Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 46 of 333
Found at i:13203673 original size:39 final size:39
Alignment explanation
Indices: 13203612--13203742 Score: 199
Period size: 39 Copynumber: 3.4 Consensus size: 39
13203602 ATCGTGATCT
** *
13203612 GAAGCCCGAAGTTTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
* * *
13203651 GAAGCCCGAAGGCTAACAGAAGCACATAAGTACTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
13203690 GAAGCCTGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
13203729 GAAGCCCGAAGGCT
1 GAAGCCCGAAGGCT
13203743 TCCGTAGGTA
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:13206835 original size:43 final size:43
Alignment explanation
Indices: 13206776--13207111 Score: 582
Period size: 43 Copynumber: 7.8 Consensus size: 43
13206766 TTTATTGGAA
*
13206776 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
13206819 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* * *
13206862 AAAAGTGCCGCTAAAGGTCAAGACTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
13206905 AAAAGCGCCGCTATAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
13206948 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
13206991 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
13207034 AAAAGCGCCGCTATAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
**
13207077 AAAAGCGCCGCTAAACATCAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
13207112 CTTTTTTACA
Statistics
Matches: 276, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 276 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:13207220 original size:31 final size:31
Alignment explanation
Indices: 13207185--13207251 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
13207175 CTTCCTGCAT
* *
13207185 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * *
13207216 TAAAATGCAGCCAAAAACAACAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
13207247 TAAAA
1 TAAAA
13207252 ATACAACTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.61, C:0.18, G:0.03, T:0.18
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:13207555 original size:21 final size:21
Alignment explanation
Indices: 13207509--13207555 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
13207499 TGCTCGTGCT
*
13207509 TCTGCCTCTCTCGCTGTAGCC
1 TCTGCCTCCCTCGCTGTAGCC
* *
13207530 GCTGCCTCCCTCTCTGCT-GCC
1 TCTGCCTCCCTCGCTG-TAGCC
13207551 TCTGC
1 TCTGC
13207556 TCTAAGTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.02, C:0.47, G:0.19, T:0.32
Consensus pattern (21 bp):
TCTGCCTCCCTCGCTGTAGCC
Found at i:13213214 original size:9 final size:9
Alignment explanation
Indices: 13213200--13213416 Score: 134
Period size: 9 Copynumber: 23.6 Consensus size: 9
13213190 TATTTAAGTA
13213200 TTATGTAAG
1 TTATGTAAG
*
13213209 TTATGTAAT
1 TTATGTAAG
*
13213218 TTATGATATG
1 TTATG-TAAG
* * *
13213228 ATATAT-AT
1 TTATGTAAG
*
13213236 TTATGTAAA
1 TTATGTAAG
* *
13213245 TTATAT-AT
1 TTATGTAAG
*
13213253 TTATCTAAG
1 TTATGTAAG
*
13213262 TTATATAAG
1 TTATGTAAG
13213271 TTATGTAAG
1 TTATGTAAG
*
13213280 TTATGTAAA
1 TTATGTAAG
*
13213289 TTATGATATAAAA
1 TTATG---T-AAG
*
13213302 TATATTTAAG
1 T-TATGTAAG
13213312 TATTATGTAAG
1 --TTATGTAAG
13213323 TTATGTAAG
1 TTATGTAAG
* *
13213332 TTATAT-AT
1 TTATGTAAG
*
13213340 TTATCTAAG
1 TTATGTAAG
*
13213349 TTATATAAG
1 TTATGTAAG
*
13213358 TTATGTAGG
1 TTATGTAAG
*
13213367 TTATATAAG
1 TTATGTAAG
13213376 TTATGTAAG
1 TTATGTAAG
* *
13213385 TTATATATG
1 TTATGTAAG
*
13213394 TTATATAAG
1 TTATGTAAG
*
13213403 TTATGTAAA
1 TTATGTAAG
13213412 TTATG
1 TTATG
13213417 ATATCAAATA
Statistics
Matches: 162, Mismatches: 35, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
8 16 0.10
9 122 0.75
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:13213279 original size:18 final size:18
Alignment explanation
Indices: 13213200--13213416 Score: 162
Period size: 18 Copynumber: 12.3 Consensus size: 18
13213190 TATTTAAGTA
* *
13213200 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
13213218 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
13213236 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
13213253 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
13213271 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
*
13213289 TTATG--A--TATA-AAA
1 TTATGTAAGTTATATAAG
* *
13213302 TATATTTAAGTATTATGTAAG
1 T-TATGTAAG--TTATATAAG
*
13213323 TTATGTAAGTTATAT-AT
1 TTATGTAAGTTATATAAG
*
13213340 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
13213358 TTATGTAGGTTATATAAG
1 TTATGTAAGTTATATAAG
*
13213376 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
13213394 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
13213412 TTATG
1 TTATG
13213417 ATATCAAATA
Statistics
Matches: 158, Mismatches: 30, Indels: 22
0.75 0.14 0.10
Matches are distributed among these distances:
13 4 0.03
14 6 0.04
16 2 0.01
17 37 0.23
18 89 0.56
19 7 0.04
20 10 0.06
21 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:13213310 original size:114 final size:120
Alignment explanation
Indices: 13213176--13213447 Score: 351
Period size: 123 Copynumber: 2.3 Consensus size: 120
13213166 ACTAGTTATG
* *
13213176 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAA-TT-TATGA-TA-T-GATATAT-A
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATAT-ATTACTAGATATATAA
* * *
13213235 TTTATGTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
65 GTTATGTAAATTATATAAGTTATCTAAGTTATATAAGTTATATAAGTTATGTAAAT
*
13213290 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATA-TTA-CT-AGATATAT
** * *
13213355 AAGTTATGTAGGTTATATAAGTTATGTAAGTTATATATGTTATATAAGTTATGTAAAT
63 AAGTTATGTAAATTATATAAGTTATCTAAGTTATATAAGTTATATAAGTTATGTAAAT
* *
13213413 TATGATATCAAATATATTTATGTATTATGTAAGTT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTT
13213448 TTTTATTTCA
Statistics
Matches: 136, Mismatches: 12, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
114 39 0.29
115 3 0.02
116 3 0.02
117 2 0.01
119 1 0.01
121 6 0.04
122 14 0.10
123 68 0.50
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (120 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTACTAGATATATAAG
TTATGTAAATTATATAAGTTATCTAAGTTATATAAGTTATATAAGTTATGTAAAT
Found at i:13213541 original size:15 final size:15
Alignment explanation
Indices: 13213521--13213576 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
13213511 AAGTAGCGGG
13213521 ATTAAATAATATTTA
1 ATTAAATAATATTTA
13213536 ATTAAATAATATTT-
1 ATTAAATAATATTTA
13213550 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
13213565 ATTAAATAATAT
1 ATTAAATAATAT
13213577 ACATGTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:13213781 original size:24 final size:24
Alignment explanation
Indices: 13213753--13213820 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
13213743 ACTTAAATGG
13213753 TAAAACGGACGATAATATTTGTAA
1 TAAAACGGACGATAATATTTGTAA
*
13213777 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTAA
*
13213801 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
13213821 CAATAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.95
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTAA
Found at i:13214739 original size:372 final size:371
Alignment explanation
Indices: 13213908--13214817 Score: 1766
Period size: 372 Copynumber: 2.5 Consensus size: 371
13213898 AATTGAAACA
13213908 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
13213973 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
13214038 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
13214103 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
*
13214168 AATAATATCAAAAAGAACCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
261 AATAATATAAAAAAGAACCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
*
13214233 AAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTGTT
326 AAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
13214279 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
* *
13214344 CAGCTCGATATAAGGCAACCCGTCAAGTTTCCAGCCTATATACTTTGAATATTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
13214409 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
13214474 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATA
*
13214539 TAATAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
260 TAATAATATAAAAAAGAACCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
13214604 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
325 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
13214651 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
13214716 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
13214781 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATT
131 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATT
13214818 ATAATGGACA
Statistics
Matches: 531, Mismatches: 7, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
371 237 0.45
372 294 0.55
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (371 bp):
TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
AATAATATAAAAAAGAACCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
AAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
Found at i:13216743 original size:134 final size:134
Alignment explanation
Indices: 13216476--13216750 Score: 471
Period size: 134 Copynumber: 2.1 Consensus size: 134
13216466 GAATTCAACA
13216476 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
* **
13216541 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
66 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATAGAACAACAT
13216606 TATT
131 TATT
13216610 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
* * *
13216675 TAAGTTGGATAGAAACATG-AAAACAGACCAAAATAACATCTAAATAACCAAAATGGAATCACCA
66 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATAGAA-CAACA
13216739 TTATT
130 TTATT
*
13216744 ATGTAAA
1 ATATAAA
13216751 CATGAAAATG
Statistics
Matches: 133, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
133 36 0.27
134 97 0.73
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (134 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATAGAACAACAT
TATT
Found at i:13219489 original size:10 final size:11
Alignment explanation
Indices: 13219472--13219518 Score: 58
