Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 327 of 333
Found at i:106144828 original size:74 final size:74
Alignment explanation
Indices: 106144711--106144974 Score: 317
Period size: 74 Copynumber: 3.5 Consensus size: 74
106144701 TTTGTTTTTC
*
106144711 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGA-GTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
106144775 GTTGTTAAAA
66 GTT-TTAAAA
** *
106144785 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
106144850 GTTTTCAAAAAAA
66 GTTTT----AAAA
*
106144863 AAAATCAACTTAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAGCTGAGGT-ATTT-
1 AAAATCAAC-T--C--ATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC-GCTGAGGTAATTTC
*
106144925 AATTTCTGTTTT--CA
59 AATTTCTGTTTTAAAA
106144939 AAAAT-AACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
106144975 GGCTCACATA
Statistics
Matches: 169, Mismatches: 9, Indels: 28
0.82 0.04 0.14
Matches are distributed among these distances:
70 26 0.15
72 1 0.01
74 48 0.28
75 21 0.12
76 6 0.04
78 13 0.08
79 1 0.01
81 1 0.01
82 13 0.08
83 31 0.18
84 8 0.05
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAA
Found at i:106145014 original size:14 final size:14
Alignment explanation
Indices: 106144995--106145022 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106144985 CTGAGGTCTT
106144995 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
106145009 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
106145023 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:106145129 original size:72 final size:72
Alignment explanation
Indices: 106145028--106145293 Score: 318
Period size: 72 Copynumber: 3.6 Consensus size: 72
106145018 TGTTCGTAAA
* *
106145028 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
106145093 TGTTTTC
66 TGTTTTC
* ** * *
106145100 AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
106145165 TGTTTTC
66 TGTTTTC
*
106145172 AAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTT
1 ----AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTT
*
106145236 CAATTTCTGTTTTAAAAA
59 CAATTTCTGTTTT----C
* * *
106145254 AAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCTTCAG
1 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAG
106145294 ATTACACATT
Statistics
Matches: 165, Mismatches: 17, Indels: 17
0.83 0.09 0.09
Matches are distributed among these distances:
72 65 0.39
75 1 0.01
76 35 0.21
78 63 0.38
79 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (72 bp):
AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTC
Found at i:106145253 original size:76 final size:75
Alignment explanation
Indices: 106145009--106145293 Score: 364
Period size: 78 Copynumber: 3.8 Consensus size: 75
106144999 ATTTCTGTTC
*
106145009 TTCAATTTCTGTTCGT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTCAATTTCTGTT-TTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
106145073 GCTGAGGTAAT
65 GCTGAGGTATT
* * * ** *
106145084 TTCAATTTCTGTTTT---CAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTCAATTTCTGTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
*
106145146 TTGAGGTATT
66 CTGAGGTATT
*
106145156 TTCAATTTCTGTTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCA
1 TTCAATTTCTGTTTT-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---A
*
106145220 CATGCTGAGGTATT
62 CACGCTGAGGTATT
* *
106145234 TTCAATTTCTGTTTTAAAAAAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCTTCAG
1 TTCAATTTCTGTTTT-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
106145294 ATTACACATT
Statistics
Matches: 182, Mismatches: 20, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
72 64 0.35
74 1 0.01
75 14 0.08
76 35 0.19
78 67 0.37
79 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (75 bp):
TTCAATTTCTGTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTATT
Found at i:106145563 original size:72 final size:73
Alignment explanation
Indices: 106145446--106145587 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
106145436 TCAAAATCAG
* * *
106145446 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
106145510 AATTTCAA
66 AATTTCAA
* *
106145518 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
106145583 AATTT
66 AATTT
106145588 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:106145700 original size:71 final size:72
Alignment explanation
Indices: 106145583--106145807 Score: 245
Period size: 73 Copynumber: 3.1 Consensus size: 72
106145573 TCGTTTTTTT
** * * *
106145583 AATTTATGTTTCAAAAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTCA-AGACGCTGAG
1 AATTTATG-TTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAG
106145647 GTAATTTC
65 GTAATTTC
* **
106145655 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAG
** *
106145720 GTGGTTTT
65 GTAATTTC
* * * **
106145728 AATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTG
1 AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAGACACGCTG
*
106145793 AGGTATTTTC
63 AGGTAATTTC
106145803 AATTT
1 AATTT
106145808 CTGGTTTTCA
Statistics
Matches: 126, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
71 39 0.31
72 7 0.06
73 58 0.46
74 1 0.01
75 20 0.16
76 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (72 bp):
AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGG
TAATTTC
Found at i:106145744 original size:73 final size:71
Alignment explanation
Indices: 106145579--106145778 Score: 247
Period size: 73 Copynumber: 2.8 Consensus size: 71
106145569 ATTTTCGTTT
** * * *
106145579 TTTTAATTTATGTTTCAAAAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACGCT
1 TTTTAATTTATG-TTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCT
106145644 GAGGTAA
65 GAGGTAA
* * **
106145651 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--ACACGC
**
106145716 TGAGGTGG
64 TGAGGTAA
* * *
106145724 TTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTAATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
106145779 TGGCTCACAC
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
71 39 0.36
72 10 0.09
73 59 0.55
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (71 bp):
TTTTAATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCTG
AGGTAA
Found at i:106145817 original size:14 final size:14
Alignment explanation
Indices: 106145798--106145832 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
106145788 CGCTGAGGTA
106145798 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
*
106145812 TTTTCAATTTCTGT
1 TTTTCAATTTCTGG
106145826 TTTTCAA
1 TTTTCAA
106145833 AAATCGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.09, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:106145868 original size:162 final size:162
Alignment explanation
Indices: 106145651--106146145 Score: 656
Period size: 162 Copynumber: 3.0 Consensus size: 162
106145641 GCTGAGGTAA
* *
106145651 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
** * * * * *
106145716 TGAGGTGGTTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTG
66 TGAGGTAATTTCAATTTATGTTAATCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTAG
106145781 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
131 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
* * *
106145813 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* ** *
106145878 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 TGAGGTAATTTCAATTTATGTTAATCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTAG
* *
106145943 GCTCACATGCTGAGGTCTTTTCAATTTCT-GT
131 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
** *
106145974 TCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACA
1 T-TTCAATTTCTGTT--TATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* ** *
106146039 CGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
63 CGCTGAGGTAATTTCAA-TT-T-ATGTTAATCAAAAATTAACTCATATTGCGAGAGGTGAGTTGA
* *
106146104 GCCTCAGG---ACACGCTGAGGTATTTTTAATTTCTGTT
125 GCCT-AGGCTCACACGCTGAGGTATTTTCAATTTCTGGT
106146140 TTTCAA
1 TTTCAA
106146146 AAATCAACTC
Statistics
Matches: 293, Mismatches: 32, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
161 3 0.01
162 157 0.54
164 59 0.20
165 29 0.10
166 3 0.01
167 40 0.14
168 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (162 bp):
TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAATTTCAATTTATGTTAATCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTAG
GCTCACACGCTGAGGTATTTTCAATTTCTGGT
Found at i:106145917 original size:235 final size:228
Alignment explanation
Indices: 106145438--106146180 Score: 751
Period size: 240 Copynumber: 3.2 Consensus size: 228
106145428 CTACTTTTTC
* * * *
106145438 AAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTCAATTTAT
** * *
106145503 GTGT--T-TTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
65 GT-TCATCAAAAATT-AACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
** * *
106145565 TTCAATTTTCGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATACTGCGAGAAGTGAGTTG
128 TTCAA-TTTC-TGGTTTTAATTT-TGTTT--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
106145630 AGCCTC-AAGACGCTGAGGTAATTTCAATTTTTGTTTGTCA
188 AGCCTCGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
*
106145670 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTT-AATTTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGT-ATTTTCAATTTA
* *
106145734 TGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTA
64 TGTTCATCAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTA
** *
106145798 TTTTCAATTTCTGGTTTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTG
126 TTTTCAATTTCTGGTTTT-AATTT-TG-TTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
106145863 AGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
188 AGCCTC-GGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
* * *
106145905 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTCAATTT
* * *
106145970 CTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAG
63 ATG---TTC-A-------TC-----AAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCAG
*
106146035 GACACGCTGAGGTAATTTCAATTTCT-GTTGTTAA--------AAAAAAATCAACTCATATTGCG
112 GACACGCTGAGGTATTTTCAATTTCTGGTT-TTAATTTTGTTTAAAAAAATCAACTCATATTGCG
* * *
106146091 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTCTGTTTTTCA
176 AGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
*
106146145 AAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
106146181 TGGGTTCACA
Statistics
Matches: 437, Mismatches: 41, Indels: 58
0.82 0.08 0.11
Matches are distributed among these distances:
231 1 0.00
232 58 0.13
233 73 0.17
234 17 0.04
235 90 0.21
236 4 0.01
237 18 0.04
240 106 0.24
241 1 0.00
248 2 0.00
250 5 0.01
251 26 0.06
253 34 0.08
254 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (228 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTCAATTTATG
TTCATCAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
AATTTCTGGTTTTAATTTTGTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
ACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
Found at i:106145932 original size:73 final size:74
Alignment explanation
Indices: 106145813--106145974 Score: 245
Period size: 73 Copynumber: 2.2 Consensus size: 74
106145803 AATTTCTGGT
* * *
106145813 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GACACG
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACG
106145877 CTGAGGTAA
66 CTGAGGTAA
* *
106145886 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACAC
**
106145951 GCTGAGGTCT
65 GCTGAGGTAA
106145961 TTTCAATTTCTGTT
1 TTTCAATTTCTGTT
106145975 CTTCAATTTC
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
73 55 0.69
75 25 0.31
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (74 bp):
TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACG
CTGAGGTAA
Found at i:106145981 original size:14 final size:14
Alignment explanation
Indices: 106145962--106145989 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106145952 CTGAGGTCTT
106145962 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
106145976 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
106145990 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:106146056 original size:89 final size:87
Alignment explanation
Indices: 106145887--106146145 Score: 265
Period size: 76 Copynumber: 3.1 Consensus size: 87
106145877 CTGAGGTAAT
* * * *
106145887 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
1 TTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACACG
**
106145952 CTGAGGTCTTTTCAATTTCTGTTC
64 CTGAGGTAATTTCAATTTCTGTTC
*
106145976 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGG-ACAC
1 TTCAATTTCTGTTCGT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACAC
*
106146040 GCTGAGGTAATTTCAATTTCTGTTG
63 GCTGAGGTAATTTCAATTTCTGTTC
*
106146065 TT-AA----------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGC
1 TTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACGC
* * *
106146118 TGAGGTATTTTTAATTTCTGTTT
65 TGAGGTAATTTCAATTTCTGTTC
106146141 TTCAA
1 TTCAA
106146146 AAATCAACTC
Statistics
Matches: 153, Mismatches: 13, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
76 69 0.45
77 2 0.01
88 2 0.01
89 42 0.27
91 36 0.24
92 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (87 bp):
TTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCT
GAGGTAATTTCAATTTCTGTTC
Found at i:106146199 original size:76 final size:75
Alignment explanation
Indices: 106145976--106146180 Score: 317
Period size: 76 Copynumber: 2.7 Consensus size: 75
106145966 ATTTCTGTTC
*
106145976 TTCAATTTCTGTTCG-TAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACAC
1 TTCAATTTCTGTT-GTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
106146040 GCTGAGGTAAT
65 GCTGAGGTATT
106146051 TTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTCAATTTCTGTTGTT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
106146116 GCTGAGGTATT
65 GCTGAGGTATT
* ** *
106146127 TTTAATTTCTGTT-TT-TCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 TTCAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
106146181 TGGGTTCACA
Statistics
Matches: 122, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
73 36 0.30
74 1 0.01
75 16 0.13
76 69 0.57
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (75 bp):
TTCAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTATT
Found at i:106146973 original size:29 final size:29
Alignment explanation
Indices: 106146890--106147061 Score: 254
Period size: 29 Copynumber: 5.8 Consensus size: 29
106146880 ACTTTTCTCA
106146890 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACT-CTTTTCCACCACCAACTCC
*
106146920 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCAC-TCTTTTCCACCACCAACTCC
* *
106146950 ATTAGCCACTCTTTTCCACCACCAACTAC
1 ACTAGCCACTCTTTTCCACCACCAACTCC
* *
106146979 ACTAGCCACACCTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTCCACCACCAACTCC
