Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 36 of 333
Found at i:10004781 original size:24 final size:22
Alignment explanation
Indices: 10004746--10004789 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 22
10004736 TCTAATATAG
10004746 ATATATATTGTA-TATATTTTAC
1 ATATATATTGTACT-TATTTTAC
10004768 ATATATATTATGTACTTATTTT
1 ATATATA-T-TGTACTTATTTT
10004790 TAATGTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 7 0.37
23 1 0.05
24 10 0.53
25 1 0.05
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.57
Consensus pattern (22 bp):
ATATATATTGTACTTATTTTAC
Found at i:10011119 original size:27 final size:27
Alignment explanation
Indices: 10011089--10011156 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
10011079 CGCGCTTCTG
*
10011089 AGATAGGCTCAACCAGTTGCGCCTGTC
1 AGATAGGCCCAACCAGTTGCGCCTGTC
10011116 AGATAGGCCCAACCAGTTGCGCCTGTC
1 AGATAGGCCCAACCAGTTGCGCCTGTC
* *
10011143 ACATAGGCGCAACC
1 AGATAGGCCCAACC
10011157 CGTTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (27 bp):
AGATAGGCCCAACCAGTTGCGCCTGTC
Found at i:10012462 original size:26 final size:26
Alignment explanation
Indices: 10012425--10012508 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
10012415 TGATACAAAT
*
10012425 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
10012451 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10012477 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10012503 TGATAA
1 TGATAA
10012509 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:10026099 original size:46 final size:46
Alignment explanation
Indices: 10026034--10026261 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
10026024 TTATCTTTGA
* * * *
10026034 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
*
10026080 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
10026126 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * * *
10026172 CACGCTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
10026218 CATGTTGCCACGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
10026262 TTCAGAGAGC
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 162 0.98
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:10030216 original size:18 final size:17
Alignment explanation
Indices: 10030181--10030213 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10030171 CTTTTTATTC
10030181 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
10030198 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
10030214 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:10035994 original size:12 final size:12
Alignment explanation
Indices: 10035973--10036001 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
10035963 GAGTATTCCA
10035973 TTTT-TTTTATT
1 TTTTATTTTATT
10035984 TTTTATTTTATT
1 TTTTATTTTATT
10035996 TTTTAT
1 TTTTAT
10036002 AAAAATTTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:10037912 original size:18 final size:17
Alignment explanation
Indices: 10037877--10037909 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10037867 CTTTTTATTC
10037877 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
10037894 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
10037910 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:10039026 original size:11 final size:11
Alignment explanation
Indices: 10039010--10039074 Score: 55
Period size: 11 Copynumber: 6.1 Consensus size: 11
10039000 ATATATACTA
10039010 AATAAAATAAT
1 AATAAAATAAT
10039021 AATAAAATAAT
1 AATAAAATAAT
*
10039032 AA-AATATAATT
1 AATAAAATAA-T
*
10039043 AA-AAATTAA-
1 AATAAAATAAT
* *
10039052 ATTAAAATATT
1 AATAAAATAAT
*
10039063 AATAAACTAAT
1 AATAAAATAAT
10039074 A
1 A
10039075 TTTATTTATT
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
9 1 0.02
10 11 0.26
11 30 0.71
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:10040348 original size:21 final size:21
Alignment explanation
Indices: 10040306--10040348 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10040296 TTTGAGACCT
**
10040306 TAACATGATAGTGCTTGGAAC
1 TAACATGATAGTGCTTACAAC
* *
10040327 TAACATGATGGTGTTTACAAC
1 TAACATGATAGTGCTTACAAC
10040348 T
1 T
10040349 CTCGTTGATG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.33
Consensus pattern (21 bp):
TAACATGATAGTGCTTACAAC
Found at i:10047811 original size:28 final size:28
Alignment explanation
Indices: 10047780--10047834 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
10047770 AGTTGTAGGG
**
10047780 TTAATTTTTCTACTTTTTCTTGTTCTTT
1 TTAATTTTTCTACGATTTCTTGTTCTTT
10047808 TTAATTTTTCTACGATTTCTTGTTCTT
1 TTAATTTTTCTACGATTTCTTGTTCTT
10047835 GTCATTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.13, C:0.15, G:0.05, T:0.67
Consensus pattern (28 bp):
TTAATTTTTCTACGATTTCTTGTTCTTT
Found at i:10060125 original size:28 final size:28
Alignment explanation
Indices: 10060064--10060129 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 28
10060054 AATCCTGATC
*
10060064 CTAAAAAAATTCATAAAAATTCAAAATTT
1 CTAAAAAAATT-ATAAAAATTCAAAATTA
10060093 C-AAAAAAACTT-TAAAAATAT-AAAATTA
1 CTAAAAAAA-TTATAAAAAT-TCAAAATTA
10060120 CTAAAAAAAT
1 CTAAAAAAAT
10060130 CATTTTTTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
27 15 0.45
28 15 0.45
29 3 0.09
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (28 bp):
CTAAAAAAATTATAAAAATTCAAAATTA
Found at i:10061026 original size:9 final size:9
Alignment explanation
Indices: 10061012--10061051 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
10061002 GTGCTATTAA
10061012 AAAATTATT
1 AAAATTATT
10061021 AAAATTATT
1 AAAATTATT
* *
10061030 AAAATGATA
1 AAAATTATT
*
10061039 AAAAATATT
1 AAAATTATT
10061048 AAAA
1 AAAA
10061052 AAACTAATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (9 bp):
AAAATTATT
Found at i:10063269 original size:44 final size:45
Alignment explanation
Indices: 10063209--10063293 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 45
10063199 TAGGATCTGA
* *
10063209 TATGTATTTTCGTGTAAGACCACATCTAGGACATTGGCATCAACT
1 TATGTATTTACGTGTAAGACCACATCTAGGACATCGGCATCAACT
**
10063254 TATG-ATTTACGTGTAAGACCATGTCTAGGACATCGGCATC
1 TATGTATTTACGTGTAAGACCACATCTAGGACATCGGCATC
10063294 GTATTTGGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 32 0.89
45 4 0.11
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (45 bp):
TATGTATTTACGTGTAAGACCACATCTAGGACATCGGCATCAACT
Found at i:10063368 original size:43 final size:42
Alignment explanation
Indices: 10063219--10063369 Score: 110
Period size: 44 Copynumber: 3.5 Consensus size: 42
10063209 TATGTATTTT
* * * * *
10063219 CGTGTAAGACCACATCTAGGACATTGGCATC-AACTTATGATTTA
1 CGTGTAAGACCACGTATGGGACATCGGCATCGTA-TT-TGA-TTA
* * * * *
10063263 CGTGTAAGACCATGTCTAGGACATCGGCATCGTATTTGGTTT
1 CGTGTAAGACCACGTATGGGACATCGGCATCGTATTTGATTA
*
10063305 CGTGTAAAACC-CTGTATGGGACGAT-GGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTATGGGAC-ATCGGCATCG-TATTTGATTA
* *
10063348 CATGTAAGACCACGTTTGGGAC
1 CGTGTAAGACCACGTATGGGAC
10063370 TTTGGCATTG
Statistics
Matches: 87, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
42 26 0.30
43 29 0.33
44 31 0.36
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCACGTATGGGACATCGGCATCGTATTTGATTA
Found at i:10074381 original size:43 final size:43
Alignment explanation
Indices: 10074226--10074382 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
10074216 TGTGTTTTCG
* * **
10074226 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTATG
1 TGTAAGACCACGTATGGGACGTTGGCATCGA-TATTTGA-TTACA
* * * ** *
10074270 TGTAAGACCATGTCTGGGACATCAGCATCG-TATTTGATTTCA
1 TGTAAGACCACGTATGGGACGTTGGCATCGATATTTGATTACA
* *
10074312 TGTAAGACC-CTGTATGAGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTATGGGA-CGTTGGCATCGATATTTGATTACA
10074355 TGTAAGACCACGTATGGGACGTTGGCAT
1 TGTAAGACCACGTATGGGACGTTGGCAT
10074383 TGTACGAGTT
Statistics
Matches: 89, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
42 25 0.28
43 37 0.42
44 27 0.30
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTATGGGACGTTGGCATCGATATTTGATTACA
Found at i:10077758 original size:42 final size:42
Alignment explanation
Indices: 10077695--10077803 Score: 173
Period size: 42 Copynumber: 2.6 Consensus size: 42
10077685 CTTCATATGG
* *
10077695 ACTTCATATAGACTTACTAAGCATATGGGTAATTGCTAATTA
1 ACTTCATATGGACTTACTAAGCATATGGGTAATTACTAATTA
* * *
10077737 ACTTCATATGGACTTAATAAGCATGTGGGTAATTACTTATTA
1 ACTTCATATGGACTTACTAAGCATATGGGTAATTACTAATTA
10077779 ACTTCATATGGACTTACTAAGCATA
1 ACTTCATATGGACTTACTAAGCATA
10077804 AAGCTTACCC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (42 bp):
ACTTCATATGGACTTACTAAGCATATGGGTAATTACTAATTA
Found at i:10080664 original size:22 final size:23
Alignment explanation
Indices: 10080625--10080668 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
10080615 ATAAGTATTT
10080625 CTTATTCACATTTTTAAATAAAG
1 CTTATTCACATTTTTAAATAAAG
10080648 CTTATTCACA-TTTTAAATAAA
1 CTTATTCACATTTTTAAATAAA
10080669 AAATTTGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (23 bp):
CTTATTCACATTTTTAAATAAAG
Found at i:10080929 original size:45 final size:44
Alignment explanation
Indices: 10080854--10080953 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 44
10080844 ATATCAGAAT
*
10080854 TTAAAGATTCAAACATTTATGGATGAATTTAATGGAGGGAAGAC
1 TTAAAGATTCAAACATTCATGGATGAATTTAATGGAGGGAAGAC
* * **
10080898 TTAAGGATTCAAGCATTCATTGGAT-AGATTTAATGGAGGGAATTC
1 TTAAAGATTCAAACATTCA-TGGATGA-ATTTAATGGAGGGAAGAC
*
10080943 TAAAAGATTCA
1 TTAAAGATTCA
10080954 CATCCATCAT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
44 17 0.36
45 30 0.64
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (44 bp):
TTAAAGATTCAAACATTCATGGATGAATTTAATGGAGGGAAGAC
Found at i:10091834 original size:40 final size:40
Alignment explanation
Indices: 10091777--10091872 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
10091767 ATGACAAAGA
10091777 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
10091818 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
10091858 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
10091873 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:10092295 original size:29 final size:30
