * * *
105877302 ATTCTATCAAGTAAAACCTAAATATTATACACACCTCTCTCCACCGCCAACACTTAATACCAATC
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATC
*
105877367 CTAAAACTCATTAAC
66 CTAAAACTCCTTAAC
105877382 ACTCTATCAAGTAAAACCTAAATATCATACACACCT-TCCTCCGCCGCCAACACTTAACACCAAT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCT-CTCCGCCGCCAACACTTAACACCAAT
* *
105877446 TCTAAAACTCTTTAAC
65 CCTAAAACTCCTTAAC
* * *
105877462 ATTTTATCAAGTAAAAACTAAATACTCAT
1 ACTCTATCAAGTAAAACCTAAATA-TCAT
105877491 TAATACTCTT
Statistics
Matches: 238, Mismatches: 27, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
79 2 0.01
80 231 0.97
81 5 0.02
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.27
Consensus pattern (80 bp):
ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATC
CTAAAACTCCTTAAC
Found at i:105877597 original size:114 final size:113
Alignment explanation
Indices: 105877366--105877603 Score: 336
Period size: 114 Copynumber: 2.1 Consensus size: 113
105877356 TAATACCAAT
* *
105877366 CCTAAA-ACTCATTAACACTCTATCAAGTAAAACCTAAATATCATACACACCTTCCTCCGCCGCC
1 CCTAAATACTCATTAACACTCTATAAAGTAAAACCTAAAGATCATACACACCTTCCTCCGCCGCC
* * *
105877430 AACACTTAACACCAATTCTAAAACTCTTTAACATTTTATCAAGTAAAA
66 AACACTTAAAACCAATTCTAAAACTCATTAACACTTTATCAAGTAAAA
* * * **
105877478 ACTAAATACTCATTAATACTCTTATAAAGTAAAACCTAAAGATCATTCACATTTTCCTCCGCCGC
1 CCTAAATACTCATTAACACTC-TATAAAGTAAAACCTAAAGATCATACACACCTTCCTCCGCCGC
* * *
105877543 CAACACTTAAAACCAGTTCTAAAACTCATTAATACTTTATCAAGTGAAA
65 CAACACTTAAAACCAATTCTAAAACTCATTAACACTTTATCAAGTAAAA
105877592 CCTAAATA-TCAT
1 CCTAAATACTCAT
105877604 GTGAACCTCC
Statistics
Matches: 110, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
112 5 0.05
113 17 0.15
114 88 0.80
ACGTcount: A:0.40, C:0.26, G:0.05, T:0.29
Consensus pattern (113 bp):
CCTAAATACTCATTAACACTCTATAAAGTAAAACCTAAAGATCATACACACCTTCCTCCGCCGCC
AACACTTAAAACCAATTCTAAAACTCATTAACACTTTATCAAGTAAAA
Found at i:105877603 original size:80 final size:77
Alignment explanation
Indices: 105877479--105877765 Score: 295
Period size: 80 Copynumber: 3.6 Consensus size: 77
105877469 CAAGTAAAAA
* * * *
105877479 CTAAATACTCATTAATACTCTTATAAAGTAAAACCTAAAGATCATTCACATTTTCCTCCGCCGCC
1 CTAAA-ACTCATTAATACTC-TATCAAGTAAAACCTAAATATCATTCA-A-CTTCCTCTGCCGCC
*
105877544 AACACTTAAAACCAGTT
62 AACACTTAACACCA-TT
* * * * *
105877561 CTAAAACTCATTAATACTTTATCAAGTGAAACCTAAATATCATGTGAACCTCCTTTTGCCGCCAA
1 CTAAAACTCATTAATACTCTATCAAGTAAAACCTAAATATCAT-TCAACTTCC-TCTGCCGCCAA
*
105877626 CACTTAACACCAAT
64 CACTTAACACCATT
* * * * *
105877640 CTTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATCATACATACCTCCCTCTGCCACCA
1 C-TAAAACTCATTAATACTCTATCAAGTAAAACCTAAATATCATTCA-A-CTTCCTCTGCCGCCA
*
105877705 ACACTTAACACCAATA
63 ACACTTAACACC-ATT
* *
105877721 CTAAAACTCCTTAAAACTCTATCAAGTAAAACCTAAATACTCATT
1 CTAAAACTCATTAATACTCTATCAAGTAAAACCTAAATA-TCATT
105877766 GATACTCTAT
Statistics
Matches: 173, Mismatches: 25, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
79 6 0.03
80 138 0.80
81 24 0.14
82 5 0.03
ACGTcount: A:0.39, C:0.28, G:0.05, T:0.28
Consensus pattern (77 bp):
CTAAAACTCATTAATACTCTATCAAGTAAAACCTAAATATCATTCAACTTCCTCTGCCGCCAACA
CTTAACACCATT
Found at i:105877639 original size:194 final size:192
Alignment explanation
Indices: 105877297--105877683 Score: 494
Period size: 194 Copynumber: 2.0 Consensus size: 192
105877287 CTTAAGCTCC
* * * * *
105877297 TTAATATTCTATCAAGTAAAACCTAAATATTATACACACCTCTCTCCACCGCCAACACTTAATAC
1 TTAATACTCTATAAAGTAAAACCTAAAGATCATACACACCTCTCTCCACCGCCAACACTTAAAAC
105877362 CAATCCTAAAACTCATTAACACTCTATCAAGTAAAACCTAAATATCATACACACCTTCCTCCGCC
66 CAATCCTAAAACTCATTAACACTCTATCAAGTAAAACCTAAATATCATACACACCTTCCTCCGCC
* * *
105877427 GCCAACACTTAACACCAAT-TCTAAAACTCTTTAACATTTTATCAAGTAAAAACTAAATACTCA
131 GCCAACACTTAACACCAATCT-TAAAACTCCTTAACACTCTATCAAGTAAAAACTAAATA-TCA
* * * *
105877490 TTAATACTCTTATAAAGTAAAACCTAAAGATCATTCACA-TTTTCCTCCGCCGCCAACACTTAAA
1 TTAATACTC-TATAAAGTAAAACCTAAAGATCATACACACCTCT-CTCCACCGCCAACACTTAAA
* * * * * ** *
105877554 ACCAGTTCTAAAACTCATTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACC-TCCTTT
64 ACCAATCCTAAAACTCATTAACACTCTATCAAGTAAAACCTAAATATCAT-ACACACCTTCC-TC
* *
105877617 TGCCGCCAACACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATC
127 CGCCGCCAACACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAAACTAAATATC
105877682 A
192 A
105877683 T
1 T
105877684 ACATACCTCC
Statistics
Matches: 167, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
193 17 0.10
194 148 0.89
195 2 0.01
ACGTcount: A:0.39, C:0.28, G:0.05, T:0.28
Consensus pattern (192 bp):
TTAATACTCTATAAAGTAAAACCTAAAGATCATACACACCTCTCTCCACCGCCAACACTTAAAAC
CAATCCTAAAACTCATTAACACTCTATCAAGTAAAACCTAAATATCATACACACCTTCCTCCGCC
GCCAACACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAAACTAAATATCA
Found at i:105877719 original size:274 final size:272
Alignment explanation
Indices: 105877222--105878147 Score: 1068
Period size: 274 Copynumber: 3.3 Consensus size: 272
105877212 ACTCCTTAGA
* * * * *
105877222 ACTCTATCAAGTAAAACCTAAATATCATGCACACCTCTATCCGCCGCCAACACTTAACACCAATC
1 ACTCTATCAAGTAAAACCTAAAGATCATTCACACTTC-CTCCGCCGCCAACACTTAAAACCAATC
* * * * ** **
105877287 CTTAAGCTCCTTAATA-TTCTATCAAGTAAAACCTAAATATTAT-ACACACCT-CTCTCCACCGC
65 CTAAAACTCCTTAATACTT-TATCAAGTGAAACCTAAATATCATGTGA-ACCTCCT-TCTGCCGC
* * *
105877349 CAACACTTAATACCAATCCTAAAACTCATTAACACTCTATCAAGTAAAACCTAAATATCATACAC
127 CAACACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATCATACAC
* * * * * * *
105877414 ACCTTCCTCCGCCGCCAACACTTAACACCAATTCTAAAACTCTTTAACATTTTATCAAGTAAAAA
192 ACCTCCCTCCGCCACCAACACTTAACACCAATACTAAAACTCCTTAAAACTCTATCAAGTAAAAA
105877479 CTAAATACTCATTAAT
257 CTAAATACTCATTAAT
* * *
105877495 ACTCTTATAAAGTAAAACCTAAAGATCATTCACATTTTCCTCCGCCGCCAACACTTAAAACCAGT
1 ACTC-TATCAAGTAAAACCTAAAGATCATTCACA-CTTCCTCCGCCGCCAACACTTAAAACCAAT
* * *
105877560 TCTAAAACTCATTAATACTTTATCAAGTGAAACCTAAATATCATGTGAACCTCCTTTTGCCGCCA
64 CCTAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGAACCTCCTTCTGCCGCCA
*
105877625 ACACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATCATACATAC
129 ACACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATCATACACAC
* *
105877690 CTCCCTCTGCCACCAACACTTAACACCAATACTAAAACTCCTTAAAACTCTATCAAGTAAAACCT
194 CTCCCTCCGCCACCAACACTTAACACCAATACTAAAACTCCTTAAAACTCTATCAAGTAAAAACT
*
105877755 AAATACTCATTGAT
259 AAATACTCATTAAT
*
105877769 ACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCAACACTTAAAACCAATC
1 ACTCTATCAAGTAAAACCTAAAGATCATTCACA-CTTCCTCCGCCGCCAACACTTAAAACCAATC
* * *
105877834 CTAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGAACCTCCCTCTGTCGCCAT
65 CTAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGAACCTCCTTCTGCCGCCAA
105877899 CACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAATACTCATTGATACTCTATCA
130 CACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAA-AC-C--T-A-A----AT--
* * *
105877964 AGTAAAACCTAAAGATCATTCACACCTCTCTCCGCCGCCAACACTTATCACCAATACTAAAACT-
183 A-T-----C-----AT-A--CACACCTCCCTCCGCCACCAACACTTAACACCAATACTAAAACTC
* * * *
105878028 CTTAACACTCTATCAAGTAAAACCTAAATACTCCTTGAT
234 CTTAAAACTCTATCAAGTAAAAACTAAATACTCATTAAT
* * * *
105878067 ACTCTATCAAGTAAAACCTAAAGATCACTCACACCTCCCCCTGTCGCCAACACTTAAAACCAATC
1 ACTCTATCAAGTAAAACCTAAAGATCATTCACACTTCCTCC-GCCGCCAACACTTAAAACCAATC
* *
105878132 CTTAAATTCCTTAATA
65 CTAAAACTCCTTAATA
105878148 ACAATAAGAC
Statistics
Matches: 563, Mismatches: 58, Indels: 39
0.85 0.09 0.06
Matches are distributed among these distances:
273 164 0.29
274 231 0.41
275 8 0.01
277 1 0.00
278 1 0.00
279 1 0.00
283 2 0.00
285 1 0.00
286 1 0.00
291 1 0.00
296 2 0.00
297 6 0.01
298 105 0.19
299 39 0.07
ACGTcount: A:0.38, C:0.30, G:0.05, T:0.27
Consensus pattern (272 bp):
ACTCTATCAAGTAAAACCTAAAGATCATTCACACTTCCTCCGCCGCCAACACTTAAAACCAATCC
TAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGAACCTCCTTCTGCCGCCAAC
ACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATCATACACACCT
CCCTCCGCCACCAACACTTAACACCAATACTAAAACTCCTTAAAACTCTATCAAGTAAAAACTAA
ATACTCATTAAT
Found at i:105877833 original size:193 final size:186
Alignment explanation
Indices: 105877561--105878057 Score: 664
Period size: 193 Copynumber: 2.6 Consensus size: 186
105877551 AAAACCAGTT
* * * * * * **
105877561 CTAAA-ACTCATTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACCTCCTTTTGCCGCC
1 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCAT-TCACACCTCCCTCCGCCGCC
105877624 AACACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATCAT-ACAT
65 AACACTTAACACCAATC-TAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATCATGACA-
