Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 333 of 333
Found at i:108450214 original size:20 final size:21
Alignment explanation
Indices: 108450186--108450224 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
108450176 TCATGAATAA
108450186 AAAGCAAAAGAT-TCTTTTCT
1 AAAGCAAAAGATATCTTTTCT
*
108450206 AAAGTAAAAGATATCTTTT
1 AAAGCAAAAGATATCTTTT
108450225 TTTATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (21 bp):
AAAGCAAAAGATATCTTTTCT
Found at i:108451679 original size:21 final size:21
Alignment explanation
Indices: 108451655--108451694 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
108451645 CCAATTTTCA
108451655 TTTTCTTCTTTT-ATTTTTTGC
1 TTTTCTT-TTTTGATTTTTTGC
*
108451676 TTTTGTTTTTTGATTTTTT
1 TTTTCTTTTTTGATTTTTT
108451695 TTAAAGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.05, C:0.07, G:0.07, T:0.80
Consensus pattern (21 bp):
TTTTCTTTTTTGATTTTTTGC
Found at i:108460234 original size:17 final size:18
Alignment explanation
Indices: 108460203--108460238 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
108460193 TTAATCATCG
108460203 ATTTTTTATTGAATTTTA
1 ATTTTTTATTGAATTTTA
108460221 ATTTTTTATT-AATTTTA
1 ATTTTTTATTGAATTTTA
108460238 A
1 A
108460239 ACAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (18 bp):
ATTTTTTATTGAATTTTA
Found at i:108464872 original size:61 final size:62
Alignment explanation
Indices: 108464759--108464877 Score: 177
Period size: 61 Copynumber: 1.9 Consensus size: 62
108464749 AAAAATCACT
* * * *
108464759 ACCACCACCATCGCGAAGCATCAGTTTCAAGAGCACAGAAACCAGTCCTTTCTAATTAGATC
1 ACCACCACCATCGCAAAGCACCAGTTTCAAGAGCACAAAAACCAGTCATTTCTAATTAGATC
* *
108464821 ACCACCACCATTGCAAAGCACCAG-TTCATGAGCACAAAAACCAGTCATTTCTAATTA
1 ACCACCACCATCGCAAAGCACCAGTTTCAAGAGCACAAAAACCAGTCATTTCTAATTA
108464878 TAATCTGGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
61 30 0.59
62 21 0.41
ACGTcount: A:0.36, C:0.30, G:0.13, T:0.21
Consensus pattern (62 bp):
ACCACCACCATCGCAAAGCACCAGTTTCAAGAGCACAAAAACCAGTCATTTCTAATTAGATC
Found at i:108465745 original size:22 final size:23
Alignment explanation
Indices: 108465714--108465767 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
108465704 TGGAATAGAG
*
108465714 TTAACTTTTACTATTTAA-AAAA
1 TTAACATTTACTATTTAACAAAA
* *
108465736 TTAACATTTATTATTTAACAAAC
1 TTAACATTTACTATTTAACAAAA
*
108465759 TTAATATTT
1 TTAACATTT
108465768 TTAAAGTCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 16 0.59
23 11 0.41
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (23 bp):
TTAACATTTACTATTTAACAAAA
Found at i:108469563 original size:4 final size:4
Alignment explanation
Indices: 108469548--108469618 Score: 101
Period size: 4 Copynumber: 18.0 Consensus size: 4
108469538 TGCCATCACA
* *
108469548 ACAT ATAT ACAT ACAT -CAA ACAT CACA- ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT -ACAT ACAT ACAT ACAT ACAT ACAT
108469595 ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT
108469619 CAAACACCAG
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
3 5 0.08
4 52 0.87
5 3 0.05
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:108481417 original size:25 final size:25
Alignment explanation
Indices: 108481383--108481433 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
108481373 ATCTTAGGTC
108481383 ATATGTCTTATATAAATATATAATA
1 ATATGTCTTATATAAATATATAATA
108481408 ATATGTCTTATATAAATATATAATA
1 ATATGTCTTATATAAATATATAATA
108481433 A
1 A
108481434 AAAAACACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (25 bp):
ATATGTCTTATATAAATATATAATA