106147008 ACTAGCCACTCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTCCACCACCAACTCC
* *
106147037 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCAC-TCTTTTCCACCACCA
106147062 CTTGTACCTA
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
29 79 0.62
30 49 0.38
ACGTcount: A:0.26, C:0.49, G:0.03, T:0.22
Consensus pattern (29 bp):
ACTAGCCACTCTTTTCCACCACCAACTCC
Found at i:106147023 original size:58 final size:58
Alignment explanation
Indices: 106146890--106147061 Score: 299
Period size: 58 Copynumber: 2.9 Consensus size: 58
106146880 ACTTTTCTCA
106146890 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACT-CTTTTCCACCACCAACTCCACTAGCCACACC-TTTCCACCACCAACTCC
* *
106146950 ATTAGCCACTCTTTTCCACCACCAACTACACTAGCCACACCTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTCCACCACCAACTCCACTAGCCACACCTTTCCACCACCAACTCC
106147008 ACTAGCCACTCTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTCCACCACCAACTCCACTAGCCACACCTT-TCCACCACCA
106147062 CTTGTACCTA
Statistics
Matches: 107, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
58 58 0.54
59 40 0.37
60 9 0.08
ACGTcount: A:0.26, C:0.49, G:0.03, T:0.22
Consensus pattern (58 bp):
ACTAGCCACTCTTTTCCACCACCAACTCCACTAGCCACACCTTTCCACCACCAACTCC
Found at i:106147641 original size:25 final size:25
Alignment explanation
Indices: 106147613--106147751 Score: 97
Period size: 25 Copynumber: 5.5 Consensus size: 25
106147603 ATATTACGTA
*
106147613 TATATATATTTTATACTATTTTATG
1 TATATATATTTTATACTATATTATG
* * * *
106147638 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATACTATATTATG
* * *
106147663 TATATATATATTTTTAC-ATGTTATCT
1 TATATATAT-TTTATACTATATTAT-G
*
106147689 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATG
* *
106147715 TATGTAT-TTTTAACACTATATTATG
1 TATATATATTTT-ATACTATATTATG
*
106147740 TACATAT-TTTTA
1 TATATATATTTTA
106147752 ATATTATCAC
Statistics
Matches: 89, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
23 3 0.03
24 6 0.07
25 54 0.61
26 11 0.12
27 8 0.09
28 7 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATG
Found at i:106147658 original size:52 final size:52
Alignment explanation
Indices: 106147536--106147758 Score: 161
Period size: 52 Copynumber: 4.5 Consensus size: 52
106147526 TTTTTTTTGT
* * *
106147536 TATTAT-TATATTTC-TTAATATTATATTA--TATACAT-TCTTTTA-A-TA
1 TATTATGTATATATCTTTAATATTATATTATGTATATATATATTTTATACTA
* * * *
106147581 TATTAGGTATAT-T-TTAAATTTTATATTACGTATATATATATTTTATACTA
1 TATTATGTATATATCTTTAATATTATATTATGTATATATATATTTTATACTA
* *
106147631 TTTTATGTATATATCTTTAATATTATATTATTTATATATATATTTT-TACATGTTA
1 TATTATGTATATATCTTTAATATTATATTATGTATATATATATTTTATAC----TA
* * * * *
106147686 TCTTATGTATATATC-TT-A-ACTATATTATGTATGTAT-T-TTTAACACTA
1 TATTATGTATATATCTTTAATATTATATTATGTATATATATATTTTATACTA
* *
106147733 TATTATGTACATATTTTTAATATTAT
1 TATTATGTATATATCTTTAATATTAT
106147759 CACGTATTTT
Statistics
Matches: 140, Mismatches: 21, Indels: 29
0.74 0.11 0.15
Matches are distributed among these distances:
45 18 0.13
46 5 0.04
47 20 0.14
48 8 0.06
49 2 0.01
50 19 0.14
51 7 0.05
52 42 0.30
53 1 0.01
54 2 0.01
55 16 0.11
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (52 bp):
TATTATGTATATATCTTTAATATTATATTATGTATATATATATTTTATACTA
Found at i:106147663 original size:30 final size:28
Alignment explanation
Indices: 106147601--106147702 Score: 77
Period size: 27 Copynumber: 3.7 Consensus size: 28
106147591 ATTTTAAATT
* * * *
106147601 TTATATTACGTATATATATATT-TTATA
1 TTATTTTATGTATATATCTTTTATTATA
*
106147628 CTATTTTATGTATATATCTTTAATATTATA
1 TTATTTTATGTATATATCTTT--TATTATA
* * *
106147658 TTA-TTTATATATATAT-TTTTA-CATG
1 TTATTTTATGTATATATCTTTTATTATA
*
106147683 TTATCTTATGTATATATCTT
1 TTATTTTATGTATATATCTT
106147703 AACTATATTA
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
25 5 0.08
26 13 0.22
27 18 0.31
28 3 0.05
29 13 0.22
30 7 0.12
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (28 bp):
TTATTTTATGTATATATCTTTTATTATA
Found at i:106147757 original size:20 final size:20
Alignment explanation
Indices: 106147732--106147787 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
106147722 TTTTAACACT
106147732 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* * *
106147752 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
106147771 TTATATATGTACATATT
1 ATAT-TATGTACATATT
106147788 GATGTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:106161646 original size:69 final size:70
Alignment explanation
Indices: 106161526--106161699 Score: 212
Period size: 69 Copynumber: 2.5 Consensus size: 70
106161516 CTTTCCAAGG
**
106161526 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
106161589 T-TTTT
65 TGTTTT
** * *
106161594 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
106161659 TGTTTT
65 TGTTTT
** * *
106161665 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
106161700 TTTAATTTTG
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
69 85 0.92
70 3 0.03
71 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:106161960 original size:70 final size:70
Alignment explanation
Indices: 106161703--106162321 Score: 873
Period size: 69 Copynumber: 8.8 Consensus size: 70
106161693 TAAGCCTTTT
* **
106161703 AATTT-TGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-GACACG-TGAG
106161766 GTAATTTC
63 GTAATTTC
*
106161774 AATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTGTT-TT-CAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-GACACG-TGA
106161839 GGTAATTTC
62 GGTAATTTC
* *
106161848 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCA-ACACGTGAGGTA
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTGAGGTA
*
106161912 TTTTC
66 ATTTC
**
106161917 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--ACACGCTGAGG
1 AATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACG-TGAGG
106161980 TAATTTC
64 TAATTTC
**
106161987 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGTGAGGT-
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTGAGGTA
106162051 -TTTC
66 ATTTC
* ** **
106162055 AATTTCTTTTTTTGTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGTGAGGT
1 AATTTC-TGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTGAGGT
106162120 AATTTC
65 AATTTC
*
106162126 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACACG-TGAGG
*
106162191 TATTTTC
64 TAATTTC
106162198 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAG-AATGAGTTGAGCCTCA-AGCACGTGAGGT
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGA-CACGTGAGGT
106162261 -ATTTC
65 AATTTC
*
106162266 AATTTCTGTTTT-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACAC
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACAC
106162322 ACGTGAGTAT
Statistics
Matches: 506, Mismatches: 26, Indels: 35
0.89 0.05 0.06
Matches are distributed among these distances:
67 21 0.04
68 45 0.09
69 130 0.26
70 113 0.22
71 44 0.09
72 86 0.17
73 2 0.00
74 65 0.13
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (70 bp):
AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTGAGGTA
ATTTC
Found at i:106162009 original size:139 final size:140
Alignment explanation
Indices: 106161703--106162334 Score: 917
Period size: 139 Copynumber: 4.5 Consensus size: 140
106161693 TAAGCCTTTT
* **
106161703 AATTT-TGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-GACACG-TGAG
* * *
106161766 GTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
63 GTATTTTCAATTTCTGTT-TTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCA--A
106161831 CACGCTGAGGTAATTTC
125 CACG-TGAGGTAATTTC
*
106161848 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCA-ACACGTGAGGTA
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTGAGGTA
*
106161912 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-ACACGCT
66 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAACACG-T
106161976 GAGGTAATTTC
130 GAGGTAATTTC
* **
106161987 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGTGAGG--
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTGAGGTA
* *** *
106162050 TTTTCAATTTCTTTTTTTGTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGT
66 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCA-ACACGT
106162115 GAGGTAATTTC
130 GAGGTAATTTC
106162126 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACACG-TGAGG
106162191 TATTTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGA-ATGAGTTGAGCCTCAAGCAC
64 TATTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAA-CAC
106162254 GTGAGGT-ATTTC
128 GTGAGGTAATTTC
106162266 AATTTCTGTTTT-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACACGTGA-G
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG--ACACGTGAGG
106162329 TATTTT
64 TATTTT
106162335 TCAAAATTCA
Statistics
Matches: 452, Mismatches: 23, Indels: 31
0.89 0.05 0.06
Matches are distributed among these distances:
138 62 0.14
139 167 0.37
140 45 0.10
141 29 0.06
142 61 0.13
143 37 0.08
144 5 0.01
145 14 0.03
146 32 0.07
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (140 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTGAGGTA
TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAACACGTG
AGGTAATTTC
Found at i:106162205 original size:211 final size:211
Alignment explanation
Indices: 106161703--106163777 Score: 2675
Period size: 211 Copynumber: 9.9 Consensus size: 211
106161693 TAAGCCTTTT
* ** *
106161703 AATTT-TGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTG-TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* *
106161767 TAATTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGAC
65 TATTTTCAATTTCTGTT-TT-CAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-GAC
* *
106161832 ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCC
127 ACGTTGAGGT-ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
*
106161897 TCA-ACACGTGAGGTATTTTC
191 TCAGACACGTGAGGTAATTTC
**
106161917 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC---ACACGCTGAG
1 AATTTCTGTTTTC--AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
* **
106161979 GTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACAC
64 GTATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACAC
* * **
106162044 G-TGAGGT-TTTCAATTTCTTTTTTTGTAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
129 GTTGAGGTATTTCAATTTC-TGTTTT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
106162106 CAGACACGTGAGGTAATTTC
192 CAGACACGTGAGGTAATTTC
*
106162126 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
106162191 TATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAG-AATGAGTTGAGCCTCA-AGCAC
65 TATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGA-CAC
106162254 G-TGAGGTATTTCAATTTCTGTTTT-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
129 GTTGAGGTATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * *
106162317 GACAC---ACGTGA-GT-
194 GACACGTGAGGTAATTTC
106162330 -A----T-TTTTCAAAAT----TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGT
1 AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
* * *
106162384 AATTTCAATTTCTG-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTT--G----A-AC-CTT
66 ATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGT
* *
106162440 TTA---ATTTC---TACT-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
131 TGAGGTATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AG
*
106162498 ACACGTGAGGTATTTTC
195 ACACGTGAGGTAATTTC
106162515 AATTTCTGTTTT-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
106162578 TATTTTCAATTTCTGTTTTCAAATTAAACAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
65 TATTTTCAATTTCTGTTTTCAAA--AATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGAC
106162643 ACGTTGAGGTAATTTCAATTTCTG-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
127 ACGTTGAGGT-ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
*
106162707 TCAGACACGTTGAGGTATTTTC
191 TCAGACACG-TGAGGTAATTTC
*
106162729 AATTTCTG--TTCAAAAATTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
1 AATTTCTGTTTTC-AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
**
106162792 TA-TTTCAATTTCTGTTTTCAAATTTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
65 TATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACAC
106162856 GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
129 GTTGAGGT-ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
106162921 AAGACACGTGAGGTAATTTC
193 -AGACACGTGAGGTAATTTC
*
106162941 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
106163006 TTTTCAATTTCTCAATTTCTG--TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
65 ---T--ATTT-TCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-
106163069 AGACACGTTGAGGTATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAG-AA--AGTTGA
123 AGACACGTTGAGGTATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA
106163131 GCCTC-GACACGTGAGGTAATTTC
188 GCCTCAGACACGTGAGGTAATTTC
*
106163154 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
106163219 TATTTTCAATTTCTG--TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
65 TATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACAC
*
106163282 GTTGAGGTATTTTAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-
129 GTTGAGGTATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
*
106163346 GACACGTGAGGTATTTTC
194 GACACGTGAGGTAATTTC
** *
106163364 AATTTCTGTTTTCAAAA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GGCACGCTGAGGT
1 AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
106163426 AATTTTTCAATTTCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GACA
66 -A-TTTTCAATTTCTGTTTTCAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACA
**
106163490 CGCTTGAGGTAATTTCAATTTCTGTTTTCAAAAATT-AACTCATATTGCGAGAGGTGAGTTGAGC
128 CG-TTGAGGT-ATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGC
106163554 CTC-GACACGTTGAGGTTTTTCAATTTCTGTTTTC
190 CTCAGACACG-TGAGG----T-AA-------TTTC
** *
106163588 AATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTCAAGACACGCTGA
1 AATTTCTGTT--T-TCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGA
* ** *
106163652 GGTATTTTTAATTTCTGTTTTCAAAAATCGAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAC
63 GGTATTTTCAATTTCTGTTTTCAAAAATC-AACTCATATTGCGAGAAATGAGTTGAGCCTCAGAC
* **
106163717 ACGCTGAGGTAATTTCAATTTCT-TTTTCAAAAATT-AACTCATATTGCGAGAGGTGAGTTGA
127 ACGTTGAGGT-ATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGA
106163778 AAAATCAACT
Statistics
Matches: 1696, Mismatches: 64, Indels: 190
0.87 0.03 0.10
Matches are distributed among these distances:
178 4 0.00
179 41 0.02
180 6 0.00
182 5 0.00
183 3 0.00
184 2 0.00
185 3 0.00
186 3 0.00
190 6 0.00
191 30 0.02
192 27 0.02
193 36 0.02
195 55 0.03
196 7 0.00
197 1 0.00
198 35 0.02
199 1 0.00
200 1 0.00
203 1 0.00
205 2 0.00
206 17 0.01
207 124 0.07
208 120 0.07
209 83 0.05
210 95 0.06
211 249 0.15
212 76 0.04
213 189 0.11
214 134 0.08
215 13 0.01
216 37 0.02
217 4 0.00
218 40 0.02
219 56 0.03