Period size: 12 Copynumber: 4.0 Consensus size: 11
13219462 CCACTTTCCA
13219472 TATATATATATT
1 TATATATAT-TT
13219484 TATATATATTT
1 TATATATATTT
*
13219495 TAAAATAATATTT
1 T-ATAT-ATATTT
13219508 TATATATATTT
1 TATATATATTT
13219519 ATCTTATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 9 0.29
12 15 0.48
13 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TATATATATTT
Found at i:13219527 original size:15 final size:15
Alignment explanation
Indices: 13219507--13219538 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13219497 AAATAATATT
*
13219507 TTATATATATTTATC
1 TTATATACATTTATC
13219522 TTATATACATTTATC
1 TTATATACATTTATC
13219537 TT
1 TT
13219539 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:13220420 original size:14 final size:14
Alignment explanation
Indices: 13220401--13220434 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
13220391 ATTGAACCTG
13220401 CTTAAACCATATAT-
1 CTTAAACCATA-ATC
13220415 CTTAAACCATAATC
1 CTTAAACCATAATC
13220429 CTTAAA
1 CTTAAA
13220435 ATATAATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 17 0.89
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (14 bp):
CTTAAACCATAATC
Found at i:13220653 original size:41 final size:41
Alignment explanation
Indices: 13220596--13220858 Score: 415
Period size: 41 Copynumber: 6.4 Consensus size: 41
13220586 GGGGTTATGG
*
13220596 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATACTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
*
13220637 GGTTTTTAGCGGCGTTTTACATAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
13220678 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
*
13220719 GGTTATTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
13220760 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
* * *
13220801 -GTTTTTAGCGGCGTTTTA-GTAAAAAACGCCGCGAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCT--AAAGCGCCGCTAATGCTCT
* *
13220842 -GTTTTTACCGGCTTTTT
1 GGTTTTTAGCGGCGTTTT
13220859 TTTTGGAACA
Statistics
Matches: 210, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 1 0.00
40 18 0.09
41 191 0.91
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.35
Consensus pattern (41 bp):
GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
Found at i:13226719 original size:33 final size:33
Alignment explanation
Indices: 13226674--13226748 Score: 125
Period size: 33 Copynumber: 2.3 Consensus size: 33
13226664 TTGATATTGT
13226674 ATTACT-CTTTTTTGTATATCATGCATTATTTA
1 ATTACTACTTTTTTGTATATCATGCATTATTTA
* *
13226706 ATTATTACTTTTTTGTATCTCATGCATTATTTA
1 ATTACTACTTTTTTGTATATCATGCATTATTTA
13226739 ATTACTACTT
1 ATTACTACTT
13226749 CGTATGTTTG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
32 5 0.13
33 34 0.87
ACGTcount: A:0.25, C:0.13, G:0.05, T:0.56
Consensus pattern (33 bp):
ATTACTACTTTTTTGTATATCATGCATTATTTA
Found at i:13234012 original size:26 final size:26
Alignment explanation
Indices: 13233983--13234064 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
13233973 TGATACAAAT
13233983 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
13234009 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
13234035 TGATAATGGGTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13234061 TGAT
1 TGAT
13234065 GGGAATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:13239136 original size:57 final size:58
Alignment explanation
Indices: 13239072--13239185 Score: 167
Period size: 57 Copynumber: 2.0 Consensus size: 58
13239062 TTTTCAAGTC
* * *
13239072 ATTTTCATTTTAGAGAAAACCATATTTATTTCCAAATGATTC-CATTTTTCCATTTTA
1 ATTTTCATTTTAGAGAAAACCATAATCATTTCCAAATGATTCTCATTTATCCATTTTA
* * *
13239129 ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAGTGTTTCTCATTTATCCATTTT
1 ATTTTCATTTTAGAGAAAACCATAATCATTTCCAAATGATTCTCATTTATCCATTTT
13239186 CAACATTTCT
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 37 0.74
58 13 0.26
ACGTcount: A:0.30, C:0.17, G:0.07, T:0.46
Consensus pattern (58 bp):
ATTTTCATTTTAGAGAAAACCATAATCATTTCCAAATGATTCTCATTTATCCATTTTA
Found at i:13242623 original size:14 final size:15
Alignment explanation
Indices: 13242594--13242626 Score: 50
Period size: 14 Copynumber: 2.2 Consensus size: 15
13242584 TTTAGGTTTG
13242594 AAATTTTTAATTAATT
1 AAATTTTT-ATTAATT
13242610 AAATTTTT-TTAATT
1 AAATTTTTATTAATT
13242624 AAA
1 AAA
13242627 AATCTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
16 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AAATTTTTATTAATT
Found at i:13242636 original size:18 final size:18
Alignment explanation
Indices: 13242596--13242636 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
13242586 TAGGTTTGAA
13242596 ATTTTTAATTAATTAAATT
1 ATTTTTAATTAA-TAAATT
13242615 -TTTTTAATTAA-AAATCT
1 ATTTTTAATTAATAAAT-T
13242632 ATTTT
1 ATTTT
13242637 CATCCCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
16 4 0.20
17 1 0.05
18 15 0.75
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTTAATTAATAAATT
Found at i:13248950 original size:18 final size:18
Alignment explanation
Indices: 13248927--13248963 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
13248917 AAAACCTTAG
13248927 CTGAATCTTCCTAAGGTC
1 CTGAATCTTCCTAAGGTC
13248945 CTGAATCTTCCTAAGGTC
1 CTGAATCTTCCTAAGGTC
13248963 C
1 C
13248964 CTAGCAGCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (18 bp):
CTGAATCTTCCTAAGGTC
Found at i:13257669 original size:19 final size:18
Alignment explanation
Indices: 13257643--13257694 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
13257633 ATTTATTAAG
13257643 ATAAATTTTTTAAATAAT
1 ATAAATTTTTTAAATAAT
** *
13257661 ATAAAATTTTAAAAATATT
1 AT-AAATTTTTTAAATAAT
*
13257680 ATAATTTTTTTAAAT
1 ATAAATTTTTTAAAT
13257695 GTTATATGTG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATAAATTTTTTAAATAAT
Found at i:13257694 original size:18 final size:18
Alignment explanation
Indices: 13257643--13257700 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
13257633 ATTTATTAAG
*
13257643 ATAAATTTTTTAAATAAT
1 ATAAATTTTTTAAATATT
**
13257661 ATAAAATTTTAAAAATATT
1 AT-AAATTTTTTAAATATT
* *
13257680 ATAATTTTTTTAAATGTT
1 ATAAATTTTTTAAATATT
13257698 ATA
1 ATA
13257701 TGTGTATCAA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
18 17 0.53
19 15 0.47
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
ATAAATTTTTTAAATATT
Found at i:13258866 original size:13 final size:14
Alignment explanation
Indices: 13258855--13258899 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 14
13258845 AATTTTATTC
13258855 TTTTTAACTATTTA
1 TTTTTAACTATTTA
*
13258869 TTTTTAAC--TCTA
1 TTTTTAACTATTTA
*
13258881 TTTTT-ACTTTTTA
1 TTTTTAACTATTTA
13258894 TTTTTA
1 TTTTTA
13258900 TTTTTATTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 2 0.08
12 8 0.31
13 8 0.31
14 8 0.31
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTTAACTATTTA
Found at i:13258903 original size:5 final size:6
Alignment explanation
Indices: 13258865--13258907 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
13258855 TTTTTAACTA
** *
13258865 TTTATT TTTAAC TCTATT TTTACTT TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTA-TT TTTATT TTTATT TTTATT
13258908 CTACTTTGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:13265839 original size:30 final size:30
Alignment explanation
Indices: 13265803--13265859 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
13265793 GTGGGCATTA
* * *
13265803 CACACGGGCTGGTCACATGCCCGTGTGAGC
1 CACACGGGCTGGCCACACGCCCATGTGAGC
13265833 CACACGGGCTGGCCACACGCCCATGTG
1 CACACGGGCTGGCCACACGCCCATGTG
13265860 CCAGCCCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.18, C:0.37, G:0.32, T:0.14
Consensus pattern (30 bp):
CACACGGGCTGGCCACACGCCCATGTGAGC
Found at i:13270913 original size:3 final size:3
Alignment explanation
Indices: 13270905--13270952 Score: 55
Period size: 3 Copynumber: 15.7 Consensus size: 3
13270895 TGTTGCTTGT
13270905 TTA TTA TTA TTA TTA TTA TTA GTTA TT- TTA TGT- TTA TTA TCTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA T-TA TTA TTA T-TA TTA
13270951 TT
1 TT
13270953 CTCTAGTCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
2 3 0.08
3 30 0.75
4 7 0.17
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:13279585 original size:14 final size:13
Alignment explanation
Indices: 13279553--13279609 Score: 53
Period size: 14 Copynumber: 4.2 Consensus size: 13
13279543 TTATATCATT
*
13279553 TACATTTCA-TTA
1 TACATTTTATTTA
*
13279565 TATATTTTGATTTA
1 TACATTTT-ATTTA
13279579 TACATTTTATTATA
1 TACATTTTATT-TA
13279593 TATCATTTTATTATA
1 TA-CATTTTATT-TA
13279608 TA
1 TA
13279610 TTATTGTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
12 6 0.16
13 4 0.11
14 14 0.37
15 14 0.37
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (13 bp):
TACATTTTATTTA
Found at i:13279601 original size:15 final size:15
Alignment explanation
Indices: 13279555--13279620 Score: 68
Period size: 15 Copynumber: 4.6 Consensus size: 15
13279545 ATATCATTTA
*
13279555 CATTTCATTATATAT
1 CATTTTATTATATAT
*
13279570 --TTTGATT-TATA-
1 CATTTTATTATATAT
13279581 CATTTTATTATATAT
1 CATTTTATTATATAT
13279596 CATTTTATTATATAT
1 CATTTTATTATATAT
*
13279611 TATTGTTATT
1 CATT-TTATT
13279621 TTATTACATA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
12 4 0.09
13 12 0.28
14 4 0.09
15 18 0.42
16 5 0.12
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (15 bp):
CATTTTATTATATAT
Found at i:13279606 original size:3 final size:3
Alignment explanation
Indices: 13279585--13279657 Score: 51
Period size: 3 Copynumber: 23.3 Consensus size: 3
13279575 TTTATACATT
* * *
13279585 TTA TTA TATA TCA TT- TTA TTA TATA TTA TTG TTA TT- TTA TTA CATA
1 TTA TTA T-TA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA -TTA
*
13279631 TTA TAA TTA TTCA TTA TTTA TTA TTA T
1 TTA TTA TTA TT-A TTA -TTA TTA TTA T
13279658 ATAATTTTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
2 4 0.07
3 37 0.67
4 14 0.25
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:13279640 original size:21 final size:21
Alignment explanation
Indices: 13279586--13279641 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
13279576 TTATACATTT
* *
13279586 TATTATATATCATTTTATTATA
1 TATTATA-ATTATTTTATTACA
**
13279608 TATTATTGTTATTTTATTACA