Found at i:108483121 original size:16 final size:16
Alignment explanation
Indices: 108483099--108483155 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
108483089 AAGAGAATAT
108483099 ATTTTCTTTCTTTCTA
1 ATTTTCTTTCTTTCTA
* * *
108483115 TTTTTCTACTCATTC-A
1 ATTTTCT-TTCTTTCTA
*
108483131 ATTTTCTATCTTTCTA
1 ATTTTCTTTCTTTCTA
108483147 ATTTTCTTT
1 ATTTTCTTT
108483156 AATGTAAAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
15 5 0.16
16 22 0.69
17 5 0.16
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTTCTTTCTTTCTA
Found at i:108485319 original size:18 final size:18
Alignment explanation
Indices: 108485296--108485330 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
108485286 TAAAATGAAA
* *
108485296 TACTCCTTCTCCTTCTCC
1 TACTCCTACTCCCTCTCC
108485314 TACTCCTACTCCCTCTC
1 TACTCCTACTCCCTCTC
108485331 ATTATATATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.51, G:0.00, T:0.40
Consensus pattern (18 bp):
TACTCCTACTCCCTCTCC
Found at i:108488305 original size:28 final size:29
Alignment explanation
Indices: 108488258--108488315 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
108488248 GATTGAATAA
108488258 GTAAAACTTGGGATCCCATTAATTTAGTT
1 GTAAAACTTGGGATCCCATTAATTTAGTT
* * *
108488287 GTAAAA-TTGGTATGCCATTAGTTTAGTT
1 GTAAAACTTGGGATCCCATTAATTTAGTT
108488315 G
1 G
108488316 CTATGGAGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (29 bp):
GTAAAACTTGGGATCCCATTAATTTAGTT
Found at i:108488627 original size:57 final size:57
Alignment explanation
Indices: 108488539--108488653 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 57
108488529 TCGCTTTGAA
* * *
108488539 ATGAGAAAAATGATTCGTTGTTTATACTATAATTGCTGTTACGATCAATGCTAGGAT
1 ATGAGAAAAATGATTCGTTGTTTATACTATAATGGCTGTTACGATCAACGCAAGGAT
108488596 ATGAGAAAAATGATTCGTTGTTTATACTATAATGGCTGTTACGATCAACGCAAGGAT
1 ATGAGAAAAATGATTCGTTGTTTATACTATAATGGCTGTTACGATCAACGCAAGGAT
108488653 A
1 A
108488654 GGTCTTTAAC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.34
Consensus pattern (57 bp):
ATGAGAAAAATGATTCGTTGTTTATACTATAATGGCTGTTACGATCAACGCAAGGAT
Found at i:108492774 original size:12 final size:12
Alignment explanation
Indices: 108492757--108492791 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
108492747 CAAACGATCA
* *
108492757 AAGAAATGTGAG
1 AAGAAATATAAG
108492769 AAGAAATATAAG
1 AAGAAATATAAG
108492781 AAGAAATATAA
1 AAGAAATATAA
108492792 TAATTGCTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (12 bp):
AAGAAATATAAG
Found at i:108493392 original size:28 final size:28
Alignment explanation
Indices: 108493356--108493409 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
108493346 TTTATGTATA
*
108493356 TTTAGAATTTAGTCTTA-ATATTTTTATT
1 TTTAAAATTTAGT-TTATATATTTTTATT
*
108493384 TTTAAAATTTAGTTTATTTATTTTTA
1 TTTAAAATTTAGTTTATATATTTTTA
108493410 AAATTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.63
Consensus pattern (28 bp):
TTTAAAATTTAGTTTATATATTTTTATT
Found at i:108493677 original size:25 final size:27
Alignment explanation
Indices: 108493623--108493678 Score: 71
Period size: 25 Copynumber: 2.1 Consensus size: 27
108493613 TAAACTAATT
* * *
108493623 AATTATATTATAAATATTGAAGTATCA
1 AATTATATTATAAATATTAAAATATAA
108493650 AATTATATTA-AAA-ATTAAAATATAA
1 AATTATATTATAAATATTAAAATATAA
108493675 AATT
1 AATT
108493679 TAAATCTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 13 0.50
26 3 0.12
27 10 0.38
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (27 bp):
AATTATATTATAAATATTAAAATATAA
Found at i:108496082 original size:37 final size:37