220 2 0.00
221 10 0.01
224 14 0.01
226 41 0.02
227 88 0.05
228 23 0.01
229 12 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (211 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
ATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGT
TGAGGTATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGA
CACGTGAGGTAATTTC
Found at i:106162516 original size:125 final size:128
Alignment explanation
Indices: 106161789--106163552 Score: 1393
Period size: 139 Copynumber: 12.8 Consensus size: 128
106161779 CTGTTGTTAA
* *
106161789 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGT-ATTTCAATTTC
* * *
106161854 TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAACACGTGAGGTATTTTCAA
64 TG-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG-----ACACGT--TGTAATTTC-A
*
106161919 TTTCTGTTTTC
120 -TACT-TTTTC
* **
106161930 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC---ACACGCTGAGGTAATTTCAATTT
1 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGT-ATTTCAATTT
* ** *
106161992 CTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGTGAGGTTTTCAA
63 CTG-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTT--G----AGACAC-----GTTGT-AA
* *
106162057 TTTC-T-TTTTTTGT
115 TTTCATACTTTTT-C
**
106162070 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGTGAGGTAATTTCAATTTCT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGT-ATTTCAATTTCT
*
106162133 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
65 G-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTT--G-----AGACACGTT---GTAATTTC
*
106162198 AATTTCTGTTTTC
119 -A-TACT-TTTTC
*
106162211 AAAAATCAACTCATATTGCGAG-AATGAGTTGAGCCTCAAG-CACGTGAGGTATTTCAATTTCTG
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTCAATTTCTG
* * * ** *
106162274 TTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAG-C-C-TCAGACACACGTGAGTA-TTTT
66 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGACACGT-TG-TA-ATTTCA-TACTTTT
106162335 TC
127 TC
106162337 AAAA-T----TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTAATTTCAATTTCT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGT-ATTTCAATTTCT
*
106162397 GTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA-AC-C-TTTTAATTTC-TACTTTTTC
65 GTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGACACGTTGTAATTTCATACTTTTTC
106162457 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTCAATTTCT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTA-TTTCAATTTCT
* * *
106162522 GTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTCAA
65 GTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT--G-----AGACACGT--TGTAATTTC-A
*
106162587 TTTCTGTTTTC
120 -TACT-TTTTC
106162598 -AAATTAAACAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAAT
1 AAAATT---CAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGT-ATTTCAAT
*
106162662 TTCTGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTT
61 TTCTGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT--G----AGACACGTT---GTAATT
*
106162727 TCA-ATTTCTGTTC
117 TCATACTT-T-TTC
106162740 AAAAATT-AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCAATTTC
1 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTTCAATTTC
*
106162804 TGTTTTCAAATTTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
64 TG-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTT--G-----AGACACGTT---GTAATTT
*
106162869 CAATTTCTGTTTTC
118 C-A-TACT-TTTTC
106162883 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTAATTTCAATTTCT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGT-ATTTCAATTTCT
106162948 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTTTTCAA
65 G-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTT--G-----AGACACGTT---G---T-AA
*
106163013 TTTC-TCAATTTCTGTTC
115 TTTCAT--ACTT-T-TTC
106163030 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTTCAATTTCT
* * * *
106163095 GTTTTCAAAATTCAACTCATATTGCGAGAAAGTTGAGCCT-CGACACGTGAGGTAATTTCAATTT
65 G-TTTCAAAATTCAACTCATATTGCGAGAAA--TGAG-TTGAGACACGT--TGTAATTTC-A-TA
106163159 CTGTTTTC
122 CT-TTTTC
106163167 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTA-TTTCAATTTC
* *
106163232 TG-TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTA
64 TGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT--G-----AGACACGTT---GTAATTTC
*
106163296 ATTTCTGTTTTC
119 A-TACT-TTTTC
106163308 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC--GACACGTGAGGTATTTTCAATTTCT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTA-TTTCAATTTCT
** * *
106163371 GTTTTCAAAA--CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACGCTGAGGTAATTTTTC
65 G-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA-----GACACG-T--TGTAA--TTTC
*
106163434 AATTTCTGTTTTC
119 -A-TACT-TTTTC
106163447 AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC--GACACGCTTGAGGTAATTTCAATT
1 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG--TGAGGT-ATTTCAATT
**
106163510 TCTGTTTTCAAAAATT-AACTCATATTGCGAGAGGTGAGTTGAG
62 TCTG-TTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAG
106163553 CCTCGACACG
Statistics
Matches: 1418, Mismatches: 78, Indels: 255
0.81 0.04 0.15
Matches are distributed among these distances:
119 2 0.00
120 10 0.01
121 15 0.01
122 19 0.01
123 10 0.01
124 53 0.04
125 89 0.06
126 9 0.01
127 3 0.00
128 3 0.00
129 2 0.00
130 1 0.00
131 2 0.00
132 3 0.00
133 3 0.00
134 5 0.00
135 4 0.00
136 37 0.03
137 76 0.05
138 95 0.07
139 189 0.13
140 174 0.12
141 115 0.08
142 111 0.08
143 167 0.12
144 102 0.07
145 7 0.00
146 3 0.00
147 98 0.07
148 6 0.00
149 4 0.00
150 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (128 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTCAATTTCTG
TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGACACGTTGTAATTTCATACTTTTTC
Found at i:106162847 original size:71 final size:71
Alignment explanation
Indices: 106162452--106163589 Score: 1726
Period size: 71 Copynumber: 16.1 Consensus size: 71
106162442 AATTTCTACT
106162452 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTCA
106162516 ATTTCTG
65 ATTTCTG
106162523 TTTT-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTCA
106162586 ATTTCTG
65 ATTTCTG
106162593 TTTTC-AAATTAAACAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATT
1 TTTTCAAAATT---CAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATT
106162657 TCAATTTCTG
62 TCAATTTCTG
106162667 -TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACACGTTGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTCA
106162730 ATTTCTG
65 ATTTCTG
*
106162737 --TTCAAAAATT-AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCA
1 TTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCA
106162799 ATTTCTG
65 ATTTCTG
*
106162806 TTTTCAAATTTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCA
106162871 ATTTCTG
65 ATTTCTG
106162878 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCA
106162942 ATTTCTG
65 ATTTCTG
106162949 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-TTTCAA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAA
*
106163013 TTTCTCAATT
66 -TT-TC--TG
106163023 TCTGTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTC
1 T-T-TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTC
106163088 AATTTCTG
64 AATTTCTG
106163096 TTTTCAAAATTCAACTCATATTGCGAG-AA--AGTTGAGCCTC--GACACG-TGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCA
106163155 ATTTCTG
65 ATTTCTG
106163162 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTCA
106163227 ATTTCTG
65 ATTTCTG
*
106163234 --TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTAA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAA
106163297 TTTCTG
66 TTTCTG
106163303 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC--GACACG-TGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTCA
106163365 ATTTCTG
65 ATTTCTG
** * *
106163372 TTTTCAAAA--CAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GGCACGCTGAGGTAATTTTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-A--TTT
106163433 CAATTTCTG
63 CAATTTCTG
106163442 TTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC--GACACGCTTGAGGTAATTT
1 TTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TTGAGGT-ATTT
106163505 CAATTTCTG
63 CAATTTCTG
** *
106163514 TTTTCAAAAATT-AACTCATATTGCGAGAGGTGAGTTGAGCCTC--GACACGTTGAGGTTTTTCA
1 TTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCA
106163576 ATTTCTG
65 ATTTCTG
106163583 TTTTCAA
1 TTTTCAA
106163590 TTTCTGTTCG
Statistics
Matches: 1009, Mismatches: 18, Indels: 83
0.91 0.02 0.07
Matches are distributed among these distances:
65 6 0.01
66 46 0.05
67 37 0.04
68 26 0.03
69 113 0.11
70 216 0.21
71 269 0.27
72 114 0.11
73 81 0.08
74 33 0.03
75 4 0.00
76 58 0.06
77 6 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (71 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAA
TTTCTG
Found at i:106162961 original size:283 final size:280
Alignment explanation
Indices: 106162342--106163777 Score: 1983
Period size: 283 Copynumber: 5.1 Consensus size: 280
106162332 TTTTCAAAAT
106162342 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTAATTTCAATTTCTGTTTCAAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTCAAAA
* * * *
106162406 TTCAACTCATATTGCGAGAAATGAGTT--G----A-AC-C-TT---TTAATTTCTACTT-T-TTC
66 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTCAATTTCTGTTC
106162457 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTCAATTTCT
131 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTCAATTTCT
*
106162522 GTTTT-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTCA
196 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC--GACACGTGAGGTAATTTCA
106162586 ATTTCTGTTTTC-AAATTAAACAAC
259 ATTTCTGTTTTCAAAATT---CAAC
106162610 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTCAAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTCAAAA
106162675 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTCAATTTCTGTTC
66 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTCAATTTCTGTTC
106162740 AAAAATT-AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA-TTTCAATTT
131 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTTTCAATTT
*
106162803 CTGTTTTCAAATTTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATT
194 CTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC--GACACG-TGAGGTAATT
106162868 TCAATTTCTGTTTTCAAAATTCAAC
256 TCAATTTCTGTTTTCAAAATTCAAC
106162893 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTCAAA
106162957 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTTTTCAATTTCTCAAT
65 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACACGTTGAGG---T--ATTT-TCAAT
106163022 TTCTGTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-TT
123 TTCTGTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTT
106163086 TCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAG-AA--AGTTGAGCCTCGACACGTGAGGT
187 TCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGACACGTGAGGT
106163148 AATTTCAATTTCTGTTTTCAAAATTCAAC
252 AATTTCAATTTCTGTTTTCAAAATTCAAC
*
106163177 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG-TTCAAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTCAAAA
106163241 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT-AATTTCTGTT
66 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACACGTTGAGGTATTTTCAATTTCTG--
106163305 TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC--GACACGTGAGGTATTTTCAATT
128 TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTCAATT
** *
106163368 TCTGTTTTCAAAA--CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACGCTGAGGTAATTT
193 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGACACG-TGAGGTAA--T
106163431 TTCAATTTCTGTTTTCAAAAATTCAAC
255 TTCAATTTCTGTTTTC-AAAATTCAAC
106163458 TCATATTGCGAGAAATGAGTTGAGCCTC--GACACGCTTGAGGTAATTTCAATTTCTGTTTTCAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TTGAGGTAATTTCAATTTCTG-TTTC-A
**
106163521 AAATT-AACTCATATTGCGAGAGGTGAGTTGAGCCTC-GACACGTTGAGGTTTTTCAATTTCTGT
63 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGG----T--A------T
* *
106163584 TTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTCAAGACACG
116 TTTCAATTTCTGTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* * **
106163648 CTGAGGTATTTTTAATTTCTGTTTTCAAAAATCGAACTCATATTGCGAGAGGTGAGTTGAGCCTC
177 -TGAGGTATTTTCAATTTCTGTTTTCAAAATTC-AACTCATATTGCGAGAAATGAGTTGAGCCTC
106163713 GGACACGCTGAGGTAATTTCAATTTCT-TTTTCAAAAATT-AAC
240 -GACACG-TGAGGTAATTTCAATTTCTGTTTTC-AAAATTCAAC
**
106163755 TCATATTGCGAGAGGTGAGTTGA
1 TCATATTGCGAGAAATGAGTTGA
106163778 AAAATCAACT
Statistics
Matches: 1079, Mismatches: 21, Indels: 107
0.89 0.02 0.09
Matches are distributed among these distances:
268 36 0.03
269 55 0.05
271 1 0.00
274 16 0.01
275 8 0.01
276 37 0.03
277 18 0.02
278 55 0.05
279 6 0.01
280 50 0.05
281 47 0.04
282 53 0.05
283 201 0.19
284 143 0.13
285 49 0.05
286 6 0.01
287 12 0.01
289 12 0.01
290 97 0.09
291 3 0.00
292 4 0.00
293 8 0.01
294 14 0.01
295 21 0.02
296 6 0.01
297 52 0.05
298 12 0.01
299 12 0.01
300 31 0.03
301 14 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (280 bp):
TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTCAAAA
TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTCAATTTCTGTTC
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTGAGGTATTTTCAATTTCT
GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGACACGTGAGGTAATTTCAAT
TTCTGTTTTCAAAATTCAAC
Found at i:106163588 original size:13 final size:13
Alignment explanation
Indices: 106163570--106163597 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
106163560 ACGTTGAGGT
106163570 TTTTCAATTTCTG
1 TTTTCAATTTCTG
106163583 TTTTCAATTTCTG
1 TTTTCAATTTCTG
106163596 TT
1 TT
106163598 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:106163622 original size:84 final size:83
Alignment explanation
Indices: 106163502--106163675 Score: 253
Period size: 84 Copynumber: 2.1 Consensus size: 83
106163492 CTTGAGGTAA
** * *
106163502 TTTCAATTTCTGTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GACACGTTG
1 TTTCAATTTCTGTTTAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGACACGCTG
106163566 AGGT-TTTTCAATTTCTGT
65 AGGTATTTTCAATTTCTGT
106163584 TTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAAGACACGC
1 TTTCAATTTCTGTT--TAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTC-AGACACGC
*
106163649 TGAGGTATTTTTAATTTCTGT
63 TGAGGTATTTTCAATTTCTGT
106163670 TTTCAA
1 TTTCAA
106163676 AAATCGAACT
Statistics
Matches: 82, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
82 14 0.17
83 14 0.17
84 23 0.28
85 12 0.15
86 19 0.23
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (83 bp):
TTTCAATTTCTGTTTAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGACACGCTGA
GGTATTTTCAATTTCTGT
Found at i:106163772 original size:70 final size:72
Alignment explanation
Indices: 106163584--106163777 Score: 286