Alignment explanation
Indices: 10092236--10092293 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
10092226 TCCGAGCCTT
* *
10092236 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATATAATTATGAAAAAGTTTA
* *
10092266 GGGGCAAAATTATAATTTTGAAAAAGTT
1 GGGGCAAAAATATAATTATGAAAAAGTT
10092294 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATATAATTATGAAAAAGTTTA
Found at i:10092721 original size:44 final size:45
Alignment explanation
Indices: 10092626--10092759 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
10092616 ACAGGACAGA
* *
10092626 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
10092672 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
10092716 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
10092760 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:10094699 original size:12 final size:12
Alignment explanation
Indices: 10094682--10094706 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10094672 CATGTTATGT
10094682 GTATATATATAA
1 GTATATATATAA
10094694 GTATATATATAA
1 GTATATATATAA
10094706 G
1 G
10094707 AGTCAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (12 bp):
GTATATATATAA
Found at i:10095152 original size:13 final size:13
Alignment explanation
Indices: 10095134--10095161 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10095124 TGATCTCTTC
10095134 TGGGTATTCTATA
1 TGGGTATTCTATA
10095147 TGGGTATTCTATA
1 TGGGTATTCTATA
10095160 TG
1 TG
10095162 CTCTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
TGGGTATTCTATA
Found at i:10097123 original size:8 final size:8
Alignment explanation
Indices: 10097110--10097141 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
10097100 TTATGTTTTA
10097110 TATTATAT
1 TATTATAT
10097118 TATTATAT
1 TATTATAT
10097126 TATTATAT
1 TATTATAT
10097134 TATTATAT
1 TATTATAT
10097142 ATATGACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATTATAT
Found at i:10097211 original size:40 final size:40
Alignment explanation
Indices: 10097154--10097249 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
10097144 ATGACAAAGA
10097154 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
10097195 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
10097235 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
10097250 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:10098097 original size:44 final size:45
Alignment explanation
Indices: 10098002--10098135 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
10097992 ACAGGACAGA
* *
10098002 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
10098048 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
10098092 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
10098136 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:10101355 original size:42 final size:43
Alignment explanation
Indices: 10101296--10101379 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 43
10101286 TTTTTGTTGC
*
10101296 CATTTGTTTTTGCATACTTTCTCTA-ATGGCCAAACTGCTTGA
1 CATTTATTTTTGCATACTTTCTCTACATGGCCAAACTGCTTGA
10101338 CATTTATTTTTGCATACTTTCTCTACATGGCCAAACTGCTTG
1 CATTTATTTTTGCATACTTTCTCTACATGGCCAAACTGCTTG
10101380 CAATTTTTGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 24 0.60
43 16 0.40
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (43 bp):
CATTTATTTTTGCATACTTTCTCTACATGGCCAAACTGCTTGA
Found at i:10101711 original size:75 final size:75
Alignment explanation
Indices: 10101586--10101741 Score: 294
Period size: 75 Copynumber: 2.1 Consensus size: 75
10101576 AACATGTTTT
* *
10101586 TCTTCTCTATTTGCCCTTCTTTGTTCTAGAGTATTGATTGGCTATGAGAGTGAAATGGTTGATAG
1 TCTTCTCTATTTGCCCTTCTTTGTTCTAGAGTATTGATTAGCTATAAGAGTGAAATGGTTGATAG
10101651 ATCCCTTAAG
66 ATCCCTTAAG
10101661 TCTTCTCTATTTGCCCTTCTTTGTTCTAGAGTATTGATTAGCTATAAGAGTGAAATGGTTGATAG
1 TCTTCTCTATTTGCCCTTCTTTGTTCTAGAGTATTGATTAGCTATAAGAGTGAAATGGTTGATAG
10101726 ATCCCTTAAG
66 ATCCCTTAAG
10101736 TCTTCT
1 TCTTCT
10101742 AGTGAGGATA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
75 79 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (75 bp):
TCTTCTCTATTTGCCCTTCTTTGTTCTAGAGTATTGATTAGCTATAAGAGTGAAATGGTTGATAG
ATCCCTTAAG
Found at i:10103112 original size:21 final size:21
Alignment explanation
Indices: 10103074--10103113 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10103064 TTTGTCAAGC
*
10103074 TACTCGAATCAAATATTAAGA
1 TACTCGAATCAAAGATTAAGA
* *
10103095 TACTCGAATTACAGATTAA
1 TACTCGAATCAAAGATTAA
10103114 AATAGAAAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (21 bp):
TACTCGAATCAAAGATTAAGA
Found at i:10104675 original size:246 final size:247
Alignment explanation
Indices: 10104240--10104976 Score: 901
Period size: 261 Copynumber: 2.9 Consensus size: 247
10104230 CAGTGTCATG
* * * * * *
10104240 GTTGATAGATGTACCCTTTGTAGCGGTATTAACACCTAGGATGCCATCAATGGCTTTGAGA-TAT
1 GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAATGGCCTTGAGATTAT
** * * *
10104304 CTTCCCCTGATGGTG-ATGCATCCATGATACCTTGTTGACGAGACATATTTTGTATTTGTTCACC
66 CTTCCATTGATTGTGAATG--TCCATGATACCTTCTTGACGAGACATATTTTGTATCTGTTCACC
* * * * * *
10104368 ATTTTTTATGCTACTCAAGCTCTTAGCTTCTCCTGCTGAAGTTGATAAGCTAGCGTTGGCTTCAG
129 ATTTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAG
* ** * *
10104433 CTTCAGCTAAAATTTTGGACTTGTGTTCAGAATCTTCTGGTTTTGATGC-TTT-
194 CTTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTCTGGCTTTGATGCTTTTA
*
10104485 GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAAGGGCCTTGAGATTAT
1 GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAATGGCCTTGAGATTAT
* *
10104550 CTTCCATTGATTGTGACATGTCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTGACCA
66 CTTCCATTGATTGTGA-ATGTCCATGATACCTTCTTGACGAGACATATTTTGTATCTGTTCACCA
* * * * * *
10104615 ATTCTAATGTTATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAAC
130 TTTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAGC
*
10104680 TTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTTTGGCTTTGATGCTTTTGCA
195 TTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTCTGGCTTTGATGCTTTT--A
*
10104735 GCAAATTCATGGTCGATAGATGTACCCTTTGTAGCATTATCAACATCTGGGATGCTATCAATGGC
1 G--------T--T-GATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAATGGC
* * *
10104800 CATGCA-ATTATCTTCCATTGATTGTG-ATGTGCCCATGATACCTTCTTGTCGATACATATTTTG
55 CTTG-AGATTATCTTCCATTGATTGTGAATGT--CCATGATACCTTCTTGACGAGACATATTTTG
*
10104863 TATCTGTTCACCATTTTTTATGTAATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAG
117 TATCTGTTCACCATTTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAG
* * *
10104928 CATTGGCTTCGGCTTTGGCTAATCTTTTGGATTTATGTTCAGAATCTTC
182 CATTGGCTTCAGCTTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTC
10104977 AATAGATCCT
Statistics
Matches: 421, Mismatches: 50, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
245 54 0.13
246 151 0.36
247 3 0.01
248 3 0.01
250 1 0.00
258 1 0.00
259 4 0.01
260 1 0.00
261 202 0.48
262 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (247 bp):
GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAATGGCCTTGAGATTAT
CTTCCATTGATTGTGAATGTCCATGATACCTTCTTGACGAGACATATTTTGTATCTGTTCACCAT
TTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAGCT
TCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTCTGGCTTTGATGCTTTTA
Found at i:10114651 original size:2 final size:2
Alignment explanation
Indices: 10114644--10114767 Score: 124
Period size: 2 Copynumber: 62.5 Consensus size: 2
10114634 TGAACACCCA
10114644 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
* * * * * *
10114686 AC AC AC AC AC AC AC AC -C AC GC AC GC AC GC AC GC AC GC AC GC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
* * * * * * *
10114727 AC GC AC GC GC GC GC GC GC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
10114768 TATATATATA
Statistics
Matches: 105, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
1 1 0.01
2 104 0.99
ACGTcount: A:0.40, C:0.50, G:0.10, T:0.00
Consensus pattern (2 bp):
AC
Found at i:10116722 original size:32 final size:33
Alignment explanation
Indices: 10116670--10116735 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
10116660 AGACAAGTTG
*
10116670 AAGAAGAAAGAAAAAAATGGTTTGTCTTGTTTT
1 AAGAAGAAAGAAAAAAATGGTTTGTCTTATTTT
*
10116703 AAGAAGAAAG-AAAAAATGGTTTGTGTTATTTT
1 AAGAAGAAAGAAAAAAATGGTTTGTCTTATTTT
10116735 A
1 A
10116736 TTTTACTACG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 21 0.68
33 10 0.32
ACGTcount: A:0.44, C:0.02, G:0.21, T:0.33
Consensus pattern (33 bp):
AAGAAGAAAGAAAAAAATGGTTTGTCTTATTTT
Found at i:10120456 original size:26 final size:26
Alignment explanation
Indices: 10120378--10120507 Score: 167
Period size: 26 Copynumber: 5.1 Consensus size: 26
10120368 GCCTAGCCTC
10120378 TTTCAAT-AACTGGGGCA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
*** *
10120402 TTTTGGTAAATTGGGGCA-AAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
*
10120427 TTTCAATAAACTGGGGCATAAGCCAT
1 TTTCAATAAACTGGGGCATAAGCCCT
**
10120453 TTTCGGTAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
*
10120479 TTTCAATAAACTAGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCT
10120505 TTT
1 TTT
10120508 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
24 4 0.04
25 30 0.34
26 55 0.62
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
TTTCAATAAACTGGGGCATAAGCCCT
Found at i:10120489 original size:52 final size:51
Alignment explanation
Indices: 10120378--10120507 Score: 201
Period size: 52 Copynumber: 2.6 Consensus size: 51
10120368 GCCTAGCCTC
* *
10120378 TTTCAAT-AACTGGGGCA-AAGCCCTTTTTGGTAAATTGGGGCAAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCT
*
10120427 TTTCAATAAACTGGGGCATAAGCCATTTTCGGTAAACTGGGGCATAAGCCCT
1 TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCT
*
10120479 TTTCAATAAACTAGGGCATAAGCCCTTTT
1 TTTCAATAAACTGGGGCATAAGCCCTTTT
10120508 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
49 7 0.10
50 10 0.14
51 22 0.30
52 34 0.47
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (51 bp):
TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCT
Found at i:10120582 original size:20 final size:20
Alignment explanation