1 TATTATAATTATTTTATTACA
13279629 TATTATAATTATT
1 TATTATAATTATT
13279642 CATTATTTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 22 0.79
22 6 0.21
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (21 bp):
TATTATAATTATTTTATTACA
Found at i:13279659 original size:28 final size:28
Alignment explanation
Indices: 13279553--13279659 Score: 75
Period size: 26 Copynumber: 3.9 Consensus size: 28
13279543 TTATATCATT
*
13279553 TACATT-TCATTATATATT-TTGAT-TTA
1 TACATTATTATTATATATTATT-ATATTA
* *
13279579 TACATT-TTATTATATATCATTTTATTA
1 TACATTATTATTATATATTATTATATTA
* *
13279606 TATATTATTGTTAT-T-TTATTACATATTA
1 TACATTATTATTATATATTATT--ATATTA
*
13279634 TA-ATTATTCATTATTTATTATTATAT
1 TACATTATT-ATTATATATTATTATAT
13279660 AATTTTAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
26 21 0.32
27 17 0.26
28 21 0.32
29 1 0.02
30 5 0.08
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.60
Consensus pattern (28 bp):
TACATTATTATTATATATTATTATATTA
Found at i:13281108 original size:19 final size:19
Alignment explanation
Indices: 13281086--13281126 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
13281076 TGATAGATTT
*
13281086 AAAATATAATATATAATAAA
1 AAAATAT-ATATATAAGAAA
*
13281106 AAAATATATTTATAAGAAA
1 AAAATATATATATAAGAAA
13281125 AA
1 AA
13281127 TACTTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAATATATATATAAGAAA
Found at i:13281114 original size:17 final size:18
Alignment explanation
Indices: 13281094--13281152 Score: 50
Period size: 17 Copynumber: 3.2 Consensus size: 18
13281084 TTAAAATATA
13281094 ATATATAATAA-AAAAAT
1 ATATATAATAAGAAAAAT
*
13281111 ATAT-TTATAAGAAAAAT
1 ATATATAATAAGAAAAAT
* *
13281128 ACTTATATAAAAATATAAAAT
1 A--TATATAATAAGA-AAAAT
13281149 ATAT
1 ATAT
13281153 TGGTTTAGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 5 0.15
17 11 0.33
19 6 0.18
20 5 0.15
21 6 0.18
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (18 bp):
ATATATAATAAGAAAAAT
Found at i:13281516 original size:22 final size:22
Alignment explanation
Indices: 13281453--13281516 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 22
13281443 TAATATAAAA
13281453 TAAT-TATAATATAT-AAT-AT
1 TAATGTATAATATATAAATAAT
* * *
13281472 GAAAGTAT-ATATGTAAA-AA-
1 TAATGTATAATATATAAATAAT
13281491 TAATGTATAATATATAAATAAT
1 TAATGTATAATATATAAATAAT
13281513 TAAT
1 TAAT
13281517 AAAGATATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 9
0.69 0.12 0.19
Matches are distributed among these distances:
19 13 0.39
20 14 0.42
21 2 0.06
22 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (22 bp):
TAATGTATAATATATAAATAAT
Found at i:13281526 original size:19 final size:18
Alignment explanation
Indices: 13281502--13281550 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
13281492 AATGTATAAT
13281502 ATATAAATAATTAATAAAG
1 ATATAAATAATTAA-AAAG
* * *
13281521 ATATAATACAAGTAAAAAT
1 ATATAA-ATAATTAAAAAG
13281540 ATATAAATAAT
1 ATATAAATAAT
13281551 AATGTAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
18 3 0.12
19 15 0.62
20 6 0.25
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (18 bp):
ATATAAATAATTAAAAAG
Found at i:13281546 original size:38 final size:36
Alignment explanation
Indices: 13281499--13281598 Score: 105
Period size: 38 Copynumber: 2.6 Consensus size: 36
13281489 AATAATGTAT
13281499 AATATATAAATAATTAATAAAGAT-ATAATACAAGTAAA
1 AATATATAAATAA-TAATAAA-ATAATAATA-AAGTAAA
**
13281537 AATATATAAATAATAATGTAAAATAATAATAATTTAAA
1 AATATATAAATAATAA--TAAAATAATAATAAAGTAAA
13281575 AATATAT-AATAAATAATAATAATA
1 AATATATAAAT-AATAATAA-AATA
13281599 TGAAATAATA
Statistics
Matches: 55, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
36 3 0.05
37 10 0.18
38 32 0.58
39 10 0.18
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (36 bp):
AATATATAAATAATAATAAAATAATAATAAAGTAAA
Found at i:13281566 original size:16 final size:17
Alignment explanation
Indices: 13281545--13281586 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
13281535 AAAATATATA
13281545 AATAATAATGT-AAAAT
1 AATAATAATGTAAAAAT
*
13281561 AATAATAATTTAAAAAT
1 AATAATAATGTAAAAAT
13281578 ATATAATAA
1 A-ATAATAA
13281587 ATAATAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.43
17 6 0.26
18 7 0.30
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AATAATAATGTAAAAAT
Found at i:13281582 original size:57 final size:57
Alignment explanation
Indices: 13281480--13281608 Score: 149
Period size: 57 Copynumber: 2.2 Consensus size: 57
13281470 ATGAAAGTAT
* *
13281480 ATATGTAAA-AATAATGTATAATATATAAATAATTAATAAAGATATAATACAAGTAAAA
1 ATATATAAATAATAATGTAAAATATATAAATAATTAATAAAGATATAATA-AA-TAAAA
* *
13281538 ATATATAAATAATAATGTAAAATA-AT-AATAATTTAA-AAATATATAATAAATAATA
1 ATATATAAATAATAATGTAAAATATATAAATAA-TTAATAAAGATATAATAAATAAAA
13281593 ATAATATGAAATAATA
1 AT-ATAT-AAATAATA
13281609 TATGGTTAAT
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
55 6 0.10
56 6 0.10
57 24 0.38
58 14 0.22
59 13 0.21
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.33
Consensus pattern (57 bp):
ATATATAAATAATAATGTAAAATATATAAATAATTAATAAAGATATAATAAATAAAA
Found at i:13281606 original size:16 final size:15
Alignment explanation
Indices: 13281540--13281608 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 15
13281530 AAGTAAAAAT
13281540 ATATAAATAATAAT-
1 ATATAAATAATAATA
*
13281554 GTA-AAATAATAATA
1 ATATAAATAATAATA
*
13281568 ATTTAAA-AAT-AT-
1 ATATAAATAATAATA
13281580 ATAATAAATAATAATA
1 AT-ATAAATAATAATA
13281596 ATATGAAATAATA
1 ATAT-AAATAATA
13281609 TATGGTTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
12 2 0.05
13 16 0.36
14 9 0.20
15 7 0.16
16 10 0.23
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATAAATAATAATA
Found at i:13281734 original size:10 final size:10
Alignment explanation
Indices: 13281721--13281759 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
13281711 GATATTAAGT
13281721 AATATAATAA
1 AATATAATAA
*
13281731 AATATAATTA
1 AATATAATAA
13281741 AATA-ATATAA
1 AATATA-ATAA
13281751 AATATAATA
1 AATATAATA
13281760 CATATATTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 1 0.04
10 23 0.92
11 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AATATAATAA
Found at i:13294847 original size:44 final size:44
Alignment explanation
Indices: 13294778--13295271 Score: 727
Period size: 44 Copynumber: 11.2 Consensus size: 44
13294768 ATATATCACC
*
13294778 GATAGTAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* *
13294822 GATAACAGATTTGGCTTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
13294866 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* *
13294910 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * *
13294954 GATAACAGATTTGGCGTCTTTGTATTGATAGAGAGCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
13294998 TATAGCAGATTTGGCATCTCTGTATTGACAGAGAGTAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* *
13295042 GATAGCCGATTTGGCGTCTCTGTATTGACAGAGAGCAAATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * * *
13295086 GATAGCCGATTTGGCATCTTTTTATTGTCAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* *
13295130 GATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
13295174 GATAGCAGATTTAGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * *
13295218 GATAGCAGATTTGGCGTCTTTGTATTGACAAAGAGTAGATTGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
13295262 GATAGCAGAT
1 GATAGCAGAT
13295272 CTAACATTTG
Statistics
Matches: 409, Mismatches: 41, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 409 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (44 bp):
GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
Found at i:13296941 original size:14 final size:13
Alignment explanation
Indices: 13296909--13296965 Score: 53
Period size: 14 Copynumber: 4.2 Consensus size: 13
13296899 TTAAATCATT
*
13296909 TACATTTCA-TTA
1 TACATTTTATTTA
*
13296921 TATATTTTGATTTA
1 TACATTTT-ATTTA
13296935 TACATTTTATTATA
1 TACATTTTATT-TA
13296949 TATCATTTTATTATA
1 TA-CATTTTATT-TA
13296964 TA
1 TA
13296966 TTATTGTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
12 6 0.16
13 4 0.11
14 14 0.37
15 14 0.37
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (13 bp):
TACATTTTATTTA
Found at i:13296957 original size:15 final size:15
Alignment explanation
Indices: 13296911--13296976 Score: 68
Period size: 15 Copynumber: 4.6 Consensus size: 15
13296901 AAATCATTTA
*
13296911 CATTTCATTATATAT
1 CATTTTATTATATAT
*
13296926 --TTTGATT-TATA-
1 CATTTTATTATATAT
13296937 CATTTTATTATATAT
1 CATTTTATTATATAT
13296952 CATTTTATTATATAT
1 CATTTTATTATATAT
*
13296967 TATTGTTATT
1 CATT-TTATT
13296977 TTATTATATA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
12 4 0.09
13 12 0.28
14 4 0.09
15 18 0.42
16 5 0.12
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (15 bp):
CATTTTATTATATAT
Found at i:13296962 original size:3 final size:3
Alignment explanation
Indices: 13296941--13297013 Score: 60
Period size: 3 Copynumber: 23.3 Consensus size: 3
13296931 TTTATACATT
* *
13296941 TTA TTA TATA TCA TT- TTA TTA TATA TTA TTG TTA TT- TTA TTA TATA
1 TTA TTA T-TA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA
*
13296987 TTA TAA TTA TTCA TTA TTTA TTA TTA T
1 TTA TTA TTA TT-A TTA -TTA TTA TTA T
13297014 ATAATTTTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
2 4 0.07
3 38 0.67
4 15 0.26
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:13296996 original size:21 final size:21
Alignment explanation
Indices: 13296942--13297010 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
13296932 TTATACATTT
*
13296942 TATTATATATCATTTTATTATA
1 TATTATA-ATTATTTTATTATA
**
13296964 TATTATTGTTATTTTATTATA
1 TATTATAATTATTTTATTATA
* *
13296985 TATTATAATTA-TTCATTATT
1 TATTATAATTATTTTATTATA
13297005 TATTAT
1 TATTAT
13297011 TATATAATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 13 0.32
21 21 0.52
22 6 0.15
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (21 bp):
TATTATAATTATTTTATTATA
Found at i:13298063 original size:80 final size:80
Alignment explanation
Indices: 13297930--13298096 Score: 307
Period size: 80 Copynumber: 2.1 Consensus size: 80
13297920 TGTTTATATT
* * *
13297930 CTTTTGAAGTGAAGGATTCTTGATTTTTAACTCAAATTATTACGGTTTTAAAAGAGATCTTATTT
1 CTTTTGAAGCGAAGGATTCTTGATTTTTAACTCAAATTATTACGGTTTGAAAAGAGATATTATTT