Alignment explanation
Indices: 108496032--108496108 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
108496022 ATTATAAAAA
108496032 GTTATTTTTGTAACTTTCTAATTGAGTTGATGACTCG
1 GTTATTTTTGTAACTTTCTAATTGAGTTGATGACTCG
108496069 GTTATTTTTGTAACTTTCTAATTGAGTTGATGACTCG
1 GTTATTTTTGTAACTTTCTAATTGAGTTGATGACTCG
108496106 GTT
1 GTT
108496109 GAGAGTGATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.21, C:0.10, G:0.19, T:0.49
Consensus pattern (37 bp):
GTTATTTTTGTAACTTTCTAATTGAGTTGATGACTCG
Found at i:108507302 original size:15 final size:15
Alignment explanation
Indices: 108507266--108507302 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
108507256 AGATTTAATA
108507266 ATTATATTTTAATTT
1 ATTATATTTTAATTT
108507281 ATT-TATTTTAAATTT
1 ATTATATTTT-AATTT
108507296 -TTATATT
1 ATTATATT
108507303 CTTCTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTATATTTTAATTT
Found at i:108519904 original size:2 final size:2
Alignment explanation
Indices: 108519899--108519931 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
108519889 GTGTGTGTGT
108519899 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
108519932 GGGGCAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:108523045 original size:4 final size:4
Alignment explanation
Indices: 108523036--108523063 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
108523026 GAAATTGGAT
108523036 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
108523064 ATAATAACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:108546033 original size:32 final size:32
Alignment explanation
Indices: 108545997--108546057 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
108545987 CAAAATATTT
*
108545997 ATTAAATTATTCAAAAGTTTTTATTTAAGTTA
1 ATTAAATTATTCAAAAGCTTTTATTTAAGTTA
**
108546029 ATTAAATTATTTGAAAGCTTTTATTTAAG
1 ATTAAATTATTCAAAAGCTTTTATTTAAG
108546058 ATACAGAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.49
Consensus pattern (32 bp):
ATTAAATTATTCAAAAGCTTTTATTTAAGTTA
Found at i:108554149 original size:13 final size:13
Alignment explanation
Indices: 108554127--108554164 Score: 60
Period size: 12 Copynumber: 3.0 Consensus size: 13
108554117 ATTTGTATTT
108554127 TAAAATTATAAAA
1 TAAAATTATAAAA
*
108554140 TAAGATTAT-AAA
1 TAAAATTATAAAA
108554152 TAAAATTATAAAA
1 TAAAATTATAAAA
108554165 CTATTTGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (13 bp):
TAAAATTATAAAA
Found at i:108554405 original size:104 final size:104
Alignment explanation
Indices: 108554225--108554415 Score: 294
Period size: 104 Copynumber: 1.8 Consensus size: 104
108554215 AAATTCTTTT
* *
108554225 GAAGATACTTTAATTTCATCAAAAAATCATACCATCATTTGATATAACAATAAATTAATTGCTTG
1 GAAGATACGTTAATTTCATCAAAAAATCATACCACCATTTGATATAACAATAAATTAATTGCTTG
*
108554290 ATTTGTAAGAAATATTTAGTAATAGGGACAAACTCTATG
66 ATTAGTAAGAAATATTTAGTAATAGGGACAAACTCTATG
* * *
108554329 GAAGATACGTTAATTTCATCAAAAAATCATACGACCATTTGAT-TCAATAATAAATTCATTGCTT
1 GAAGATACGTTAATTTCATCAAAAAATCATACCACCATTTGATAT-AACAATAAATTAATTGCTT
* *
108554393 GATTAGTAAGAAATCTTTCGTAA
65 GATTAGTAAGAAATATTTAGTAA
108554416 CAAGGCAGGT
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
103 1 0.01
104 77 0.99
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.35
Consensus pattern (104 bp):
GAAGATACGTTAATTTCATCAAAAAATCATACCACCATTTGATATAACAATAAATTAATTGCTTG
ATTAGTAAGAAATATTTAGTAATAGGGACAAACTCTATG
Found at i:108560212 original size:23 final size:24
Alignment explanation
Indices: 108560186--108560233 Score: 89
Period size: 23 Copynumber: 2.0 Consensus size: 24