105877688 ACCTCCCTCTGCCACCAACACTTAACACCAATAC-TAAAACTCCTTAAAACTCTATCAAG
128 ACCTCCCTCTGCCACCAACACTTAACACCAAT-CTTAAAACTCCTTAAAACTCTATCAAG
105877747 TAAAACCTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCG
1 ------CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCG
* * * *
105877812 CCGCCAACACTTAAAACCAATCCTAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCAT
60 CCGCCAACACTTAACACCAAT-CTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATCAT
** * * * *
105877877 GTGAACCTCCCTCTGTCGCCATCACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAG
124 GACAACCTCCCTCTGCCACCAACACTTAACACCAATCTTAAAACTCCTTAAAACTCTATCAAG
*
105877940 -TAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCTCTCCGCCGCCA
1 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
*
105878004 ACACTTATCACCAATACTAAAACT-CTTAACACTCTATCAAGTAAAACCTAAATA
66 ACACTTAACACCAAT-CTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATA
105878058 CTCCTTGATA
Statistics
Matches: 275, Mismatches: 25, Indels: 17
0.87 0.08 0.05
Matches are distributed among these distances:
185 27 0.10
186 84 0.31
192 8 0.03
193 154 0.56
194 2 0.01
ACGTcount: A:0.38, C:0.30, G:0.05, T:0.27
Consensus pattern (186 bp):
CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
ACACTTAACACCAATCTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATCATGACAACC
TCCCTCTGCCACCAACACTTAACACCAATCTTAAAACTCCTTAAAACTCTATCAAG
Found at i:105877857 original size:113 final size:112
Alignment explanation
Indices: 105877656--105877876 Score: 343
Period size: 113 Copynumber: 2.0 Consensus size: 112
105877646 ACTCCTTAAC
* * * *
105877656 ACTCTATCAAGTAAAACCTAAATATCATACATACCTCCCTCTGCCACCAACACTTAACACCAATA
1 ACTCTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCCGCCACCAACACTTAAAACCAATA
105877721 CTAAAACTCCTTAAAACTCTATCAAGTAAAACCTAAATACTCATTGAT
66 CTAAAACTCCTTAAAACTCTATCAAGTAAAACCTAAATA-TCATTGAT
* * *
105877769 ACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCAACACTTAAAACCAATC
1 ACTCTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCCGCCACCAACACTTAAAACCAATA
* * *
105877834 CTAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCAT
66 CTAAAACTCCTTAAAACTCTATCAAGTAAAACCTAAATATCAT
105877877 GTGAACCTCC
Statistics
Matches: 98, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
112 4 0.04
113 94 0.96
ACGTcount: A:0.40, C:0.30, G:0.05, T:0.25
Consensus pattern (112 bp):
ACTCTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCCGCCACCAACACTTAAAACCAATA
CTAAAACTCCTTAAAACTCTATCAAGTAAAACCTAAATATCATTGAT
Found at i:105877886 original size:80 final size:80
Alignment explanation
Indices: 105877752--105877943 Score: 251
Period size: 80 Copynumber: 2.4 Consensus size: 80
105877742 TCAAGTAAAA
* *
105877752 CCTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCC
1 CCTAAA-ACTCCTTAATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCC
105877817 AACACTTAAAACCAAT
65 AACACTTAAAACCAAT
* * * * * *
105877833 CCTAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACCTCCCTCTGTCGCC
1 CCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAAGATCAT-TCACACCTCCCTCCGCCGCC
* *
105877897 ATCACTTAACACCAAT
65 AACACTTAAAACCAAT
* *
105877913 CTTAAAACTCCTTAACACTCTATCAAGTAAA
1 CCTAAAACTCCTTAATACTCTATCAAGTAAA
105877944 TACTCATTGA
Statistics
Matches: 96, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 88 0.92
81 8 0.08
ACGTcount: A:0.36, C:0.31, G:0.06, T:0.27
Consensus pattern (80 bp):
CCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
ACACTTAAAACCAAT
Found at i:105877948 original size:26 final size:25
Alignment explanation
Indices: 105877915--105877971 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
105877905 ACACCAATCT
*
105877915 TAAAACTCCTTAACACTCTATCAAG
1 TAAAACTCATTAACACTCTATCAAG
* *
105877940 TAAATACTCATTGATACTCTATCAAG
1 TAAA-ACTCATTAACACTCTATCAAG
105877966 TAAAAC
1 TAAAAC
105877972 CTAAAGATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 6 0.21
26 22 0.79
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (25 bp):
TAAAACTCATTAACACTCTATCAAG
Found at i:105877972 original size:106 final size:108
Alignment explanation
Indices: 105877847--105878145 Score: 358
Period size: 112 Copynumber: 2.8 Consensus size: 108
105877837 AAACTCCTTA
* * * * *
105877847 ATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACCTCCCTCTGTCGCCATCACTTAACACCA
1 ATACTCTATCAAGTAAAACCTAAAGATCAT-TCACACCTCCCTCTGTCGCCAACACTTAACACCA
105877911 AT-CTTAAAACTCCTTAACACTCTATCAAG-TAAATACTCATTG
65 ATACTTAAAACTCCTTAACACTCTATCAAGATAAATACTCATTG
* * * *
105877953 ATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCTCTCCGCCGCCAACACTTATCACCAA
1 ATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCTGTCGCCAACACTTAACACCAA
*
105878018 TAC-TAAAACT-CTTAACACTCTATCAAGTAAAACCTAAATACTCCTTG
66 TACTTAAAACTCCTTAACACTCTATCAAG----A--TAAATACTCATTG
* * *
105878065 ATACTCTATCAAGTAAAACCTAAAGATCACTCACACCTCCCCCTGTCGCCAACACTTAAAACCAA
1 ATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCTGTCGCCAACACTTAACACCAA
* *
105878130 TCCTT-AAATTCCTTAA
66 TACTTAAAACTCCTTAA
105878146 TAACAATAAG
Statistics
Matches: 163, Mismatches: 19, Indels: 15
0.83 0.10 0.08
Matches are distributed among these distances:
105 19 0.12
106 61 0.37
107 1 0.01
112 76 0.47
113 6 0.04
ACGTcount: A:0.36, C:0.30, G:0.06, T:0.27
Consensus pattern (108 bp):
ATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCTGTCGCCAACACTTAACACCAA
TACTTAAAACTCCTTAACACTCTATCAAGATAAATACTCATTG
Found at i:105881242 original size:3 final size:3
Alignment explanation
Indices: 105881234--105881263 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
105881224 TCTGGCCGAA
105881234 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
105881264 GAAAATTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:105882392 original size:18 final size:19
Alignment explanation
Indices: 105882356--105882393 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
105882346 CCTCACGTAA
105882356 TTAAACTCTCCTAAGACTT
1 TTAAACTCTCCTAAGACTT
*
105882375 TTAAACTCT-CTTAGACTT
1 TTAAACTCTCCTAAGACTT
105882393 T
1 T
105882394 ACCTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (19 bp):
TTAAACTCTCCTAAGACTT
Found at i:105884260 original size:21 final size:22
Alignment explanation
Indices: 105884231--105884274 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
105884221 CTTTTACGTT
*
105884231 AAAAGAGATGGAGAAG-AGAAG
1 AAAAGAGATGAAGAAGCAGAAG
*
105884252 AAAATAGATGAAGAAGCAGAAG
1 AAAAGAGATGAAGAAGCAGAAG
105884274 A
1 A
105884275 GAATGAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.59, C:0.02, G:0.32, T:0.07
Consensus pattern (22 bp):
AAAAGAGATGAAGAAGCAGAAG
Found at i:105903592 original size:16 final size:17
Alignment explanation
Indices: 105903561--105903593 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
105903551 TAATACTTTT
*
105903561 AAAAATATTTACTAAAA
1 AAAAAAATTTACTAAAA
105903578 AAAAAAATTTA-TAAAA
1 AAAAAAATTTACTAAAA
105903594 TAATATCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAAAATTTACTAAAA
Found at i:105915199 original size:18 final size:19
Alignment explanation
Indices: 105915171--105915210 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
105915161 AGGACACTCT
*
105915171 CTACTAAATCAAATAACTA
1 CTACTAAATCAAATAACAA
105915190 CTAC-AAATCAAATAACAA
1 CTACTAAATCAAATAACAA
105915208 CTA
1 CTA
105915211 TTTGACTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (19 bp):
CTACTAAATCAAATAACAA
Found at i:105916292 original size:21 final size:21
Alignment explanation
Indices: 105916268--105916316 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
105916258 TAATTATCAA
*
105916268 TAATAATTGAAAA-AAATTCTT
1 TAATAATT-AAAAGAAATTATT
* *
105916289 TAATTAGTAAAAGAAATTATT
1 TAATAATTAAAAGAAATTATT
105916310 TAATAAT
1 TAATAAT
105916317 ACAATTACTA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (21 bp):
TAATAATTAAAAGAAATTATT
Found at i:105922026 original size:29 final size:30
Alignment explanation
Indices: 105921970--105922042 Score: 75
Period size: 29 Copynumber: 2.5 Consensus size: 30
105921960 CTTGGCACGA
105921970 ATATATTATGTT--ATAAAAATATTATA-TT
1 ATAT-TTATGTTAAATAAAAATATTATATTT
*
105921998 A-ATTAATATGTTAAATAATAAT-TTATATTT
1 ATATT--TATGTTAAATAAAAATATTATATTT
105922028 ATATTTATGTTAAAT
1 ATATTTATGTTAAAT
105922043 CAAGAATCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 7 0.18
29 15 0.39
30 10 0.26
31 3 0.08
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (30 bp):
ATATTTATGTTAAATAAAAATATTATATTT
Found at i:105922791 original size:18 final size:19
Alignment explanation
Indices: 105922768--105922812 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