13297995 CTAAATTCTTTTAAG
66 CTAAATTCTTTTAAG
13298010 CTTTTGAAGCGAAGGATTCTTGATTTTTAACTCAAATTATTACGGTTTGAAAAGAGATATTATTT
1 CTTTTGAAGCGAAGGATTCTTGATTTTTAACTCAAATTATTACGGTTTGAAAAGAGATATTATTT
13298075 CTAAATTCTTTTAAG
66 CTAAATTCTTTTAAG
13298090 CTTTTGA
1 CTTTTGA
13298097 CATTAAGACA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.44
Consensus pattern (80 bp):
CTTTTGAAGCGAAGGATTCTTGATTTTTAACTCAAATTATTACGGTTTGAAAAGAGATATTATTT
CTAAATTCTTTTAAG
Found at i:13306006 original size:21 final size:22
Alignment explanation
Indices: 13305977--13306028 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
13305967 TTTTAAATTT
13305977 TTTATAATATTATTTCTT-AAAC
1 TTTA-AATATTATTTCTTAAAAC
* *
13305999 TTTAAATA-TATTTTTTAAAAT
1 TTTAAATATTATTTCTTAAAAC
13306020 TTTAAATAT
1 TTTAAATAT
13306029 GTACTTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 7 0.27
21 15 0.58
22 4 0.15
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTAAATATTATTTCTTAAAAC
Found at i:13307153 original size:20 final size:19
Alignment explanation
Indices: 13307105--13307156 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
13307095 AAAATCAAAA
13307105 AAATTT-AT-AAAATATTT
1 AAATTTAATAAAAATATTT
*
13307122 AATTTTAATAAAAATATTT
1 AAATTTAATAAAAATATTT
*
13307141 AGAATTTATTAAAAAT
1 A-AATTTAATAAAAAT
13307157 TAGGATTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 5 0.17
18 2 0.07
19 10 0.34
20 12 0.41
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
AAATTTAATAAAAATATTT
Found at i:13320466 original size:31 final size:31
Alignment explanation
Indices: 13320431--13320504 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
13320421 AGGTAGGGCA
*
13320431 TGTGGGCCACACAGTCTGGCCTGTTGGGCCG
1 TGTGGGCCACACAATCTGGCCTGTTGGGCCG
*
13320462 TGTGGGCCACACAATCTGGCTTGTTGGGCCG
1 TGTGGGCCACACAATCTGGCCTGTTGGGCCG
*
13320493 TATGGGCCACAC
1 TGTGGGCCACAC
13320505 GGACATATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.14, C:0.28, G:0.35, T:0.23
Consensus pattern (31 bp):
TGTGGGCCACACAATCTGGCCTGTTGGGCCG
Found at i:13325734 original size:27 final size:27
Alignment explanation
Indices: 13325704--13325757 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
13325694 ATACAACTAT
13325704 TCACAAACACAATTAAATATAATCCAC
1 TCACAAACACAATTAAATATAATCCAC
13325731 TCACAAACACAATTAAATATAATCCAC
1 TCACAAACACAATTAAATATAATCCAC
13325758 ATTCATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.22
Consensus pattern (27 bp):
TCACAAACACAATTAAATATAATCCAC
Found at i:13337048 original size:6 final size:6
Alignment explanation
Indices: 13337003--13337046 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
13336993 ATTGAGTCCA
*
13337003 TTTA-T TTTATT TTTAGT TTTAGT TTTAGT TTTATGT TTATAGT T
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTA-GT TT-TAGT T
13337047 ATTTTCTTAG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
5 4 0.11
6 22 0.63
7 7 0.20
8 2 0.06
ACGTcount: A:0.18, C:0.00, G:0.11, T:0.70
Consensus pattern (6 bp):
TTTAGT
Found at i:13340858 original size:9 final size:9
Alignment explanation
Indices: 13340841--13340982 Score: 78
Period size: 9 Copynumber: 15.3 Consensus size: 9
13340831 ATTATAAACA
*
13340841 ATAATATAC
1 ATAACATAC
13340850 ATAACATAC
1 ATAACATAC
*
13340859 ATAATATAC
1 ATAACATAC
13340868 AT-ACATAAAC
1 ATAACAT--AC
* *
13340878 AATAATAAAC
1 -ATAACATAC
13340888 ATAACATAC
1 ATAACATAC
*
13340897 ATAAAATAC
1 ATAACATAC
13340906 ATAAACAGTA-
1 AT-AACA-TAC
13340916 ATATAC-TAC
1 ATA-ACATAC
13340925 ATAACATA-
1 ATAACATAC
* *
13340933 GTAATATAC
1 ATAACATAC
*
13340942 A-GACATAAAC
1 ATAACAT--AC
*
13340952 AATAATATAC
1 -ATAACATAC
13340962 ATAACATAC
1 ATAACATAC
*
13340971 ATAATATAC
1 ATAACATAC
13340980 ATA
1 ATA
13340983 TATAACAGAT
Statistics
Matches: 101, Mismatches: 18, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
8 16 0.16
9 60 0.59
10 15 0.15
11 5 0.05
12 5 0.05
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (9 bp):
ATAACATAC
Found at i:13340876 original size:38 final size:38
Alignment explanation
Indices: 13340804--13340987 Score: 202
Period size: 38 Copynumber: 4.9 Consensus size: 38
13340794 ATATAAATTG
* * *
13340804 TAATATACAT-ACAT-GATAAACATACATATTATAAACAA
1 TAATATACATAACATACAT-AATATACATA-CATAAACAA
13340842 TAATATACATAACATACATAATATACATACATAAACAA
1 TAATATACATAACATACATAATATACATACATAAACAA
* *
13340880 TAATAAACATAACATACAT-A-A-A-ATACATAAACAG
1 TAATATACATAACATACATAATATACATACATAAACAA
* *
13340914 TAATATACTACATAACATA-GTAATATACAGACATAAACAA
1 T-A-ATA-TACATAACATACATAATATACATACATAAACAA
*
13340954 TAATATACATAACATACATAATATACATATATAA
1 TAATATACATAACATACATAATATACATACATAA
13340988 CAGATATACT
Statistics
Matches: 124, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
34 12 0.10
35 2 0.02
36 5 0.04
37 23 0.19
38 54 0.44
39 15 0.12
40 13 0.10
ACGTcount: A:0.57, C:0.14, G:0.02, T:0.27
Consensus pattern (38 bp):
TAATATACATAACATACATAATATACATACATAAACAA
Found at i:13348284 original size:16 final size:16
Alignment explanation
Indices: 13348260--13348292 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
13348250 TTCAAATTCC
*
13348260 TTAGTCATAGCTTTCT
1 TTAGCCATAGCTTTCT
13348276 TTAGCCATAGCTTTCT
1 TTAGCCATAGCTTTCT
13348292 T
1 T
13348293 AAAGTCATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.12, T:0.48
Consensus pattern (16 bp):
TTAGCCATAGCTTTCT
Found at i:13364304 original size:23 final size:22
Alignment explanation
Indices: 13364275--13364336 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
13364265 ATCAGAATCT
13364275 AAAATTAAGAAAAGAAAAAGGA
1 AAAATTAAGAAAAGAAAAAGGA
* *
13364297 AAATATTAA-ATAAGGAAAATGGA
1 AAA-ATTAAGA-AAAGAAAAAGGA
*
13364320 AAAA-GAAGAAAAGAAAA
1 AAAATTAAGAAAAGAAAA
13364337 GGGGTACCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
21 9 0.27
22 6 0.18
23 18 0.55
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.11
Consensus pattern (22 bp):
AAAATTAAGAAAAGAAAAAGGA
Found at i:13366542 original size:6 final size:6
Alignment explanation
Indices: 13366531--13366557 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
13366521 CCGCGTATCC
13366531 GTCCGA GTCCGA GTCCGA GTCCGA GTC
1 GTCCGA GTCCGA GTCCGA GTCCGA GTC
13366558 ATTTAATAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.19
Consensus pattern (6 bp):
GTCCGA
Found at i:13367640 original size:19 final size:19
Alignment explanation
Indices: 13367616--13367713 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
13367606 AATCTTTAAG
13367616 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13367635 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13367654 GATA--CAATCTTAGATTT
1 GATATGCAATCTTAGATAT
13367671 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13367690 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
13367711 GAT
1 GAT
13367714 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13367646 original size:36 final size:35
Alignment explanation
Indices: 13367606--13367713 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
13367596 ATGGAAATAT
13367606 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
*
13367642 AATC-TT-AGATATGATACAATCTTAGATTTGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
13367678 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
13367714 CTTGTAATCT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.46
37 1 0.02
38 7 0.12
40 9 0.15
41 6 0.10
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:13370831 original size:2 final size:2
Alignment explanation
Indices: 13370824--13370856 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
13370814 GTTATTAAAA
13370824 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
13370857 GGTCACGGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:13374235 original size:44 final size:44
Alignment explanation
Indices: 13374093--13374497 Score: 326
Period size: 44 Copynumber: 9.2 Consensus size: 44
13374083 CAAAGAAACA
* *
13374093 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * * * **
13374137 AGATCTGACA-CTCTTGTGCTTACAGCGAAGC-AGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGC
*
13374182 AG--CATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * *
13374225 AGATTTGGCATCCTTGTGTTTATAGGGAACAAATTGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * * * **
13374269 AGATCTGACATTCCTGTGCTTACAGCGAAGC-AGATCGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGC
*
13374314 AG--CATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * *
13374357 AGATTTGGTATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
*** * * * * * **
13374401 AGATCTAATATTCCTATGCTTACAGCGAAGC-AGATCGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGC
*
13374446 AG--CATGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
13374489 AGATCTGGC
1 AGATCTGGC
13374498 CTTCATATGT
Statistics
Matches: 276, Mismatches: 65, Indels: 40
0.72 0.17 0.10
Matches are distributed among these distances:
43 38 0.14
44 201 0.73
45 37 0.13
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
Found at i:13374330 original size:132 final size:132
Alignment explanation
Indices: 13374093--13374497 Score: 711
Period size: 132 Copynumber: 3.1 Consensus size: 132
13374083 CAAAGAAACA
* *
13374093 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCTTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
13374158 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
13374223 GC
131 GC
* *
13374225 AGATTTGGCATCCTTGTGTTTATAGGGAACAAATTGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
13374290 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
13374355 GC
131 GC
* * * *
13374357 AGATTTGGTATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAATATTCCTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
* *
13374422 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
13374487 GC
131 GC
*
13374489 AGATCTGGC
1 AGATTTGGC
13374498 CTTCATATGT
Statistics
Matches: 259, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 259 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:13374838 original size:206 final size:206
Alignment explanation
Indices: 13374484--13375273 Score: 1294
Period size: 206 Copynumber: 3.8 Consensus size: 206
13374474 CAAATCGAAG