108560176 TAACACAACT
108560186 CTCTCTTAAACTGTTA-GTTATTA
1 CTCTCTTAAACTGTTACGTTATTA
108560209 CTCTCTTAAACTGTTACGTTATTA
1 CTCTCTTAAACTGTTACGTTATTA
108560233 C
1 C
108560234 ATAATTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.25, C:0.21, G:0.08, T:0.46
Consensus pattern (24 bp):
CTCTCTTAAACTGTTACGTTATTA
Found at i:108575390 original size:24 final size:25
Alignment explanation
Indices: 108575350--108575405 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
108575340 TACAATTACT
*
108575350 AATTTTTAATAATAAAAA-TAGATTA
1 AATTTTTAATAAGAAAAATTA-ATTA
*
108575375 AATTTTTAAT-AGAAAAATTAATTT
1 AATTTTTAATAAGAAAAATTAATTA
108575399 AATTTTT
1 AATTTTT
108575406 CATTTAACGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 16 0.57
25 12 0.43
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (25 bp):
AATTTTTAATAAGAAAAATTAATTA
Found at i:108575391 original size:25 final size:24
Alignment explanation
Indices: 108575350--108575405 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
108575340 TACAATTACT
108575350 AATTTTTAATAATAAAAATAGATTA
1 AATTTTTAATAATAAAAATA-ATTA
* *
108575375 AATTTTTAATAGA-AAAATTAATTT
1 AATTTTTAATA-ATAAAAATAATTA
108575399 AATTTTT
1 AATTTTT
108575406 CATTTAACGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 10 0.36
25 17 0.61
26 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (24 bp):
AATTTTTAATAATAAAAATAATTA
Found at i:108576419 original size:114 final size:115
Alignment explanation
Indices: 108576217--108576444 Score: 332
Period size: 114 Copynumber: 2.0 Consensus size: 115
108576207 AAGTTTTCAT
* ** * *
108576217 GTGACTATTGTGAGAATACTTTTAAGTAGAAAATCGTGCAACAATTATATTTATGTAGCGCGACG
1 GTGACTATTGTGACAATACTTTTAAGTAGAAAATCACGCAACAATTACATTCATGTAGCGCGACG
*
108576282 ATTCTATTGTTCACATCTCTCTTGCTATTTATTTATTTGGTTAAGAAAAG
66 ATTCTATTATTCACATCTCTCTTGCTATTTATTTATTTGGTTAAGAAAAG
* *
108576332 GTGACTATTGTGACAATAC-TTTAAGTAGAAAATCACGCGACAATTACATTCATGTAGTGCGACG
1 GTGACTATTGTGACAATACTTTTAAGTAGAAAATCACGCAACAATTACATTCATGTAGCGCGACG
* * * * *
108576396 ATTTTATTATTCACATTTTTCTTGTTGTTTATTTATTTGGTTAAGAAAA
66 ATTCTATTATTCACATCTCTCTTGCTATTTATTTATTTGGTTAAGAAAA
108576445 AGGTAAAGCA
Statistics
Matches: 100, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
114 82 0.82
115 18 0.18
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.40
Consensus pattern (115 bp):
GTGACTATTGTGACAATACTTTTAAGTAGAAAATCACGCAACAATTACATTCATGTAGCGCGACG
ATTCTATTATTCACATCTCTCTTGCTATTTATTTATTTGGTTAAGAAAAG
Found at i:108580117 original size:23 final size:23
Alignment explanation
Indices: 108580091--108580184 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
108580081 AAGTTAGAAG
108580091 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
108580114 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
108580137 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
108580160 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
108580183 AG
1 AG
108580185 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:108580488 original size:58 final size:58
Alignment explanation
Indices: 108580418--108580531 Score: 210
Period size: 58 Copynumber: 2.0 Consensus size: 58
108580408 CAACTACAAA
*
108580418 TTGGTATCAGAGCCTTGTTCGATCGAAATAAACAATTCTATTCTTCTTTCTTCCGTCT
1 TTGGTATCAGAGCCTTGTTCGATCGAAATAAACAATTCTATTCCTCTTTCTTCCGTCT
*
108580476 TTGGTATCAGAGCCTTGTTCGATCGAAATGAACAATTCTATTCCTCTTTCTTCCGT
1 TTGGTATCAGAGCCTTGTTCGATCGAAATAAACAATTCTATTCCTCTTTCTTCCGT
108580532 TCCCCAATTA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (58 bp):