Period size: 72 Copynumber: 2.7 Consensus size: 72
106163574 CAATTTCTGT
**
106163584 TTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTT--TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
106163648 CTGAGGTAT
64 CTGAGGTAA
* *
106163657 TTTTAATTTCTGTTTTCAAAAATCGAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGC
1 TTTCAATTTCTGTTTTCAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
106163721 TGAGGTAA
65 TGAGGTAA
*
106163729 TTTCAATTTCT-TTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGA
1 TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
106163778 AAAATCAACT
Statistics
Matches: 112, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
70 26 0.23
71 19 0.17
72 40 0.36
73 27 0.24
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34
Consensus pattern (72 bp):
TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCT
GAGGTAA
Found at i:106163804 original size:31 final size:32
Alignment explanation
Indices: 106163745--106163806 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
106163735 TTTCTTTTTC
* *
106163745 AAAAATTAACTCATATTGCGAGAGGTGAGTTG
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTG
106163777 AAAAATCAACTCATA-TGCGAGAAGTGAGTT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTT
106163807 AGCCTGGTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 14 0.50
32 14 0.50
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (32 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTG
Found at i:106164256 original size:70 final size:73
Alignment explanation
Indices: 106164175--106164489 Score: 257
Period size: 70 Copynumber: 4.3 Consensus size: 73
106164165 AAATCGACTC
* *
106164175 ATTGCGAGAGGTGAG-TGAG-CTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAT
1 ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAA
106164238 AAC-TCAT
66 AACATCAT
* * *
106164245 ATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGT-CTTTCAATTT-TGTTCTCATTT
1 ATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTCTG-T-T--TGT
*
106164307 CTTTGAAAAAAAAATCAACTAT
59 C-----AAAAAAAA-CATC-AT
* *
106164329 ATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGA-GTAA-TTCAATTTC--TTTGTTAAAAAA
1 ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTG-T-CAAAA
106164390 AAAACATCAT
64 AAAACATCAT
* * *
106164400 ATTGCGAGAGG-GAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTCTGTTT-TCAAAAAT
1 ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAA-
*
106164463 CAAC-TCAT
65 AAACATCAT
106164471 A-TGCG-GA-GTGAGTTGAGCC
1 ATTGCGAGAGGTGAGTTGAGCC
106164490 GGTTCACATG
Statistics
Matches: 200, Mismatches: 17, Indels: 57
0.73 0.06 0.21
Matches are distributed among these distances:
68 1 0.00
69 12 0.06
70 43 0.22
71 31 0.16
72 19 0.09
73 18 0.09
74 15 0.08
76 4 0.02
77 1 0.00
78 1 0.00
79 1 0.00
81 17 0.09
82 9 0.05
83 1 0.00
84 25 0.12
85 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (73 bp):
ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAA
AACATCAT
Found at i:106165733 original size:22 final size:23
Alignment explanation
Indices: 106165708--106165769 Score: 54
Period size: 24 Copynumber: 2.7 Consensus size: 23
106165698 TATTTAAATT
106165708 CTATATTGTATATATAATT-ATA
1 CTATATTGTATATATAATTAATA
* **
106165730 CTATTTTATGTATATATCTTTAATA
1 CTA-TAT-TGTATATATAATTAATA
* *
106165755 TTATATTATATATAT
1 CTATATTGTATATAT
106165770 TTTTTTACAT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
22 3 0.10
23 10 0.32
24 13 0.42
25 5 0.16
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (23 bp):
CTATATTGTATATATAATTAATA
Found at i:106165882 original size:22 final size:23
Alignment explanation
Indices: 106165838--106165882 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
106165828 ATTATGTACA
*
106165838 TATTTTTAATATTATCACGTATT
1 TATTTTTAATATTATCACATATT
* *
106165861 TATTTTTTATA-TATTACATATT
1 TATTTTTAATATTATCACATATT
106165883 GATGTAGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTTTTAATATTATCACATATT
Found at i:106166072 original size:19 final size:19
Alignment explanation
Indices: 106166013--106166073 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
106166003 TTTGATATTT
* * * *
106166013 AATAATTTTAATTTTATAT
1 AATAATATTGATTTTTTAC
106166032 AAT-ATATTCGATTTTTTGAC
1 AATAATATT-GATTTTTT-AC
106166052 AATAATATTGATTTTTTAC
1 AATAATATTGATTTTTTAC
106166071 AAT
1 AAT
106166074 TAAAAATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 4 0.11
19 14 0.40
20 12 0.34
21 5 0.14
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (19 bp):
AATAATATTGATTTTTTAC
Found at i:106168795 original size:23 final size:22
Alignment explanation
Indices: 106168736--106168799 Score: 60
Period size: 23 Copynumber: 2.9 Consensus size: 22
106168726 TGGCTGAAAT
106168736 TTAATTATAATTTT-TTATAGA
1 TTAATTATAATTTTATTATAGA
* * *
106168757 TTAAAATATGAGTTTATTAT-GTA
1 TT-AATTATAATTTTATTATAG-A
106168780 TTAATTTATAATTTTATTAT
1 TTAA-TTATAATTTTATTAT
106168800 TTTTGAATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 2 0.06
22 12 0.36
23 19 0.58
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (22 bp):
TTAATTATAATTTTATTATAGA
Found at i:106176126 original size:22 final size:22
Alignment explanation
Indices: 106176083--106176123 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
106176073 CTCGACTAAT
* *
106176083 CTTTAATAAATTTTTATATTAA
1 CTTTAATAAATATTCATATTAA
106176105 CTTT-ATAAATATTCATATT
1 CTTTAATAAATATTCATATT
106176124 TAATATTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (22 bp):
CTTTAATAAATATTCATATTAA
Found at i:106180430 original size:31 final size:31
Alignment explanation
Indices: 106180357--106180430 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 31
106180347 AATTAATTGG
* * * *
106180357 ACCTTCAAAATTTTTTTAAATTTTTAGTTAA
1 ACCTTCAAAATTATTTAAAAATTTTAATTAA
* * *
106180388 ATCATCTAAATTATTTAAAAATTTTAATTAA
1 ACCTTCAAAATTATTTAAAAATTTTAATTAA
*
106180419 GCCTTCAAAATT
1 ACCTTCAAAATT
106180431 TAATGTTAAG
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.11, G:0.03, T:0.46
Consensus pattern (31 bp):
ACCTTCAAAATTATTTAAAAATTTTAATTAA
Found at i:106186377 original size:22 final size:21
Alignment explanation
Indices: 106186319--106186386 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
106186309 AAAATCAAAG
* *
106186319 AAATTTATAAAAATACATAAAT
1 AAATTTA-AAAAATATAAAAAT
** *
106186341 ATTTTTAAAAAATATAATAAT
1 AAATTTAAAAAATATAAAAAT
*
106186362 AAATTTAAATATATATAAAAAT
1 AAATTTAAA-AAATATAAAAAT
106186384 AAA
1 AAA
106186387 AATATTGTTG
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
21 18 0.50
22 18 0.50
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATTTAAAAAATATAAAAAT
Found at i:106186389 original size:18 final size:18
Alignment explanation
Indices: 106186348--106186391 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
106186338 AATATTTTTA
106186348 AAAAATATAATAATAAAT
1 AAAAATATAATAATAAAT
**
106186366 TTAAATATATATAA-AAAT
1 AAAAATATA-ATAATAAAT
106186384 AAAAATAT
1 AAAAATAT
106186392 TGTTGATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAATATAATAATAAAT
Found at i:106190560 original size:39 final size:38
Alignment explanation
Indices: 106190507--106190584 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 38
106190497 AAATATGGTT
*
106190507 TTAATTAATAATAAAACAAAGTGGCATGAGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAGCATG-GGGAGTGGGA
*
106190546 TTAATTAATAATAAAACATAGTAGCATGGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAGCATGGGGAGTGGGA
106190584 T
1 T
106190585 CAGCTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 11 0.30
39 26 0.70
ACGTcount: A:0.42, C:0.05, G:0.27, T:0.26
Consensus pattern (38 bp):
TTAATTAATAATAAAACAAAGTAGCATGGGGAGTGGGA
Found at i:106191052 original size:30 final size:32
Alignment explanation
Indices: 106190992--106191053 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 32
106190982 GCATATCTGT
* *
106190992 TTATATGAAATACCTTTATATTATTATTACTA
1 TTATATGAAATACATTTATATTAATATTACTA
*
106191024 TTATATG-TATACATTTATA-TAATATTACTA
1 TTATATGAAATACATTTATATTAATATTACTA
106191054 ATAGTTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 10 0.37
31 10 0.37
32 7 0.26
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.50
Consensus pattern (32 bp):
TTATATGAAATACATTTATATTAATATTACTA
Found at i:106191109 original size:13 final size:13
Alignment explanation
Indices: 106191093--106191151 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
106191083 TACCATGTAA
106191093 ATATTTTAATATT
1 ATATTTTAATATT
* *
106191106 ATATTAT-GTA-T
1 ATATTTTAATATT
*
106191117 ACATTTTATATATAT
1 ATATTTTA-ATAT-T
*
106191132 ATCTTTTAATATT
1 ATATTTTAATATT
106191145 ATATTTT
1 ATATTTT
106191152 TATTGTTTTG
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
11 6 0.18
12 2 0.06
13 15 0.44
14 4 0.12
15 7 0.21
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (13 bp):
ATATTTTAATATT
Found at i:106191114 original size:24 final size:24
Alignment explanation
Indices: 106191068--106191133 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 24
106191058 TTTATTTTTT
* **
106191068 ACATTATTATGTATATACCATGTAA
1 ACATT-TTATATATATATTATGTAA
* *
106191093 ATATTTTA-ATATTATATTATGTAT
1 ACATTTTATATA-TATATTATGTAA
106191117 ACATTTTATATATATAT
1 ACATTTTATATATATAT
106191134 CTTTTAATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
23 2 0.06
24 24 0.73
25 7 0.21
ACGTcount: A:0.39, C:0.06, G:0.05, T:0.50
Consensus pattern (24 bp):
ACATTTTATATATATATTATGTAA
Found at i:106191674 original size:9 final size:9
Alignment explanation
Indices: 106191660--106191685 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
106191650 GTTATTGTCT
106191660 TTTTATTCG
1 TTTTATTCG
106191669 TTTTATTCG
1 TTTTATTCG
106191678 TTTTATTC
1 TTTTATTC
106191686 ATTTATTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.08, T:0.69
Consensus pattern (9 bp):
TTTTATTCG
Found at i:106192692 original size:506 final size:506
Alignment explanation
Indices: 106191843--106192859 Score: 1917
Period size: 506 Copynumber: 2.0 Consensus size: 506
106191833 TCTTTTAAAA
106191843 AATTTCATTAAAACGAAAGAGATGTTCGATATTTAGCAATTCATGGAATCGTGCCCTAACGTGTT
1 AATTTCATTAAAACGAAAGAGATGTTCGATATTTAGCAATTCATGGAATCGTGCCCTAACGTGTT
* *
106191908 GGGTTGTAATTTCTCGTTTGCTCAAAATAATCGAATGTCTCTTTAGAATTTCATTCATGTTTTCT
66 GGGTTGCAATTTATCGTTTGCTCAAAATAATCGAATGTCTCTTTAGAATTTCATTCATGTTTTCT
*
106191973 AAAAAAAAACTTATAAAGGAAATGTTCGGTATTTAGCAGTTCGGGGAATAGTACCCTGTCGTGTT
131 AAAAAAAAACTTATAAAGGAAATGTTCGGTATTTAGCAGTTCGGGGAATAGTACCCTATCGTGTT
*
106192038 GGGTTGCAATTTCCTATTTGCTCAAAATAATCGAATATCTCTTCAGAATTTCACTCGTATCTTCC
196 GGGTTGCAATTTCCTATTTGCTCAAAATAATAGAATATCTCTTCAGAATTTCACTCGTATCTTCC
106192103 AAGGTGAGGCAATGGTCAATGTTTAGAAATTCGAGGAATCGTGCCCTACTGTGCTGGGTATTGAT
261 AAGGTGAGGCAATGGTCAATGTTTAGAAATTCGAGGAATCGTGCCCTACTGTGCTGGGTATTGAT
* *
106192168 TTTTCGTTGGACCAAATAGTTGGGCATCATTTTGTTATTTTCGAATTACAAATTTTCGAACGTTG
326 TTTTCGTTGGACCAAATAGTTGGGCATCATTTTGTTATTTTCGAATTACAAATTTTCGAAAGTCG
106192233 AAACAAGAAGATTTTTGGCAATGGACTCAGGTTATTCAAATGTTATTAACAAGAACCACATTTTA
391 AAACAAGAAGATTTTTGGCAATGGACTCAGGTTATTCAAATGTTATTAACAAGAACCACATTTTA
*
106192298 AAAACATTTTTAATTTTAGACAAAAGGACTGTATTTAATCGATTTGGTACC
456 AAAACATTTTTAATTTTAGACAAAAGGACAGTATTTAATCGATTTGGTACC
106192349 AATTTCATTAAAACGAAAGAGATGTTCGATATTTAGCAATTCATGGAATCGTGCCCTAACGTGTT
1 AATTTCATTAAAACGAAAGAGATGTTCGATATTTAGCAATTCATGGAATCGTGCCCTAACGTGTT
106192414 GGGTTGCAATTTATCGTTTGCTCAAAATAATCGAATGTCTCTTTAGAATTTCATTCATGTTTTCT
66 GGGTTGCAATTTATCGTTTGCTCAAAATAATCGAATGTCTCTTTAGAATTTCATTCATGTTTTCT
106192479 AAAAAAAAACTTATAAAGGAAATGTTCGGTATTTAGCAGTTCGGGGAATAGTACCCTATCGTGTT
131 AAAAAAAAACTTATAAAGGAAATGTTCGGTATTTAGCAGTTCGGGGAATAGTACCCTATCGTGTT
* **
106192544 GGGTTGCAATTTCCTATTTGCTCAAAATAATATAATATCTCTTTGGAATTTCACTCGTATCTTCC
196 GGGTTGCAATTTCCTATTTGCTCAAAATAATAGAATATCTCTTCAGAATTTCACTCGTATCTTCC
*
106192609 AAGGTGAGGCAATGGTCAATGTTTGGAAATTCGAGGAATCGTGCCCTACTGTGCTGGGTATTGAT
261 AAGGTGAGGCAATGGTCAATGTTTAGAAATTCGAGGAATCGTGCCCTACTGTGCTGGGTATTGAT
*
106192674 TTTTCGTTGGACCAAATAGTTGGGCATCATTTTGTTATTTTTGAATTACAAATTTTCGAAAGTCG
326 TTTTCGTTGGACCAAATAGTTGGGCATCATTTTGTTATTTTCGAATTACAAATTTTCGAAAGTCG
*
106192739 AAACAAGAAGATTTTTGGCAATGGACTCGGGTTATTCAAATGTTATTAACAAGAACCACATTTTA
391 AAACAAGAAGATTTTTGGCAATGGACTCAGGTTATTCAAATGTTATTAACAAGAACCACATTTTA
106192804 AAAACATTTTTAATTTTAGACAAAAGGACAGTATTTAATCGATTTGGTACC
456 AAAACATTTTTAATTTTAGACAAAAGGACAGTATTTAATCGATTTGGTACC
106192855 AATTT
1 AATTT
106192860 TGGGCGTAAT
Statistics
Matches: 498, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
506 498 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36
Consensus pattern (506 bp):
AATTTCATTAAAACGAAAGAGATGTTCGATATTTAGCAATTCATGGAATCGTGCCCTAACGTGTT
GGGTTGCAATTTATCGTTTGCTCAAAATAATCGAATGTCTCTTTAGAATTTCATTCATGTTTTCT
AAAAAAAAACTTATAAAGGAAATGTTCGGTATTTAGCAGTTCGGGGAATAGTACCCTATCGTGTT
GGGTTGCAATTTCCTATTTGCTCAAAATAATAGAATATCTCTTCAGAATTTCACTCGTATCTTCC
AAGGTGAGGCAATGGTCAATGTTTAGAAATTCGAGGAATCGTGCCCTACTGTGCTGGGTATTGAT
TTTTCGTTGGACCAAATAGTTGGGCATCATTTTGTTATTTTCGAATTACAAATTTTCGAAAGTCG
AAACAAGAAGATTTTTGGCAATGGACTCAGGTTATTCAAATGTTATTAACAAGAACCACATTTTA
AAAACATTTTTAATTTTAGACAAAAGGACAGTATTTAATCGATTTGGTACC
Found at i:106200672 original size:24 final size:24
Alignment explanation
Indices: 106200645--106200708 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 24
106200635 GATGTTGATG
*
106200645 ATATTTATAATTATTTAATTAGAT
1 ATATTTATTATTATTTAATTAGAT
*
106200669 ATA--TATTA-T-TTTAATGAGAT
1 ATATTTATTATTATTTAATTAGAT
*
106200689 AT-TTTATTATTATTTTATTA
1 ATATTTATTATTATTTAATTA
106200709 TTAATTATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 9
0.71 0.09 0.20
Matches are distributed among these distances:
20 12 0.38
21 6 0.19
22 5 0.16
23 6 0.19
24 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.58
Consensus pattern (24 bp):
ATATTTATTATTATTTAATTAGAT
Found at i:106202901 original size:46 final size:46
Alignment explanation
Indices: 106202849--106203168 Score: 444
Period size: 46 Copynumber: 7.0 Consensus size: 46
106202839 AGTTTGCTCT
*
106202849 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
106202895 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
106202941 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
106202987 CTGACATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *** *
106203033 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
106203079 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
106203125 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
106203169 TCATGTCAAA
Statistics
Matches: 251, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 250 1.00
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:106204733 original size:19 final size:18
Alignment explanation
Indices: 106204710--106204753 Score: 70
Period size: 19 Copynumber: 2.4 Consensus size: 18
106204700 TCCCATGCAT