** * *
13374484 ATAGCAGATCTGGCCTTCATATGTTTATACTGAAGCCGATCCAA-AGTGATTTGGCATCCTTGTG
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGA-TGATTTGGCATCCTTGTG
* *
13374548 CTTACAAGGAACAAATCGAAGACATAGTTGATTTGGCTTTCACGTGCTTACGATGAAACAAATCT
65 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCT
* *
13374613 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGATG
130 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACG
*
13374678 GAGAGTAGACAC
195 GAGAGCAGACAC
** * * * *
13374690 ATAGCAGATCTGGCCTTTATATGTTTATACTGAAGTAGATCCAAGGTGATTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGC
13374755 TTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTA
66 TTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTA
*
13374820 AGATGATTTGGCATCTCTGTATTGTTAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGG
131 AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGG
13374885 AGAGCAGACAC
196 AGAGCAGACAC
*
13374896 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGC
13374961 TTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTA
66 TTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTA
*
13375026 AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTGTCCATATTCGACGG
131 AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGG
*
13375091 AGGGCAGACAC
196 AGAGCAGACAC
* * * *
13375102 ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGC
* * * **
13375167 TTACAAGGAGCAAATCGAAGACATAGTTGATTTGGTTTTTGCGTGCTTACGATGAAGCAAATCTA
66 TTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTA
* *
13375232 AGATGATTTGGCATCTCTGTATTGTCAGAAAACAGATCGAAG
131 AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
13375274 ATAACAGATT
Statistics
Matches: 551, Mismatches: 32, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
206 551 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGC
TTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTA
AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGG
AGAGCAGACAC
Found at i:13375685 original size:19 final size:19
Alignment explanation
Indices: 13375661--13375758 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
13375651 AATCTTTAAG
13375661 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13375680 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13375699 GATA--CAATCTTAGATTT
1 GATATGCAATCTTAGATAT
13375716 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13375735 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
13375756 GAT
1 GAT
13375759 CCTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13375691 original size:36 final size:35
Alignment explanation
Indices: 13375651--13375758 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
13375641 ATGGAAATAT
13375651 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
*
13375687 AATC-TT-AGATATGATACAATCTTAGATTTGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
13375723 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
13375759 CCTGTAATCT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.46
37 1 0.02
38 7 0.12
40 9 0.15
41 6 0.10
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:13378302 original size:21 final size:21
Alignment explanation
Indices: 13378250--13378292 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
13378240 CATTAATTGA
13378250 TATAATAATACATGATTATAT
1 TATAATAATACATGATTATAT
13378271 TATAATAATACATGATTATAT
1 TATAATAATACATGATTATAT
13378292 T
1 T
13378293 TTTTTAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (21 bp):
TATAATAATACATGATTATAT
Found at i:13379685 original size:28 final size:28
Alignment explanation
Indices: 13379645--13379705 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
13379635 ACTACAACCA
13379645 ATGAATTATACCTTGATTAATTAAGAAG
1 ATGAATTATACCTTGATTAATTAAGAAG
13379673 ATGAATTATACCTTGATTAATTAAGAAG
1 ATGAATTATACCTTGATTAATTAAGAAG
13379701 A-GAAT
1 ATGAAT
13379706 ACAGATAAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 4 0.12
28 29 0.88
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (28 bp):
ATGAATTATACCTTGATTAATTAAGAAG
Found at i:13381016 original size:3 final size:3
Alignment explanation
Indices: 13381008--13381059 Score: 77
Period size: 3 Copynumber: 17.3 Consensus size: 3
13380998 ATATTATGTC
* * *
13381008 TAA TAA TAA TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA TAG CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13381056 TAA T
1 TAA T
13381060 GTAAATATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:13383162 original size:29 final size:30
Alignment explanation
Indices: 13383120--13383176 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
13383110 ATATAAATTA
*
13383120 TGTAATTGTGTATATG-AACTTTGATTTTG
1 TGTAATTGTATATATGAAACTTTGATTTTG
* *
13383149 TGTAATTTTATATATGAAATTTTGATTT
1 TGTAATTGTATATATGAAACTTTGATTT
13383177 CATATCATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.28, C:0.02, G:0.16, T:0.54
Consensus pattern (30 bp):
TGTAATTGTATATATGAAACTTTGATTTTG
Found at i:13384202 original size:18 final size:18
Alignment explanation
Indices: 13384176--13384227 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
13384166 ATTTATTTTA
*
13384176 TTATTATTTTTATCATAT
1 TTATAATTTTTATCATAT
* *
13384194 TTATAATTTTAATCTTAT
1 TTATAATTTTTATCATAT
13384212 TACTATAATATTTTAT
1 T--TATAAT-TTTTAT
13384228 ATTATTTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 16 0.59
20 6 0.22
21 5 0.19
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATAATTTTTATCATAT
Found at i:13384759 original size:13 final size:13
Alignment explanation
Indices: 13384711--13384756 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
13384701 ATTTTTTTAT
13384711 AATTAAATT-TTA
1 AATTAAATTATTA
*
13384723 AATTAAAGCTATTA
1 AATTAAA-TTATTA
13384737 AATTAAATTATTA
1 AATTAAATTATTA
13384750 AACTTAA
1 AA-TTAA
13384757 TTAATAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 7 0.24
13 8 0.28
14 14 0.48
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.41
Consensus pattern (13 bp):
AATTAAATTATTA
Found at i:13394164 original size:4 final size:4
Alignment explanation
Indices: 13394155--13394220 Score: 50
Period size: 4 Copynumber: 16.8 Consensus size: 4
13394145 AATCCCTATT
* *
13394155 TTTA TTTA TTTA TTTA TTTA TTT- TCTGGA TTTA TATA -TT- TTTA TTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-T-TA TTTA TTTA TTTA TTTA -TTTA
*
13394203 TTTA TTTA TCT- TTTA TTT
1 TTTA TTTA TTTA TTTA TTT
13394221 TCTGAATTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
3 6 0.12
4 37 0.76
5 5 0.10
6 1 0.02
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:13394237 original size:22 final size:22
Alignment explanation
Indices: 13394171--13394243 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 22
13394161 TATTTATTTA
* *
13394171 TTTATTTTCTGGATTTATATATT
1 TTTATTTTCTGAATTTATAT-CT
* **
13394194 TTTATTTTATTTA-TT-TATCT
1 TTTATTTTCTGAATTTATATCT
13394214 TTTATTTTCTGAATTTATATCT
1 TTTATTTTCTGAATTTATATCT
13394236 TTTATTTT
1 TTTATTTT
13394244 ATTTTATTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
20 11 0.27
21 5 0.12
22 15 0.37
23 10 0.24
ACGTcount: A:0.21, C:0.05, G:0.04, T:0.70
Consensus pattern (22 bp):
TTTATTTTCTGAATTTATATCT
Found at i:13394251 original size:43 final size:44
Alignment explanation
Indices: 13394154--13394247 Score: 147
Period size: 43 Copynumber: 2.2 Consensus size: 44
13394144 CAATCCCTAT
* * *
13394154 TTTTATTTATTTATTTATTTATTTTCTGGATTTATATATTTTTA
1 TTTTATTTATTTATCTATTTATTTTCTGAATTTATATACTTTTA
13394198 TTTTATTTATTTATCT-TTTATTTTCTGAATTTATAT-CTTTTA
1 TTTTATTTATTTATCTATTTATTTTCTGAATTTATATACTTTTA
13394240 TTTTATTT
1 TTTTATTT
13394248 TATTATGTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 13 0.28
43 19 0.40
44 15 0.32
ACGTcount: A:0.21, C:0.04, G:0.03, T:0.71
Consensus pattern (44 bp):
TTTTATTTATTTATCTATTTATTTTCTGAATTTATATACTTTTA
Found at i:13397308 original size:27 final size:27
Alignment explanation
Indices: 13397270--13397324 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
13397260 AATTTCTACG
13397270 GATCAAGATACTAAGTGAAGAAATTGT
1 GATCAAGATACTAAGTGAAGAAATTGT
13397297 GATCAAGATACTAAGTGAAGAAATTGT
1 GATCAAGATACTAAGTGAAGAAATTGT
13397324 G
1 G
13397325 TAATTTAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.07, G:0.24, T:0.25
Consensus pattern (27 bp):
GATCAAGATACTAAGTGAAGAAATTGT
Found at i:13397976 original size:16 final size:16
Alignment explanation
Indices: 13397955--13397988 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
13397945 ATGTATTATG
13397955 AAATAAAGATA-AAAGA
1 AAATAAAGA-ACAAAGA
13397971 AAATAAAGAACAAAGA
1 AAATAAAGAACAAAGA
13397987 AA
1 AA
13397989 TAGAGAGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 16 0.94
ACGTcount: A:0.76, C:0.03, G:0.12, T:0.09
Consensus pattern (16 bp):
AAATAAAGAACAAAGA
Found at i:13400337 original size:35 final size:35
Alignment explanation
Indices: 13400291--13400362 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
13400281 GGTATGCCTT
13400291 ATGTTAAAACTTTTTTAACTACCAAAGAGGAGGAA
1 ATGTTAAAACTTTTTTAACTACCAAAGAGGAGGAA
13400326 ATGTTAAAACTTTTTTAACTACCAAAGAGGAGGAA
1 ATGTTAAAACTTTTTTAACTACCAAAGAGGAGGAA
13400361 AT
1 AT
13400363 ATTTGTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (35 bp):
ATGTTAAAACTTTTTTAACTACCAAAGAGGAGGAA
Found at i:13405252 original size:50 final size:50
Alignment explanation
Indices: 13405171--13405280 Score: 143
Period size: 50 Copynumber: 2.2 Consensus size: 50
13405161 ATAAGAGTAC
* *
13405171 CGGTAGAAGTGTAGAGGATGTTAAACCTTGGCTACTAACTTGACTTATTT
1 CGGTAGAAGTATAGAGGATGCTAAACCTTGGCTACTAACTTGACTTATTT
* * *
13405221 CGGTAGAAGTATAG-GAGATGCTGAACTTTGGCTACTAACTTGACTTGTTT
1 CGGTAGAAGTATAGAG-GATGCTAAACCTTGGCTACTAACTTGACTTATTT
13405271 CAGG-AGAAGT
1 C-GGTAGAAGT
13405281 CCTTAAAGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
49 1 0.02
50 50 0.94
51 2 0.04
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (50 bp):
CGGTAGAAGTATAGAGGATGCTAAACCTTGGCTACTAACTTGACTTATTT
Found at i:13412958 original size:5 final size:5
Alignment explanation
Indices: 13412948--13412977 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
13412938 TTAAAACCCG
13412948 GGCCC GGCCC GGCCC GGCCC GGCCC -GCCC G
1 GGCCC GGCCC GGCCC GGCCC GGCCC GGCCC G