TTGGTATCAGAGCCTTGTTCGATCGAAATAAACAATTCTATTCCTCTTTCTTCCGTCT
Found at i:108584681 original size:23 final size:23
Alignment explanation
Indices: 108584655--108584748 Score: 127
Period size: 23 Copynumber: 4.1 Consensus size: 23
108584645 AAGTTAGAAG
108584655 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
108584678 AGTGAAAAAACTTGAATATGAATA
1 AGTGAAGAGACTTGAATATGAA-A
*
108584702 A-TGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
108584724 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
108584747 AG
1 AG
108584749 ATACACACAT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
22 2 0.03
23 57 0.93
24 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.24, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:108587094 original size:79 final size:79
Alignment explanation
Indices: 108586974--108587131 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
108586964 CTCATCAACG
108586974 AAAAAAAGTAAGCTAACTTAAAAATAACAACACCTTTAGAAGTGTTATTTCATCGTGAATTCCGC
1 AAAAAAAGTAAGCTAACTTAAAAATAACAACACCTTTAGAAGTGTTATTTCATCGTGAATTCCGC
108587039 TATTCATCAGTGCT
66 TATTCATCAGTGCT
108587053 AAAAAAAGTAAGCTAACTTAAAAATAACAACACCTTTAGAAGTGTTATTTCATCGTGAATTCCGC
1 AAAAAAAGTAAGCTAACTTAAAAATAACAACACCTTTAGAAGTGTTATTTCATCGTGAATTCCGC
108587118 TATTCATCAGTGCT
66 TATTCATCAGTGCT
108587132 GGAATTGCTC
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (79 bp):
AAAAAAAGTAAGCTAACTTAAAAATAACAACACCTTTAGAAGTGTTATTTCATCGTGAATTCCGC
TATTCATCAGTGCT
Found at i:108595322 original size:20 final size:20
Alignment explanation
Indices: 108595281--108595318 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
108595271 GGTTTAAAAA
*
108595281 TTTTAAATAATTATTTTCAT
1 TTTTAAATAATTATTCTCAT
*
108595301 TTTTTAATAATT-TTCTCA
1 TTTTAAATAATTATTCTCA
108595319 ATTTGATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTAAATAATTATTCTCAT
Found at i:108595411 original size:27 final size:27
Alignment explanation
Indices: 108595381--108595456 Score: 66
Period size: 27 Copynumber: 2.7 Consensus size: 27
108595371 TTTAATAACA
*
108595381 ATTTTAATATTTTTAATAATTAAATAT
1 ATTTTAATATTTTTAATAATTAAAAAT
* *
108595408 ATTTTACA-A-TTTTATGTATTTAAAAAT
1 ATTTTA-ATATTTTTA-ATAATTAAAAAT
*
108595435 ATTTTTTATGATTTTTAATAAT
1 A-TTTTAAT-ATTTTTAATAAT
108595457 ATTTTCACAA
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
26 5 0.14
27 18 0.49
28 5 0.14
29 4 0.11
30 5 0.14
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (27 bp):
ATTTTAATATTTTTAATAATTAAAAAT
Found at i:108595442 original size:21 final size:22
Alignment explanation
Indices: 108595417--108595461 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
108595407 TATTTTACAA
108595417 TTTTATG-TATTTAAAAATATT
1 TTTTATGATATTTAAAAATATT
* *
108595438 TTTTATGATTTTTAATAATATT
1 TTTTATGATATTTAAAAATATT
108595460 TT
1 TT
108595462 CACAATTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (22 bp):
TTTTATGATATTTAAAAATATT
Found at i:108599705 original size:25 final size:25
Alignment explanation
Indices: 108599671--108599725 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
108599661 CATCAGCCCT
*
108599671 CAACGGTCAACAATAAATGCAAAAA
1 CAACAGTCAACAATAAATGCAAAAA
108599696 CAACAGTCAACAATAAATGCAAAAA
1 CAACAGTCAACAATAAATGCAAAAA
108599721 CAACA
1 CAACA
108599726 AAAACATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.58, C:0.22, G:0.09, T:0.11
Consensus pattern (25 bp):
CAACAGTCAACAATAAATGCAAAAA
Found at i:108601704 original size:23 final size:23
Alignment explanation
Indices: 108601677--108601752 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