Indices: 10120557--10120631 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
10120547 TTATGAATTC
*
10120557 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
10120577 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
10120597 GTCATGTACATATCATATCA-
1 ATCATGTGCATATCATA-CAT
10120617 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
10120632 TCCCACGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
18 8 0.16
20 40 0.80
21 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:10120606 original size:11 final size:11
Alignment explanation
Indices: 10120572--10120624 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
10120562 GTGCATTTCA
10120572 TACATATCATG
1 TACATATCATG
*
10120583 TGCATATCA--
1 TACATATCATG
*
10120592 TACATGTCATG
1 TACATATCATG
*
10120603 TACATATCATA
1 TACATATCATG
10120614 T-CA-ATCATG
1 TACATATCATG
10120623 TA
1 TA
10120625 TATCATATCC
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
9 13 0.39
10 2 0.06
11 18 0.55
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (11 bp):
TACATATCATG
Found at i:10120687 original size:25 final size:25
Alignment explanation
Indices: 10120659--10120706 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
10120649 ATAATTAAAC
* * *
10120659 CCTAGAGGTATAATAGTCATTTTTA
1 CCTAGAGGCAAAACAGTCATTTTTA
*
10120684 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGAGGCAAAACAGTCATTTT
10120707 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (25 bp):
CCTAGAGGCAAAACAGTCATTTTTA
Found at i:10127540 original size:18 final size:18
Alignment explanation
Indices: 10127514--10127548 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10127504 TCGTAACATT
*
10127514 GTGTTGTTTGGAAAACAA
1 GTGTCGTTTGGAAAACAA
*
10127532 GTGTCGTTTTGAAAACA
1 GTGTCGTTTGGAAAACA
10127549 CGTCCTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
GTGTCGTTTGGAAAACAA
Found at i:10128189 original size:25 final size:26
Alignment explanation
Indices: 10128161--10128257 Score: 135
Period size: 25 Copynumber: 3.8 Consensus size: 26
10128151 CTCTTTCAAT
10128161 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
10128186 AACTGGGGCA-AATCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* *
10128211 AACTGGGGTATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
10128237 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
10128258 GCACTTCCTC
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
25 31 0.51
26 30 0.49
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:10128236 original size:51 final size:50
Alignment explanation
Indices: 10128154--10128257 Score: 156
Period size: 51 Copynumber: 2.1 Consensus size: 50
10128144 GCCTAGCCTC
* *
10128154 TTTCAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCA-AATCCCT
1 TTTCAATAACTGGGGCAAAGCCATTTTCGGTAAACTGGGGCATAAGCCCT
*
10128203 TTTCAATAAACTGGGGTATAAGCCATTTTCGGTAAACTGGGGCATAAGCCCT
1 TTTCAAT-AACTGGGGCA-AAGCCATTTTCGGTAAACTGGGGCATAAGCCCT
10128255 TTT
1 TTT
10128258 GCACTTCCTC
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
49 7 0.14
50 9 0.18
51 24 0.49
52 9 0.18
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (50 bp):
TTTCAATAACTGGGGCAAAGCCATTTTCGGTAAACTGGGGCATAAGCCCT
Found at i:10128332 original size:20 final size:20
Alignment explanation
Indices: 10128307--10128381 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
10128297 TTATGAATTC
* *
10128307 ATCATGTGCATTTCATACAT
1 ATCATGTGTATATCATACAT
10128327 ATCATGTGTATATCATACAT
1 ATCATGTGTATATCATACAT
*
10128347 GTCATGTGTATATCATATCA-
1 ATCATGTGTATATCATA-CAT
10128367 ATCA--TGTATATCATA
1 ATCATGTGTATATCATA
10128382 TCCCACGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
18 11 0.22
20 37 0.74
21 2 0.04
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (20 bp):
ATCATGTGTATATCATACAT
Found at i:10128437 original size:25 final size:25
Alignment explanation
Indices: 10128409--10128456 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
10128399 ATAATTAAAC
* *
10128409 CCTAGGGGTATAATAGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
10128434 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
10128457 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:10148186 original size:21 final size:20
Alignment explanation
Indices: 10148162--10148208 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
10148152 AAAAAATTAG
10148162 TAAAATCT-TTCGTAAAAAAAA
1 TAAAATCTCTTC--AAAAAAAA
* *
10148183 TAAAACCTCTTCAAAATAAA
1 TAAAATCTCTTCAAAAAAAA
10148203 TAAAAT
1 TAAAAT
10148209 TTTTTTCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 12 0.55
21 7 0.32
22 3 0.14
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (20 bp):
TAAAATCTCTTCAAAAAAAA
Found at i:10154805 original size:15 final size:15
Alignment explanation
Indices: 10154773--10154818 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
10154763 ATTTATCTAT
10154773 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
10154790 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
10154805 TTATATTTTTATTT
1 TTATATTTCTATTT
10154819 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:10154884 original size:41 final size:40
Alignment explanation
Indices: 10154839--10154937 Score: 94
Period size: 41 Copynumber: 2.4 Consensus size: 40
10154829 ACTAATATTA
*
10154839 TTATTATTAT-TATTTTTCTTATATATGTTTTTTTAC-TTTT
1 TTATTATTATCTATTTTT-TTATATAT-TTATTTTACATTTT
** * *
10154879 GTTATTAACATTCTATTTATTTATTTATTTATTTTACATTTT
1 -TTATTATTA-TCTATTTTTTTATATATTTATTTTACATTTT
*
10154921 TTATTATTATGTATTTT
1 TTATTATTATCTATTTT
10154938 AACTTTTTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
40 6 0.13
41 22 0.48
42 12 0.26
43 6 0.13
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (40 bp):
TTATTATTATCTATTTTTTTATATATTTATTTTACATTTT
Found at i:10154935 original size:24 final size:24
Alignment explanation
Indices: 10154894--10154947 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
10154884 TAACATTCTA
* *
10154894 TTTATTTATTTATTTATTTTACATTT
1 TTTA-TTATTTATGTATTTTA-ACTT
10154920 TTTATTA-TTATGTATTTTAACTT
1 TTTATTATTTATGTATTTTAACTT
10154943 TTTAT
1 TTTAT
10154948 ATAACGCTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 8 0.31
24 11 0.42
25 3 0.12
26 4 0.15
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (24 bp):
TTTATTATTTATGTATTTTAACTT
Found at i:10155018 original size:25 final size:23
Alignment explanation
Indices: 10154918--10155019 Score: 77
Period size: 25 Copynumber: 4.2 Consensus size: 23
10154908 TATTTTACAT
*
10154918 TTTTTAT-TATTATGTATTTTAAC
1 TTTTTATATATTATGTA-TTTAAA
*
10154941 TTTTTATATA--ACGCTCATTTCAAA
1 TTTTTATATATTATG-T-ATTT-AAA
10154965 TTTTTATATATTACT-TACTTTAATA
1 TTTTTATATATTA-TGTA-TTTAA-A
10154990 TTTTTATATATTATGTATTTCAAA
1 TTTTTATATATTATGTATTT-AAA
10155014 CTTTTT
1 -TTTTT
10155020 TTTACACATT
Statistics
Matches: 64, Mismatches: 3, Indels: 22
0.72 0.03 0.25
Matches are distributed among these distances:
22 2 0.03
23 11 0.17
24 23 0.36
25 27 0.42
26 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.59
Consensus pattern (23 bp):
TTTTTATATATTATGTATTTAAA
Found at i:10161826 original size:132 final size:131
Alignment explanation
Indices: 10161588--10161892 Score: 344
Period size: 132 Copynumber: 2.3 Consensus size: 131
10161578 AAAAATCTCG
* * * * * * * ** *
10161588 ACTAGCCTTATCTCTCTAAGTAGTAGGGATCAGGCTGAAGATTGTAGATCTTATCTCCCTAAGCA
1 ACTAGCATTATCCCTCTAAGCAGTAGGGAACAAGCTAAAAATTACAGATCTTATCTCCCTAAACA
* * * * * * *
10161653 GTAAGGGAACAGATCGAAGACGGTGAATCTTATCTCCATGTAGCGACAAGGGAGCAGATTTAAGC
66 ATAAGAGAACAGATCAAAGACGATGAATCGTATCTCAATGTAGCGACAAGGGAGCAGATTTAAAC
10161718 C
131 C
* **
10161719 ACTAGTATTATCTCC-CTAAGCAGTAGTGGAACGGGCTAAAAATTACAGATCTTATCTCCCTAAA
1 ACTAGCATTATC-CCTCTAAGCAGTAG-GGAACAAGCTAAAAATTACAGATCTTATCTCCCTAAA
* * * *
10161783 CAAT-AGTAGAGCAGATCAAAGACGATGAATCGTATCTCAATGTAGTGGCAATGGAGCAGATTTA
64 CAATAAG-AGAACAGATCAAAGACGATGAATCGTATCTCAATGTAGCGACAAGGGAGCAGATTTA
10161847 AACC
128 AACC
*
10161851 ACTAGCCTTATCCCTCTAAGCAGTAGGGAACAAGCTAAAAAT
1 ACTAGCATTATCCCTCTAAGCAGTAGGGAACAAGCTAAAAAT
10161893 GACATACCAC
Statistics
Matches: 144, Mismatches: 26, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
131 38 0.26
132 106 0.74
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (131 bp):
ACTAGCATTATCCCTCTAAGCAGTAGGGAACAAGCTAAAAATTACAGATCTTATCTCCCTAAACA
ATAAGAGAACAGATCAAAGACGATGAATCGTATCTCAATGTAGCGACAAGGGAGCAGATTTAAAC
C
Found at i:10162034 original size:88 final size:88
Alignment explanation
Indices: 10161854--10162428 Score: 602
Period size: 88 Copynumber: 6.5 Consensus size: 88
10161844 TTAAACCACT
* * * * * * * *
10161854 AGCCTTATCCCTCTAAGCAGTAGGG-AACAAGCTAAAAATGACATACCACCCTATCTCCCTAAAC
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTAC--A-GATCTTATCTCCCTAAGC
* * * *
10161918 AGTAATGGTGTAGGTTGAAGACGGTG
63 AGTAATGGAGCAGATCGAAGACGGTG
* * *
10161944 AGCCTCATCCCCATAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAAT
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGT
* *
10162009 AGTGGAGCAGGTCGAAGACGGTG
66 AATGGAGCAGATCGAAGACGGTG
* * * * * *
10162032 AGCCTTATCCCCTTAAGCAACT-GGAAAACAGGCTGAAAATAACAGACCACCCTATCTCCCTAAG
1 AGCCTTATCCCCCTAAGC-AGTAGGGAAACAGGCTGAAAATTACAG---ATCTTATCTCCCTAAG
* * *
10162096 CAGTAATGGAGTAGGTTGAAGACGGTG
62 CAGTAATGGAGCAGATCGAAGACGGTG
* * * * *
10162123 AGCCTTGTCCCCCTAAACAGTAGGGAAATAGGCTGAAAATTGCAGATCTTATCTCCCTAAGTAGT
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGT
*
10162188 AGTGGAGCAGATCGAAGACGGTG
66 AATGGAGCAGATCGAAGACGGTG
* * * * *
10162211 AGCCTTATCCCCCTAAGTAGTAGGGAAACATGTTGGAAGTTACAGATCTTATCTCCCTAAGCAGT
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGT
*
10162276 AGTGGAGCAGATCGAAGACGGTG
66 AATGGAGCAGATCGAAGACGGTG
* * *
10162299 AGCCTTAT-CCCTTAAGCAGTAGGG-AACAGACT-AGAAATTACAGATCTTATCTCCCTAAGTAG
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAGGCTGA-AAATTACAGATCTTATCTCCCTAAGCAG
*
10162361 TAATGGAGCAGATCGAAGACAGTG
65 TAATGGAGCAGATCGAAGACGGTG
* * * * * * *
10162385 AACCTTAACCACCTAAACAGTAAGGCAACAGGCTGAAGATTACA
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACA
10162429 AATCATAAGC
Statistics