106204710 TTGCATTGCATTGCATCA
1 TTGCATTGCATTGCATCA
*
106204728 TGTGCACTGCATTGCATCA
1 T-TGCATTGCATTGCATCA
106204747 TTGCATT
1 TTGCATT
106204754 AGATTTTCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (18 bp):
TTGCATTGCATTGCATCA
Found at i:106208847 original size:44 final size:44
Alignment explanation
Indices: 106208776--106209003 Score: 339
Period size: 44 Copynumber: 5.2 Consensus size: 44
106208766 TCATTTAAGC
* *
106208776 AGATAACAGATTTGGCGTCTCTATAGCGGCGGAGAGTAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
106208820 AGATAACAGATTTGGCGCCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
106208864 AGATAACAGATTTGGCGCCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * * *
106208908 AGATGACAGATTTGGTGTCTCTGTAGTGGCGGAGAACAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * * *
106208952 AGATGAGAGATTTGGCGTCTCTGTAGTGGAGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
106208996 AAATAACA
1 AGATAACA
106209004 TATCGGTGTT
Statistics
Matches: 169, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 169 1.00
ACGTcount: A:0.29, C:0.16, G:0.33, T:0.21
Consensus pattern (44 bp):
AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
Found at i:106209917 original size:13 final size:13
Alignment explanation
Indices: 106209899--106209923 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
106209889 TCTTTTGAAA
106209899 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
106209912 AAAGAAAAAAAA
1 AAAGAAAAAAAA
106209924 AGCTTCAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:106210464 original size:38 final size:39
Alignment explanation
Indices: 106210414--106210491 Score: 140
Period size: 38 Copynumber: 2.0 Consensus size: 39
106210404 AAATATGGTT
*
106210414 TTAATTAATAATAAAACAAAGTGGCAT-GGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
106210452 TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
1 TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
106210491 T
1 T
106210492 CAGCTTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 26 0.68
39 12 0.32
ACGTcount: A:0.42, C:0.05, G:0.28, T:0.24
Consensus pattern (39 bp):
TTAATTAATAATAAAACAAAGTAGCATGGGGGAGTGGGA
Found at i:106232841 original size:30 final size:30
Alignment explanation
Indices: 106232801--106232902 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
106232791 TTTTAAATAA
* *
106232801 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAAC-TTTCATT
* *
106232831 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
* *
106232861 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
106232891 AAATTTCATTTT
1 AAATTTCATTTT
106232903 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 4 0.06
30 58 0.94
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCATT
Found at i:106233173 original size:3 final size:3
Alignment explanation
Indices: 106233165--106233226 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
106233155 GCTAGACTTT
*
106233165 GAA GAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA GAAA GAAA GAA -AA
1 GAA GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA G-AA G-AA GAA GAA
*
106233211 -AA GAA AAA GAA -AA GAA
1 GAA GAA GAA GAA GAA GAA
106233227 ATAATAAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
2 8 0.16
3 32 0.64
4 10 0.20
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:106233195 original size:14 final size:13
Alignment explanation
Indices: 106233165--106233227 Score: 58
Period size: 13 Copynumber: 4.8 Consensus size: 13
106233155 GCTAGACTTT
*
106233165 GAAGAAGAAGAAG
1 GAAGAAGAAAAAG
106233178 GAAGAAGAAAAGAG
1 GAAGAAGAAAA-AG
106233192 GAAGAAGAAAGAAAG
1 GAAGAAG-AA-AAAG
* *
106233207 AAAAAAGAAAAA-
1 GAAGAAGAAAAAG
106233219 GAA-AAGAAA
1 GAAGAAGAAA
106233228 TAATAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
11 6 0.14
12 2 0.05
13 13 0.30
14 11 0.26
15 9 0.21
16 2 0.05
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAAAAG
Found at i:106233195 original size:21 final size:22
Alignment explanation
Indices: 106233166--106233227 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 22
106233156 CTAGACTTTG
*
106233166 AAGAAGAAGAAGGAAG-AAGAA
1 AAGAAGAAGAAGAAAGAAAGAA
*
106233187 AAGAGGAAGAAGAAAGAAAGAA
1 AAGAAGAAGAAGAAAGAAAGAA
*
106233209 AA-AAGAAAAAGAAAAGAAA
1 AAGAAGAAGAAG-AAAGAAA
106233228 TAATAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 21 0.60
22 14 0.40
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (22 bp):
AAGAAGAAGAAGAAAGAAAGAA
Found at i:106233200 original size:24 final size:24
Alignment explanation
Indices: 106233168--106233214 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
106233158 AGACTTTGAA
*
106233168 GAAGAAG-AAGGAAGAAGAAAAGAG
1 GAAGAAGAAAGAAAGAA-AAAAGAG
106233192 GAAGAAGAAAGAAAGAAAAAAGA
1 GAAGAAGAAAGAAAGAAAAAAGA
106233215 AAAAGAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (24 bp):
GAAGAAGAAAGAAAGAAAAAAGAG
Found at i:106233220 original size:24 final size:24
Alignment explanation
Indices: 106233169--106233227 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
106233159 GACTTTGAAG
* **
106233169 AAGAAGAAGGAAGAAGAAAAGAGG
1 AAGAAGAAGAAAGAAGAAAAGAAA
106233193 AAGAAGAAAGAAAGAA-AAAAGAAA
1 AAGAAG-AAGAAAGAAGAAAAGAAA
106233217 AAGAA-AAGAAA
1 AAGAAGAAGAAA
106233228 TAATAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 6 0.19
24 17 0.55
25 8 0.26
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (24 bp):
AAGAAGAAGAAAGAAGAAAAGAAA
Found at i:106233508 original size:15 final size:15
Alignment explanation
Indices: 106233488--106233546 Score: 50
Period size: 15 Copynumber: 3.8 Consensus size: 15
106233478 GGCCCAGCAG
106233488 AGAAAAAAAAAGAAA
1 AGAAAAAAAAAGAAA
106233503 AGAAAAAGAAGAA-AAA
1 AGAAAAA-AA-AAGAAA
*
106233519 GAGAAGGAAAAAAG-AA
1 -AGAA-AAAAAAAGAAA
*
106233535 GGAAAAAAAAAG
1 AGAAAAAAAAAG
106233547 GTTCAATTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
14 7 0.19
15 10 0.28
16 9 0.25
17 8 0.22
18 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
AGAAAAAAAAAGAAA
Found at i:106233523 original size:22 final size:22
Alignment explanation
Indices: 106233488--106233543 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
106233478 GGCCCAGCAG
106233488 AGAA-AAAAAAAGAAA-AGAAAA
1 AGAAGAAAAAAAGAAAGA-AAAA
* *
106233509 AGAAGAAAAAGAGAAGGAAAAA
1 AGAAGAAAAAAAGAAAGAAAAA
106233531 AGAAGGAAAAAAA
1 AGAA-GAAAAAAA
106233544 AAGGTTCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 4 0.14
22 17 0.59
23 8 0.28
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (22 bp):
AGAAGAAAAAAAGAAAGAAAAA
Found at i:106233534 original size:11 final size:11
Alignment explanation
Indices: 106233505--106233547 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
106233495 AAAAGAAAAG
106233505 AAAAAGAA-GA
1 AAAAAGAAGGA
106233515 AAAAGAGAAGGA
1 AAAA-AGAAGGA
106233527 AAAAAGAAGGA
1 AAAAAGAAGGA
*
106233538 AAAAAAAAGG
1 AAAAAGAAGG
106233548 TTCAATTCGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 4 0.13
11 20 0.67
12 6 0.20
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (11 bp):
AAAAAGAAGGA
Found at i:106233547 original size:22 final size:22
Alignment explanation
Indices: 106233494--106233547 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
106233484 GCAGAGAAAA
106233494 AAAAAGAAAA-G-AAAAAGAAG
1 AAAAAGAAAAGGAAAAAAGAAG
*
106233514 AAAAAGAGAAGGAAAAAAGAAGG
1 AAAAAGAAAAGGAAAAAAGAA-G
106233537 AAAAA-AAAAGG
1 AAAAAGAAAAGG
106233548 TTCAATTCGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 9 0.31
21 1 0.03
22 13 0.45
23 6 0.21
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (22 bp):
AAAAAGAAAAGGAAAAAAGAAG
Found at i:106233711 original size:16 final size:17
Alignment explanation
Indices: 106233685--106233722 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
106233675 TTATATTTAT
106233685 ATTTTTAATTTAATTTG
1 ATTTTTAATTTAATTTG
* *
106233702 ATTTTT-ATTTTATTTT
1 ATTTTTAATTTAATTTG
106233718 ATTTT
1 ATTTT
106233723 AAATAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTTTAATTTAATTTG
Found at i:106233919 original size:18 final size:17
Alignment explanation
Indices: 106233875--106234379 Score: 214
Period size: 17 Copynumber: 28.9 Consensus size: 17
106233865 TCTATAATCC
106233875 TCGTGCTTTT-AAAAATT
1 TCGTG-TTTTCAAAAATT
*
106233892 CTCATG-TTTCAAAAATCT
1 -TCGTGTTTTCAAAAAT-T
106233910 TCGTGTTTTC-AAAATT
1 TCGTGTTTTCAAAAATT
*
106233926 CTAGTG-TTTCAAAAATTT
1 -TCGTGTTTTCAAAAA-TT
*
106233944 TCTTGTTTTCAGAAAAAAATT
1 TCGTGTTTTC----AAAAATT
*
106233965 TCGTGTTTT-ATAAATT
1 TCGTGTTTTCAAAAATT
* **
106233981 TCCGTATTTTCAAAAAAA
1 T-CGTGTTTTCAAAAATT
*
106233999 TCATGTCTTTCAAAAATTT
1 TCGTGT-TTTCAAAAA-TT
*
106234018 TCGTGTTTTCAAAAAAAATGA
1 TCGTGTTTTC---AAAAAT-T
*
106234039 CCGTG-TTTCAAAAATT
1 TCGTGTTTTCAAAAATT
***
106234055 TCCGTGTTAAAAAAAAATCT
1 T-CGTGTT-TTCAAAAAT-T
*
106234075 TCGTATTTTCAAAAATTT
1 TCGTGTTTTCAAAAA-TT
106234093 TCGTG-TTTCAAAAATCT
1 TCGTGTTTTCAAAAAT-T
106234110 TCGTGTTTTCAAAAATT
1 TCGTGTTTTCAAAAATT
*
106234127 TCG-GTGTTTCAAAGATTT
1 TCGTGT-TTTCAAA-AATT
*
106234145 TCGTGTTTTCAAAAACT
1 TCGTGTTTTCAAAAATT
* * **
106234162 CCGGTGATTTTAAAAAAAA
1 TC-GTG-TTTTCAAAAATT
*
106234181 TCGT-TTTCTAAAAAATT
1 TCGTGTTT-TCAAAAATT
106234198 TCCGTGTTTT-AAAAATT
1 T-CGTGTTTTCAAAAATT
*
106234215 CTCGTGTTTTTAAAAA-T
1 -TCGTGTTTTCAAAAATT
* *
106234232 TCTTGTATTT--TAAATT
1 TCGTGT-TTTCAAAAATT
* *
106234248 T--T-TTTTAAGAAAAAAAT
1 TCGTGTTTT---CAAAAATT
*
106234265 T-GTG-TTTCAAAAAAATA
1 TCGTGTTTTC--AAAAATT
*
106234282 TCTTGTTTT-AAAAATT
1 TCGTGTTTTCAAAAATT
*
106234298 CTCGTG-TTTCAAAAAATG
1 -TCGTGTTTTC-AAAAATT
106234316 TCGTGTTTT-AAAAATTT
1 TCGTGTTTTCAAAAA-TT
*
106234333 TCGTG-TTTCTAAAATT
1 TCGTGTTTTCAAAAATT
106234349 TCCGTG-TTT-AAAAATT
1 T-CGTGTTTTCAAAAATT
106234365 CTCGTGTTTT-AAAAA
1 -TCGTGTTTTCAAAAA
106234380 AAAAACTTTC
Statistics
Matches: 377, Mismatches: 52, Indels: 117
0.69 0.10 0.21
Matches are distributed among these distances:
12 3 0.01
13 1 0.00
14 1 0.00
15 3 0.01
16 58 0.15
17 148 0.39
18 97 0.26
19 35 0.09
20 7 0.02
21 19 0.05
22 5 0.01
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (17 bp):
TCGTGTTTTCAAAAATT
Found at i:106233937 original size:16 final size:16
Alignment explanation
Indices: 106233886--106233939 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
106233876 CGTGCTTTTA
106233886 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
106233902 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
106233920 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
106233936 AAAA
1 AAAA
106233940 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:106234025 original size:74 final size:75
Alignment explanation
Indices: 106233932--106234106 Score: 214
Period size: 74 Copynumber: 2.4 Consensus size: 75
106233922 AATTCTAGTG
* ** * * * **
106233932 TTTCAAAAATTTTCTTGTTTTCAGAAAAAAAT-TTCGTGTTTTATAAATTTCCGTATTTTCAAAA
1 TTTCAAAAATTTTCGTGTTTTCA-AAAAAAATGACCGTGTTTCAAAAATTTCCGT-GTTAAAAAA
106233996 AAATCAT-GT-C
64 AAATCATCGTAC
106234006 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
* *
106234071 ATCTTCGTAT
66 ATCATCGTAC
106234081 TTTCAAAAATTTTCGTG-TTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAA
106234107 TCTTCGTGTT
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
73 20 0.23
74 51 0.58
75 17 0.19
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (75 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
ATCATCGTAC
Found at i:106234113 original size:35 final size:35
Alignment explanation
Indices: 106233898--106234379 Score: 193
Period size: 35 Copynumber: 13.7 Consensus size: 35
106233888 AATTCTCATG
* * *
106233898 TTTCAAAAATCTTCGTGTTTTCAAAATTC-TAGTG-
1 TTTCAAAAATTTTCGTG-TTTCAAAAATCTTCGTGT
*
106233932 TTTCAAAAATTTTCTTGTTTTCAGAAAAAAAT-TTCGTGT
1 TTTCAAAAATTTTCGTG-TTTC----AAAAATCTTCGTGT
* * * ** *
106233971 TTT-ATAAATTTCCGTATTTTCAAAAA-AATCATGT
1 TTTCAAAAATTTTCGT-GTTTCAAAAATCTTCGTGT
***
106234005 CTTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTG-
1 -TTTCAAAAATTTTCGTG-TTTC---AAAAATCTTCGTGT
* ** *
106234044 TTTCAAAAATTTCCGTGTTAAAAAAAAATCTTCGTAT
1 TTTCAAAAATTTTCGTGTT--TCAAAAATCTTCGTGT
106234081 TTTCAAAAATTTTCGTGTTTCAAAAATCTTCGTGT
1 TTTCAAAAATTTTCGTGTTTCAAAAATCTTCGTGT
* *
106234116 TTTCAAAAA-TTTCGGTGTTTCAAAGATTTTCGTGT
1 TTTCAAAAATTTTC-GTGTTTCAAAAATCTTCGTGT
* * * ***
106234151 TTTCAAAAA-CTCCGGTGATTTTAAAAAAAATCGT-T
1 TTTCAAAAATTTTC-GTG-TTTCAAAAATCTTCGTGT
* * *
106234186 TTCTAAAAAATTTCCGTGTTTTAAAAAT-TCTCGTGT
1 TT-TCAAAAATTTTCGTGTTTCAAAAATCT-TCGTGT
* * *
106234222 TTTTAAAAATTCTT-GTATTT--TAAAT-TT--T-T
1 TTTCAAAAATT-TTCGTGTTTCAAAAATCTTCGTGT
* ** ** *
106234251 TTTAAGAAAAAAATT-GTGTTTCAAAAAAATATCTTGT
1 TTT--CAAAAATTTTCGTGTTTCAAAAATCT-TCGTGT
* *
106234288 TTT-AAAAATTCTCGTGTTTCAAAAAAT-GTCGTGT
1 TTTCAAAAATTTTCGTGTTTC-AAAAATCTTCGTGT
*
106234322 TTT-AAAAATTTTCGTGTTTCTAAAAT-TTCCGTG-
1 TTTCAAAAATTTTCGTGTTTCAAAAATCTT-CGTGT
* *
106234355 TTT-AAAAATTCTCGTGTTTTAAAAA
1 TTTCAAAAATTTTCGTGTTTCAAAAA
106234380 AAAAACTTTC
Statistics
Matches: 349, Mismatches: 62, Indels: 75
0.72 0.13 0.15
Matches are distributed among these distances:
29 4 0.01
30 8 0.02
31 5 0.01
32 4 0.01
33 34 0.10
34 69 0.20
35 95 0.27
36 53 0.15
37 27 0.08
38 38 0.11
39 8 0.02
40 4 0.01
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (35 bp):
TTTCAAAAATTTTCGTGTTTCAAAAATCTTCGTGT
Found at i:106234394 original size:20 final size:20
Alignment explanation
Indices: 106234371--106234411 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
106234361 AATTCTCGTG
106234371 TTTTAAAAAAAAAACTTTCA
1 TTTTAAAAAAAAAACTTTCA
** *
106234391 TTTTTTAAAAAAAATTTTCA
1 TTTTAAAAAAAAAACTTTCA
106234411 T
1 T
106234412 ATTTCAATCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (20 bp):
TTTTAAAAAAAAAACTTTCA
Found at i:106242461 original size:25 final size:22
Alignment explanation
Indices: 106242410--106242464 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
106242400 TATTATTTTA
* *
106242410 TGTAAATATTTTCTAAATTTAT
1 TGTATATATTTTCTAAAATTAT
106242432 TGTATATATTTTCTTTAAAATTAT
1 TGTATATATTTTC--TAAAATTAT
106242456 TCGTATATA
1 T-GTATATA
106242465 GCTTGGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 12 0.43
24 9 0.32
25 7 0.25
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (22 bp):
TGTATATATTTTCTAAAATTAT
Found at i:106243613 original size:19 final size:18
Alignment explanation
Indices: 106243576--106243627 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
106243566 AATTTTATTC
106243576 ATTTATTTA-TTAT-TATT
1 ATTTATTTATTTATGT-TT
106243593 ATTGT-TTTACTTTATGTTT
1 ATT-TATTTA-TTTATGTTT
106243612 ATTTATTTATTTATGT
1 ATTTATTTATTTATGT
106243628 GTCCATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
17 7 0.23
18 9 0.30
19 13 0.43
20 1 0.03
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (18 bp):
ATTTATTTATTTATGTTT
Found at i:106243743 original size:15 final size:15
Alignment explanation