13412978 TATTAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.00, C:0.60, G:0.40, T:0.00
Consensus pattern (5 bp):
GGCCC
Found at i:13414362 original size:32 final size:32
Alignment explanation
Indices: 13414289--13414362 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
13414279 TGAGCCACAC
* *
13414289 GACCGTGTGTATCGATCGTGTGGAATCACTCA
1 GACCGTGTGTATAGATCATGTGGAATCACTCA
* * *
13414321 GACTGTGTGTATAGGTCATGTGGAATCACTTA
1 GACCGTGTGTATAGATCATGTGGAATCACTCA
*
13414353 GACCATGTGT
1 GACCGTGTGT
13414363 GATAAAAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (32 bp):
GACCGTGTGTATAGATCATGTGGAATCACTCA
Found at i:13414586 original size:23 final size:22
Alignment explanation
Indices: 13414559--13414612 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
13414549 TGGATAACCT
13414559 TTTTTTAAAAAATATTTTTTCAA
1 TTTTTTAAAAAA-ATTTTTTCAA
*** *
13414582 TTTTTCTTTCAAAATTTTTTGAA
1 TTTTT-TAAAAAAATTTTTTCAA
13414605 TTTTTTAA
1 TTTTTTAA
13414613 GTAGTAATAA
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
22 1 0.04
23 19 0.79
24 4 0.17
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTTTAAAAAAATTTTTTCAA
Found at i:13415216 original size:26 final size:26
Alignment explanation
Indices: 13415187--13415238 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13415177 ATTACTAACA
13415187 TTAACAGAATAATGAGTATCATCTCG
1 TTAACAGAATAATGAGTATCATCTCG
13415213 TTAACAGAATAATGAGTATCATCTCG
1 TTAACAGAATAATGAGTATCATCTCG
13415239 CTTCTTTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (26 bp):
TTAACAGAATAATGAGTATCATCTCG
Found at i:13417518 original size:21 final size:21
Alignment explanation
Indices: 13417471--13417521 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
13417461 AATGTAAAAA
13417471 TTAAATTAAAAACAAAAATAT
1 TTAAATTAAAAACAAAAATAT
*
13417492 TAAAATTAAAATTA-AAAAAT-T
1 TTAAATTAAAA--ACAAAAATAT
13417513 TTAAATTAA
1 TTAAATTAA
13417522 TAGAAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 19 0.73
22 6 0.23
23 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
TTAAATTAAAAACAAAAATAT
Found at i:13420102 original size:26 final size:26
Alignment explanation
Indices: 13420059--13420119 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
13420049 TATCCAGAGC
* * *
13420059 TCCTAATTAAAGGCTCTTCGTAAGCT
1 TCCTGATTAAAAGCTCTTCGTAAACT
* *
13420085 TCCTGATTAAAAGTTCTTTGTAAACT
1 TCCTGATTAAAAGCTCTTCGTAAACT
*
13420111 TCTTGATTA
1 TCCTGATTA
13420120 TGACTCTTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (26 bp):
TCCTGATTAAAAGCTCTTCGTAAACT
Found at i:13420224 original size:26 final size:26
Alignment explanation
Indices: 13420168--13420224 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
13420158 CTTCTTGATA
*
13420168 GGCTCTTTGTGAGCTTCCCGATTAAT
1 GGCTCTTTGTGAACTTCCCGATTAAT
* *
13420194 AGCTCTTTGTGAACTT-CCTATTATAT
1 GGCTCTTTGTGAACTTCCCGATTA-AT
13420220 GGCTC
1 GGCTC
13420225 GAGAGAGGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (26 bp):
GGCTCTTTGTGAACTTCCCGATTAAT
Found at i:13421207 original size:19 final size:19
Alignment explanation
Indices: 13421183--13421280 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
13421173 AATCTTTAAG
13421183 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13421202 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13421221 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13421238 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13421257 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
13421278 GAT
1 GAT
13421281 CTTGTAATCT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
21 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13421213 original size:36 final size:35
Alignment explanation
Indices: 13421173--13421280 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
13421163 ATGGAAATAT
*
13421173 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATAC
13421209 AATC-TT-AGATATGATACAATCTTAGATATGATATAC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATAC
*
13421245 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
13421281 CTTGTAATCT
Statistics
Matches: 60, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.45
37 1 0.02
38 7 0.12
40 10 0.17
41 6 0.10
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATAC
Found at i:13423909 original size:2 final size:2
Alignment explanation
Indices: 13423902--13423934 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
13423892 AGAAAGAAAA
*
13423902 AG AG AG AG GG AG AG AG AG AG AG AG AG AG A- AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
13423935 GGTCACGGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
AG
Found at i:13424095 original size:2 final size:2
Alignment explanation
Indices: 13424078--13424120 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
13424068 GTTATCAAAA
* *
13424078 AG AG AA AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
13424119 AG
1 AG
13424121 GGTCACGGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (2 bp):
AG
Found at i:13424189 original size:186 final size:187
Alignment explanation
Indices: 13423825--13424195 Score: 708
Period size: 186 Copynumber: 2.0 Consensus size: 187
13423815 GCATCTAATA
13423825 GCATCTCATCGCATCATTTGCATTCAAAATTATAAAAAGACTCTAATTAGTTAAAGTTATCAAAA
1 GCATCTCATCGCATCATTTGCATTCAAAATTATAAAAAGACTCTAATTAGTTAAAGTTATCAAAA
*
13423890 AGAGAAAGAAAAAGAGAGAGGGAGAGAGAGAGAGAGAGAGAAGAGGGTCACGGCTGAGTGAAAAA
66 AGAGAAAG-AAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGGTCACGGCTGAGTGAAAAA
13423955 GAAGTTGAATGGGAATTAACGACGTTCCCTTACACATCCCCGACTTTTGTGTCAGGTC
130 GAAGTTGAATGGGAATTAACGACGTTCCCTTACACATCCCCGACTTTTGTGTCAGGTC
13424013 GCATCTCATCGCATCATTTGCATTCAAAATTATAAAAAGACTCTAATTAGTTAAAGTTATCAAAA
1 GCATCTCATCGCATCATTTGCATTCAAAATTATAAAAAGACTCTAATTAGTTAAAGTTATCAAAA
13424078 AGAGAAAG-AAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGGTCACGGCTGAGTGAAAAAG
66 AGAGAAAGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGGTCACGGCTGAGTGAAAAAG
*
13424142 AAGTTGAATGGGAATTAACGACGTTCCCTTACATATCCCCGACTTTTGTGTCAG
131 AAGTTGAATGGGAATTAACGACGTTCCCTTACACATCCCCGACTTTTGTGTCAG
13424196 AAGGGATAGC
Statistics
Matches: 181, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
186 108 0.60
188 73 0.40
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (187 bp):
GCATCTCATCGCATCATTTGCATTCAAAATTATAAAAAGACTCTAATTAGTTAAAGTTATCAAAA
AGAGAAAGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGGTCACGGCTGAGTGAAAAAG
AAGTTGAATGGGAATTAACGACGTTCCCTTACACATCCCCGACTTTTGTGTCAGGTC
Found at i:13426657 original size:7 final size:7
Alignment explanation
Indices: 13426645--13426686 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
13426635 CTATTTCAAA
13426645 AAAAAAG
1 AAAAAAG
13426652 AAAAAA-
1 AAAAAAG
*
13426658 ATAAAAAA
1 A-AAAAAG
13426666 AAAAAGAG
1 AAAAA-AG
13426674 AAAAAAG
1 AAAAAAG
13426681 AAAAAA
1 AAAAAA
13426687 ATGGAGAGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
6 1 0.03
7 23 0.74
8 7 0.23
ACGTcount: A:0.88, C:0.00, G:0.10, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:13426667 original size:20 final size:21
Alignment explanation
Indices: 13426642--13426687 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
13426632 CTTCTATTTC
*
13426642 AAAAAAAAAGA-AAAAAATAA
1 AAAAAAAAAGAGAAAAAAGAA
13426662 AAAAAAAAAGAGAAAAAAGAA
1 AAAAAAAAAGAGAAAAAAGAA
13426683 AAAAA
1 AAAAA
13426688 TGGAGAGGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.89, C:0.00, G:0.09, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAGAGAAAAAAGAA
Found at i:13426670 original size:22 final size:21
Alignment explanation
Indices: 13426642--13426687 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 21
13426632 CTTCTATTTC
13426642 AAAAAAAAAGAAAAAA-ATAAA
1 AAAAAAAAAGAAAAAAGA-AAA
13426663 AAAAAAAAGAGAAAAAAGAAAA
1 AAAAAAAA-AGAAAAAAGAAAA
13426685 AAA
1 AAA
13426688 TGGAGAGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.35
22 14 0.61
23 1 0.04
ACGTcount: A:0.89, C:0.00, G:0.09, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAGAAAAAAGAAAA
Found at i:13426693 original size:19 final size:16
Alignment explanation
Indices: 13426642--13426687 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
13426632 CTTCTATTTC
13426642 AAAAAAAAAGAAAA-A-
1 AAAAAAAAA-AAAAGAG
13426657 AATAAAAAAAAAAAGAG
1 AA-AAAAAAAAAAAGAG
13426674 AAAAAAGAAAAAAA
1 AAAAAA-AAAAAAA
13426688 TGGAGAGGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 6 0.22
16 12 0.44
17 9 0.33
ACGTcount: A:0.89, C:0.00, G:0.09, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAAAAAGAG
Found at i:13427700 original size:44 final size:43
Alignment explanation
Indices: 13427643--13428409 Score: 375
Period size: 44 Copynumber: 17.5 Consensus size: 43
13427633 GATCCAAGAT
* *
13427643 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGATA-CA
* *
13427687 GATTTGGCATCTCTATATTGGCAGGGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAG--ATA-CA
* * * * * *
13427733 GATTTGGCTTTCACGTGT-TT-AC-GTTGAAGCAAATCTAAGAT---
1 GATTTGGC-ATCTC-TGTATTGGCAG--GGAGCAGATCGAAGATACA
* * * *
13427774 GATTTAGCGTCTCTGTATTGGCAGAGAGCATATCGAAGATGACTA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGAT-AC-A
*
13427819 -ATTTGGCATCTCTGTATTCGGC-GGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGG-GAGCAGATCGAAG--ATA-CA
* * * * * *
13427865 GATTTGGC-TTTCATGTGTT--TATGTTGAAGCAAATCTAAGAT---
1 GATTTGGCATCTC-TGTATTGGCA-G--GGAGCAGATCGAAGATACA
* * * *
13427906 GATTTGGCATCTTTGTATTGGTAGAGAGCAGATCAAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGAT-ACA
* *
13427950 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGAT-ACA
* * * *
13427994 GATTTAGCATCTCTGTATTCAGC-GGAGAGCAGATCAAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGG-GAGCAGATCGAAG--ATA-CA
* * ** * * *
13428041 GATTTGGC-TTTCATGTGTTTAC-GTTGAAACA-AGTCTAAGAT---
1 GATTTGGCATCTC-TGTATTGGCAG--GGAGCAGA-TCGAAGATACA
*
13428082 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGATA-CA
* * *
13428126 GATTTGGCATCTCTGTATTGGCAGAGAGCATATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGAT-ACA
* * *
13428170 GATTTGGCATCTTTGTATTTTGC-GGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTA-TTGGCAGG-GAGCAGATCGAAG--ATA-CA
* * * ** * *