Matches: 406, Mismatches: 69, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
86 59 0.15
87 26 0.06
88 208 0.51
89 4 0.01
90 24 0.06
91 85 0.21
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (88 bp):
AGCCTTATCCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGT
AATGGAGCAGATCGAAGACGGTG
Found at i:10162205 original size:179 final size:179
Alignment explanation
Indices: 10161854--10162400 Score: 651
Period size: 179 Copynumber: 3.1 Consensus size: 179
10161844 TTAAACCACT
* * * * * * * *
10161854 AGCCTTATCCCTCTAAGCAGTAGG-GAACAAGCTAAAAATGACATACCACCCTATCTCCCTAAAC
1 AGCCTTATCCCCCTAAGAACTAGGAAAACAAGCTGAAAATAACAGACCACCCTATCTCCCTAAGC
* *
10161918 AGTAATGGTGTAGGTTGAAGACGGTGAGCCTCATCCCCATAAGCAGTAGGGAAACAGGCTGAAAA
66 AGTAATGGAGTAGGTTGAAGACGGTGAGCCTTATCCCCATAAGCAGTAGGGAAACAGGCTGAAAA
* * *
10161983 TTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGTG
131 TTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTG
* *
10162032 AGCCTTATCCCCTTAAGCAACT-GGAAAACAGGCTGAAAATAACAGACCACCCTATCTCCCTAAG
1 AGCCTTATCCCCCTAAG-AACTAGGAAAACAAGCTGAAAATAACAGACCACCCTATCTCCCTAAG
* * * *
10162096 CAGTAATGGAGTAGGTTGAAGACGGTGAGCCTTGTCCCCCTAAACAGTAGGGAAATAGGCTGAAA
65 CAGTAATGGAGTAGGTTGAAGACGGTGAGCCTTATCCCCATAAGCAGTAGGGAAACAGGCTGAAA
*
10162161 ATTGCAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTG
130 ATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTG
* * * * * * * * * *
10162211 AGCCTTATCCCCCTAAGTAGTAGGGAAACATGTTGGAAGTTACAG---ATCTTATCTCCCTAAGC
1 AGCCTTATCCCCCTAAGAACTAGGAAAACAAGCTGAAAATAACAGACCACCCTATCTCCCTAAGC
* * * * * *
10162273 AGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAT-CCCTTAAGCAGTAGGG-AACAGACT-AGAA
66 AGTAATGGAGTAGGTTGAAGACGGTGAGCCTTATCCCCATAAGCAGTAGGGAAACAGGCTGA-AA
* *
10162335 ATTACAGATCTTATCTCCCTAAGTAGTAATGGAGCAGATCGAAGACAGTG
130 ATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTG
* * *
10162385 AACCTTAACCACCTAA
1 AGCCTTATCCCCCTAA
10162401 ACAGTAAGGC
Statistics
Matches: 319, Mismatches: 46, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
173 1 0.00
174 68 0.21
175 14 0.04
176 44 0.14
178 19 0.06
179 173 0.54
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (179 bp):
AGCCTTATCCCCCTAAGAACTAGGAAAACAAGCTGAAAATAACAGACCACCCTATCTCCCTAAGC
AGTAATGGAGTAGGTTGAAGACGGTGAGCCTTATCCCCATAAGCAGTAGGGAAACAGGCTGAAAA
TTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTG
Found at i:10162218 original size:44 final size:43
Alignment explanation
Indices: 10162170--10162391 Score: 161
Period size: 44 Copynumber: 5.1 Consensus size: 43
10162160 AATTGCAGAT
10162170 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTGAGC
1 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGAC-GTGAGC
* * * * * *
10162214 CTTATCCCCCTAAGTAGTAG-GGAAACATGTTGGAAGTTAC-AGA-T
1 CTTATCTCCCTAAGTAGTAGTGG-AGCA-GATCGAAG--ACGTGAGC
*
10162258 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
1 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGAC-GTGAGC
* * * * * * *
10162302 CTTATC-CCTTAAGCAGTAG-GGAACAGACTAGAA-A-TTACAGAT
1 CTTATCTCCCTAAGTAGTAGTGGAGCAGA-TCGAAGACGT-GAG-C
* *
10162344 CTTATCTCCCTAAGTAGTAATGGAGCAGATCGAAGACAGTGAAC
1 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGAC-GTGAGC
10162388 CTTA
1 CTTA
10162392 ACCACCTAAA
Statistics
Matches: 134, Mismatches: 28, Indels: 32
0.69 0.14 0.16
Matches are distributed among these distances:
40 1 0.01
41 4 0.03
42 14 0.10
43 40 0.30
44 61 0.46
45 11 0.08
46 1 0.01
47 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (43 bp):
CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGTGAGC
Found at i:10163362 original size:15 final size:14
Alignment explanation
Indices: 10163344--10163461 Score: 59
Period size: 15 Copynumber: 8.1 Consensus size: 14
10163334 GCTATTATTA
10163344 TTATTATGTTTCTAT
1 TTATTAT-TTTCTAT
*
10163359 TTA-TATTTAT-TTT
1 TTATTATTT-TCTAT
* * *
10163372 TTATTCTAATACTAT
1 TTATTAT-TTTCTAT
10163387 -TATTATTTATCTAAT
1 TTATTATTT-TCT-AT
10163402 TT-TTATTTATCTAT
1 TTATTATTT-TCTAT
10163416 TTA-TA-TTTCTACT
1 TTATTATTTTCTA-T
10163429 ATTATTATATTTCTAT
1 -TTATTAT-TTTCTAT
*
10163445 TTATTATATTTTTAT
1 TTATTAT-TTTCTAT
10163460 TT
1 TT
10163462 CTATTTATAT
Statistics
Matches: 81, Mismatches: 9, Indels: 26
0.70 0.08 0.22
Matches are distributed among these distances:
12 4 0.05
13 11 0.14
14 22 0.27
15 36 0.44
16 2 0.02
17 6 0.07
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.66
Consensus pattern (14 bp):
TTATTATTTTCTAT
Found at i:10163422 original size:29 final size:28
Alignment explanation
Indices: 10163338--10163448 Score: 74
Period size: 29 Copynumber: 3.9 Consensus size: 28
10163328 ATTATTGCTA
*
10163338 TTAT-TATTATTATGTT-TCTATTTATAT
1 TTATCTATTTTTAT-TTATCTATTTATAT
10163365 TTA--T-TTTTTATTCTAATACTA-TTATTAT
1 TTATCTATTTTTATT-T-AT-CTATTTA-TAT
10163393 TTATCTAATTTTTATTTATCTATTTATAT
1 TTATCT-ATTTTTATTTATCTATTTATAT
* *
10163422 TTCTACTATTATTATATT-TCTATTTAT
1 TTAT-CTATTTTTAT-TTATCTATTTAT
10163449 TATATTTTTA
Statistics
Matches: 69, Mismatches: 3, Indels: 22
0.73 0.03 0.23
Matches are distributed among these distances:
24 1 0.01
25 7 0.10
26 1 0.01
27 7 0.10
28 9 0.13
29 25 0.36
30 10 0.14
31 1 0.01
32 8 0.12
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (28 bp):
TTATCTATTTTTATTTATCTATTTATAT
Found at i:10163438 original size:17 final size:15
Alignment explanation
Indices: 10163416--10163461 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
10163406 ATTTATCTAT
10163416 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
10163433 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
10163448 TTATATTTTTATTT
1 TTATATTTCTATTT
10163462 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:10163461 original size:44 final size:43
Alignment explanation
Indices: 10163342--10163496 Score: 144
Period size: 44 Copynumber: 3.6 Consensus size: 43
10163332 TTGCTATTAT
*
10163342 TATTATTATGTTTCTATTTA-TATTTATTT-TTTAT-TCTAATAC
1 TATTATTAT-TTTCTATTTATTATTTATTTATTTATAT-TTATAC
* *
10163384 TATTATTATTTATCTAATTT-TTATTTATCTATTTATATTTCTAC
1 TATTATTATTT-TCT-ATTTATTATTTATTTATTTATATTTATAC
*
10163428 TATTATTATATTTCTATTTATTATATT-TTTATTTCTATTTATATAC
1 TATTATTAT-TTTCTATTTATTAT-TTATTTATTTATA-TT-TATAC
*
10163474 TAATATTATTTTC-A-TTATTATTT
1 TATTATTATTTTCTATTTATTATTT
10163497 TTCTTATATA
Statistics
Matches: 96, Mismatches: 7, Indels: 20
0.78 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 14 0.15
43 23 0.24
44 34 0.35
45 11 0.11
46 12 0.12
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.65
Consensus pattern (43 bp):
TATTATTATTTTCTATTTATTATTTATTTATTTATATTTATAC
Found at i:10163505 original size:52 final size:54
Alignment explanation
Indices: 10163384--10163505 Score: 125
Period size: 52 Copynumber: 2.4 Consensus size: 54
10163374 ATTCTAATAC
* * *
10163384 TATTATTATTTATC-TA-ATTTTTATTTATCTATTTATATTTCTACTATTATTA
1 TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
* *
10163436 TATT-TCTA--TTTATTATATTTTTA-TT-TCTATTTATA-TACTAATATTATTT
1 TATTAT-TATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
10163485 TCATTATTATTTTTCTTATAT
1 T-ATTATTATTTTTCTTATAT
10163506 ATGTTTTTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
49 12 0.21
50 17 0.30
51 6 0.11
52 22 0.39
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (54 bp):
TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
Found at i:10166757 original size:14 final size:15
Alignment explanation
Indices: 10166738--10166768 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
10166728 TAATATACAT
10166738 AATTGTTCA-ATAAA
1 AATTGTTCATATAAA
10166752 AATTGTTCATATAAA
1 AATTGTTCATATAAA
10166767 AA
1 AA
10166769 AAAGGATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (15 bp):
AATTGTTCATATAAA
Found at i:10168811 original size:15 final size:15
Alignment explanation
Indices: 10168787--10168816 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10168777 GGTATGGAGC
10168787 GATTACGGTAATTGT
1 GATTACGGTAATTGT
*
10168802 GATTATGGTAATTGT
1 GATTACGGTAATTGT
10168817 TTGCCCTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (15 bp):
GATTACGGTAATTGT
Found at i:10168982 original size:9 final size:9
Alignment explanation
Indices: 10168964--10168994 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
10168954 ATATTTACTT
10168964 AAAT-TTAA
1 AAATATTAA
10168972 AAATATTAA
1 AAATATTAA
10168981 AAATATTAA
1 AAATATTAA
10168990 AAATA
1 AAATA
10168995 AATAGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAATATTAA
Found at i:10170073 original size:13 final size:13
Alignment explanation
Indices: 10170055--10170080 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10170045 TTTTCTTCAT
10170055 TGATTCCTATGTC
1 TGATTCCTATGTC
10170068 TGATTCCTATGTC
1 TGATTCCTATGTC
10170081 ATTAACTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
TGATTCCTATGTC
Found at i:10171904 original size:22 final size:22
Alignment explanation
Indices: 10171879--10171923 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
10171869 ATCTTCTCTC
10171879 TAAAACACCTTTTGACATCTAT
1 TAAAACACCTTTTGACATCTAT
10171901 TAAAACACCTTTTGACATCTAT
1 TAAAACACCTTTTGACATCTAT
10171923 T
1 T
10171924 TTGTTTTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.22, G:0.04, T:0.38
Consensus pattern (22 bp):
TAAAACACCTTTTGACATCTAT
Found at i:10173006 original size:45 final size:45
Alignment explanation
Indices: 10172942--10173031 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
10172932 ATAAGATCAG
10172942 GTGTTATCTAATGGTCCTAAAATTTGAATTTCAGCTATGTATTTA
1 GTGTTATCTAATGGTCCTAAAATTTGAATTTCAGCTATGTATTTA
10172987 GTGTTATCTAATGGTCCTAAAATTTGAATTTCAGCTATGTATTTA
1 GTGTTATCTAATGGTCCTAAAATTTGAATTTCAGCTATGTATTTA
10173032 ACTCTATTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.44
Consensus pattern (45 bp):
GTGTTATCTAATGGTCCTAAAATTTGAATTTCAGCTATGTATTTA
Found at i:10175999 original size:16 final size:16
Alignment explanation
Indices: 10175958--10175990 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
10175948 AAACCCTGAA
10175958 AACCCG-AAAACAAAG
1 AACCCGAAAAACAAAG
10175973 AACCCGAAAAACAAAG
1 AACCCGAAAAACAAAG
10175989 AA
1 AA
10175991 TCCTCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.64, C:0.24, G:0.12, T:0.00