108601667 TTTGTTCCAT
*
108601677 TAGTTTAGTATGTTTATTAAATA
1 TAGTTTAATATGTTTATTAAATA
* * **
108601700 TAGTTTTGATTTAT-TTTGTTCCAT-
1 TAG-TTT-A-ATATGTTTATTAAATA
108601724 TAGTTTAATATGTTTATTAAATA
1 TAGTTTAATATGTTTATTAAATA
108601747 TAGTTT
1 TAGTTT
108601753 TGAAGTTTGA
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
21 3 0.08
22 8 0.20
23 12 0.30
24 6 0.15
25 8 0.20
26 3 0.08
ACGTcount: A:0.29, C:0.03, G:0.12, T:0.57
Consensus pattern (23 bp):
TAGTTTAATATGTTTATTAAATA
Found at i:108601730 original size:47 final size:47
Alignment explanation
Indices: 108601661--108601755 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
108601651 AAGTATGTTT
*
108601661 ATTTATTTTGTTCCATTAGTTTAGTATGTTTATTAAATATAGTTTTG
1 ATTTATTTTGTTCCATTAGTTTAATATGTTTATTAAATATAGTTTTG
108601708 ATTTATTTTGTTCCATTAGTTTAATATGTTTATTAAATATAGTTTTG
1 ATTTATTTTGTTCCATTAGTTTAATATGTTTATTAAATATAGTTTTG
108601755 A
1 A
108601756 AGTTTGAGAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.27, C:0.04, G:0.12, T:0.57
Consensus pattern (47 bp):
ATTTATTTTGTTCCATTAGTTTAATATGTTTATTAAATATAGTTTTG
Found at i:108602833 original size:14 final size:14
Alignment explanation
Indices: 108602814--108602841 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
108602804 GATTTTACAT
108602814 ATGAATAATAAATC
1 ATGAATAATAAATC
108602828 ATGAATAATAAATC
1 ATGAATAATAAATC
108602842 GACCCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.29
Consensus pattern (14 bp):
ATGAATAATAAATC
Found at i:108613489 original size:5 final size:5
Alignment explanation
Indices: 108613459--108613488 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
108613449 GTTTTGGTAG
*
108613459 ATCTC ATCTC ATCTC ATCTC ATCTC TTCTC
1 ATCTC ATCTC ATCTC ATCTC ATCTC ATCTC
108613489 TGTATTAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (5 bp):
ATCTC
Found at i:108615070 original size:6 final size:6
Alignment explanation
Indices: 108615059--108615104 Score: 69
Period size: 6 Copynumber: 8.0 Consensus size: 6
108615049 AACGCCGTAT
*
108615059 CTTTTG CTTTTG CTTTTG CTTTTG CTTTTT CTTTT- CTTTT- CTTTTG
1 CTTTTG CTTTTG CTTTTG CTTTTG CTTTTG CTTTTG CTTTTG CTTTTG
108615105 ATAAAGCAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
5 10 0.26
6 28 0.74
ACGTcount: A:0.00, C:0.17, G:0.11, T:0.72
Consensus pattern (6 bp):
CTTTTG
Found at i:108624920 original size:15 final size:15
Alignment explanation
Indices: 108624895--108624929 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
108624885 GAACGTCTCC
*
108624895 ATTCTCTTCTCTTCT
1 ATTCACTTCTCTTCT
*
108624910 CTTCACTTCTCTTCT
1 ATTCACTTCTCTTCT
108624925 ATTCA
1 ATTCA
108624930 AGGAACACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.11, C:0.34, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTCACTTCTCTTCT
Found at i:108637308 original size:5 final size:5
Alignment explanation
Indices: 108637298--108637324 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
108637288 TATATATATA
108637298 ATAAT ATAAT ATAAT ATAAT ATAAT AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT AT
108637325 TCAATAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:108637331 original size:15 final size:14
Alignment explanation
Indices: 108637291--108637324 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
108637281 TTTCTTTTAT
108637291 ATATATAATAATATA
1 ATATA-AATAATATA
108637306 ATATAATATAATATA
1 ATATAA-ATAATATA
108637321 ATAT
1 ATAT
108637325 TCAATAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.06
15 17 0.94