13428217 GATTTGGCTTCCACGTGT-TTATG-TTGAAGCA-AGTCTAAGAT---
1 GATTTGGCAT-CTC-TGTATT-GGCAGGGAGCAGA-TCGAAGATACA
*
13428258 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGAT-ACA
* * * *
13428302 GATTTGACATCTCTATATTGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGAT-ACA
* * * *
13428346 GATTTGGCGTCTCTGTATTGGCAGAGCGCAGATCGAAGATAGAA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGATA-CA
* *
13428390 GATTTGGCGTCTTTGTATTG
1 GATTTGGCATCTCTGTATTG
13428410 TCAAAGAGCA
Statistics
Matches: 564, Mismatches: 92, Indels: 134
0.71 0.12 0.17
Matches are distributed among these distances:
39 7 0.01
40 54 0.10
41 46 0.08
42 8 0.01
43 3 0.01
44 266 0.47
45 55 0.10
46 27 0.05
47 87 0.15
48 8 0.01
49 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGATACA
Found at i:13427896 original size:132 final size:130
Alignment explanation
Indices: 13427638--13427988 Score: 517
Period size: 132 Copynumber: 2.7 Consensus size: 130
13427628 AAGTAGATCC
* * *
13427638 AAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCATCTCTAT
1 AAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CAGATTTGGCATCTCTGT
13427703 ATTGGCAGG-GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAAT
65 ATTGGC-GGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAAT
13427767 CT
129 CT
* *
13427769 AAGATGATTTAGCGTCTCTGTATTGGCAGAGAGCATATCGAAGATGACTA-ATTTGGCATCTCTG
1 AAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGAT-AC-AGATTTGGCATCTCTG
* *
13427833 TATTCGGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTATGTTGAAGCAAA
64 TATT-GGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAA
13427898 TCT
128 TCT
* * * *
13427901 AAGATGATTTGGCATCTTTGTATTGGTAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGT
1 AAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACAGATTTGGCATCTCTGT
* *
13427966 ATTGGCAGAGAGCAGATCAAAGA
65 ATTGGCGGAGAGCAGATCGAAGA
13427989 TGACAGATTT
Statistics
Matches: 199, Mismatches: 16, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
131 80 0.40
132 119 0.60
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (130 bp):
AAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATACAGATTTGGCATCTCTGTA
TTGGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
Found at i:13427965 original size:176 final size:176
Alignment explanation
Indices: 13427774--13428384 Score: 947
Period size: 176 Copynumber: 3.5 Consensus size: 176
13427764 AATCTAAGAT
* * * *
13427774 GATTTAGCGTCTCTGTATTGGCAGAGAGCATATCGAAGATGACTA-ATTTGGCATCTCTGTATTC
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGAC-AGATTTGGCATCTCTGTATTC
*
13427838 GGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTATGTTGAAGCAAATCTAA
65 GGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTATGTTGAAGCAAGTCTAA
* * *
13427903 GATGATTTGGCATCTTTGTATTGGTAGAGAGCAGATCAAAGATAACA
130 GATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* *
13427950 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTAGCATCTCTGTATTCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* * *
13428015 GCGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAACAAGTCTAAG
66 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTATGTTGAAGCAAGTCTAAG
*
13428080 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
131 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * **
13428126 GATTTGGCATCTCTGTATTGGCAGAGAGCATATCAAAGATGACAGATTTGGCATCTTTGTATTTT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* *
13428191 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTATGTTGAAGCAAGTCTAAG
66 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTATGTTGAAGCAAGTCTAAG
13428256 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
131 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * * * * *
13428302 GATTTGACATCTCTATATTGGCAGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTATT-G
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* *
13428366 GCAGAGCGCAGATCGAAGA
66 GCGGAGAGCAGATCGAAGA
13428385 TAGAAGATTT
Statistics
Matches: 398, Mismatches: 36, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
175 18 0.05
176 380 0.95
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (176 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTATGTTGAAGCAAGTCTAAG
ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
Found at i:13428394 original size:132 final size:132
Alignment explanation
Indices: 13427643--13428428 Score: 446
Period size: 132 Copynumber: 6.0 Consensus size: 132
13427633 GATCCAAGAT
* * * ** *
13427643 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCA-GATTTGGCATCTCTATATTG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATATGATTTGGCATCTCTGTATTG
* ** * * * ** * *
13427707 GCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT-TTACGTTGA-AGCAAATCTA
66 GCAGAGAGCAGATCGAAG--AT-GAAGATTTGGC-ATCTC-TGTATT-GGCAGAGAGCAGATCAA
13427770 AGAT----
125 AGATAACA
* * * *
13427774 GATTTAGCGTCTCTGTATTGGCAGAGAGCATATCGAAGATGACTA--ATTTGGCATCTCTGTATT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-AATATGATTTGGCATCTCTGTATT
* ** * * * ** *
13427837 CGGCGGAGAGCAGATCGAAGACATAGCTGATTTGGC-TTTCATGTGTTTATGTTGA-AGCAAATC
65 -GGCAGAGAGCAGATCGAAG--AT-GAAGATTTGGCATCTC-TGT-ATT-GGCAGAGAGCAGATC
*
13427900 TAAGAT----
123 AAAGATAACA
* * * *
13427906 GATTTGGCATCTTTGTATTGGTAGAGAGCAGATCAAAGATAACA-GATTTGGCATCTCTGTATTG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATATGATTTGGCATCTCTGTATTG
* * * *
13427970 GCAGAGAGCAGATCAAAGATGACAGATTTAGCATCTCTGTATTCAGCGGAGAGCAGATCAAAGAC
66 GCAGAGAGCAGATCGAAGATGA-AGATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCAAAG--
* *
13428035 ATAGCT
127 ATAACA
* * ** * * *
13428041 GATTTGGC-TTTCATGTGTTTAC-GTTGA--A-A-C-AAGTCTAAGATGATTTGGCATCTCTGTA
1 GATTTGGCATCTC-TGTATTGGCAG-AGAGCAGATCGAAG-ATAATATGATTTGGCATCTCTGTA
* *
13428099 TTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCATATCAAAG
63 TTGGCAGAGAGCAGATCGAAGAT-GAAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAG
*
13428164 ATGACA
127 ATAACA
* * * * * *
13428170 GATTTGGCATCTTTGTATTTTGCGGAGAGCAGATCGAAGA-CATAGCTGATTTGGCTTCCACGTG
1 GATTTGGCATCTCTGTA-TTGGCAGAGAGCAGATCGAAGATAATA--TGATTTGGCAT-CTC-TG
* ** * *
13428234 T-TTATGTTGA-AGCA-AGTCTAAGAT---GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCG
61 TATT-GGCAGAGAGCAGA-TCGAAGATGAAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCA
13428293 AAGATAACA
124 AAGATAACA
* * *
13428302 GATTTGACATCTCTATATTGGCAGAGAGCAGATCGAAGATAATA-GATTTGGCGTCTCTGTATTG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATATGATTTGGCATCTCTGTATTG
* * * * * * *
13428366 GCAGAGCGCAGATCGAAGATAGAAGATTTGGCGTCTTTGTATTGTCAAAGAGCATATCTAAGA
66 GCAGAGAGCAGATCGAAGAT-GAAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGA
13428429 GAAGAACAAC
Statistics
Matches: 527, Mismatches: 87, Indels: 81
0.76 0.13 0.12
Matches are distributed among these distances:
127 6 0.01
128 20 0.04
129 46 0.09
130 19 0.04
131 116 0.22
132 261 0.50
133 5 0.01
134 4 0.01
135 29 0.06
136 15 0.03
137 6 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (132 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATATGATTTGGCATCTCTGTATTG
GCAGAGAGCAGATCGAAGATGAAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATAA
CA
Found at i:13428623 original size:44 final size:44
Alignment explanation
Indices: 13428575--13428761 Score: 159
Period size: 44 Copynumber: 4.2 Consensus size: 44
13428565 GATTTTAACA
*
13428575 TGGCATCTCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATT
1 TGGCATCTCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGATT
* * *
13428619 TGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATC
1 TGGCATCTCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGATT
* * * * **
13428665 TGACAT-TCCTATGCTTACAGCGAAGCAGATTGAAGATTTCAGCA--
1 TGGCATCT-CTGTGTTTACAGGGAA-CAGATTGAAGATAGCAG-ATT
* * *
13428709 TGGCATCCCTGTGTTTATAGAGAACA-AGTTGAAGATAGCAGATT
1 TGGCATCTCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGATT
13428753 TGGCATCTC
1 TGGCATCTC
13428762 CATATTCGAC
Statistics
Matches: 112, Mismatches: 21, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 54 0.48
45 6 0.05
46 28 0.25
47 9 0.08
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
TGGCATCTCTGTGTTTACAGGGAACAGATTGAAGATAGCAGATT
Found at i:13428653 original size:134 final size:134
Alignment explanation
Indices: 13428481--13428759 Score: 450
Period size: 134 Copynumber: 2.1 Consensus size: 134
13428471 GATCCAAGAT
* * *
13428481 GATTTGGCATTCCTATGTTTACAGGGAACAGATCGAAGACATAGTAGAGCTGACATTCCTGTGCT
1 GATTTGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGAGCTGACATTCCTATGCT
* * *
13428546 TACAACGAAGCAGATCAAAGATTTTAACATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAACGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGAGAACAAGTTGAAGAT
13428611 AGCA
131 AGCA
* *
13428615 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
1 GATTTGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGAGCTGACATTCCTATGCT
* ** *
13428680 TACAGCGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGAGAACAAGTTGAAGAT
66 TACAACGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGAGAACAAGTTGAAGAT
13428745 AGCA
131 AGCA
13428749 GATTTGGCATC
1 GATTTGGCATC
13428760 TCCATATTCG
Statistics
Matches: 133, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
134 133 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (134 bp):
GATTTGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGAGCTGACATTCCTATGCT
TACAACGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGAGAACAAGTTGAAGAT
AGCA
Found at i:13428683 original size:46 final size:47
Alignment explanation
Indices: 13428609--13428700 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 47
13428599 CAAGTTGAAG
* * * * *
13428609 ATAGCAGATTTGGCATCCCTGTGTTTACAGGGAA-CAGATCGAAGAC
1 ATAGCAGATCTGACATCCCTATGCTTACAGCGAAGCAGATCGAAGAC
* *
13428655 ATAGCAGATCTGACATTCCTATGCTTACAGCGAAGCAGATTGAAGA
1 ATAGCAGATCTGACATCCCTATGCTTACAGCGAAGCAGATCGAAGA
13428701 TTTCAGCATG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 28 0.74
47 10 0.26
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (47 bp):
ATAGCAGATCTGACATCCCTATGCTTACAGCGAAGCAGATCGAAGAC
Found at i:13428903 original size:45 final size:45