Consensus pattern (16 bp):
AACCCGAAAAACAAAG
Found at i:10177908 original size:24 final size:24
Alignment explanation
Indices: 10177863--10177909 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
10177853 ATAAAAACTA
*
10177863 AACCCTAAAAACTTGAAAACAAAG
1 AACCCTAAAAACGTGAAAACAAAG
*
10177887 AACCCTCAAAACGT-AAACACAAA
1 AACCCTAAAAACGTGAAA-ACAAA
10177910 ATTCTCTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.57, C:0.26, G:0.06, T:0.11
Consensus pattern (24 bp):
AACCCTAAAAACGTGAAAACAAAG
Found at i:10181277 original size:38 final size:38
Alignment explanation
Indices: 10181214--10181402 Score: 229
Period size: 38 Copynumber: 4.9 Consensus size: 38
10181204 ATTTGATGTG
* *
10181214 TATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
10181254 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
*
10181292 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
10181330 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
10181368 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCTGG
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGG
10181403 TGTTATGTTT
Statistics
Matches: 134, Mismatches: 10, Indels: 10
0.87 0.06 0.06
Matches are distributed among these distances:
37 2 0.01
38 94 0.70
39 13 0.10
40 25 0.19
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:10183441 original size:31 final size:32
Alignment explanation
Indices: 10183400--10183459 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
10183390 TCAAAATTAA
* *
10183400 TTATTTTTATTATTATTTT-CTATTATTATAT
1 TTATTATTATTATTATTTTACTACTATTATAT
*
10183431 TTATTATTATTATTGTTTTACTACTATTA
1 TTATTATTATTATTATTTTACTACTATTA
10183460 CTACTATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 17 0.68
32 8 0.32
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.67
Consensus pattern (32 bp):
TTATTATTATTATTATTTTACTACTATTATAT
Found at i:10183554 original size:17 final size:17
Alignment explanation
Indices: 10183532--10183565 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
10183522 AATATATACC
10183532 ATTATTATTATTAATAT
1 ATTATTATTATTAATAT
10183549 ATTATTATTATTAATAT
1 ATTATTATTATTAATAT
10183566 TATCATCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTATTATTATTAATAT
Found at i:10183588 original size:3 final size:3
Alignment explanation
Indices: 10183399--10183568 Score: 53
Period size: 3 Copynumber: 55.7 Consensus size: 3
10183389 TTCAAAATTA
* *
10183399 ATT ATT TTT ATT ATT ATT TTCT ATT ATT A-T ATTT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT A-TT ATT ATT ATT ATT
* * * * * * * * * *
10183445 GTT -TT ACT ACT ATT ACT ACT ATT ATC CTT GTT GACAT AGT A-T ATTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -A-TT ATT ATT A-TT
* * * * **
10183491 ATT -TCT ATT ATT TTCT ATT ATT GTC ATT ATT AAT ATAT ACC ATT ATT
1 ATT AT-T ATT ATT AT-T ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT
* *
10183538 ATT ATT AAT A-T ATT ATT ATT ATT AAT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
10183569 CATCATTTAC
Statistics
Matches: 123, Mismatches: 31, Indels: 26
0.68 0.17 0.14
Matches are distributed among these distances:
2 9 0.07
3 101 0.82
4 12 0.10
5 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:10183626 original size:3 final size:3
Alignment explanation
Indices: 10183618--10183685 Score: 52
Period size: 3 Copynumber: 23.3 Consensus size: 3
10183608 TGTTATGGCT
* * *
10183618 TTA TTA TTA TTA CTA TTA TTA CTA TTT TTA TCT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* * *
10183663 TCA -TC TTA TT- TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
10183686 CAATTTTGTA
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
2 3 0.06
3 45 0.92
4 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:10183678 original size:22 final size:23
Alignment explanation
Indices: 10183645--10183687 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
10183635 ATTACTATTT
*
10183645 TTATCTTTATTATTATTATCATC
1 TTATCTTTATTACTATTATCATC
10183668 TTAT-TTTATTACTATTATCA
1 TTATCTTTATTACTATTATCA
10183688 ATTTTGTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (23 bp):
TTATCTTTATTACTATTATCATC
Found at i:10183750 original size:16 final size:18
Alignment explanation
Indices: 10183719--10183751 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
10183709 TTGTATTATT
10183719 TCTATTATTATATTTTCA
1 TCTATTATTATATTTTCA
10183737 TCTA-TATT-TATTTTC
1 TCTATTATTATATTTTC
10183752 TTATTACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (18 bp):
TCTATTATTATATTTTCA
Found at i:10183778 original size:17 final size:17
Alignment explanation
Indices: 10183753--10183791 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
10183743 TTTATTTTCT
*
10183753 TATTACTTATCTATTTA
1 TATTTCTTATCTATTTA
*
10183770 TATTTCTTATTTATTTA
1 TATTTCTTATCTATTTA
10183787 TATTT
1 TATTT
10183792 TTGTTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTTCTTATCTATTTA
Found at i:10183816 original size:17 final size:17
Alignment explanation
Indices: 10183784--10183818 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
10183774 TCTTATTTAT
* *
10183784 TTATATTTTTGTTATTA
1 TTATATTTTAGGTATTA
10183801 TTATATTTTAGGTATTA
1 TTATATTTTAGGTATTA
10183818 T
1 T
10183819 ATCTCTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (17 bp):
TTATATTTTAGGTATTA
Found at i:10183853 original size:26 final size:26
Alignment explanation
Indices: 10183797--10183854 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
10183787 TATTTTTGTT
10183797 ATTA-TTATATTTTAGGTATTATATC
1 ATTATTTATATTTTAGGTATTATATC
*
10183822 -TCTATTTATA-TTTATGTATTAATATC
1 AT-TATTTATATTTTAGGTATT-ATATC
10183848 ATTATTT
1 ATTATTT
10183855 TACTATTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 1 0.04
25 11 0.39
26 15 0.54
27 1 0.04
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (26 bp):
ATTATTTATATTTTAGGTATTATATC
Found at i:10185887 original size:26 final size:26
Alignment explanation
Indices: 10185858--10185939 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
10185848 TGATACAAAT
10185858 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
10185884 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10185910 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10185936 TGAT
1 TGAT
10185940 GGAAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:10198849 original size:130 final size:130
Alignment explanation
Indices: 10198572--10198826 Score: 325
Period size: 130 Copynumber: 2.0 Consensus size: 130
10198562 TCCATGAGGT
* * *
10198572 AGTAATGGAGCAGATCGAAGATGACGAATCTTGTCTCCCTAAGCAGTAGTGGAACAGATTTAAGC
1 AGTAACGGAGCAGATCGAAGACGACGAATCTTGTCTCCCTAAGCAGTAGTGGAACAAATTTAAGC
* * ** *
10198637 CACCATCCTATCTGCCTAAGCAGTAGTGGAGTAGGCTGAAAATTACAGATCTTATCTTCTTAAGC
66 CACCATCCTATCTCCCTAAGCAGTAGTGGAGCAGGCTGAAAACCACAGATCGTATCTTCTTAAGC
** * ** * *
10198702 AGTAGTGAAGCAGATCGAAGACGGTGAATCTTGTCTCTCTAAGCAGTAGTGGAGCAAATTTAAGC
1 AGTAACGGAGCAGATCGAAGACGACGAATCTTGTCTCCCTAAGCAGTAGTGGAACAAATTTAAGC
* * *
10198767 CACCATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTG-AAACCACA-ATTCGTATTTTCTT
66 CACCATCCTATCTCCCTAAGCAGTAGTGGAGCAGGCTGAAAACCACAGA-TCGTATCTTCTT
10198827 GAAGTTTCAA
Statistics
Matches: 108, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
128 1 0.01
129 16 0.15
130 91 0.84
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (130 bp):
AGTAACGGAGCAGATCGAAGACGACGAATCTTGTCTCCCTAAGCAGTAGTGGAACAAATTTAAGC
CACCATCCTATCTCCCTAAGCAGTAGTGGAGCAGGCTGAAAACCACAGATCGTATCTTCTTAAGC
Found at i:10198904 original size:88 final size:88
Alignment explanation
Indices: 10198808--10199341 Score: 753
Period size: 88 Copynumber: 6.1 Consensus size: 88
10198798 CAGGTTGAAA
* * * * *
10198808 CCACAATTCGTATTTTCTTGAAGTTTCAACGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTAA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGA
*
10198873 AATGGCATTGGAGTGGCTCGAAG
66 AATGGCATTGGAGCGGCTCGAAG
* * * ** *
10198896 CCACAATTCGTATCTCCTTAAAGTTTCAGCAGAGTTTATCGATGCTACAAATCTCTTCTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGA
*
10198961 AATGACATTGGAGCGGCTCGAAG
66 AATGGCATTGGAGCGGCTCGAAG
* *
10198984 CCACAATTCGTATCTCCTTGAAGTTCCAACGGAGTAGATCGAGGCTACAAATCTCTTCTCCTTGA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGA
* * *
10199049 AATGGTATTGGAGCGGCTCAAAA
66 AATGGCATTGGAGCGGCTCGAAG
* * * * *
10199072 CCACAATTCGTATCTCATTAAAGTTTCAGCAGAGTAGATCGACGCTACAAATCTCTTCTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGA
* *
10199137 AATGACATTGGAGCAGCTCGAAG
66 AATGGCATTGGAGCGGCTCGAAG
* * **
10199160 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGGGTAGATCGATGCTACAAATCTCTTCTCATTGA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGA
* *
10199225 AACGGCATTGGAGCGACTCGAAG
66 AATGGCATTGGAGCGGCTCGAAG
* *
10199248 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCAAGGCTACAAATCTCTTCTTCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGA
**
10199313 AATGGCATTGGAGCGGCTTAAAG
66 AATGGCATTGGAGCGGCTCGAAG
10199336 CCACAA
1 CCACAA
10199342 ATCACAAACC
Statistics
Matches: 389, Mismatches: 57, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 389 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (88 bp):
CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGA
AATGGCATTGGAGCGGCTCGAAG
Found at i:10199449 original size:45 final size:45
Alignment explanation
Indices: 10199346--10199969 Score: 310
Period size: 44 Copynumber: 13.8 Consensus size: 45
10199336 CCACAAATCA
* * * * ** *
10199346 CAAACCTTATCTCCCTGAAGTAGCAGTGAAGCAGGTCAAAGTTA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * *
10199390 CAAGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * *
10199435 CGAATCTTATCTCCCTTAAGTTGCAGTGGAGTAGATTGAAGCTAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * *
10199480 AAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTA-
1 ------CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * *
10199530 CAAGTCTTATCTCCTTGAATTTGCAGTGGAGCAGACTGGAGATAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * *
10199575 CAAATCTCATTTCCCTGAAGATGCAGTGGAACAGATTGAAGTTATA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--ATAG