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATAAATAATATA
Found at i:108639160 original size:35 final size:35
Alignment explanation
Indices: 108639110--108639176 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
108639100 AGTGCCACGA
**
108639110 TTCACAACTTAGTATGGTTAATACCATACCTATGT
1 TTCACAACTTAGTATGGGAAATACCATACCTATGT
*
108639145 TTCACAACTTGGTATGGGAAATACCATACCTA
1 TTCACAACTTAGTATGGGAAATACCATACCTA
108639177 CATATTATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (35 bp):
TTCACAACTTAGTATGGGAAATACCATACCTATGT
Found at i:108639204 original size:35 final size:34
Alignment explanation
Indices: 108639156--108639281 Score: 162
Period size: 35 Copynumber: 3.6 Consensus size: 34
108639146 TCACAACTTG
* *
108639156 GTATGGGAAATACCATACCTACATATTATAGCTCG
1 GTAT-GGAAATACCATACCTACATATCATAGCTCA
* *
108639191 GTTTGGAGGATACCATACCTACATATCATAGCTCA
1 GTATGGA-AATACCATACCTACATATCATAGCTCA
* * *
108639226 ATATGGAAATACCATACCTACGTATCATATCTCA
1 GTATGGAAATACCATACCTACATATCATAGCTCA
108639260 GTATGGATAATACCATACCTAC
1 GTATGGA-AATACCATACCTAC
108639282 GTGTCATAAC
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
34 33 0.42
35 46 0.58
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (34 bp):
GTATGGAAATACCATACCTACATATCATAGCTCA
Found at i:108639282 original size:35 final size:34
Alignment explanation
Indices: 108639120--108639289 Score: 160
Period size: 35 Copynumber: 4.9 Consensus size: 34
108639110 TTCACAACTT
* * * * * *
108639120 AGTATGGTTAATACCATACCTATGTTTCACAACTT
1 AGTATGG-AAATACCATACCTACGTATCATAGCTC
* * *
108639155 GGTATGGGAAATACCATACCTACATATTATAGCTC
1 AGTAT-GGAAATACCATACCTACGTATCATAGCTC
* * * *
108639190 GGTTTGGAGGATACCATACCTACATATCATAGCTC
1 AGTATGGA-AATACCATACCTACGTATCATAGCTC
* *
108639225 AATATGGAAATACCATACCTACGTATCATATCTC
1 AGTATGGAAATACCATACCTACGTATCATAGCTC
*
108639259 AGTATGGATAATACCATACCTACGTGTCATA
1 AGTATGGA-AATACCATACCTACGTATCATA
108639290 ACTTTTCCAT
Statistics
Matches: 112, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
34 33 0.29
35 77 0.69
36 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.31
Consensus pattern (34 bp):
AGTATGGAAATACCATACCTACGTATCATAGCTC
Found at i:108639289 original size:69 final size:70
Alignment explanation
Indices: 108639120--108639292 Score: 186
Period size: 69 Copynumber: 2.5 Consensus size: 70
108639110 TTCACAACTT
* * * * *** *
108639120 AGTATGGTTAATACCATACCTATGTTTCACAACTTGGTATGGGAAATACCATACCTACATATTAT
1 AGTATGGATAATACCATACCTACGTATCATAACTCAATATGGGAAATACCATACCTACATATCAT
108639185 AGCTC
66 AGCTC
* * ** * * *
108639190 GGTTTGGAGGATACCATACCTACATATCATAGCTCAATAT-GGAAATACCATACCTACGTATCAT
1 AGTATGGATAATACCATACCTACGTATCATAACTCAATATGGGAAATACCATACCTACATATCAT
*
108639254 ATCTC
66 AGCTC
*
108639259 AGTATGGATAATACCATACCTACGTGTCATAACT
1 AGTATGGATAATACCATACCTACGTATCATAACT
108639293 TTTCCATGGA
Statistics
Matches: 80, Mismatches: 23, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
69 53 0.66
70 27 0.34
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (70 bp):
AGTATGGATAATACCATACCTACGTATCATAACTCAATATGGGAAATACCATACCTACATATCAT
AGCTC
Found at i:108640990 original size:23 final size:24
Alignment explanation
Indices: 108640963--108641011 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
108640953 GTTCAATAAT
*
108640963 AAATTAT-ACATATTAAAATAAAA
1 AAATTATAAAATATTAAAATAAAA
108640986 AAATTATGAAAAATATTAAAATAAAA
1 AAATTAT--AAAATATTAAAATAAAA
108641012 TTTTAGTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
26 15 0.68
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AAATTATAAAATATTAAAATAAAA