105922758 GTTCAAACGG
105922768 TTAATC-GAACTGAATTTT
1 TTAATCTGAACTGAATTTT
*
105922786 TTAATCATTTAACTGAATTTT
1 TTAATC--TGAACTGAATTTT
105922807 TTAATC
1 TTAATC
105922813 ATTTAACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 6 0.26
21 17 0.74
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.49
Consensus pattern (19 bp):
TTAATCTGAACTGAATTTT
Found at i:105922801 original size:21 final size:21
Alignment explanation
Indices: 105922775--105922819 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
105922765 CGGTTAATCG
105922775 AACTGAATTTTTTAATCATTT
1 AACTGAATTTTTTAATCATTT
105922796 AACTGAATTTTTTAATCATTT
1 AACTGAATTTTTTAATCATTT
105922817 AAC
1 AAC
105922820 AATTAATCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.49
Consensus pattern (21 bp):
AACTGAATTTTTTAATCATTT
Found at i:105924885 original size:23 final size:22
Alignment explanation
Indices: 105924858--105925027 Score: 112
Period size: 23 Copynumber: 7.8 Consensus size: 22
105924848 ATTTCTAATA
105924858 TATATATATATCGTATATATTTT
1 TATATATATAT-GTATATATTTT
105924881 TATATATATTATGTATATATTTT
1 TATATATA-TATGTATATATTTT
105924904 TA-ATAT-TATTAGTTATATATCTTT
1 TATATATATA-T-G-TATATAT-TTT
*
105924928 TATACTATTTCATGTATATATTTT
1 TATA-TATAT-ATGTATATATTTT
* * *
105924952 TATGT-TATCCT-TAT-TATTAT
1 TATATATAT-ATGTATATATTTT
*
105924972 TA-ATAT-TA-G--TATATGTT
1 TATATATATATGTATATATTTT
105924989 T-TAT-TATATGTATATATCTTT
1 TATATATATATGTATATAT-TTT
*
105925010 AATATATATATGTATATA
1 TATATATATATGTATATA
105925028 CTATGTAAAT
Statistics
Matches: 117, Mismatches: 10, Indels: 40
0.70 0.06 0.24
Matches are distributed among these distances:
16 2 0.02
17 9 0.08
18 1 0.01
19 2 0.02
20 15 0.13
21 6 0.05
22 12 0.10
23 41 0.35
24 14 0.12
25 8 0.07
26 4 0.03
27 2 0.02
28 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (22 bp):
TATATATATATGTATATATTTT
Found at i:105925077 original size:51 final size:52
Alignment explanation
Indices: 105925022--105925129 Score: 125
Period size: 51 Copynumber: 2.1 Consensus size: 52
105925012 TATATATATG
* * *
105925022 TATATACTATGTAAATA-TTTCAATA-C-TATATTATGTATGTATTTTTAACA
1 TATATATTACGTAAATACTTTCAATATCAT-TATTATGTATATATTTTTAACA
* * *
105925072 T-TATATTACGTACATACTTTTAATATCATTATTATGTATATATTTTTAATA
1 TATATATTACGTAAATACTTTCAATATCATTATTATGTATATATTTTTAACA
105925123 TATATAT
1 TATATAT
105925130 GTGTATATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
49 12 0.25
50 8 0.17
51 22 0.46
52 6 0.12
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (52 bp):
TATATATTACGTAAATACTTTCAATATCATTATTATGTATATATTTTTAACA
Found at i:105925078 original size:25 final size:25
Alignment explanation
Indices: 105925024--105925139 Score: 103
Period size: 25 Copynumber: 4.7 Consensus size: 25
105925014 TATATATGTA
* * * *
105925024 TATACTATGTAAATA-TTTCAATAC
1 TATATTATGTATATATTTTTAATAT
* *
105925048 TATATTATGTATGTATTTTTAACAT
1 TATATTATGTATATATTTTTAATAT
* * *
105925073 TATATTACGTACATACTTTTAATAT
1 TATATTATGTATATATTTTTAATAT
*
105925098 CATTATTATGTATATATTTTTAATA-
1 TA-TATTATGTATATATTTTTAATAT
*
105925123 TATA-TATGTGTATATTT
1 TATATTATGTATATATTT
105925140 ATGTAGTATT
Statistics
Matches: 73, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
23 12 0.16
24 14 0.19
25 28 0.38
26 19 0.26
ACGTcount: A:0.35, C:0.07, G:0.06, T:0.52
Consensus pattern (25 bp):
TATATTATGTATATATTTTTAATAT
Found at i:105925226 original size:20 final size:21
Alignment explanation
Indices: 105925201--105925240 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
105925191 ATATATTATA
105925201 TATATA-TTTTCAATACTATG
1 TATATACTTTTCAATACTATG
*
105925221 TATATACTTTTTAATACTAT
1 TATATACTTTTCAATACTAT
105925241 TATTATGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TATATACTTTTCAATACTATG
Found at i:105928860 original size:21 final size:21
Alignment explanation
Indices: 105928820--105928860 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
105928810 AGGGTAATAG
* *
105928820 GGTGGAGGAGGGTAAGCGCCT
1 GGTGGACGAGGGTAACCGCCT
*
105928841 GGTGGACGAGGGTATCCGCC
1 GGTGGACGAGGGTAACCGCC
105928861 ATATGGGTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.49, T:0.15
Consensus pattern (21 bp):
GGTGGACGAGGGTAACCGCCT
Found at i:105930498 original size:45 final size:45
Alignment explanation
Indices: 105930448--105930535 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
105930438 CTATTTTTGT
*
105930448 TGTTAAAAACTGATAATTGTACGTCAACATGAAGTACATCTGATA
1 TGTTAAAAACTGATAATTGTACATCAACATGAAGTACATCTGATA
*
105930493 TGTTAAAAACTGATAATTGTACATCAACATGAATTACATCTGA
1 TGTTAAAAACTGATAATTGTACATCAACATGAAGTACATCTGA
105930536 CATGCTACAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (45 bp):
TGTTAAAAACTGATAATTGTACATCAACATGAAGTACATCTGATA
Found at i:105937118 original size:16 final size:17
Alignment explanation
Indices: 105937092--105937127 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
105937082 GCGGTGTGAA
105937092 TAAAGATATAAACATAC
1 TAAAGATATAAACATAC
105937109 TAAA-ATATAAACATAC
1 TAAAGATATAAACATAC
105937125 TAA
1 TAA
105937128 TAATTCAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.61, C:0.11, G:0.03, T:0.25
Consensus pattern (17 bp):
TAAAGATATAAACATAC
Found at i:105942492 original size:21 final size:21
Alignment explanation
Indices: 105942465--105942513 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
105942455 ACCTTTGCTA
105942465 TTTTTGTTGCTATTTTTCCA-
1 TTTTTGTTGCTATTTTTCCAC
* *
105942485 TGTTTTGTTGTTGTTTTTCCAC
1 T-TTTTGTTGCTATTTTTCCAC
105942507 TTTTTGT
1 TTTTTGT
105942514 CATTGTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 23 0.92
22 1 0.04
ACGTcount: A:0.06, C:0.12, G:0.14, T:0.67
Consensus pattern (21 bp):
TTTTTGTTGCTATTTTTCCAC
Found at i:105942519 original size:21 final size:21
Alignment explanation
Indices: 105942477--105942522 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
105942467 TTTGTTGCTA
**
105942477 TTTTTCCATGTTTTGTTGTTG
1 TTTTTCCATGTTTTGTCATTG
105942498 TTTTTCCACT-TTTTGTCATTG
1 TTTTTCCA-TGTTTTGTCATTG
105942519 TTTT
1 TTTT
105942523 GTTACCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.07, C:0.13, G:0.13, T:0.67
Consensus pattern (21 bp):
TTTTTCCATGTTTTGTCATTG
Found at i:105946034 original size:6 final size:6
Alignment explanation
Indices: 105946022--105946065 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
105946012 ACTTCCACTC
* *
105946022 CCGCCT CCACCT CCACCT CCGCCT CCGCCT CCGCCT CCGCCT CC
1 CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CC
105946066 TGTACCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.05, C:0.68, G:0.11, T:0.16
Consensus pattern (6 bp):
CCGCCT
Found at i:105946036 original size:18 final size:18
Alignment explanation
Indices: 105946009--105946065 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
105945999 AACCTGAATG
*
105946009 TCCACTTCCA-CTCCCGCC
1 TCCACCTCCACCT-CCGCC
105946027 TCCACCTCCACCTCCGCC
1 TCCACCTCCACCTCCGCC
* *
105946045 TCCGCCTCCGCCTCCGCC
1 TCCACCTCCACCTCCGCC
105946063 TCC
1 TCC
105946066 TGTACCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
18 33 0.94
19 2 0.06
ACGTcount: A:0.07, C:0.65, G:0.09, T:0.19
Consensus pattern (18 bp):
TCCACCTCCACCTCCGCC
Found at i:105952448 original size:30 final size:31
Alignment explanation
Indices: 105952417--105952476 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
105952407 ATATAGTAAA
*
105952417 TTTACTTTGATCATTTTAAAA-ATAATAAAAT
1 TTTAATTTGATC-TTTTAAAAGATAATAAAAT
* *
105952448 TTTAATTTTATCTTTTAAAAGATTATAAA
1 TTTAATTTGATCTTTTAAAAGATAATAAA
105952477 GATATAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.48
Consensus pattern (31 bp):
TTTAATTTGATCTTTTAAAAGATAATAAAAT
Found at i:105957642 original size:36 final size:36
Alignment explanation
Indices: 105957602--105957673 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
105957592 TTCTTTTTGC
105957602 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
* *
105957638 CGTTCCAAATTCCCACCCCCTTCCCGAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
105957674 TTCTTCTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.17, C:0.47, G:0.04, T:0.32
Consensus pattern (36 bp):
CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
Found at i:105957802 original size:21 final size:22
Alignment explanation
Indices: 105957778--105957830 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
105957768 GTCCCACGAG
*
105957778 GCCACGACCACA-GTTCCACAA
1 GCCACAACCACAGGTTCCACAA
*
105957799 GCCACAAACA-AGGTTCCACAA
1 GCCACAACCACAGGTTCCACAA
105957820 GCCACAACCAC
1 GCCACAACCAC
105957831 CGTTAGTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.38, C:0.42, G:0.13, T:0.08