* * * **
10199621 AATAGATCTTATC-CCCTGAAGTTGCAGT--AGAACA-T-ATCATAG
1 CA-A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * * **
10199663 AAAATCTTATCTCCCTTAAGTTGTAGTCGAGTAGATTGAAGCCA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * * *
10199707 CTAACCTTATCCCCCTGAAATTGCAGTGGAACAGATTGAAGTTATAAATAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG------AT-AG
* * * * *
10199759 CAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGA-T---CATAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * * **
10199800 AAAATATTATCTCCCTTAAGTTGTAGTGGAGTAGATTGAAGCCA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * * * *
10199844 CTAACCTTATCCCCCTGAAATTACAGTGGGGCA-AGTT-ATAGTTA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGA-AGATAG
* * * *
10199888 CAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATGG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * *
10199933 CAGATCTTATCTCCTTGAAGTTGCAATGGAGCAGATT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
10199970 AAGCTACAAT
Statistics
Matches: 422, Mismatches: 123, Indels: 69
0.69 0.20 0.11
Matches are distributed among these distances:
40 8 0.02
41 44 0.10
42 5 0.01
43 7 0.02
44 157 0.37
45 111 0.26
46 1 0.00
47 18 0.04
48 6 0.01
51 39 0.09
52 26 0.06
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (45 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
Found at i:10199557 original size:140 final size:139
Alignment explanation
Indices: 10199340--10199785 Score: 406
Period size: 140 Copynumber: 3.2 Consensus size: 139
10199330 TTAAAGCCAC
*
10199340 AAATCACAAACCTTATCTCCCTGAAGTAGCAGTGAAGCAGGTCAAAGTTACAAGTCTTATCTCCC
1 AAATCACAAACCTTATCTCCCTGAAGTTGCAGTGAA-CAGGTCAAAGTTACAAGTCTTATCTCCC
* * * * **
10199405 TAAAGTTACAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCCCTTAAGTTGCAGTGGAGTAGA
65 TAAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTCATCTCCCTGAAGATGCAGTGGAACAGA
10199470 TTGAAGCTAG
130 TTGAAGCTAG
** *
10199480 AAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTACAAGTCTTATCTCCT
1 AAATCACAAACCTTATCTCCCTGAAGTTGCAGT-GAACAGGTCAAAGTTACAAGTCTTATCTCCC
* * * * *
10199545 TGAATTTGCAGTGGAGCAGACTGGAGATAGCAAATCTCATTTCCCTGAAGATGCAGTGGAACAGA
65 TAAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTCATCTCCCTGAAGATGCAGTGGAACAGA
* *
10199610 TTGAAGTTAT
130 TTGAAGCTAG
* * ** * *
10199620 AAAT---AGATCTTATC-CCCTGAAGTTGCAGTAGAACATATCATAG--A-AAATCTTATCTCCC
1 AAATCACAAACCTTATCTCCCTGAAGTTGCAGT-GAACAGGTCAAAGTTACAAGTCTTATCTCCC
* ** * * * ** * * * *
10199678 TTAAGTTGTAGTCGAGTAGATTGAAGCCA-CTAACCTTATCCCCCTGAA-ATTGCAGTGGAACAG
65 TAAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTCATCTCCCTGAAGA-TGCAGTGGAACAG
* *
10199741 ATTGAAGTTAT
129 ATTGAAGCTAG
* * * * *
10199752 AAATAAACAGATCTTATCTCTCTGAAGTTACAGT
1 AAAT-CACAAACCTTATCTCCCTGAAGTTGCAGT
10199786 AGAGCAGATC
Statistics
Matches: 256, Mismatches: 43, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
131 1 0.00
132 42 0.16
133 32 0.12
134 1 0.00
136 33 0.13
137 21 0.08
140 123 0.48
141 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (139 bp):
AAATCACAAACCTTATCTCCCTGAAGTTGCAGTGAACAGGTCAAAGTTACAAGTCTTATCTCCCT
AAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTCATCTCCCTGAAGATGCAGTGGAACAGAT
TGAAGCTAG
Found at i:10199740 original size:132 final size:134
Alignment explanation
Indices: 10199587--10199872 Score: 452
Period size: 137 Copynumber: 2.1 Consensus size: 134
10199577 AATCTCATTT
*
10199587 CCCTGAAGA-TGCAGTGGAACAGATTGAAGTTATAAAT-AGATCTTATC-CCCTGAAGTTGCAGT
1 CCCTGAA-ATTGCAGTGGAACAGATTGAAGTTATAAATAAGATCTTATCTCCCTGAAGTTACAGT
* *
10199649 AGAACATATCATAGAAAATCTTATCTCCCTTAAGTTGTAGTCGAGTAGATTGAAGCCACTAACCT
65 AGAACAGATCATAGAAAATATTATCTCCCTTAAGTTGTAGTCGAGTAGATTGAAGCCACTAACCT
10199714 TATCC
130 TATCC
*
10199719 CCCTGAAATTGCAGTGGAACAGATTGAAGTTATAAATAAACAGATCTTATCTCTCTGAAGTTACA
1 CCCTGAAATTGCAGTGGAACAGATTGAAGTTATAAAT--A-AGATCTTATCTCCCTGAAGTTACA
* *
10199784 GTAGAGCAGATCATAGAAAATATTATCTCCCTTAAGTTGTAGTGGAGTAGATTGAAGCCACTAAC
63 GTAGAACAGATCATAGAAAATATTATCTCCCTTAAGTTGTAGTCGAGTAGATTGAAGCCACTAAC
10199849 CTTATCC
128 CTTATCC
*
10199856 CCCTGAAATTACAGTGG
1 CCCTGAAATTGCAGTGG
10199873 GGCAAGTTAT
Statistics
Matches: 141, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
131 1 0.01
132 35 0.25
136 10 0.07
137 95 0.67
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (134 bp):
CCCTGAAATTGCAGTGGAACAGATTGAAGTTATAAATAAGATCTTATCTCCCTGAAGTTACAGTA
GAACAGATCATAGAAAATATTATCTCCCTTAAGTTGTAGTCGAGTAGATTGAAGCCACTAACCTT
ATCC
Found at i:10201440 original size:31 final size:32
Alignment explanation
Indices: 10201399--10201458 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
10201389 TCAAAATTAA
* *
10201399 TTATTTTTATTATTATTTT-CTATTATTATAT
1 TTATTATTATTATTATTTTACTACTATTATAT
*
10201430 TTATTATTATTATTGTTTTACTACTATTA
1 TTATTATTATTATTATTTTACTACTATTA
10201459 CTACTATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 17 0.68
32 8 0.32
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.67
Consensus pattern (32 bp):
TTATTATTATTATTATTTTACTACTATTATAT
Found at i:10201553 original size:17 final size:17
Alignment explanation
Indices: 10201515--10201564 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
10201505 TATTATTGTC
*
10201515 ATTATTAATATATACCATT
1 ATTATTAATA-ATA-TATT
10201534 ATTATTAATAATATATT
1 ATTATTAATAATATATT
*
10201551 ATTATTATTAATAT
1 ATTATTAATAATAT
10201565 TATCATCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 16 0.55
18 3 0.10
19 10 0.34
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTATTAATAATATATT
Found at i:10201554 original size:20 final size:20
Alignment explanation
Indices: 10201515--10201563 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
10201505 TATTATTGTC
10201515 ATTATTAAT-ATATACCATT
1 ATTATTAATAATATACCATT
**
10201534 ATTATTAATAATATATTATT
1 ATTATTAATAATATACCATT
10201554 ATTATTAATA
1 ATTATTAATA
10201564 TTATCATCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTATTAATAATATACCATT
Found at i:10201623 original size:3 final size:3
Alignment explanation
Indices: 10201617--10201734 Score: 57
Period size: 3 Copynumber: 40.3 Consensus size: 3
10201607 TATTATGGCT
* * * *
10201617 TTA TTA TTA TTA CTA TTA TTA CTA TTT TTA TCT- TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* * * * * *
10201662 TTA TTA TCA -TC TTA TT- TTA TTA CTA TTA TCAA TT- TTG TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* * * *
10201705 CTA TTA CTA TT- GTA TTA TTA CTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10201735 ATTTTCATCT
Statistics
Matches: 81, Mismatches: 27, Indels: 14
0.66 0.22 0.11
Matches are distributed among these distances:
2 6 0.07
3 72 0.89
4 3 0.04
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:10201783 original size:17 final size:17
Alignment explanation
Indices: 10201758--10201795 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
10201748 TTTATTTTCT
10201758 TATTACTTATCTATTTA
1 TATTACTTATCTATTTA
* *
10201775 TATTCCTTATTTATTTA
1 TATTACTTATCTATTTA
10201792 TATT
1 TATT
10201796 TTTGTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTACTTATCTATTTA
Found at i:10201796 original size:23 final size:23
Alignment explanation
Indices: 10201744--10201794 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
10201734 TATTTTCATC
*
10201744 TATATTTATTTTCTTATTACTTA
1 TATATTTATTTCCTTATTACTTA
* *
10201767 TCTATTTATATTCCTTATTTATTTA
1 TATATTTAT-TTCCTTA-TTACTTA
10201792 TAT
1 TAT
10201795 TTTTGTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
23 8 0.36
24 6 0.27
25 8 0.36
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (23 bp):
TATATTTATTTCCTTATTACTTA
Found at i:10201821 original size:17 final size:17
Alignment explanation
Indices: 10201789--10201823 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
10201779 CCTTATTTAT
* *
10201789 TTATATTTTTGTTATTA
1 TTATATTTTAGGTATTA
10201806 TTATATTTTAGGTATTA
1 TTATATTTTAGGTATTA
10201823 T
1 T
10201824 ATCTCTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (17 bp):
TTATATTTTAGGTATTA
Found at i:10201858 original size:26 final size:26
Alignment explanation
Indices: 10201802--10201859 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
10201792 TATTTTTGTT
10201802 ATTA-TTATATTTTAGGTATTATATC
1 ATTATTTATATTTTAGGTATTATATC
*
10201827 -TCTATTTATA-TTTATGTATTAATATC
1 AT-TATTTATATTTTAGGTATT-ATATC
10201853 ATTATTT
1 ATTATTT
10201860 TACTATTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 1 0.04
25 11 0.39
26 15 0.54
27 1 0.04
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (26 bp):
ATTATTTATATTTTAGGTATTATATC
Found at i:10203732 original size:86 final size:85
Alignment explanation
Indices: 10203594--10203792 Score: 208
Period size: 86 Copynumber: 2.3 Consensus size: 85
10203584 TTTTTTAAAA
* * * * * *
10203594 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTCTTCGCAAACGCCGCTA-AAGACCATGA
1 AAACGCCGCTAAAGACCACGACTTTTAACGGCGCTTTCTTCCCAAACACCGCTATAA-AACA-AA
* * *
10203658 CTTTTAGCGGCGC-TTTCTTCGC
64 CCTTTAGCGACGCTTTTC-TCAC
*
10203680 AAACGCCGCTAAAGACCACGGCTTTTAACGGCGC-TT-TTCCCAAAAACACCGCTATAAAACAAA
1 AAACGCCGCTAAAGACCACGACTTTTAACGGCGCTTTCTTCCC--AAACACCGCTATAAAACAAA
10203743 CCTTTAGCGACGCTTTTCTCAC
64 CCTTTAGCGACGCTTTTCTCAC
* * *
10203765 AAACGCCGCTAAAAACCATGACCTTTAA
1 AAACGCCGCTAAAGACCACGACTTTTAA
10203793 AAAAATATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
84 4 0.04
85 41 0.43
86 48 0.51
87 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.23
Consensus pattern (85 bp):
AAACGCCGCTAAAGACCACGACTTTTAACGGCGCTTTCTTCCCAAACACCGCTATAAAACAAACC
TTTAGCGACGCTTTTCTCAC
Found at i:10203733 original size:43 final size:43
Alignment explanation
Indices: 10203594--10203716 Score: 219
Period size: 43 Copynumber: 2.9 Consensus size: 43
10203584 TTTTTTAAAA
10203594 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTCTTCGC
1 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTCTTCGC
10203637 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTCTTCGC
1 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTCTTCGC
* * *
10203680 AAACGCCGCTAAAGACCACGGCTTTTAACGGCGCTTT