Indices: 106243723--106243756 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
106243713 TTTATTTTTG
*
106243723 TTATTTTTGCTCGTA
1 TTATTTTTGCTCGCA
106243738 TTATTTTTGCTCGCA
1 TTATTTTTGCTCGCA
106243753 TTAT
1 TTAT
106243757 CGTAATTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.59
Consensus pattern (15 bp):
TTATTTTTGCTCGCA
Found at i:106247005 original size:12 final size:11
Alignment explanation
Indices: 106246988--106247041 Score: 56
Period size: 11 Copynumber: 4.6 Consensus size: 11
106246978 AGTGGGGGCA
106246988 AAAAAAAAAAG
1 AAAAAAAAAAG
*
106246999 TAAAAAAAATGAG
1 -AAAAAAAA-AAG
106247012 AAAAAAAAAAAG
1 -AAAAAAAAAAG
106247024 AAAAAAAAACA-
1 AAAAAAAAA-AG
106247035 AAAAAAA
1 AAAAAAA
106247042 CCAAATAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 16 0.43
12 11 0.30
13 10 0.27
ACGTcount: A:0.87, C:0.02, G:0.07, T:0.04
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:106247051 original size:24 final size:22
Alignment explanation
Indices: 106246986--106247058 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 22
106246976 TCAGTGGGGG
106246986 CAAAAAAAAAAAGTAAAAAAAATGA
1 CAAAAAAAAAAA-TAAAAAAAA--A
* *
106247011 GAAAAAAAAAAAGAAAAAAAAA
1 CAAAAAAAAAAATAAAAAAAAA
106247033 CAAAAAAAACCAAATAAAAGAAAAA
1 CAAAAAAAA--AAATAAAA-AAAAA
106247058 C
1 C
106247059 CTCTACTGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
22 9 0.22
24 15 0.37
25 17 0.41
ACGTcount: A:0.82, C:0.07, G:0.07, T:0.04
Consensus pattern (22 bp):
CAAAAAAAAAAATAAAAAAAAA
Found at i:106247506 original size:7 final size:7
Alignment explanation
Indices: 106247496--106247545 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
106247486 AAAAAAAAAC
106247496 AAAAAGA
1 AAAAAGA
*
106247503 AAAATGA
1 AAAAAGA
106247510 AAAAATG-
1 AAAAA-GA
106247517 -AAAA-A
1 AAAAAGA
106247522 AAAAAGA
1 AAAAAGA
106247529 AAAAAG-
1 AAAAAGA
106247535 AAAAAGA
1 AAAAAGA
106247542 AAAA
1 AAAA
106247546 GGAGAGGCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
6 14 0.39
7 21 0.58
8 1 0.03
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (7 bp):
AAAAAGA
Found at i:106247520 original size:26 final size:24
Alignment explanation
Indices: 106247483--106247545 Score: 81
Period size: 26 Copynumber: 2.5 Consensus size: 24
106247473 ATACTTCACT
*
106247483 TGAAAAAAAAAACAAAAAGAAAAA
1 TGAAAAAAAAAAAAAAAAGAAAAA
106247507 TGAAAAAATGAAAAAAAAAAGAAAAA
1 TGAAAAAA--AAAAAAAAAAGAAAAA
* *
106247533 AGAAAAAGAAAAA
1 TGAAAAAAAAAAA
106247546 GGAGAGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 13 0.38
26 21 0.62
ACGTcount: A:0.83, C:0.02, G:0.11, T:0.05
Consensus pattern (24 bp):
TGAAAAAAAAAAAAAAAAGAAAAA
Found at i:106247520 original size:32 final size:32
Alignment explanation
Indices: 106247483--106247545 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
106247473 ATACTTCACT
*
106247483 TGAAAAAAAAAA-CAAAAAGAAAAATGAAAAAA
1 TGAAAAAAAAAAGAAAAAAGAAAAA-GAAAAAA
106247515 TGAAAAAAAAAAGAAAAAAGAAAAAGAAAAA
1 TGAAAAAAAAAAGAAAAAAGAAAAAGAAAAA
106247546 GGAGAGGCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.83, C:0.02, G:0.11, T:0.05
Consensus pattern (32 bp):
TGAAAAAAAAAAGAAAAAAGAAAAAGAAAAAA
Found at i:106247546 original size:6 final size:6
Alignment explanation
Indices: 106247484--106247546 Score: 67
Period size: 6 Copynumber: 10.2 Consensus size: 6
106247474 TACTTCACTT
*
106247484 GAAAAA -AAAAA CAAAAA GAAAAA TGAAAAAA TGAAAAA -AAAAA GAAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA -G-AAAAA -GAAAAA GAAAAA G-AAAAA
106247534 GAAAAA GAAAAA G
1 GAAAAA GAAAAA G
106247547 GAGAGGCCAA
Statistics
Matches: 51, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
5 10 0.20
6 22 0.43
7 12 0.24
8 7 0.14
ACGTcount: A:0.83, C:0.02, G:0.13, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:106248650 original size:46 final size:46
Alignment explanation
Indices: 106248590--106248786 Score: 142
Period size: 46 Copynumber: 4.4 Consensus size: 46
106248580 ATAATTCTAT
106248590 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * * *
106248636 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAATATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * *
106248682 CTCCCTG-A--CCACAGTGGAGTACATTGAAGCCAAT--A-ACTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAG--ATTGCAGA-TCT-TGC
106248724 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
*
106248770 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
106248787 CAAAGCAGGT
Statistics
Matches: 107, Mismatches: 30, Indels: 28
0.65 0.18 0.17
Matches are distributed among these distances:
42 8 0.07
43 14 0.13
44 4 0.04
45 25 0.23
46 56 0.52
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
Found at i:106248857 original size:134 final size:134
Alignment explanation
Indices: 106248483--106248862 Score: 607
Period size: 134 Copynumber: 2.8 Consensus size: 134
106248473 GAAGTGGATC
*
106248483 GAAGATTGCAGATCTTGCCTTCCTGTATTTAGCAGCGAAGCAGATCAAAAGATGGCAGATTTTAC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGAT-AAAAGATGGCAGATTTTAC
*
106248548 CTCCCTGACCACAGTGGAGTACACTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAAT
65 CTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAAT
106248613 AGATT
130 AGATT
* *
106248618 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAATATGGCAGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATAAAAGATGGCAGATTTTACC
* *
106248683 TCCCTGACCACAGTGGAGTACATTGAAGCCAATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATA
106248748 GATT
131 GATT
* * ** * *
106248752 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGGTTGAAGACGGCGGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATAAAAGATGGCAGATTTTACC
** * *
106248817 TCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTATCTCCC
66 TCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCC
106248863 GGGGCAAGAA
Statistics
Matches: 226, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
134 182 0.81
135 44 0.19
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (134 bp):
GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATAAAAGATGGCAGATTTTACC
TCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATA
GATT
Found at i:106248924 original size:44 final size:45
Alignment explanation
Indices: 106248870--106250036 Score: 1021
Period size: 44 Copynumber: 26.5 Consensus size: 45
106248860 CCCGGGGCAA
* * *
106248870 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
106248914 GAAATAGATCGAAGAT-GCAGATCTTATCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
106248958 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * *
106249002 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
106249046 GAAATGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
106249090 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * *
106249134 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
106249178 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
106249222 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
106249266 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * * * *
106249310 GAAATGGATCAAAGATAACAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * * *
106249355 GAAGTAGATCGCAGAAAGCAGATCTTGTTTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * ** *
106249399 GAAGTAGATCAAAGATAACAGGTCCGGTCTTTCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * * *
106249443 GAAGTGGATCGACGAT-GCAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
106249487 GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
106249531 GAAGTAGATCGAAGAT-GCAGAT-TCTGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCT-TGTCTTCCTATATTGGTAGT
* * * *
106249574 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
106249618 GAAGTAGATCAAAGATAACAGGT-TCGGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCT-TGTCTTCCTATATTGGTAGT
* * * * * *
106249662 GAAGTGGATCGACGAT-GCAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
106249706 GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
106249750 GAAGTAGATCGAAGAT-GCAGAT-TCTGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCT-TGTCTTCCTATATTGGTAGT
* * * *
106249793 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
106249837 GAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* *
106249881 GAAGT-GCATCGACGAT-GCAGAT-TCTGTCTTCCTATGTTGGTAG-
1 GAAGTAG-ATCGAAGATAGCAGATCT-TGTCTTCCTATATTGGTAGT
* * * * * * *
106249924 GAAGTGGATCGACGAT-GCAGGTCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * * *
106249968 GAAGTAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATA-TTGGTAGT
* *
106250014 GAAGCAGATCGAAGATGGCAGAT
1 GAAGTAGATCGAAGATAGCAGAT
106250037 TTTACCTCCC
Statistics
Matches: 888, Mismatches: 199, Indels: 70
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.00
43 234 0.26
44 472 0.53
45 155 0.17
46 25 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
Found at i:106249107 original size:132 final size:132
Alignment explanation
Indices: 106248870--106249605 Score: 1195
Period size: 132 Copynumber: 5.6 Consensus size: 132
106248860 CCCGGGGCAA
* *
106248870 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATAGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
* *
106248935 TCTTATCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
106249000 GT
131 GT
*
106249002 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
106249067 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
106249132 GT
131 GT
* *
106249134 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
106249199 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
106249264 GT
131 GT
* * * *
106249266 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAATGGATCAAAGATAACAG
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGAT-GCAG
*
106249331 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTTTTCATGTATTGG
65 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG
106249396 CGT
130 CGT
* * * ** * * *
106249399 GAAGTAGATCAAAGATAACAGGTCCGGTCTTTCTATATTGGTAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
* * *
106249464 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
106249529 GT
131 GT
* * * * *
106249531 GAAGTAGATCGAAGAT-GCAGATTCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAG
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAG-ATGCAG
106249595 ATCTTGTCTTC
65 ATCTTGTCTTC
106249606 ATGTATTGGC
Statistics
Matches: 566, Mismatches: 36, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
131 34 0.06
132 411 0.73
133 121 0.21
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:106249990 original size:219 final size:220
Alignment explanation
Indices: 106248870--106250028 Score: 1136
Period size: 219 Copynumber: 5.3 Consensus size: 220
106248860 CCCGGGGCAA
* * * * *
106248870 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAATAGATCGAAG-ATGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAAAGCA
* *** * * * * * * *
106248933 GATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATGTATT
66 GATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAA-CAGGTCCTGTCTTCCTATATT
* * * * * * *
106248997 GG-CGTGAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAATGGATCGAAG
129 GGTAG-GAAGT-GATCGACGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * *
106249060 ATGCAGATCTTGTCTTCCCATATTGGTGGC
191 ATGCAGATCTTATCTTCCTATATTGGTCGC
* * * * * * **
106249090 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAAAGCA
* * * * * * * * * * *
106249154 GATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTG
66 GATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTATATTG
* * * * * *
106249217 GTGGCGAAGTAGATCG-CAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
130 GTAG-GAAGT-GATCGAC-G-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG
* * * *
106249280 ATAGCAGGTCCTATCTTCCTATATTGATAG-
191 AT-GCAGATCTTATCTTCCTATATTGGTCGC
* * * * * * *
106249310 GAAATGGATCAAAGATAACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAAAGCA
* * *
106249375 GATCTTGTTTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCGGTCTTTCTATATTGG
66 GATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTATATTGG
* * * *
106249440 TAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
131 TAGGAAGT-GATCGACGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATG
* * *
106249505 CAGATCTTATCTTCATGTATTGG-CGT
194 CAGATCTTATCTTCCTATATTGGTCGC
106249531 GAAGTAGATCGAAGAT-GCAGAT-TCTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGC
1 GAAGTAGATCGAAGATAGCAGATCT-TGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAAAGC
* *
106249593 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTTCGGTCTTCCTATATTG
65 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTATATTG
* * * *
106249658 GTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
130 GTAGGAAGT-GATCGACGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG-AT
* * *
106249723 GCAGATCTTATCTTCATGTATTGG-CGT
193 GCAGATCTTATCTTCCTATATTGGTCGC
106249750 GAAGTAGATCGAAGAT-GCAGAT-TCTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGC
1 GAAGTAGATCGAAGATAGCAGATCT-TGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAAAGC
106249812 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTATATTG
65 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTATATTG
* * *
106249877 GTAGGAAGTGCATCGACGATGCAGAT-TCTGTCTTCCTATGTTGGTAG-GAAGTGGATCGACGAT
130 GTAGGAAGTG-ATCGACGATGCAGATCT-TGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
106249940 GCAGGTCTTGTCTTCCCATACTGGTGGC
193 GCAGATCTTATCTTCCTATATTGGTCGC
* * * * * *
106249968 GAAGTAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATA-TTGGTAGCGAAGTAGATCGAAGA
106250029 TGGCAGATTT
Statistics
Matches: 803, Mismatches: 113, Indels: 45
0.84 0.12 0.05
Matches are distributed among these distances:
217 19 0.02
218 30 0.04
219 375 0.47
220 191 0.24
221 166 0.21
222 22 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (220 bp):
GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAAAGCA
GATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTATATTGG
TAGGAAGTGATCGACGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCA
GATCTTATCTTCCTATATTGGTCGC
Found at i:106250132 original size:95 final size:95
Alignment explanation
Indices: 106250019--106250397 Score: 592
Period size: 95 Copynumber: 4.0 Consensus size: 95
106250009 GCAGCGAAGC
106250019 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTAT
*
106250084 CTCCCTGTATTTGGCATTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
106250114 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTAT
* *
106250179 CTCCCTGTATTTGGCAG-CG---A-A--GC
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* ** * *
106250202 AGATCAAAGATGGCAGATTTTACCTTCATGTGACTACAGTGGAGTACATTGAAGCCGATGACTCT
1 AGATCGAAGATGGCAGATTTTACC-TC-CCTGACTACAATGGAGTACATTGAAGCCGATAACTCT
*
106250267 ATCTTCCTGTATTTGGCAGTGGAATAGATTGA