Consensus pattern (22 bp):
GCCACAACCACAGGTTCCACAA
Found at i:105958149 original size:16 final size:16
Alignment explanation
Indices: 105958130--105958161 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
105958120 TACTAATCAA
*
105958130 AGTTTCTATGTTTCTG
1 AGTTTCCATGTTTCTG
105958146 AGTTTCCATGTTTCTG
1 AGTTTCCATGTTTCTG
105958162 CCTGTCTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (16 bp):
AGTTTCCATGTTTCTG
Found at i:105958309 original size:45 final size:45
Alignment explanation
Indices: 105958239--105958329 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
105958229 AATTAAATTA
** *
105958239 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTCATGCATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
105958284 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
105958329 A
1 A
105958330 TATTAATGCA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (45 bp):
ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
Found at i:105958376 original size:36 final size:37
Alignment explanation
Indices: 105958329--105958403 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 37
105958319 GCATATATAT
* *
105958329 ATATTAATGC-ATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCAATATATATAATGTTTAGCTTCATTTA
*
105958365 ATATTAATGCATATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCA-ATATATATAATGTTTAGCTTCATTTA
105958403 A
1 A
105958404 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 10 0.29
38 24 0.71
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.48
Consensus pattern (37 bp):
ATATTAATGCAATATATATAATGTTTAGCTTCATTTA
Found at i:105958441 original size:43 final size:42
Alignment explanation
Indices: 105958394--105958474 Score: 128
Period size: 42 Copynumber: 1.9 Consensus size: 42
105958384 TAATGTTTTG
*
105958394 CTTCATTTAAGTCATGCGCATAA-TGCATATATATTCCATTTAA
1 CTTCATTTAAGTCAT--GCATAATTGCATATATATACCATTTAA
105958437 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
105958475 AATTAGCAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
41 6 0.17
42 15 0.42
43 15 0.42
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.40
Consensus pattern (42 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATTTAA
Found at i:105958558 original size:36 final size:37
Alignment explanation
Indices: 105958511--105958585 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 37
105958501 CCAAATATAT
* *
105958511 ATATTAATGC-ATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCAATATATATAATGTTTAGCTTCATTTA
*
105958547 ATATTAATGCATATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCA-ATATATATAATGTTTAGCTTCATTTA
105958585 A
1 A
105958586 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 10 0.29
38 24 0.71
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.48
Consensus pattern (37 bp):
ATATTAATGCAATATATATAATGTTTAGCTTCATTTA
Found at i:105961059 original size:21 final size:22
Alignment explanation
Indices: 105961035--105961077 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
105961025 TTACATGTAA
* *
105961035 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
105961056 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
105961078 ATTTCCTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:105966713 original size:9 final size:9
Alignment explanation
Indices: 105966699--105966812 Score: 52
Period size: 9 Copynumber: 12.2 Consensus size: 9
105966689 TATTTATATA
105966699 TTATGTAAG
1 TTATGTAAG
*
105966708 TTATGTAAA
1 TTATGTAAG
*
105966717 TTATGTACG
1 TTATGTAAG
* *
105966726 TTATGAAAT
1 TTATGTAAG
* *
105966735 TTGATCTTTAAA
1 TT-A--TGTAAG
105966747 TTATGTAAG
1 TTATGTAAG
* *
105966756 TTATGAAAT
1 TTATGTAAG
* *
105966765 TTGAACTTTAAA
1 TT--A-TGTAAG
105966777 TTATGTAAG
1 TTATGTAAG
105966786 TTATGT-A-
1 TTATGTAAG
*
105966793 TTATGTAAA
1 TTATGTAAG
*
105966802 TTATGTGAG
1 TTATGTAAG
105966811 TT
1 TT
105966813 GCTGGTGAAC
Statistics
Matches: 77, Mismatches: 20, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
7 6 0.08
8 2 0.03
9 55 0.71
10 2 0.03
11 2 0.03
12 10 0.13
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:105966747 original size:30 final size:30
Alignment explanation
Indices: 105966713--105966790 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
105966703 GTAAGTTATG
* *
105966713 TAAATTATGTACGTTATGAAATTTGATCTT
1 TAAATTATGTAAGTTATGAAATTTGAACTT
105966743 TAAATTATGTAAGTTATGAAATTTGAACTT
1 TAAATTATGTAAGTTATGAAATTTGAACTT
105966773 TAAATTATGTAAGTTATG
1 TAAATTATGTAAGTTATG
105966791 TATTATGTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.45
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAAATTTGAACTT
Found at i:105966797 original size:16 final size:16
Alignment explanation
Indices: 105966776--105966807 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
105966766 TGAACTTTAA
*
105966776 ATTATGTAAGTTATGT
1 ATTATGTAAATTATGT
105966792 ATTATGTAAATTATGT
1 ATTATGTAAATTATGT
105966808 GAGTTGCTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (16 bp):
ATTATGTAAATTATGT
Found at i:105969554 original size:15 final size:15
Alignment explanation
Indices: 105969531--105969562 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
105969521 AAATAATAAT
105969531 TTATATATATTTATC
1 TTATATATATTTATC
*
105969546 TTATTTATATTTATC
1 TTATATATATTTATC
105969561 TT
1 TT
105969563 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:105969607 original size:7 final size:7
Alignment explanation
Indices: 105969597--105969679 Score: 60
Period size: 7 Copynumber: 11.7 Consensus size: 7
105969587 CTTAAACTTG
105969597 AAACCCT
1 AAACCCT
*
105969604 AAACTCT
1 AAACCCT
*
105969611 AAACCTT
1 AAACCCT
*
105969618 AAACCTT
1 AAACCCT
105969625 AAA-CCT
1 AAACCCT
105969631 CAAACCCT
1 -AAACCCT
*
105969639 AAACTCT
1 AAACCCT
*
105969646 AAACCCCA
1 AAA-CCCT
*
105969654 AAACCAT
1 AAACCCT
* *
105969661 ACACCGT
1 AAACCCT
*
105969668 AACCCCT
1 AAACCCT
105969675 AAACC
1 AAACC
105969680 AACCATAAAT
Statistics
Matches: 58, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
6 2 0.03
7 48 0.83
8 8 0.14
ACGTcount: A:0.43, C:0.39, G:0.01, T:0.17
Consensus pattern (7 bp):
AAACCCT
Found at i:105975908 original size:44 final size:44
Alignment explanation
Indices: 105975858--105976219 Score: 607
Period size: 44 Copynumber: 8.2 Consensus size: 44
105975848 GGTAAATCCT
*
105975858 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
*
105975902 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAAATA
1 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* * *
105975946 GCAGATTTGGCGTTTCTGTATTGGCAGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* *
105975990 GTAGATTTGGCGTCTCTGTATTGGCGGAGAGCGGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
105976034 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* *
105976078 GCAGATTTGGCATCTCTGTATTGGCGAAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
* * * *
105976122 GCAGATTTGGCATCTCCGTATTGGCAGAGAACAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
105976166 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
105976210 GCAGATTTGG
1 GCAGATTTGG
105976220 TATTCCTGAG
Statistics
Matches: 295, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 295 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25
Consensus pattern (44 bp):
GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
Found at i:105977893 original size:12 final size:13
Alignment explanation
Indices: 105977878--105977907 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
105977868 TTCTTCATTT
105977878 TTTTTAATTTT-A
1 TTTTTAATTTTAA
105977890 TTTTTAATTTTAA
1 TTTTTAATTTTAA
105977903 TTTTT
1 TTTTT
105977908 TTCTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTAATTTTAA
Found at i:105979899 original size:130 final size:130
Alignment explanation
Indices: 105979713--105980084 Score: 395
Period size: 130 Copynumber: 2.9 Consensus size: 130
105979703 AAAATTCTTC
* *
105979713 AAAACGAAGACGAAATTTGATGTTCGGCAATTCGCGGAATCTTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * * * *
105979778 TTTTGCATTTGCTCAAAAAAATCGAATTTCCCTTCGAAATTCCATTCATATCTTTTAAAATCCCT
66 TTTCGCATTTGCTCAAAAAAATCGAATATCACTTCAAAATTCCACTCATATCTTTTAAAATCCCT
* * * * *
105979843 TAAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAGTCGTGCCCTAACATGTTGGGTTGCAA
1 AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * * * * * * * *
105979908 TTTCGTATTTGCTCGAAATAATCGAATATCACTTTAAAATTTCGCTCGTGTCTTTTAAAGTCCCT
66 TTTCGCATTTGCTCAAAAAAATCGAATATCACTTCAAAATTCCACTCATATCTTTTAAAATCCCT
* * * * * * ** *
105979973 AAAACGAAGGCGATATCTGGTATTTGACAATTCATGGAATCGTGCCCTAACGTGTTGGGTAGCAA