1 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTT
10203717 TCCCAAAAAC
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 77 1.00
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTCTTCGC
Found at i:10208050 original size:40 final size:40
Alignment explanation
Indices: 10207995--10208078 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
10207985 AAAATTGAAT
* * *
10207995 AGATCGAGTATTAGCGGTG-TTTCTAGAAAAGCGCCGCTAA
1 AGATCGAGAATTAGCGGCGTTTTCTAG-AAAGCGCCGCAAA
* *
10208035 AGATCGAGAATTAGCGGCGTTTTTTAGGAAGCGCCGCAAA
1 AGATCGAGAATTAGCGGCGTTTTCTAGAAAGCGCCGCAAA
10208075 AGAT
1 AGAT
10208079 TGACCTATAG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
40 32 0.84
41 6 0.16
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (40 bp):
AGATCGAGAATTAGCGGCGTTTTCTAGAAAGCGCCGCAAA
Found at i:10208999 original size:21 final size:21
Alignment explanation
Indices: 10208965--10209008 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
10208955 TTATAAAACG
* *
10208965 TCTTAAAACTATAAACCTTAAA
1 TCTTAAAACCAT-AACCCTAAA
10208987 TCTT-AAACCATAACCCTAAA
1 TCTTAAAACCATAACCCTAAA
10209007 TC
1 TC
10209009 CAAAAGTACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.50
21 6 0.30
22 4 0.20
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (21 bp):
TCTTAAAACCATAACCCTAAA
Found at i:10213652 original size:23 final size:23
Alignment explanation
Indices: 10213622--10213671 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
10213612 AACATTAATC
*
10213622 AAATGTATGAATTGCAGCCTTTT
1 AAATGTATGAATTGCAGCCCTTT
10213645 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
10213668 AAAT
1 AAAT
10213672 AAACTTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (23 bp):
AAATGTATGAATTGCAGCCCTTT
Found at i:10214227 original size:241 final size:241
Alignment explanation
Indices: 10213804--10214290 Score: 902
Period size: 241 Copynumber: 2.0 Consensus size: 241
10213794 ATGAATTAAT
10213804 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
10213869 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
* * **
10213934 CTGTAAGATATAATGGATCCTCGCTAGGTGTAACAATGCCACGTATGATGAATTTTAAAATTTTC
131 CTGTAAGATATAATGGATCCTCGCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
10213999 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
10214045 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
10214110 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
10214175 CTGTAAGATATAATGGATCCTCTCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCGCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
* *
10214240 AAAAAGACTTGGAAAAAGTTCTATCGATCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
10214286 TTTAT
1 TTTAT
10214291 ATAACCTTAA
Statistics
Matches: 238, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
241 238 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCGCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:10214539 original size:9 final size:9
Alignment explanation
Indices: 10214471--10214637 Score: 127
Period size: 9 Copynumber: 17.6 Consensus size: 9
10214461 ATTGATCATT
*
10214471 ACTTAAATA
1 ACTTACATA
*
10214480 AATTACATA
1 ACTTACATA
*
10214489 ACTTATATA
1 ACTTACATA
* *
10214498 ACTCATATA
1 ACTTACATA
*
10214507 ACTTACACA
1 ACTTACATA
*
10214516 ATTTACATAACA
1 ACTTACAT---A
10214528 ACTTACATA
1 ACTTACATA
**
10214537 ACTCGCATA
1 ACTTACATA
10214546 ACTTACATA
1 ACTTACATA
*
10214555 ATTTACATAACA
1 ACTTACAT---A
10214567 ACTTACATA
1 ACTTACATA
*
10214576 ACTCACATA
1 ACTTACATA
10214585 ACTTACATA
1 ACTTACATA
*
10214594 ATTTACATA
1 ACTTACATA
*
10214603 ACTCACATA
1 ACTTACATA
*
10214612 ACGTACATAACA
1 ACTTACAT---A
10214624 ACTTACATA
1 ACTTACATA
10214633 ACTTA
1 ACTTA
10214638 ACTAATACAT
Statistics
Matches: 124, Mismatches: 25, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
9 100 0.81
12 24 0.19
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:10214547 original size:39 final size:39
Alignment explanation
Indices: 10214488--10214604 Score: 198
Period size: 39 Copynumber: 3.0 Consensus size: 39
10214478 TAAATTACAT
* * *
10214488 AACTTATATAACTCATATAACTTACACAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
*
10214527 AACTTACATAACTCGCATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
10214566 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
10214605 TCACATAACG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:10214588 original size:57 final size:57
Alignment explanation
Indices: 10214527--10214635 Score: 164
Period size: 57 Copynumber: 1.9 Consensus size: 57
10214517 TTTACATAAC
* * **
10214527 AACTTACATAACTCGCATAACTTACATAATTTACATAACAACTTACATAACTCACAT
1 AACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTCACAT
* *
10214584 AACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 AACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
10214636 TAACTAATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.45, C:0.24, G:0.02, T:0.29
Consensus pattern (57 bp):
AACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTCACAT
Found at i:10214633 original size:39 final size:37
Alignment explanation
Indices: 10214471--10214622 Score: 157
Period size: 39 Copynumber: 4.1 Consensus size: 37
10214461 ATTGATCATT
* * * * *
10214471 ACTTAAATAAATTACAT-AACTTATATAACTCATATA
1 ACTTACATAATTTACATAAACTCACATAACTCACATA
* * *
10214507 ACTTACACAATTTACATAACAACTTACATAACTCGCATA
1 ACTTACATAATTTACAT-A-AACTCACATAACTCACATA
*
10214546 ACTTACATAATTTACATAACAACTTACATAACTCACATA
1 ACTTACATAATTTACAT-A-AACTCACATAACTCACATA
10214585 ACTTACATAATTTACAT-AACTCACATAACGT-ACATA
1 ACTTACATAATTTACATAAACTCACATAAC-TCACATA
10214621 AC
1 AC
10214623 AACTTACATA
Statistics
Matches: 103, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
36 32 0.31
37 1 0.01
39 70 0.68
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (37 bp):
ACTTACATAATTTACATAAACTCACATAACTCACATA
Found at i:10214636 original size:48 final size:47
Alignment explanation
Indices: 10214482--10214637 Score: 159
Period size: 48 Copynumber: 3.3 Consensus size: 47
10214472 CTTAAATAAA
* * * * *
10214482 TTACATAACTTATATAACTCATATAACTTACACAATTTACATAACAAC
1 TTACATAACTTACATAACTTACATAACTTACATAA-CTACATAACAAC
** * * * *
10214530 TTACATAACTCGCATAACTTACATAATTTACATAACAACTTACATAAC
1 TTACATAACTTACATAACTTACATAACTTACATAACTACATA-ACAAC
* * *
10214578 TCACATAACTTACATAATTTACATAACTCACATAACGTACATAACAAC
1 TTACATAACTTACATAACTTACATAACTTACATAAC-TACATAACAAC
10214626 TTACATAACTTA
1 TTACATAACTTA
10214638 ACTAATACAT
Statistics
Matches: 85, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
47 4 0.05
48 77 0.91
49 4 0.05
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.31
Consensus pattern (47 bp):
TTACATAACTTACATAACTTACATAACTTACATAACTACATAACAAC
Found at i:10221000 original size:14 final size:14
Alignment explanation
Indices: 10220983--10221013 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
10220973 CTAAATCAAG
*
10220983 AACCCTTAACCCTT
1 AACCCTTAACCCCT
10220997 AACCCTTAACCCCT
1 AACCCTTAACCCCT
10221011 AAC
1 AAC
10221014 ACCTAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.45, G:0.00, T:0.23
Consensus pattern (14 bp):
AACCCTTAACCCCT
Found at i:10221041 original size:21 final size:21
Alignment explanation
Indices: 10220990--10221041 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
10220980 AAGAACCCTT
** * *
10220990 AACCCTTAACCCTTAACCCCT
1 AACCCTTAAAACTTAAACCCC
10221011 AACACC-TAAAACTTAAACCCC
1 AAC-CCTTAAAACTTAAACCCC
10221032 AACCCTTAAA
1 AACCCTTAAA
10221042 CCACACTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 2 0.08
21 21 0.84
22 2 0.08
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.19
Consensus pattern (21 bp):
AACCCTTAAAACTTAAACCCC
Found at i:10221066 original size:25 final size:25
Alignment explanation
Indices: 10221021--10221068 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
10221011 AACACCTAAA
*
10221021 ACTTAAACCCCAACCCTTAAACCAC
1 ACTTAAACCACAACCCTTAAACCAC
*
10221046 ACTTAAACCATAATCCC-TAAACC
1 ACTTAAACCACAA-CCCTTAAACC
10221069 TTAAAATAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.19
Consensus pattern (25 bp):
ACTTAAACCACAACCCTTAAACCAC
Found at i:10221720 original size:41 final size:40
Alignment explanation
Indices: 10221590--10221720 Score: 127
Period size: 41 Copynumber: 3.2 Consensus size: 40
10221580 GTTATATGAC
* * * * **
10221590 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACAAAAAACGCCGATATTGCTC-CAT
* * * * * *
10221631 TTTTAGCAGCGATTTACAAAAAAATGCAGATATTTCTCTAT
1 TTTTAGCGGCGTTTTAC-AAAAAACGCCGATATTGCTCCAT
10221672 TTTTAGCGGCGTTTTAACAAAAAACGCCGATATTGCTCCAT
1 TTTTAGCGGCGTTTT-ACAAAAAACGCCGATATTGCTCCAT
10221713 TTTTAGCG
1 TTTTAGCG
10221721 TGCTCTGTGT
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
41 56 0.79
42 15 0.21
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACAAAAAACGCCGATATTGCTCCAT
Found at i:10223602 original size:20 final size:20
Alignment explanation
Indices: 10223572--10223651 Score: 63
Period size: 20 Copynumber: 3.8 Consensus size: 20
10223562 TTATTATTAA
10223572 ATTAAATTTAATATTAAATAT
1 ATTAAA-TTAATATTAAATAT
*
10223593 ATTAAATTAATA-GAATATTTAT
1 ATTAAATTAATATTAA-A--TAT
* *
10223615 GTATAAGATAAATATTAAATAT
1 AT-TAA-ATTAATATTAAATAT
*
10223637 ATTAAAATAATATTA
1 ATTAAATTAATATTA
10223652 TTTTTGGAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 13
0.70 0.11 0.20
Matches are distributed among these distances:
19 2 0.04
20 15 0.33
21 9 0.20
22 8 0.17
23 3 0.07
24 7 0.15
25 2 0.04
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (20 bp):
ATTAAATTAATATTAAATAT
Found at i:10223619 original size:26 final size:23
Alignment explanation
Indices: 10223542--10223611 Score: 79
Period size: 23 Copynumber: 2.9 Consensus size: 23
10223532 AATCATTTTA
10223542 ATATTAAATTAATATAATACTTAT
1 ATATTAAATTAATATAATA-TTAT
*
10223566 -TATTAAATTAAATTTAATATTAAAT
1 ATATTAAATT-AATATAATATT--AT
*
10223591 ATATTAAATTAATAGAATATT
1 ATATTAAATTAATATAATATT
10223612 TATGTATAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 11 0.28
24 8 0.21
25 11 0.28
26 9 0.23
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (23 bp):