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
106250299 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTAT
*
106250364 CTCCCTGTATCTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
106250394 AGAT
1 AGAT
106250398 TGCAGATCTT
Statistics
Matches: 258, Mismatches: 17, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
88 24 0.09
89 2 0.01
90 52 0.20
91 2 0.01
94 2 0.01
95 150 0.58
96 2 0.01
97 24 0.09
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (95 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:106250309 original size:185 final size:183
Alignment explanation
Indices: 106249999--106250380 Score: 665
Period size: 185 Copynumber: 2.1 Consensus size: 183
106249989 ATCTTGCCTT
*
106249999 CCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTAC
1 CCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTAC
*
106250064 ATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCATTGGAATAGATTGAAGATCGAAGATGGCA
66 ATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCA
106250129 GATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTATCTC
131 GATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTATCTC
** *
106250182 CCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTTCATGTGACTACAGTGGAGT
1 CCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACC-TC-CCTGACTACAATGGAGT
* *
106250247 ACATTGAAGCCGATGACTCTATCTTCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGG
64 ACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGG
*
106250312 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
129 CAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTATCTC
*
106250367 CCTGTATCTGGCAG
1 CCTGTATTTGGCAG
106250381 TGGAATAGAT
Statistics
Matches: 188, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
183 43 0.23
184 2 0.01
185 143 0.76
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (183 bp):
CCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTAC
ATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCA
GATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAACTCTATCTC
Found at i:106250516 original size:134 final size:134
Alignment explanation
Indices: 106250299--106250593 Score: 554
Period size: 134 Copynumber: 2.2 Consensus size: 134
106250289 AATAGATTGA
*
106250299 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCATGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
106250364 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCCGTATTTGGCAGCG
106250429 AAGC
131 AAGC
106250433 AGATCGAAGATGGCAGATTTTACCTCCATGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCATGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
106250498 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCCGTATTTGGCAGCG
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCCGTATTTGGCAGCG
106250563 AAGC
131 AAGC
*
106250567 AGATCGAAAATGGCAGATTTTACCTCC
1 AGATCGAAGATGGCAGATTTTACCTCC
106250594 CTGCATTCAA
Statistics
Matches: 157, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
134 157 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (134 bp):
AGATCGAAGATGGCAGATTTTACCTCCATGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCCGTATTTGGCAGCG
AAGC
Found at i:106252207 original size:25 final size:22
Alignment explanation
Indices: 106252156--106252210 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
106252146 TATTATTTTA
* *
106252156 TGTAAATATTTTCTAAATTTAT
1 TGTATATATTTTCTAAAATTAT
106252178 TGTATATATTTTCTTTAAAATTAT
1 TGTATATATTTTC--TAAAATTAT
106252202 TCGTATATA
1 T-GTATATA
106252211 GCTTGGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 12 0.43
24 9 0.32
25 7 0.25
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (22 bp):
TGTATATATTTTCTAAAATTAT
Found at i:106253356 original size:19 final size:18
Alignment explanation
Indices: 106253319--106253370 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
106253309 AATTTTATTC
106253319 ATTTATTTA-TTAT-TATT
1 ATTTATTTATTTATGT-TT
106253336 ATTGT-TTTACTTTATGTTT
1 ATT-TATTTA-TTTATGTTT
106253355 ATTTATTTATTTATGT
1 ATTTATTTATTTATGT
106253371 GTCCATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
17 7 0.23
18 9 0.30
19 13 0.43
20 1 0.03
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (18 bp):
ATTTATTTATTTATGTTT
Found at i:106253465 original size:17 final size:18
Alignment explanation
Indices: 106253433--106253470 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
106253423 CTTGTTATTG
*
106253433 TATATAATTGATTTTTTT
1 TATATAATTGATTTTTGT
*
106253451 TATAT-ATTTATTTTTGT
1 TATATAATTGATTTTTGT
106253468 TAT
1 TAT
106253471 TTTTGCTCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
TATATAATTGATTTTTGT
Found at i:106253487 original size:15 final size:15
Alignment explanation
Indices: 106253467--106253500 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
106253457 TTTATTTTTG
*
106253467 TTATTTTTGCTCGTA
1 TTATTTTTGCTCGCA
106253482 TTATTTTTGCTCGCA
1 TTATTTTTGCTCGCA
106253497 TTAT
1 TTAT
106253501 CGTAATTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.59
Consensus pattern (15 bp):
TTATTTTTGCTCGCA
Found at i:106261012 original size:17 final size:17
Alignment explanation
Indices: 106260992--106261025 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
106260982 TATATACCCC
106260992 TTTTTTTA-ATATTATAT
1 TTTTTTTACATA-TATAT
106261009 TTTTTTTACATATATAT
1 TTTTTTTACATATATAT
106261026 GTAGATATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTTTTACATATATAT
Found at i:106261081 original size:18 final size:20
Alignment explanation
Indices: 106261056--106261099 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
106261046 CTACTTAAAC
106261056 ATATTTTT-TCACACTT-CAT
1 ATATTTTTAT-ACACTTACAT
106261075 A-ATTTTTATACACTTACAT
1 ATATTTTTATACACTTACAT
106261094 ATATTT
1 ATATTT
106261100 ATGTATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 12 0.55
19 6 0.27
20 4 0.18
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (20 bp):
ATATTTTTATACACTTACAT
Found at i:106262663 original size:191 final size:192
Alignment explanation
Indices: 106262153--106262987 Score: 1609
Period size: 192 Copynumber: 4.3 Consensus size: 192
106262143 GGTGTCAACA
106262153 GTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
1 GTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
*
106262218 TCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGATTT
66 TCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
*
106262283 GAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATATTTTAAATTGACTCATATTGCGAGAG
131 GAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAG
106262345 GTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
1 GTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
106262410 TCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
66 TCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
106262475 GAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAG
131 GAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAG
*
106262537 GTAAGTTAAGCCTTTTAA-TTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
1 GTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
*
106262601 TCAAGACACGTTGAGGTATTTTTAAATTTTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTT
66 TCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
*
106262666 GAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGGCTCATATTGCGAGAG
131 GAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAG
106262728 GTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
1 GTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
106262793 TCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
66 TCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
106262858 GAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAG
131 GAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAG
106262920 GTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
1 GTGAGTTAAGCCTTTTAATTTTTGTTTTTC-AAAATCAACTCATATTGCGAGAAATGAGTTGAGC
106262985 CTC
65 CTC
106262988 GGGGCACGCC
Statistics
Matches: 633, Mismatches: 8, Indels: 3
0.98 0.01 0.00
Matches are distributed among these distances:
191 188 0.30
192 408 0.64
193 37 0.06
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (192 bp):
GTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
TCAAGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
GAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAG
Found at i:106262879 original size:383 final size:384
Alignment explanation
Indices: 106262156--106262987 Score: 1603
Period size: 383 Copynumber: 2.2 Consensus size: 384
106262146 GTCAACAGTG
106262156 AGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
1 AGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
*
106262221 AGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGATTTGAG
66 AGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
106262286 CCTCGGGGCACGCCGAGGTATTTTTAGTTTATATTTTAAATTGACTCATATTGCGAGAGGTGAGT
131 CCTCGGGGCACGCCGAGGTATTTTTAGTTTATATTTTAAATTGACTCATATTGCGAGAGGTGAGT
106262351 TAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
196 TAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
106262416 CACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
261 CACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
106262481 CGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTA
326 CGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTA
106262540 AGTTAAGCCTTTTAA-TTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
1 AGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
*
106262604 AGACACGTTGAGGTATTTTTAAATTTTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
66 AGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
* *
106262669 CCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGGCTCATATTGCGAGAGGTGAGT
131 CCTCGGGGCACGCCGAGGTATTTTTAGTTTATATTTTAAATTGACTCATATTGCGAGAGGTGAGT
106262734 TAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
196 TAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
106262799 CACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
261 CACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
*
106262864 CGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTG
326 CGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTA
106262923 AGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
1 AGTTAAGCCTTTTAATTTTTGTTTTTC-AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
106262988 GGGGCACGCC
Statistics
Matches: 441, Mismatches: 5, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
383 378 0.86
384 26 0.06
385 37 0.08
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (384 bp):
AGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGACACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
CCTCGGGGCACGCCGAGGTATTTTTAGTTTATATTTTAAATTGACTCATATTGCGAGAGGTGAGT
TAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
CACGTTGAGGTATTTTTAAATTTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
CGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTA
Found at i:106262954 original size:123 final size:123
Alignment explanation
Indices: 106262827--106263145 Score: 548
Period size: 123 Copynumber: 2.6 Consensus size: 123
106262817 AATTTTTTAA
106262827 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
106262892 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
*
106262950 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
106263015 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* * ** * * *
106263073 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCAC--GCCGAGGTATTTTTAGTT
106263138 TATGTTTT
64 TATGTTTT
106263146 TTTCAATCTA
Statistics
Matches: 185, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
123 162 0.88
125 23 0.12
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (123 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:106262968 original size:54 final size:54
Alignment explanation
Indices: 106262904--106263109 Score: 160
Period size: 54 Copynumber: 3.5 Consensus size: 54
106262894 TTTTAAATTG
106262904 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
** * *** ***
106262958 ACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA---ATTTTT-GTTT-T-TCAAAA
**
106263023 ATTG
51 ATCA
106263027 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
* *
106263081 ACTCATATTGCAAGAGGTGAGTTGAGCCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT
106263110 CGGCTCACAT
Statistics
Matches: 113, Mismatches: 24, Indels: 30
0.68 0.14 0.18
Matches are distributed among these distances:
54 58 0.51
55 1 0.01
56 4 0.04
57 6 0.05
60 1 0.01
63 1 0.01
66 6 0.05
67 4 0.04
68 1 0.01
69 31 0.27
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (54 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
Found at i:106263150 original size:16 final size:17
Alignment explanation
Indices: 106263129--106263162 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
106263119 TGCTGAGGTA
*
106263129 TTTTCAATTTATG-TTT
1 TTTTCAATCTATGCTTT
106263145 TTTTCAATCTATGCTTT
1 TTTTCAATCTATGCTTT
106263162 T
1 T
106263163 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTCAATCTATGCTTT
Found at i:106263274 original size:176 final size:182
Alignment explanation
Indices: 106263068--106263479 Score: 491
Period size: 192 Copynumber: 2.2 Consensus size: 182
106263058 TAATTTTTGT
*
106263068 TTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CACACGCTGAGGTATTT
* *
106263132 TC-AA-TTT-A-TGTTTTTTTCAATCTATGCT-TTTC-AAAAATCAACTTATATTGCGAGAGGTG
64 TCAAATTTTAATTGTTTTTTTCAATCTATG-TGTTTCAAAAAATCAACTCATATTGCAAGAGGTG
*
106263191 AGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTGCTTTACTAA-TTCTAC
128 AGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTACTTTAC-AATTTCTAC
* * *
106263246 TTTTC-AAATCAACTCATGTTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTC
1 TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTC
* * *
106263310 AAATTCTGTTTTTAATTTCTGTTTTTTTTAATTTCTGTGTTTCAAAAAAAATCAACTCATATTGC
66 AAA------TTTTAA--T-TGTTTTTTTCAATCTATGTGTTTC--AAAAAATCAACTCATATTGC
* * **
106263375 AAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTACTTTTCAATTTCTGT
120 AAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTACTTTACAATTTCTAC
106263438 TTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
106263480 TTTAATTTCT
Statistics
Matches: 197, Mismatches: 16, Indels: 26
0.82 0.07 0.11
Matches are distributed among these distances:
176 51 0.26
177 5 0.03
178 5 0.03
184 3 0.02
185 1 0.01
188 1 0.01
189 19 0.10
191 2 0.01
192 77 0.39
194 33 0.17
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (182 bp):
TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTC
AAATTTTAATTGTTTTTTTCAATCTATGTGTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGT
TGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTACTTTACAATTTCTAC
Found at i:106263278 original size:85 final size:87
Alignment explanation
Indices: 106263068--106263317 Score: 285
Period size: 91 Copynumber: 2.8 Consensus size: 87
106263058 TAATTTTTGT
106263068 TTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CAC--GCTGAGGTATTT
* * **
106263132 TCAATTTATGTTTTTTTCAATCTATGC
62 TCAATTTCTGCTTTACTCAATCTA-GC
* *
106263159 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTATTTTC
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCCACGCTGAGGTATTTTC
106263223 AATTTCTGCTTTACT-AATTCTA-C
64 AATTTCTGCTTTACTCAA-TCTAGC
* * *
106263246 TTTTC-AAATCAACTCATGTTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTC
1 TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG-C-CACGCTGAGGTATTTTC
*
106263310 AAATTCTG
64 AATTTCTG
106263318 TTTTTAATTT
Statistics
Matches: 141, Mismatches: 12, Indels: 16
0.83 0.07 0.09
Matches are distributed among these distances:
84 3 0.02
85 32 0.23
87 29 0.21
88 2 0.01
89 29 0.21
91 44 0.31
93 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (87 bp):
TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACGCTGAGGTATTTTCAA
TTTCTGCTTTACTCAATCTAGC
Found at i:106263507 original size:54 final size:55
Alignment explanation
Indices: 106263423--106263640 Score: 315
Period size: 54 Copynumber: 4.1 Consensus size: 55
106263413 TCAATTTCTA
* *
106263423 CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
106263478 CTTTT-AATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
106263532 C--TT---TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
106263583 CTTTTGCAAATTCT-GTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
1 CTTTT-CAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
106263638 CTT
1 CTT
106263641 GGCTCACGTG
Statistics
Matches: 149, Mismatches: 7, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
50 12 0.08
51 35 0.23
52 2 0.01
53 2 0.01
54 47 0.32
55 42 0.28
56 5 0.03
57 4 0.03
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (55 bp):
CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
Found at i:106263944 original size:30 final size:31
Alignment explanation
Indices: 106263910--106264011 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
106263900 AAATAAAAAA
*
106263910 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
106263940 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
106263970 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
106264000 AAATTTCATTTT
1 AAATTTCATTTT
106264012 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Found at i:106264320 original size:11 final size:12
Alignment explanation
Indices: 106264279--106264340 Score: 58
Period size: 11 Copynumber: 5.2 Consensus size: 12
106264269 CTAGACTTTG
*
106264279 AAGAAGAAGAAGG
1 AAGAAGAA-AAGA
*
106264292 AATAAGAAAAGA
1 AAGAAGAAAAGA
106264304 GGAAGAAGAAAA-A
1 --AAGAAGAAAAGA
106264317 AAGAA-AAAAGA
1 AAGAAGAAAAGA
106264328 AA-AAGAAAAGA
1 AAGAAGAAAAGA
106264339 AA
1 AA
106264341 TAATAAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
10 6 0.14
11 16 0.38
12 3 0.07
13 8 0.19
14 9 0.21
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (12 bp):
AAGAAGAAAAGA
Found at i:106264349 original size:18 final size:18
Alignment explanation
Indices: 106264306--106264340 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
106264296 AGAAAAGAGG
106264306 AAGAAGAAA-AAAAGAAAA
1 AAGAA-AAAGAAAAGAAAA
106264324 AAGAAAAAGAAAAGAAA
1 AAGAAAAAGAAAAGAAA
106264341 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (18 bp):
AAGAAAAAGAAAAGAAAA
Found at i:106264437 original size:15 final size:14
Alignment explanation
Indices: 106264416--106264454 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
106264406 GTAGCCCAAG
106264416 AAAAAACAACAAAAA
1 AAAAAACAA-AAAAA
*
106264431 CAAAAACAAAAAAA
1 AAAAAACAAAAAAA
106264445 AAAGAAACAA
1 AAA-AAACAA
106264455 GCCCCAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.85, C:0.13, G:0.03, T:0.00
Consensus pattern (14 bp):
AAAAAACAAAAAAA
Found at i:106264452 original size:21 final size:22
Alignment explanation
Indices: 106264428--106264472 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
106264418 AAAACAACAA
106264428 AAACAA-AAACAAAAAAAAAAG
1 AAACAAGAAACAAAAAAAAAAG
***
106264449 AAACAAGCCCCAAAAAAAAAAG
1 AAACAAGAAACAAAAAAAAAAG
106264471 AA
1 AA
106264473 GAGCAGGCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.78, C:0.16, G:0.07, T:0.00
Consensus pattern (22 bp):
AAACAAGAAACAAAAAAAAAAG
Found at i:106264620 original size:10 final size:10
Alignment explanation
Indices: 106264605--106264669 Score: 67
Period size: 10 Copynumber: 6.1 Consensus size: 10
106264595 GGCCCAGCAG
106264605 AGAAAAAAAA
1 AGAAAAAAAA
106264615 AGAAAAGAAAA
1 AGAAAA-AAAA
* *
106264626 AGAAGGAAAAG
1 AGAA-AAAAAA
*
106264637 AGAAGAAAAA
1 AGAAAAAAAA
106264647 AGAAGGAAAAAA
1 AGAA--AAAAAA
106264659 AGAAAAAAAA
1 AGAAAAAAAA
106264669 A
1 A
106264670 AGGTTCAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
10 22 0.47
11 15 0.32
12 10 0.21
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AGAAAAAAAA
Found at i:106264627 original size:11 final size:11
Alignment explanation
Indices: 106264605--106264671 Score: 52
Period size: 11 Copynumber: 6.2 Consensus size: 11
106264595 GGCCCAGCAG
106264605 AGAAAA-AAAA
1 AGAAAAGAAAA
106264615 AGAAAAGAAAA
1 AGAAAAGAAAA
*
106264626 AG--AAGGAAA
1 AGAAAAGAAAA
*
106264635 AGAGAAGAAAAA
1 AGAAAAG-AAAA
106264647 AGAAGGAA-AAAA
1 AGAA--AAGAAAA
*
106264659 AGAAAAAAAAA
1 AGAAAAGAAAA
106264670 AG
1 AG
106264672 GTTCAATTCG
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
9 8 0.17
10 8 0.17
11 15 0.32
12 14 0.30
14 2 0.04
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
AGAAAAGAAAA
Found at i:106264635 original size:21 final size:22
Alignment explanation
Indices: 106264610--106264671 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
106264600 AGCAGAGAAA
106264610 AAAAAAGAAAAGAAAAAGAAGG
1 AAAAAAGAAAAGAAAAAGAAGG
* *
106264632 AAAAGAGAAGA-AAAAAGAAGG
1 AAAAAAGAAAAGAAAAAGAAGG
*
106264653 AAAAAAAGAAAAAAAAAAG
1 -AAAAAAGAAAAGAAAAAG
106264672 GTTCAATTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.29
22 18 0.53
23 6 0.18
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAGAAGG
Found at i:106264836 original size:16 final size:17
Alignment explanation
Indices: 106264810--106264847 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
106264800 TTATATTTAT
106264810 ATTTTTAATTTAATTTG
1 ATTTTTAATTTAATTTG
* *
106264827 ATTTTT-ATTTTATTTT
1 ATTTTTAATTTAATTTG
106264843 ATTTT
1 ATTTT
106264848 AAATAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTTTAATTTAATTTG
Found at i:106265044 original size:18 final size:17
Alignment explanation
Indices: 106265000--106265466 Score: 204
Period size: 17 Copynumber: 26.8 Consensus size: 17
106264990 TCTATAATCC
* *
106265000 TCGTGCTTTTAAAAATTC
1 TCGTG-TTTCAAAAATTT
* *
106265018 TCATGTTTCAAAAATCT
1 TCGTGTTTCAAAAATTT
*
106265035 TCGTGCTTTC-AAAATTC
1 TCGTG-TTTCAAAAATTT
*
106265052 TAGTGTTTCAAAAATTT
1 TCGTGTTTCAAAAATTT
*
106265069 TCTTGTTTTCAGAAAAAATTT
1 TCGTG-TTTC---AAAAATTT
* *
106265090 TCGTGTTTTATAAATTT
1 TCGTGTTTCAAAAATTT
* * **
106265107 CCGTATTTTCAAAAA-AA
1 TCGT-GTTTCAAAAATTT
*
106265124 TCATGTCTTTCAAAAATTT
1 TC--GTGTTTCAAAAATTT
**
106265143 TCGTGTTTTCAAAAAAAATGA
1 TCGTG-TTTC---AAAAATTT
*
106265164 CCGTGTTTCAAAAATTT
1 TCGTGTTTCAAAAATTT
*
106265181 CCGTGTTTTCAAAAA-TT
1 TCGTG-TTTCAAAAATTT
*
106265198 TCGGTGTTTCAAAGATTT
1 TC-GTGTTTCAAAAATTT
*
106265216 TCGTGTTTTCAAAAA-CT
1 TCGTG-TTTCAAAAATTT
* * ***
106265233 CCGGTGATTTTAAAAAAAA
1 TC-GTG-TTTCAAAAATTT
106265252 TCGT-TTTCTAAAAAATTT
1 TCGTGTTTC--AAAAATTT
*
106265270 CCGTGTTTCAAAAATTT
1 TCGTGTTTCAAAAATTT
*
106265287 TCGTGTTTTAAAAATTT
1 TCGTGTTTCAAAAATTT
* *
106265304 TCGTGTTTTTAAAAATTC
1 TCGTG-TTTCAAAAATTT
* *
106265322 TCGTATTT---TAATTT
1 TCGTGTTTCAAAAATTT
* **
106265336 T--T-TTTAAGAAAAAAAT
1 TCGTGTTT--CAAAAATTT
* *
106265352 T-GTGTTTCAAAAAAATG
1 TCGTGTTTC-AAAAATTT
* * *
106265369 TCTTGTTTTAAAAATTC
1 TCGTGTTTCAAAAATTT
* *
106265386 TCGTGTTTCAAAAAATG
1 TCGTGTTTCAAAAATTT
*
106265403 TCGTGTTTTAAAAATTT
1 TCGTGTTTCAAAAATTT
**
106265420 TCGTGTTTCTGAAATTT
1 TCGTGTTTCAAAAATTT
* *
106265437 CCGTGTTT-AAAAATTC
1 TCGTGTTTCAAAAATTT
*
106265453 TCGTGTTTTAAAAA
1 TCGTGTTTCAAAAA
106265467 AAACTTTCAT
Statistics
Matches: 339, Mismatches: 76, Indels: 69
0.70 0.16 0.14
Matches are distributed among these distances:
11 3 0.01
12 1 0.00
14 5 0.01
16 23 0.07
17 169 0.50
18 100 0.29
19 9 0.03
20 7 0.02
21 22 0.06
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.44
Consensus pattern (17 bp):
TCGTGTTTCAAAAATTT
Found at i:106265062 original size:16 final size:16
Alignment explanation
Indices: 106265011--106265064 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
106265001 CGTGCTTTTA
106265011 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
106265027 AAAAATCTTCGTGCTTTC
1 AAAATTC-TAGTG-TTTC
106265045 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
106265061 AAAA
1 AAAA
106265065 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:106265151 original size:74 final size:72
Alignment explanation
Indices: 106265057--106265230 Score: 213
Period size: 74 Copynumber: 2.4 Consensus size: 72
106265047 AATTCTAGTG
* *** * *
106265057 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGTTTTATAAATTTCCGTATTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCA-AAAAAATGACCGTGTTTCAAAAATTTCCGTATTTTCAAAAA
*
106265122 AATCATGTC
65 AATC-GGTC
*
106265131 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCGTGTTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTC-AAAAAAATGACCGTGTTTCAAAAATTTCCGTATTTTCAAAAA
** *
106265196 TTTCGGTG
65 AATCGGTC
*
106265204 TTTCAAAGATTTTCGTGTTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAA
106265231 CTCCGGTGAT
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
72 5 0.06
73 23 0.26
74 58 0.67
75 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (72 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAATGACCGTGTTTCAAAAATTTCCGTATTTTCAAAAAA
ATCGGTC
Found at i:106265331 original size:35 final size:34
Alignment explanation
Indices: 106265164--106265332 Score: 119
Period size: 35 Copynumber: 4.8 Consensus size: 34
106265154 AAAAAAATGA
*
106265164 CCGTGTTTCAAAAATT-TCCGTGTTTTCAAAAATTT
1 CCGTGTTTCAAAAATTCT-CGTATTTT-AAAAATTT
* * * * *
106265199 CGGTGTTTCAAAGATTTTCGTGTTTTCAAAAA-CT
1 CCGTGTTTCAAAAATTCTCGTATTTT-AAAAATTT
* ***
106265233 CCGGTGATTTTAAAAAAAATCGT-TTTCTAAAAAATTT
1 CC-GTG-TTTCAAAAATTCTCGTATTT-T-AAAAATTT
* *
106265270 CCGTGTTTCAAAAATTTTCGTGTTTTAAAAATTT
1 CCGTGTTTCAAAAATTCTCGTATTTTAAAAATTT
* *
106265304 TCGTGTTTTTAAAAATTCTCGTATTTTAA
1 CCGTG-TTTCAAAAATTCTCGTATTTTAA
106265333 TTTTTTTTAA
Statistics
Matches: 108, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
34 14 0.13
35 67 0.62
36 24 0.22
37 3 0.03
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.44
Consensus pattern (34 bp):
CCGTGTTTCAAAAATTCTCGTATTTTAAAAATTT
Found at i:106265505 original size:17 final size:17
Alignment explanation
Indices: 106265485--106265522 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
106265475 ATTTTAAAAA
*
106265485 AAAAATTTTCGTG-CTT
1 AAAAATTCTCGTGTCTT
*
106265501 CAAAATTCTCGTGTCTT
1 AAAAATTCTCGTGTCTT
106265518 AAAAA
1 AAAAA
106265523 AAGTTTTCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (17 bp):
AAAAATTCTCGTGTCTT
Found at i:106266466 original size:3 final size:3
Alignment explanation
Indices: 106266458--106266487 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
106266448 TATATTATCT
106266458 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
106266488 AAGATATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:106271621 original size:16 final size:16
Alignment explanation
Indices: 106271596--106271645 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
106271586 TATCAATTAT
* *
106271596 ATTTTATTTAATTTAA
1 ATTTTTTTTAATTCAA
106271612 ATTTTTTTTAATTCAA
1 ATTTTTTTTAATTCAA
* *
106271628 ACTTTTTATTAAATCAA
1 A-TTTTTTTTAATTCAA
106271645 A
1 A
106271646 CAAAAGATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTTTTTTAATTCAA
Found at i:106271633 original size:17 final size:17
Alignment explanation
Indices: 106271597--106271646 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
106271587 ATCAATTATA
* *
106271597 TTTTATTTAATTTAAA-
1 TTTTTTTTAATTCAAAC
106271613 TTTTTTTTAATTCAAAC
1 TTTTTTTTAATTCAAAC
* *
106271630 TTTTTATTAAATCAAAC
1 TTTTTTTTAATTCAAAC
106271647 AAAAGATGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
16 14 0.48
17 15 0.52
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTTTTTAATTCAAAC
Found at i:106275776 original size:8 final size:7
Alignment explanation
Indices: 106275722--106275777 Score: 53
Period size: 7 Copynumber: 8.0 Consensus size: 7
106275712 TTCTACTTTT
106275722 ATTAAAA
1 ATTAAAA
106275729 ATT-AAA
1 ATTAAAA
**
106275735 ATTAATG
1 ATTAAAA
*
106275742 TTTAAAA
1 ATTAAAA
106275749 ATT-AAA
1 ATTAAAA
106275755 ATTAAAAA
1 ATT-AAAA
106275763 ATTAAAA
1 ATTAAAA
106275770 ATATAAAA
1 AT-TAAAA
106275778 TAAGTGATCA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
6 12 0.31
7 16 0.41
8 11 0.28
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (7 bp):
ATTAAAA
Found at i:106278534 original size:25 final size:25
Alignment explanation
Indices: 106278506--106278555 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
106278496 CAAGTTTCCA
*
106278506 TAAACTTAAGTAAGCTTCGTTAATG
1 TAAACTTAAGTAAGCTTCATTAATG
106278531 TAAACTTAAGTAAGCTTCATTAATG
1 TAAACTTAAGTAAGCTTCATTAATG
106278556 ATACTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (25 bp):
TAAACTTAAGTAAGCTTCATTAATG
Found at i:106283211 original size:39 final size:40
Alignment explanation
Indices: 106283141--106283221 Score: 96
Period size: 39 Copynumber: 2.0 Consensus size: 40
106283131 AAAGATATAA
*
106283141 TTACTAAATTATATAAATTTATTTGATATTTT-TATAAAT
1 TTACTAAATTAAATAAATTTATTTGATATTTTATATAAAT
* *
106283180 TTACT-AATTAAATCAAATTTAATTTTA-ATTTTATATATAT
1 TTACTAAATTAAAT-AAATTT-ATTTGATATTTTATATAAAT
106283220 TT
1 TT
106283222 TTTAAAATCC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
38 7 0.19
39 16 0.44
40 13 0.36
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (40 bp):
TTACTAAATTAAATAAATTTATTTGATATTTTATATAAAT
Found at i:106283886 original size:27 final size:26
Alignment explanation
Indices: 106283855--106283907 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
106283845 ACTTGATCCA
*
106283855 ATTTATGTAATATACACAAAT-AATTAT
1 ATTTATATAATATA-A-AAATAAATTAT
106283882 ATTTATATAATATAAAAATAAATTAT
1 ATTTATATAATATAAAAATAAATTAT
106283908 TATATTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 7 0.29
27 13 0.54
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (26 bp):
ATTTATATAATATAAAAATAAATTAT
Done.