1 AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * * * * * *
105980038 TTTCTCGA-TTGTTTAAAATAATCAAATATCCCTTCAAAATTTCACTC
66 TTTCGC-ATTTGCTCAAAAAAATCGAATATCACTTCAAAATTCCACTC
105980085 GGCTCTTCTA
Statistics
Matches: 198, Mismatches: 43, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
130 197 0.99
131 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (130 bp):
AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
TTTCGCATTTGCTCAAAAAAATCGAATATCACTTCAAAATTCCACTCATATCTTTTAAAATCCCT
Found at i:105983923 original size:24 final size:24
Alignment explanation
Indices: 105983874--105983983 Score: 139
Period size: 24 Copynumber: 4.6 Consensus size: 24
105983864 TTCAACTTCG
* * * * *
105983874 CACACATAGTGCCAAATAATTCCG
1 CACACATAGTGCCATACAAATACA
* * *
105983898 CACACATAGTGCCTTACATATACG
1 CACACATAGTGCCATACAAATACA
*
105983922 CACACATAATGCCATACAAATACA
1 CACACATAGTGCCATACAAATACA
105983946 CACACATAGTGCCATACAAATACA
1 CACACATAGTGCCATACAAATACA
105983970 CACACATAGTGCCA
1 CACACATAGTGCCA
105983984 CTTAAATCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 75 1.00
ACGTcount: A:0.41, C:0.30, G:0.10, T:0.19
Consensus pattern (24 bp):
CACACATAGTGCCATACAAATACA
Found at i:105990664 original size:24 final size:24
Alignment explanation
Indices: 105990637--105990697 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
105990627 AATAATTCCG
* *
105990637 CACACATAGTGCCTTACATATACA
1 CACACATAGTGCCGTACAAATACA
*
105990661 CACACATAGTGCCGTACAAATACG
1 CACACATAGTGCCGTACAAATACA
105990685 CACACATAGTGCC
1 CACACATAGTGCC
105990698 ACTTAAATCC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.36, C:0.31, G:0.13, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCGTACAAATACA
Found at i:105990705 original size:24 final size:24
Alignment explanation
Indices: 105990611--105990710 Score: 82
Period size: 24 Copynumber: 4.2 Consensus size: 24
105990601 GATTCAACTC
** * *
105990611 CGCACACATAGTGCCAAATAATTC
1 CGCACACATAGTGCCACTTAAATA
105990635 CGCACACATAGTG-C-CTTACATATA
1 CGCACACATAGTGCCACTTA-A-ATA
*
105990659 CACACACATAGTGCCGTAC--AAATA
1 CGCACACATAGTGCC--ACTTAAATA
*
105990683 CGCACACATAGTGCCACTTAAATC
1 CGCACACATAGTGCCACTTAAATA
105990707 CGCA
1 CGCA
105990711 TATCTAGTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
22 4 0.07
23 2 0.03
24 51 0.84
25 2 0.03
26 1 0.02
28 1 0.02
ACGTcount: A:0.36, C:0.31, G:0.13, T:0.20
Consensus pattern (24 bp):
CGCACACATAGTGCCACTTAAATA
Found at i:105999177 original size:19 final size:20
Alignment explanation
Indices: 105999141--105999191 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
105999131 AAATTACAAA
* *
105999141 AAAAAATCAAATTAATTT-T
1 AAAAATTCAAAATAATTTAT
105999160 CAAAAATTCAAAAT-ATTTAT
1 -AAAAATTCAAAATAATTTAT
105999180 AAAAATTTCAAA
1 AAAAA-TTCAAA
105999192 TTTATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTAT
Found at i:106024655 original size:28 final size:26
Alignment explanation
Indices: 106024624--106024713 Score: 62
Period size: 29 Copynumber: 3.3 Consensus size: 26
106024614 ACGATTCTAA
106024624 TATAAATATTAAAATAATGTTAAAAAAT
1 TATAAATA-TAAAATAAT-TTAAAAAAT
*
106024652 TAT--ATA-AAAATAATAAATAAAAAAT
1 TATAAATATAAAATAAT--TTAAAAAAT
106024677 TATAATATAATATAAAT-ATTTAAAAAAAT
1 TATAA-AT-ATA-AAATAATTT-AAAAAAT
*
106024706 TAAAAATA
1 TATAAATA
106024714 ATATGAACGA
Statistics
Matches: 50, Mismatches: 4, Indels: 17
0.70 0.06 0.24
Matches are distributed among these distances:
24 8 0.16
25 11 0.22
26 3 0.06
27 1 0.02
28 8 0.16
29 12 0.24
30 3 0.06
31 4 0.08
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (26 bp):
TATAAATATAAAATAATTTAAAAAAT
Found at i:106024688 original size:25 final size:24
Alignment explanation
Indices: 106024644--106024694 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
106024634 AAAATAATGT
106024644 TAAAAAATTATATAAAAATAATAAA
1 TAAAAAATTATATAAAAAT-ATAAA
*
106024669 TAAAAAATTATA-ATATAATATAAA
1 TAAAAAATTATATA-AAAATATAAA
106024693 TA
1 TA
106024695 TTTAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (24 bp):
TAAAAAATTATATAAAAATATAAA
Found at i:106024922 original size:10 final size:10
Alignment explanation
Indices: 106024907--106024936 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
106024897 TTTTTTATAA
106024907 TTTCTTAATT
1 TTTCTTAATT
106024917 TTTCTTAATT
1 TTTCTTAATT
106024927 TTTCTTAATT
1 TTTCTTAATT
106024937 AACATCAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTCTTAATT
Found at i:106032438 original size:38 final size:38
Alignment explanation
Indices: 106032393--106032468 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
106032383 TATAAGGACT
106032393 AAAAATGATAGAAATTAAAATTCAGTAGTAATTGAGAA
1 AAAAATGATAGAAATTAAAATTCAGTAGTAATTGAGAA
106032431 AAAAATGATAGAAATTAAAATTCAGTAGTAATTGAGAA
1 AAAAATGATAGAAATTAAAATTCAGTAGTAATTGAGAA
106032469 TTTAACCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.55, C:0.03, G:0.16, T:0.26
Consensus pattern (38 bp):
AAAAATGATAGAAATTAAAATTCAGTAGTAATTGAGAA
Found at i:106032524 original size:28 final size:28
Alignment explanation
Indices: 106032481--106032534 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
106032471 TAACCTTTTC
* *
106032481 GGGTTACTTACTGTATCGGGAATGGCAA
1 GGGTTACTTACAGTATCAGGAATGGCAA
106032509 GGGTTACTTACAGTATCAGGAATGGC
1 GGGTTACTTACAGTATCAGGAATGGC
106032535 CTTTTTGACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGGTTACTTACAGTATCAGGAATGGCAA
Found at i:106039417 original size:20 final size:21
Alignment explanation
Indices: 106039384--106039424 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
106039374 AAATGTATAT
* *
106039384 AATAATATTGAAATGTGTAAA
1 AATAATAATGAAATGTCTAAA
106039405 AATAATAAT-AAATGTCTAAA
1 AATAATAATGAAATGTCTAAA
106039425 GTACTCTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (21 bp):
AATAATAATGAAATGTCTAAA
Found at i:106041034 original size:5 final size:5
Alignment explanation
Indices: 106041024--106041054 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
106041014 ATAATGTGAT
106041024 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
106041055 GTTATATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:106047318 original size:14 final size:13
Alignment explanation
Indices: 106047292--106047329 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
106047282 AGTGAAAAAG
106047292 ATTAATTATTATA
1 ATTAATTATTATA
106047305 ATTAATTAATTATA
1 ATTAATT-ATTATA
*
106047319 ATAAATT-TTAT
1 ATTAATTATTAT
106047330 GATTTAATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 4 0.17
13 7 0.30
14 12 0.52
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTAATTATTATA
Found at i:106049562 original size:31 final size:31
Alignment explanation
Indices: 106049492--106049572 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
106049482 TTTAATAGTT
* **
106049492 TATATTTTTATAATTTTT-AAAAAATTAAGT
1 TATAATTTTATAATTTTTAAAAAAATTAAAA
*
106049522 TA-AATTTTTATTATTTTTAAAAAAATTAAAA
1 TATAA-TTTTATAATTTTTAAAAAAATTAAAA
* *
106049553 TATAATTTTATCATTATTAA
1 TATAATTTTATAATTTTTAA
106049573 TTTAAAATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
29 1 0.02
30 14 0.33
31 25 0.60
32 2 0.05
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (31 bp):
TATAATTTTATAATTTTTAAAAAAATTAAAA
Found at i:106052777 original size:6 final size:6
Alignment explanation
Indices: 106052761--106052798 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
106052751 CCTCCCAAGG
106052761 TATTT- TATTTA TATTTA TATTTA TATTTA TATTTA TAT
1 TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TAT
106052799 AACTGTGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATTTA
Found at i:106062122 original size:22 final size:22
Alignment explanation
Indices: 106062094--106062140 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
106062084 AAATTTGTAA
106062094 ATTTTATCTTAAATTTATTCGG
1 ATTTTATCTTAAATTTATTCGG
106062116 ATTTTATCTTAAATTTATTCGG
1 ATTTTATCTTAAATTTATTCGG
106062138 ATT
1 ATT
106062141 AGTTAAATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.55
Consensus pattern (22 bp):
ATTTTATCTTAAATTTATTCGG
Found at i:106064205 original size:35 final size:34
Alignment explanation
Indices: 106064166--106064245 Score: 85
Period size: 35 Copynumber: 2.3 Consensus size: 34
106064156 AATTTAATTT
106064166 ATATTTTATTATTTGATTCA-AATATAATCTGT-AAA
1 ATATTTTATTATTTGATT-AGAATATAAT-T-TAAAA
*
106064201 ATATTTTGA-TATTTTATTATGAATATAATTTAAAA
1 ATATTTT-ATTATTTGATTA-GAATATAATTTAAAA
106064236 ATATTTTATT
1 ATATTTTATT
106064246 GTATATTTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
34 3 0.08
35 27 0.69
36 9 0.23