Found at i:108647567 original size:48 final size:48
Alignment explanation
Indices: 108647511--108647607 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
108647501 TTTCAAGATG
108647511 TACATGACATCCTAATCTTATTAAGAGTTTAATTCTTGTTAAGAGACT
1 TACATGACATCCTAATCTTATTAAGAGTTTAATTCTTGTTAAGAGACT
*
108647559 TACATGACATGCTAATCTTATTAAGAGTTTAATTCTTGTTAAGAGACT
1 TACATGACATCCTAATCTTATTAAGAGTTTAATTCTTGTTAAGAGACT
108647607 T
1 T
108647608 GATGACCATA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (48 bp):
TACATGACATCCTAATCTTATTAAGAGTTTAATTCTTGTTAAGAGACT
Found at i:108650367 original size:19 final size:19
Alignment explanation
Indices: 108650343--108650381 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
108650333 TTTACTTATC
108650343 ATCCAAAGTTTAAGAAATT
1 ATCCAAAGTTTAAGAAATT
108650362 ATCCAAAGTTTAAGAAATT
1 ATCCAAAGTTTAAGAAATT
108650381 A
1 A
108650382 CAGTTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (19 bp):
ATCCAAAGTTTAAGAAATT
Found at i:108656318 original size:41 final size:41
Alignment explanation
Indices: 108656271--108656352 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
108656261 ATATAACACC
108656271 TATGTACATGCCACCTTTACCCAAAAGAAAAATATACATCA
1 TATGTACATGCCACCTTTACCCAAAAGAAAAATATACATCA
108656312 TATGTACATGCCACCTTTACCCAAAAGAAAAATATACATCA
1 TATGTACATGCCACCTTTACCCAAAAGAAAAATATACATCA
108656353 CCAAATTTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.24
Consensus pattern (41 bp):
TATGTACATGCCACCTTTACCCAAAAGAAAAATATACATCA
Found at i:108658482 original size:5 final size:5
Alignment explanation
Indices: 108658472--108658519 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
108658462 TTTATATATA
108658472 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
108658520 CTTAATTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:108659088 original size:22 final size:22
Alignment explanation
Indices: 108659060--108659103 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
108659050 TAACCCTTGC
108659060 AGGAATATTCTGTAAATATTTT
1 AGGAATATTCTGTAAATATTTT
* *
108659082 AGGAATATTTTGTAGATATTTT
1 AGGAATATTCTGTAAATATTTT
108659104 TTTTATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (22 bp):
AGGAATATTCTGTAAATATTTT
Found at i:108663684 original size:22 final size:22
Alignment explanation
Indices: 108663659--108663703 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
108663649 AGGGGGAGTG
108663659 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
108663681 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
108663703 T
1 T
108663704 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:108669529 original size:19 final size:20
Alignment explanation
Indices: 108669502--108669544 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
108669492 TCTTTTTGCA
* *
108669502 TTCATTCATTTGCATTACAT
1 TTCATTCATGTGCATTAAAT
108669522 TTCA-TCATGTGCATTAAAT
1 TTCATTCATGTGCATTAAAT
108669541 TTCA
1 TTCA
108669545 CGAAAAAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.47
Consensus pattern (20 bp):
TTCATTCATGTGCATTAAAT
Found at i:108673961 original size:22 final size:22
Alignment explanation
Indices: 108673933--108673975 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
108673923 AACTTGTTCT
108673933 AAAGATGAAAACCACAATACCC
1 AAAGATGAAAACCACAATACCC
108673955 AAAGATGAAAACCACAATACC
1 AAAGATGAAAACCACAATACC
108673976 A
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.56, C:0.26, G:0.09, T:0.09
Consensus pattern (22 bp):
AAAGATGAAAACCACAATACCC
Done.