ATATTAAATTAATATAATATTAT
Found at i:10238221 original size:18 final size:18
Alignment explanation
Indices: 10238195--10238231 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
10238185 GGTTTGTAAA
*
10238195 ATAATAAAATAAAATTGC
1 ATAAAAAAATAAAATTGC
10238213 ATAAAAAAATAAAATTGC
1 ATAAAAAAATAAAATTGC
10238231 A
1 A
10238232 AGAAGTAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.24
Consensus pattern (18 bp):
ATAAAAAAATAAAATTGC
Found at i:10247462 original size:18 final size:18
Alignment explanation
Indices: 10247434--10247477 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
10247424 GAGAGCAGGG
10247434 AAAGG-AAAGAAAGAA-A
1 AAAGGAAAAGAAAGAAGA
10247450 AAAGAGAAAAGAAAGAAGA
1 AAAG-GAAAAGAAAGAAGA
10247469 AAAGGAAAA
1 AAAGGAAAA
10247478 ATTGAAGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.16
17 1 0.04
18 15 0.60
19 5 0.20
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (18 bp):
AAAGGAAAAGAAAGAAGA
Found at i:10247691 original size:17 final size:16
Alignment explanation
Indices: 10247663--10247715 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
10247653 TTTGGTTCGC
10247663 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
10247679 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
10247696 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
10247712 TGTA
1 TGTA
10247716 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:10247972 original size:18 final size:17
Alignment explanation
Indices: 10247951--10247985 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10247941 TTATTATTAA
*
10247951 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
10247969 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
10247986 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:10248032 original size:61 final size:61
Alignment explanation
Indices: 10247966--10248153 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
10247956 TTTTAATTAA
10247966 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
10248027 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
*
10248086 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
10248147 AATATAT
1 AATATAT
10248154 GATACTATAA
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 30 0.31
60 23 0.24
61 37 0.39
62 3 0.03
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.43
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:10248099 original size:14 final size:15
Alignment explanation
Indices: 10248050--10248101 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
10248040 ATAAAATATA
10248050 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
10248065 TATTAAATATATTAT
1 AATTAAATATATTAT
10248080 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
10248093 AATTTAATA
1 AATTAAATA
10248102 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:10248147 original size:120 final size:121
Alignment explanation
Indices: 10247934--10248226 Score: 518
Period size: 120 Copynumber: 2.4 Consensus size: 121
10247924 ATCATATTTA
10247934 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
10247999 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* *
10248054 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
10248119 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* *
10248175 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
10248227 TAAAATAATT
Statistics
Matches: 165, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 163 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
Found at i:10248273 original size:101 final size:93
Alignment explanation
Indices: 10248167--10248449 Score: 317
Period size: 91 Copynumber: 3.0 Consensus size: 93
10248157 ACTATAAAAG
* * * *
10248167 ATAATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATTTAAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTT---
* *
10248231 ATAATTATAACTAATAAATTATCTTATATGAATTTGT
62 -T--CT-TAA-TAATAAATTATCTTATATGAATTTAT
* *
10248268 ATAATTTAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
* *
10248331 GATAATAAATTTTCTTATATGAATTTAT
66 AATAATAAATTATCTTATATGAATTTAT
* *
10248359 ACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
10248422 AATAATAAAATGT-TCTTATATGAATTTA
66 AATAAT-AAAT-TATCTTATATGAATTTA
10248450 CTAAAATCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 15
0.85 0.08 0.08
Matches are distributed among these distances:
91 88 0.54
92 21 0.13
93 2 0.01
95 1 0.01
99 1 0.01
100 3 0.02
101 48 0.29
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (93 bp):
ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
AATAATAAATTATCTTATATGAATTTAT
Found at i:10248296 original size:26 final size:28
Alignment explanation
Indices: 10248267--10248327 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
10248257 TATGAATTTG
*
10248267 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
10248293 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
10248321 TAAAATT
1 TATAATT
10248328 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:10248325 original size:47 final size:46
Alignment explanation
Indices: 10248274--10248417 Score: 113
Period size: 47 Copynumber: 3.1 Consensus size: 46
10248264 TTGTATAATT
10248274 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTATTATTA-ATATAATTTAATAATAATATATAATTTCA
* ** * *
10248321 TAAAAT--TCT-TGA-TAATA-AATTTTCTTATATGAATTTATACAATT--
1 TAAAATAAT-TATTATTAATATAA-TTTAATA-AT-AATATATA-ATTTCA
* *
10248365 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTATTATT-AATATAATTTAATAATAATATATAATTTCA
10248412 TAAAAT
1 TAAAAT
10248418 TCTTAATAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 26
0.65 0.11 0.24
Matches are distributed among these distances:
42 2 0.03
43 8 0.11
44 10 0.14
45 14 0.19
46 12 0.17
47 15 0.21
48 9 0.12
49 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (46 bp):
TAAAATAATTATTATTAATATAATTTAATAATAATATATAATTTCA
Found at i:10248337 original size:91 final size:90
Alignment explanation
Indices: 10248242--10248449 Score: 326
Period size: 91 Copynumber: 2.3 Consensus size: 90
10248232 TAATTATAAC
* * * *
10248242 TAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
10248307 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
10248333 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
10248398 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
10248424 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
10248450 CTAAAATCAA
Statistics
Matches: 108, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
91 87 0.81
92 21 0.19
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:10248409 original size:44 final size:43
Alignment explanation
Indices: 10248267--10248409 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 43
10248257 TATGAATTTG
* *
10248267 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * *
10248311 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
10248358 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
10248402 TATAATTT
1 TATAATTT
10248410 CATAAAATTC
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
43 3 0.04
44 32 0.43
45 7 0.09
46 7 0.09
47 22 0.30
48 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:10248424 original size:47 final size:47
Alignment explanation
Indices: 10248292--10248430 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
10248282 TTATTATTAC
* *
10248292 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
10248339 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
10248383 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
10248430 A
1 A
10248431 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:10250494 original size:104 final size:104
Alignment explanation
Indices: 10250356--10250780 Score: 638
Period size: 104 Copynumber: 4.1 Consensus size: 104
10250346 ATCAGGCACC
* * * * * * * *
10250356 AACCACTAAGTTAAATACTCGAGTTTATGCGAAAATTA-CAGATCAAAAACAAACTCCTGCTACA
1 AACCTCTAAGTTAAATACTCAAGTTTAAGCGAAAATGATGA-ATCAAAATCAAACTCATTCTACA
*
10250420 ATGTAAGAGCTTTGATTAATTATTTACATAAAAATCTTGA
65 ATGTAAGAGCTTTGATTCATTATTTACATAAAAATCTTGA
*
10250460 AACCTCTAAGTTAAATACTCAAGTTTAAGTGAAAATGATGAATCAAAATCAAACTCATTCTACAA
1 AACCTCTAAGTTAAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
* * *
10250525 TGTAAGAGCTTTGATTCCTTGTTTACATGAAAATCTTGA
66 TGTAAGAGCTTTGATTCATTATTTACATAAAAATCTTGA
*
10250564 AACCTCTAAGTTAAATATTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
1 AACCTCTAAGTTAAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
* * *
10250629 TGTAAGAGCTTTGATTCATTATTTACATGAAAATTTTTA
66 TGTAAGAGCTTTGATTCATTATTTACATAAAAATCTTGA
*
10250668 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
1 AACCTCTAAGTTAAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
*
10250733 TGTAAGAGCTTTGATTCATTACTTACA-AGAAAATCTTGA
66 TGTAAGAGCTTTGATTCATTATTTACATA-AAAATCTTGA
*
10250772 AGCCTCTAA
1 AACCTCTAA
10250781 ATTTACAACA
Statistics
Matches: 293, Mismatches: 26, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
104 292 1.00
105 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.32
Consensus pattern (104 bp):
AACCTCTAAGTTAAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
TGTAAGAGCTTTGATTCATTATTTACATAAAAATCTTGA
Found at i:10253787 original size:46 final size:46
Alignment explanation
Indices: 10253735--10254009 Score: 336
Period size: 46 Copynumber: 6.0 Consensus size: 46
10253725 GCTCTCTGAA
* * *
10253735 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
10253781 ATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGAAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
10253827 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
10253873 ATGAAATGAATAAGACCATGGTTGAAACATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
10253919 GGGAAAATGAATAAGATCATGGTTGAAAGATACCATGGCAACATGAC
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * * *
10253966 A-GAAAACGAGTAAAACCTTAGTTGAAAGATACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
10254010 TCGAAGATAA
Statistics
Matches: 204, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 163 0.80
47 41 0.20
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Done.