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.53
Consensus pattern (34 bp):
ATATTTTATTATTTGATTAGAATATAATTTAAAA
Found at i:106064412 original size:19 final size:18
Alignment explanation
Indices: 106064370--106064415 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
106064360 ATATAATTGT
*
106064370 AATAATTTTTAATTATTT
1 AATAATTTTTAATTATTA
* *
106064388 ATTAATTTTGTAATTGTTA
1 AATAATTTT-TAATTATTA
106064407 AATAATTTT
1 AATAATTTT
106064416 AAAAACTTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (18 bp):
AATAATTTTTAATTATTA
Found at i:106064555 original size:21 final size:21
Alignment explanation
Indices: 106064527--106064581 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
106064517 ACCGCTGTTT
106064527 CTAATCTCACCGCTACAGTATC
1 CTAATCTCACCGCTACAGTA-C
106064549 C-AATCTCACCGCTACAGTAC
1 CTAATCTCACCGCTACAGTAC
*
106064569 CTAATATCACCGC
1 CTAATCTCACCGC
106064582 CACCGCTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 2 0.06
21 28 0.90
22 1 0.03
ACGTcount: A:0.29, C:0.38, G:0.09, T:0.24
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAC
Found at i:106066578 original size:28 final size:29
Alignment explanation
Indices: 106066547--106066605 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
106066537 CTGAGTGAGC
*
106066547 TTTCATACACTCTTAAAAAAT-GACCTAT
1 TTTCATAAACTCTTAAAAAATCGACCTAT
* * *
106066575 TTTCTTAAATTTTTAAAAAATCGACCTAT
1 TTTCATAAACTCTTAAAAAATCGACCTAT
106066604 TT
1 TT
106066606 GACCAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.37, C:0.17, G:0.03, T:0.42
Consensus pattern (29 bp):
TTTCATAAACTCTTAAAAAATCGACCTAT
Found at i:106068979 original size:107 final size:110
Alignment explanation
Indices: 106068826--106069043 Score: 320
Period size: 107 Copynumber: 2.0 Consensus size: 110
106068816 AAGACACTGG
* *
106068826 TTCCCAAACTACTTATGTTCTACTCAAGAAAAACTTGAACTTGACTCAATAATTATCGAGCCAAG
1 TTCCCAAACTACTTATGTTCTACTCAAGAAAAACTTGAACTCGACTCAATAATTATCAAGCCAAG
*
106068891 CTCAAACTATTGGTCAAGCTGAATTTGAGGCTTC-GTAATACTCAGC
66 CTCAAACTATTGGACAAGCTGAATTTGA-GC-TCAGTAATACTCAGC
*
106068937 TTCCCAAACTACTTATG-T-T-C-GAAGAAAAACTTGAACTCGACTCAATAATTATCAAGCCAAG
1 TTCCCAAACTACTTATGTTCTACTCAAGAAAAACTTGAACTCGACTCAATAATTATCAAGCCAAG
* * *
106068998 CTCGAACTATTGGACAATCTGAATTTGAGCTCAGTTATACTCAGC
66 CTCAAACTATTGGACAAGCTGAATTTGAGCTCAGTAATACTCAGC
106069043 T
1 T
106069044 CAAACAACTT
Statistics
Matches: 99, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
105 2 0.02
106 14 0.14
107 63 0.64
108 1 0.01
109 1 0.01
110 1 0.01
111 17 0.17
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.29
Consensus pattern (110 bp):
TTCCCAAACTACTTATGTTCTACTCAAGAAAAACTTGAACTCGACTCAATAATTATCAAGCCAAG
CTCAAACTATTGGACAAGCTGAATTTGAGCTCAGTAATACTCAGC
Found at i:106072899 original size:16 final size:17
Alignment explanation
Indices: 106072868--106072900 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
106072858 TGTAAAATTT
*
106072868 AACTCGACTGAACTCAA
1 AACTCGAATGAACTCAA
106072885 AACTCGAAT-AACTCAA
1 AACTCGAATGAACTCAA
106072901 TTCGATTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.27, G:0.09, T:0.18
Consensus pattern (17 bp):
AACTCGAATGAACTCAA
Found at i:106072918 original size:16 final size:16
Alignment explanation
Indices: 106072878--106072919 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
106072868 AACTCGACTG
*
106072878 AACTCAAAACTCGAAT
1 AACTCAAAATTCGAAT
*
106072894 AACTC--AATTCGATT
1 AACTCAAAATTCGAAT
106072908 AACTCAAAATTC
1 AACTCAAAATTC
106072920 AAACTTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 12 0.55
16 10 0.45
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (16 bp):
AACTCAAAATTCGAAT
Found at i:106073019 original size:18 final size:20
Alignment explanation
Indices: 106072988--106073026 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
106072978 CAACTGCTAA
106072988 ATTTTTTACTTAGTT-TTTG
1 ATTTTTTACTTAGTTCTTTG
*
106073007 ATTTTTTGC-TAGTTCTTTG
1 ATTTTTTACTTAGTTCTTTG
106073026 A
1 A
106073027 GAGTCTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.15, C:0.08, G:0.13, T:0.64
Consensus pattern (20 bp):
ATTTTTTACTTAGTTCTTTG
Found at i:106076960 original size:21 final size:20
Alignment explanation
Indices: 106076913--106076961 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
106076903 AAGCCCTAGT
* *
106076913 ATTTTTGTTGTTGTTTTTTC
1 ATTTTTGCTGTTGTTTTCTC
106076933 ATATTTTGCTGTTGTTTTCTC
1 AT-TTTTGCTGTTGTTTTCTC
106076954 ACTTTTTG
1 A-TTTTTG
106076962 TAATTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 22 0.88
22 1 0.04
ACGTcount: A:0.08, C:0.10, G:0.14, T:0.67
Consensus pattern (20 bp):
ATTTTTGCTGTTGTTTTCTC
Found at i:106084393 original size:33 final size:33
Alignment explanation
Indices: 106084351--106084417 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
106084341 CATGGCAACG
106084351 AGTATATATATTTTTATCGCACCAACCGATTTT
1 AGTATATATATTTTTATCGCACCAACCGATTTT
106084384 AGTATATATATTTTTATCGCACCAACCGATTTT
1 AGTATATATATTTTTATCGCACCAACCGATTTT
106084417 A
1 A
106084418 AAAAATATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (33 bp):
AGTATATATATTTTTATCGCACCAACCGATTTT
Found at i:106084428 original size:35 final size:33
Alignment explanation
Indices: 106084354--106084427 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 33
106084344 GGCAACGAGT
**
106084354 ATATATATTTTTATCGCACCAACCGATTTTAGT
1 ATATATATTTTTATCGCACCAACCGATTTTAAA
106084387 ATATATATTTTTATCGCACCAACCGATTTTAAA
1 ATATATATTTTTATCGCACCAACCGATTTTAAA
*
106084420 AAATATAT
1 ATATATAT
106084428 ATAACAATGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (33 bp):
ATATATATTTTTATCGCACCAACCGATTTTAAA
Found at i:106084499 original size:26 final size:27
Alignment explanation
Indices: 106084467--106084517 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
106084457 TTGAAATTTG
106084467 AAAAGT-AA-AGATTAAATTCTTAAAAA
1 AAAAGTAAAGAGATTAAATT-TTAAAAA
106084493 AAAAGTAAAGAGATTAAATTTTAAA
1 AAAAGTAAAGAGATTAAATTTTAAA
106084518 TTTATGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 6 0.26
27 7 0.30
28 10 0.43
ACGTcount: A:0.61, C:0.02, G:0.10, T:0.27
Consensus pattern (27 bp):
AAAAGTAAAGAGATTAAATTTTAAAAA
Found at i:106094326 original size:31 final size:32
Alignment explanation
Indices: 106094267--106094326 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
106094257 TTTCAATTAC
*
106094267 TAAACTATTCAAAAGTTCTTCATTTAAGTTAT
1 TAAACTATTCAAAAGTTATTCATTTAAGTTAT
*
106094299 TAAATTATTCAAAAGTTATT-ATTTAAGT
1 TAAACTATTCAAAAGTTATTCATTTAAGT
106094327 CTTTTTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 8 0.31
32 18 0.69
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (32 bp):
TAAACTATTCAAAAGTTATTCATTTAAGTTAT
Found at i:106095431 original size:14 final size:14
Alignment explanation
Indices: 106095412--106095453 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
106095402 CTTTCGAATA
106095412 TTTTTTCTTTCTTT
1 TTTTTTCTTTCTTT
*
106095426 TTTTTT-TGTTGTTT
1 TTTTTTCT-TTCTTT
106095440 TTTTTTCTTTCTTT
1 TTTTTTCTTTCTTT
106095454 ATATATACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 1 0.04
14 22 0.92
15 1 0.04
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.86
Consensus pattern (14 bp):
TTTTTTCTTTCTTT
Found at i:106096535 original size:24 final size:26
Alignment explanation
Indices: 106096490--106096537 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
106096480 TTAATACATG
106096490 TTTTATATATGTATATATTATGTATA
1 TTTTATATATGTATATATTATGTATA
106096516 TTTTA-ATAT-TATAT-TATATGTA
1 TTTTATATATGTATATAT-TATGTA
106096538 CGTATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 11 0.52
25 4 0.19
26 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTATATATGTATATATTATGTATA
Found at i:106108168 original size:75 final size:75
Alignment explanation
Indices: 106108027--106108588 Score: 663
Period size: 75 Copynumber: 7.5 Consensus size: 75
106108017 CTACGGTTCA
* * * *
106108027 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-AGACACGCTGAGGTAATTTCAA
*
106108092 TTTCTGCCTTTC
64 TTTCTGTCTTTC
* *
106108104 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
106108169 TCTGTCTTTC
66 TCTGTCTTTC
* *** * **
106108179 AAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGATAATTTTT
1 ---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
106108244 ATTTCTG--TTTC
63 ATTTCTGTCTTTC
* * * * * * *
106108255 --AAAATTCAACTCATACTGCAAGAAGTGATTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
106108318 TCTGTCTTTC
66 TCTGTCTTTC
* * * * * * * *
106108328 AAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAAGTATTTTAAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
106108393 TCTGTCTTTC
66 TCTGTCTTTC
106108403 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
106108467 TCTGTCTTTC
66 TCTGTCTTTC
* * * ** *
106108477 AAAATAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTGATC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
**
106108542 TCCAT-TTTC
66 TCTGTCTTTC
* * *
106108551 --GAAAATCAACTAATATTGCGAGAGGTGAGTGGAGCCTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
106108589 TGATCACATG
Statistics
Matches: 426, Mismatches: 51, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
71 53 0.12
72 33 0.08
73 4 0.01
74 70 0.16
75 161 0.38
76 6 0.01
77 37 0.09
78 62 0.15
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (75 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
TCTGTCTTTC
Found at i:106108317 original size:149 final size:148
Alignment explanation
Indices: 106108023--106108709 Score: 667
Period size: 149 Copynumber: 4.5 Consensus size: 148
106108013 ATTTCTACGG
* * *
106108023 TTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACACGTTGAGGTATTT
1 TTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG--GGACACGCTGAGATATTT
* *
106108088 TCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGC
64 TCAATTTCTG--TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
106108153 TGAGGTAATTTCAATTTCTGTCT
126 TGAGGTAATTTCAATTTCTGTCT
*
106108176 TTCAAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGATAATT
1 TTC--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGAT-ATT
* * * * * * *
106108241 TT-TATTTCTGTTTC-AAAATTCAACTCATACTGCAAGAAGTGATTTGAGCCTCAAGACACGTTG
63 TTCAATTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
*
106108304 AGGTATTTTCAATTTCTGTCT
128 AGGTAATTTCAATTTCTGTCT
* * * * *** *
106108325 TTC-AAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGA-AGTATTTT
1 TTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGA-TATTTT
*
106108388 AAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
65 CAATTTCTG--TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
106108453 AGGTAATTTCAATTTCTGTCT
128 AGGTAATTTCAATTTCTGTCT
* * ** *
106108474 TTC-AAAATAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTT
1 TTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGAT-ATTTT
* * * * * *
106108538 -GATCTCCAT-TTTC-GAAAATCAACTAATATTGCGAGAGGTGAGTGGAGCCTC-TGATCACATG
65 CAAT-TTC-TGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-CAC--G
* *
106108599 -TCGAGGTATTTTCAAATTCTG-CTT
125 CT-GAGGTAATTTCAATTTCTGTC-T
* * *
106108623 TTCAAATTAAGTTTCAAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACACGCT
1 TTC--A--AA-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG--GACACGCT
*
106108688 GAGCTATTTTCAATTTCTGTTT
55 GAGATATTTTCAATTTCTGTTT
106108710 TTAATGTCTG
Statistics
Matches: 445, Mismatches: 58, Indels: 55
0.80 0.10 0.10
Matches are distributed among these distances:
145 6 0.01
146 53 0.12
147 38 0.09
148 10 0.02
149 199 0.45
150 7 0.02
151 5 0.01
153 21 0.05
154 7 0.02
155 41 0.09
159 35 0.08
160 10 0.02
161 13 0.03
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (148 bp):
TTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGATATTTTC
AATTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTCAATTTCTGTCT
Found at i:106108492 original size:224 final size:221
Alignment explanation
Indices: 106108029--106108537 Score: 642
Period size: 224 Copynumber: 2.3 Consensus size: 221
106108019 ACGGTTCAAA
* * * * * *
106108029 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACACGTTGAGGTATTTTCAATT
1 AAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCC-TCA-AGACACGTTGAGGTATTTTCAATT
* ** * * *
106108094 TCTGCCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
64 TCTGCCTTTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAAGT
* ***
106108159 AATTTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGG
129 AATTTAAATTTCTGTCTTTC---AAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAA
**
106108224 GACACGCTGAGATAATTTTTATTTCTGTTTC
191 GACACGCTGAGATAATTTCAATTTCTGTTTC
*
106108255 AAAATTCAACTCATACTGCAAGAAGTGATTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* * * *
106108320 TGTCTTTCAAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAAGTAT
66 TGCCTTTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAAGTAA
*
106108385 TTTAAATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
131 TTTAAATTTCTGTCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACAC
*
106108449 GCTGAGGTAATTTCAATTTCTGTCTTTC
196 GCTGAGATAATTTCAATTTCTG--TTTC
* * * * * *
106108477 AAAATAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTT
1 AAAAT--TCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTT
106108538 GATCTCCATT
Statistics
Matches: 246, Mismatches: 32, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
220 61 0.25
222 9 0.04
224 138 0.56
225 7 0.03
226 31 0.13
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (221 bp):
AAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGCCTTTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAAGTAA
TTTAAATTTCTGTCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGATAATTTCAATTTCTGTTTC
Found at i:106108706 original size:87 final size:87
Alignment explanation
Indices: 106108547--106108711 Score: 208
Period size: 87 Copynumber: 1.9 Consensus size: 87
106108537 TGATCTCCAT
* * * * *
106108547 TTTCGAAAATCAACTAATATTGCGAGAGGTGAGTGGAGCCTCTGATCACATGTCGAGGTATTTTC
1 TTTCAAAAACCAACTAATATTGCGAGAAGTGAGTGGAGCCTCTGATCACACGTCGAGCTATTTTC
106108612 AAATTCTGCTTTTCAAATTAAG
66 AAATTCTGCTTTTCAAATTAAG
* * *
106108634 TTTCAAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCACACG-CTGAGCTATTT
1 TTTCAAAAACCAACTAATATTGCGAGAAGTGAGTGGAGCCTCT-GATCACACGTC-GAGCTATTT
* *
106108697 TCAATTTCTGTTTTT
64 TCAAATTCTGCTTTT
106108712 AATGTCTGTT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
86 2 0.03
87 64 0.97
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (87 bp):
TTTCAAAAACCAACTAATATTGCGAGAAGTGAGTGGAGCCTCTGATCACACGTCGAGCTATTTTC
AAATTCTGCTTTTCAAATTAAG
Found at i:106110020 original size:11 final size:11
Alignment explanation
Indices: 106109978--106110021 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
106109968 CTCCCCTCCC
106109978 TTCTCTCTTCT
1 TTCTCTCTTCT
*
106109989 TTCTCCCTTCTT
1 TTCTCTCTTC-T
* *
106110001 TTTTTTCTTCT
1 TTCTCTCTTCT
106110012 TTCTCTCTTC
1 TTCTCTCTTC
106110022 AAAATGATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (11 bp):
TTCTCTCTTCT
Found at i:106110953 original size:24 final size:26
Alignment explanation
Indices: 106110908--106110955 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
106110898 TTAATACATG
106110908 TTTTATATATGTATATATTATGTATA
1 TTTTATATATGTATATATTATGTATA
106110934 TTTTA-ATAT-TATAT-TATATGTA
1 TTTTATATATGTATATAT-TATGTA
106110956 CGTATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 11 0.52
25 4 0.19
26 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTATATATGTATATATTATGTATA
Found at i:106121400 original size:14 final size:14
Alignment explanation
Indices: 106121383--106121410 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106121373 AAGTAAAAGT
106121383 TAAGTGTGGTTTTA
1 TAAGTGTGGTTTTA
106121397 TAAGTGTGGTTTTA
1 TAAGTGTGGTTTTA
106121411 GAAATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (14 bp):
TAAGTGTGGTTTTA
Found at i:106122793 original size:53 final size:51
Alignment explanation
Indices: 106122646--106122798 Score: 182
Period size: 52 Copynumber: 2.9 Consensus size: 51
106122636 TGACGGAAAA
*
106122646 AATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTAT-GACATTGGTGC
1 AATGTGATATGTG-TTCCGTATAAGACCATAGCTGGGCTATGGA-ATCGGTGC
* *
106122698 AATGTGATACGTGTTCCCGTATAAGACCATAGCTGGGCTATGGAATCGGTGT
1 AATGTGATATGTGTT-CCGTATAAGACCATAGCTGGGCTATGGAATCGGTGC
* * * * *
106122750 GATGTGATAATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCG
1 AATGTGAT-ATGTG-TTCCGTATAAGACCATAGCTGGGCTATGGAATCG
106122799 ATATGATATG
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
51 2 0.02
52 50 0.57
53 34 0.39
54 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (51 bp):
AATGTGATATGTGTTCCGTATAAGACCATAGCTGGGCTATGGAATCGGTGC
Found at i:106126320 original size:21 final size:22
Alignment explanation
Indices: 106126285--106126326 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
106126275 TGATTCCGAG
*
106126285 ATATTATTATCAGATTTTCATC
1 ATATTATTATCAGATATTCATC
*
106126307 ATATTATT-TTAGATATTCAT
1 ATATTATTATCAGATATTCAT
106126327 TCTTTACTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (22 bp):
ATATTATTATCAGATATTCATC
Found at i:106128517 original size:25 final size:25
Alignment explanation
Indices: 106128467--106128518 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
106128457 TTAAACATTG
* *
106128467 AAATATGATTATAAAAATATTTTTA
1 AAATATCATTATAAAAATATTATTA
*
106128492 AAATATCATTTTAAAAA-ATTGATTA
1 AAATATCATTATAAAAATATT-ATTA
106128517 AA
1 AA
106128519 CATTTCAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 3 0.13
25 20 0.87
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (25 bp):
AAATATCATTATAAAAATATTATTA
Found at i:106129351 original size:302 final size:302
Alignment explanation
Indices: 106128720--106129552 Score: 911
Period size: 302 Copynumber: 2.8 Consensus size: 302
106128710 AAAAAAAAAT
* * * *
106128720 TAAAATACCCTCGAATAATATGACTTACTTTCATTACGGAAGGCATTTTCGTAATTTCCCTAACC
1 TAAAATACCCTCGAATAATATGACTTACTTTAATTACGAAAGACATTTTCGTAATTTTCCTAACC
* * * * ** *
106128785 GAGTTGGTGCATGATTGACTCATGACACCAACTCAGCCAGAGATTTTATTAAT--AG----TACA
66 GAG-TAGTGAATGGTTGACTCGTGACACCAACTCAGTTAGAGATTTTATTAATGAAGTATATATA
* * * * * * *** * *
106128844 GATATAAAACTGACGGAGATAGTAAATTGTGCATACTAAAATAAAAATGCCTAGAATATACTAAA
130 GATATACAATTGATGAAGATAATAAATTGTGCATAATAAAATAAAAATATATAAAATATATTAAA
* *
106128909 ATGAAACTTTGGTTGAGTGGTAAATTTAAAATTTTACTAATACAATTGGTGCAGGTTCAATTGCC
195 ATGAAACTTTGGTTGAGTGGTAAATTTAAAATTTTACTAATACAATTAGTGCAGGTTCAAATGCC
* * * * *
106128974 ACCTTATGCAAATTTTTATTGGTTTTTGTTAAAATGGAATGAC
260 ACCTCATGCAAATTTTAATTGATTTTTGTTAAAATGAAAAGAC
* * *
106129017 TAAAATACTCTCGAATAATATGAGTTACTTTAATTACGAAAGAACATTTTTGTAATTTTCCTAAC
1 TAAAATACCCTCGAATAATATGACTTACTTTAATTACGAAAG-ACATTTTCGTAATTTTCCTAAC
**
106129082 CGAGCTAGTGTTTGGTTGACTCGTGACACCAACGT-AGTTAGAGATTTTATTAAAATGAAGTATA
65 CGAG-TAGTGAATGGTTGACTCGTGACACCAAC-TCAGTTAGAGATTTTATT--AATGAAGTATA
* *
106129146 TATAGATATACAATTGATGAAGATAATAAAATGTGCATAATAAAA-AAATATATATAAAATATAT
126 TATAGATATACAATTGATGAAGATAATAAATTGTGCATAATAAAATAAAAATATATAAAATATAT
* * * * * *
106129210 TAAAATG-AAGTTCTGGTTGGGTGGTAAATTTAAGATTTTACTAATGCAATTATTGCGGGTTCAA
191 TAAAATGAAACTT-TGGTTGAGTGGTAAATTTAAAATTTTACTAATACAATTAGTGCAGGTTCAA
*
106129274 AT-CC-CC-CATGCAAATTTTAATTGATTTTTGTTAAACTGAAAAGAC
255 ATGCCACCTCATGCAAATTTTAATTGATTTTTGTTAAAATGAAAAGAC
* * * * *
106129319 TAAAATTCCCTCGAATAGTATGACTTACTTTAATTATGAAAGGGA-ATTTTCATAATTTTTCTAA
1 TAAAATACCCTCGAATAATATGACTTACTTTAATTACGAAA--GACATTTTCGTAATTTTCCTAA
* * * * * *
106129383 TCGAGTTGAT-AACCGGTTAACTTGTGACACCAACTCAATTAGAGATTTTATTAATCGTAAGTAT
64 CCGAGTAG-TGAA-TGGTTGACTCGTGACACCAACTCAGTTAGAGATTTTATTAAT-G-AAGTAT
* * * *
106129447 AGATATAGATATACAATTTATGAAGATAATAATTTGTACATATTAAAATAAAAATATATAAAATA
125 --ATATAGATATACAATTGATGAAGATAATAAATTGTGCATAATAAAATAAAAATATATAAAATA
106129512 TATTAAAATGAAACTTTGGTTGAGTGGTAAATTTAAAATTT
188 TATTAAAATGAAACTTTGGTTGAGTGGTAAATTTAAAATTT
106129553 AATATTTTAT
Statistics
Matches: 446, Mismatches: 68, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
297 38 0.09
298 60 0.13
299 1 0.00
300 6 0.01
301 4 0.01
302 131 0.29
303 3 0.01
304 48 0.11
305 114 0.26
306 41 0.09
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (302 bp):
TAAAATACCCTCGAATAATATGACTTACTTTAATTACGAAAGACATTTTCGTAATTTTCCTAACC
GAGTAGTGAATGGTTGACTCGTGACACCAACTCAGTTAGAGATTTTATTAATGAAGTATATATAG
ATATACAATTGATGAAGATAATAAATTGTGCATAATAAAATAAAAATATATAAAATATATTAAAA
TGAAACTTTGGTTGAGTGGTAAATTTAAAATTTTACTAATACAATTAGTGCAGGTTCAAATGCCA
CCTCATGCAAATTTTAATTGATTTTTGTTAAAATGAAAAGAC
Found at i:106130506 original size:22 final size:23
Alignment explanation
Indices: 106130469--106130529 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 23
106130459 TGTTAGAACG
106130469 AGAAAAATGATT-TTTTTAAGAT
1 AGAAAAATGATTATTTTTAAGAT
* *
106130491 A-AAAAATGATTA-TTTTATGTT
1 AGAAAAATGATTATTTTTAAGAT
*
106130512 AGCAAAATGATTATTTTT
1 AGAAAAATGATTATTTTT
106130530 GTAAGAGTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 18 0.55
22 11 0.33
23 4 0.12
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.44
Consensus pattern (23 bp):
AGAAAAATGATTATTTTTAAGAT
Found at i:106135424 original size:30 final size:30
Alignment explanation
Indices: 106135388--106135472 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 30
106135378 ACTTTTCTCA
*
106135388 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
** *
106135418 ACTAGCCACACCTTTTCCATTACCTACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
106135448 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-TTCCACCACCA
106135473 CTTGTACCTA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 3 0.07
30 42 0.93
ACGTcount: A:0.26, C:0.47, G:0.04, T:0.24
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:106135999 original size:23 final size:23
Alignment explanation
Indices: 106135962--106136091 Score: 72
Period size: 23 Copynumber: 5.5 Consensus size: 23
106135952 CCTTTTTTGT
106135962 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
106135985 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
106136007 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* *
106136030 TATTACGTATATATATATT-ATACTA
1 TATTA--TATATAT-TCTTAATATTA
* *
106136055 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
106136080 TATTATTTATAT
1 TATTATATATAT
106136092 ATATTTTTTT
Statistics
Matches: 81, Mismatches: 15, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
21 3 0.04
22 15 0.19
23 26 0.32
24 6 0.07
25 26 0.32
26 2 0.02
27 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:106136055 original size:25 final size:25
Alignment explanation
Indices: 106135976--106136178 Score: 91
Period size: 25 Copynumber: 8.2 Consensus size: 25
106135966 ATTATATTTC
* * *
106135976 TTAATATTATATTATATATAT-TCT
1 TTAATACTATATTATGTATATATAT
* *
106136000 TT--TAATATATTAGGTATAT-T-T
1 TTAATACTATATTATGTATATATAT
* * *
106136021 TAAATTCTATATTACGTATATATAT
1 TTAATACTATATTATGTATATATAT
* *
106136046 ATT-ATACTATTTTATGTATATATCT
1 -TTAATACTATATTATGTATATATAT
* *
106136071 TTAATATTATATTATTTATATATATTTTT
1 TTAATACTATATTATGTATATATA----T
** * *
106136100 TTACATGTTATCTTATGTATATAT-C
1 TTA-ATACTATATTATGTATATATAT
* * *
106136125 TT-A-ACTATATTATTTATGTATTT
1 TTAATACTATATTATGTATATATAT
* * *
106136148 TTAACACTATATTATGTACATATTT
1 TTAATACTATATTATGTATATATAT
106136173 TTAATA
1 TTAATA
106136179 TTATCACGTA
Statistics
Matches: 135, Mismatches: 30, Indels: 27
0.70 0.16 0.14
Matches are distributed among these distances:
21 2 0.01
22 28 0.21
23 17 0.13
24 6 0.04
25 60 0.44
26 1 0.01
29 4 0.03
30 17 0.13
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TTAATACTATATTATGTATATATAT
Found at i:106136141 original size:26 final size:26
Alignment explanation
Indices: 106136056--106136145 Score: 83
Period size: 26 Copynumber: 3.3 Consensus size: 26
106136046 ATTATACTAT
*
106136056 TTTATGTATATATCTTTAATATTATATTA
1 TTTATGTATATATC-TT-A-ACTATATTA
* * * * *
106136085 TTTATATATATTTTTTTAC-ATGTTA
1 TTTATGTATATATCTTAACTATATTA
106136110 TCTTATGTATATATCTTAACTATATTA
1 T-TTATGTATATATCTTAACTATATTA
106136137 TTTATGTAT
1 TTTATGTAT
106136146 TTTTAACACT
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
25 6 0.12
26 23 0.48
27 6 0.12
28 2 0.04
29 11 0.23
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (26 bp):
TTTATGTATATATCTTAACTATATTA
Found at i:106136352 original size:16 final size:15
Alignment explanation
Indices: 106136328--106136375 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
106136318 TAATTATTAT
*
106136328 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
106136344 TATTTTAATATTTTA
1 TATTTTAATATTTTA
106136359 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
106136375 T
1 T
106136376 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:106136363 original size:7 final size:8
Alignment explanation
Indices: 106136328--106136379 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
106136318 TAATTATTAT
*
106136328 TATTCTAA
1 TATTTTAA
*
106136336 TATTTTGA
1 TATTTTAA
106136344 TATTTTAA
1 TATTTTAA
106136352 TATTTT-A
1 TATTTTAA
106136359 TATTTTATA
1 TATTTTA-A
*
106136368 TATTTTAT
1 TATTTTAA
106136376 TATT
1 TATT
106136380 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:106144693 original size:69 final size:69
Alignment explanation
Indices: 106144519--106144693 Score: 217
Period size: 70 Copynumber: 2.5 Consensus size: 69
106144509 GCTTTCCAAG
* ** *
106144519 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
106144584 TTTT
66 TTTT
* ** * *
106144588 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-
106144653 TGTTTT
64 TGTTTT
** *
106144659 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
106144694 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 31 0.34
70 55 0.60
71 5 0.05
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Done.