Alignment explanation
Indices: 13428832--13428977 Score: 177
Period size: 45 Copynumber: 3.3 Consensus size: 45
13428822 AAGTAGATCC
* *
13428832 AAGATGACAGATTTGGCATCTTTGTATTAGACGGGGAGAAAATCG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATCG
* * * *
13428877 GAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCATATTG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATCG
* * * * *
13428922 AAGA-AGCAAATTTGGCATCTCTGTATTAGACGGGGAGCAGATCA
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATCG
*
13428966 AAGATACCAGAT
1 AAGATAACAGAT
13428978 ATCGCCTTCC
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 39 0.45
45 47 0.55
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (45 bp):
AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATCG
Found at i:13429354 original size:19 final size:19
Alignment explanation
Indices: 13429330--13429446 Score: 184
Period size: 19 Copynumber: 6.2 Consensus size: 19
13429320 AATCTTTAAG
*
13429330 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
13429349 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13429368 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13429387 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13429404 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
13429423 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
13429444 GAT
1 GAT
13429447 CTTGTAATCT
Statistics
Matches: 91, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
17 17 0.19
19 66 0.73
21 8 0.09
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13429360 original size:36 final size:38
Alignment explanation
Indices: 13429330--13429446 Score: 184
Period size: 36 Copynumber: 3.1 Consensus size: 38
13429320 AATCTTTAAG
*
13429330 GATATGCAATTTTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
13429368 GATATGCAATCTTAGATATGATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
*
13429404 GATATGCAATCTTAAATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTT--AGATAT
13429444 GAT
1 GAT
13429447 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
36 35 0.48
38 29 0.40
40 9 0.12
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:13429400 original size:55 final size:56
Alignment explanation
Indices: 13429336--13429446 Score: 188
Period size: 55 Copynumber: 2.0 Consensus size: 56
13429326 TAAGGATATG
* *
13429336 CAATTTTAGATATGATATGCAATCTTAGATATGATATGCAATCTT-AGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAAATATGATATGCAATCTTAAGATATGATA
13429391 CAATCTTAGATATGATATGCAATCTTAAATATGATATGCAATCTTGAAGATATGAT
1 CAATCTTAGATATGATATGCAATCTTAAATATGATATGCAATCTT-AAGATATGAT
13429447 CTTGTAATCT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
55 43 0.83
57 9 0.17
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (56 bp):
CAATCTTAGATATGATATGCAATCTTAAATATGATATGCAATCTTAAGATATGATA
Found at i:13431884 original size:18 final size:17
Alignment explanation
Indices: 13431851--13431889 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
13431841 TTGTATAAAT
13431851 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
13431869 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
13431886 TGTG
1 TGTG
13431890 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:13439187 original size:18 final size:17
Alignment explanation
Indices: 13439154--13439192 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
13439144 TTGTATAAAT
13439154 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
13439172 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
13439189 TGTG
1 TGTG
13439193 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:13442184 original size:32 final size:32
Alignment explanation
Indices: 13442148--13442215 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 32
13442138 ATGAATAATC
* *
13442148 ATATCTTTAAAAGT-GACATAACTATTCAATTA
1 ATATCTTTAAAA-TAAACATAACTATTCAAGTA
* *
13442180 ATATCTTTTAAATAAATATAACTATTCAAGTA
1 ATATCTTTAAAATAAACATAACTATTCAAGTA
13442212 ATAT
1 ATAT
13442216 TGCTTGAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 1 0.03
32 30 0.97
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (32 bp):
ATATCTTTAAAATAAACATAACTATTCAAGTA
Found at i:13445153 original size:28 final size:28
Alignment explanation
Indices: 13445122--13445191 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
13445112 AAATTTTAAA
*
13445122 AAAAATTATAAAATTTATTTTTAAAA-T-T
1 AAAAATTATAAAA-TTA-TTTAAAAAGTAT
*
13445150 AAAAATCATTAAAATTATTTAAAAAGTAT
1 AAAAATTA-TAAAATTATTTAAAAAGTAT
*
13445179 AAAAATTACAAAA
1 AAAAATTATAAAA
13445192 AAATATTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
27 7 0.20
28 15 0.43
29 13 0.37
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (28 bp):
AAAAATTATAAAATTATTTAAAAAGTAT
Found at i:13451101 original size:13 final size:13
Alignment explanation
Indices: 13451085--13451144 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
13451075 AAATATTTAG
13451085 ATGAAATGGTTAT
1 ATGAAATGGTTAT
* *
13451098 ATGAAATGATTAC
1 ATGAAATGGTTAT
* *
13451111 ATGAAATTGTTGT
1 ATGAAATGGTTAT
**
13451124 ATGATTTGGTTAT
1 ATGAAATGGTTAT
13451137 ATGGAAAT
1 AT-GAAAT
13451145 AGATGTATAA
Statistics
Matches: 34, Mismatches: 12, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
13 31 0.91
14 3 0.09
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.40
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:13451101 original size:26 final size:26
Alignment explanation
Indices: 13451048--13451127 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 26
13451038 TGATATACAG
*
13451048 AATGATTACATGTTAAAT-GTGTAAATGA
1 AATGATTACATG--AAATGGT-TATATGA
*
13451076 AAT-ATTTAGATGAAATGGTTATATGA
1 AATGA-TTACATGAAATGGTTATATGA
* *
13451102 AATGATTACATGAAATTGTTGTATGA
1 AATGATTACATGAAATGGTTATATGA
13451128 TTTGGTTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
26 31 0.70
27 4 0.09
28 9 0.20
ACGTcount: A:0.41, C:0.03, G:0.19, T:0.38
Consensus pattern (26 bp):
AATGATTACATGAAATGGTTATATGA
Found at i:13451979 original size:9 final size:9
Alignment explanation
Indices: 13451962--13451998 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
13451952 TGAGTTTTCA
13451962 AATTCGAAT
1 AATTCGAAT
*
13451971 AACTCGAAT
1 AATTCGAAT
13451980 AATTCGAAT
1 AATTCGAAT
13451989 AATTCGAAT
1 AATTCGAAT
13451998 A
1 A
13451999 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:13452242 original size:29 final size:30
Alignment explanation
Indices: 13452210--13452268 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
13452200 AAAACTTTTT
*
13452210 ATTTTCCTCCT-AAACTTTTACTCCCTTCC
1 ATTTTCCCCCTAAAACTTTTACTCCCTTCC
*
13452239 ATTTTCCCCCTAAAACTTTTACTTCCTTCC
1 ATTTTCCCCCTAAAACTTTTACTCCCTTCC
13452269 CATCCCACCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.19, C:0.37, G:0.00, T:0.44
Consensus pattern (30 bp):
ATTTTCCCCCTAAAACTTTTACTCCCTTCC
Found at i:13457191 original size:24 final size:24
Alignment explanation
Indices: 13457164--13457219 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
13457154 AATTAAAAAA
* *
13457164 AAAAATTTAAAAATTTTATTTTTT
1 AAAAATTTAAAAAATTAATTTTTT
13457188 -AAAATTATAAAAAATTAATTTTTT
1 AAAAATT-TAAAAAATTAATTTTTT
*
13457212 ATAAATTT
1 AAAAATTT
13457220 GTAAAACATC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 6 0.22
24 16 0.59
25 5 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
AAAAATTTAAAAAATTAATTTTTT
Found at i:13458848 original size:37 final size:37
Alignment explanation
Indices: 13458796--13458911 Score: 142
Period size: 37 Copynumber: 3.1 Consensus size: 37
13458786 GCCAAGACAA
* * *
13458796 GCAAAGAAAAAATGGAGATCAACAGTAAAGATTCTCT
1 GCAAAGAAAAGATGGAGATCAATAGTAAAGATTCTAT
* *
13458833 GCAAATAAAAGATGGAGATCAATAGTAAAGATTATAT
1 GCAAAGAAAAGATGGAGATCAATAGTAAAGATTCTAT
* * * * *
13458870 ACAAAGAAAAGACGGAGATTAATAGTGAAGATTCTTT
1 GCAAAGAAAAGATGGAGATCAATAGTAAAGATTCTAT
13458907 GCAAA
1 GCAAA
13458912 AGTTTTGTAA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.49, C:0.09, G:0.20, T:0.22
Consensus pattern (37 bp):
GCAAAGAAAAGATGGAGATCAATAGTAAAGATTCTAT
Found at i:13460512 original size:39 final size:38
Alignment explanation
Indices: 13460446--13460521 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 38
13460436 TCATAATTAG
* * *
13460446 TTTTGAATTCAATTTTTAAGATATTTACCTAATTTTTT
1 TTTTGAATTCAATCTTTAAGATATTTACATAAATTTTT
13460484 TTTTGAAATTCAATCTTTAAGACT-TTTACATAAATTTT
1 TTTTG-AATTCAATCTTTAAGA-TATTTACATAAATTTT
13460522 CAAGATAGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
38 5 0.15
39 27 0.82
40 1 0.03
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.54
Consensus pattern (38 bp):
TTTTGAATTCAATCTTTAAGATATTTACATAAATTTTT
Found at i:13460571 original size:22 final size:22
Alignment explanation
Indices: 13460546--13460587 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
13460536 TCTTTTACCT
* *
13460546 TTATTTAAGTTTACAGTAAGTA
1 TTATTTAAGCTTACAATAAGTA
13460568 TTATTTAAGCTTACAATAAG
1 TTATTTAAGCTTACAATAAG
13460588 GGTTTGTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (22 bp):
TTATTTAAGCTTACAATAAGTA
Found at i:13469629 original size:84 final size:84
Alignment explanation
Indices: 13469371--13469675 Score: 290
Period size: 84 Copynumber: 3.6 Consensus size: 84
13469361 ACCAGCCAAC
* * * * * * *
13469371 AAGCAACCACTCAAATTCTTACATCCAATTTGCCTT-CTACCACCACTAAGCCTCATGTAGCAAC
1 AAGCAACCACTCAAACTCCTACAACCAATTTG-CTTCCTACCACTACTAAGCCTCATGCATCAAT
* *
13469435 AATTGAGGCCTTAAACCAGA
65 AATTAAGGCCCTAAACCAGA
* ** * * * **
13469455 AAGCAATCACTCAAACTCCTACAACCAATCGGCATCCTACCACTATTAAGCTTTTTGCATCAACT
1 AAGCAACCACTCAAACTCCTACAACCAATTTGCTTCCTACCACTACTAAGCCTCATGCATCAA-T
* *
13469520 -ACTAAGGCCCTAAACCAAA
65 AATTAAGGCCCTAAACCAGA
* * *
13469539 AAGCAACCACCCAAACTCCTACAACCAATTTGTTTCCTGCCACTACTAAGCCTCATGCATCAATA
1 AAGCAACCACTCAAACTCCTACAACCAATTTGCTTCCTACCACTACTAAGCCTCATGCATCAATA
* *
13469604 ATTAAGGCCCTAAACTAGC
66 ATTAAGGCCCTAAACCAGA
* * * * * * * *
13469623 ATGCAACCACTCAGATTCTTGCAACTAGTTTGCTTCTTACCACTACTAAGCCT
1 AAGCAACCACTCAAACTCCTACAACCAATTTGCTTCCTACCACTACTAAGCCT
13469676 GTTACAATGA
Statistics
Matches: 173, Mismatches: 45, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
83 3 0.02
84 170 0.98
ACGTcount: A:0.34, C:0.32, G:0.10, T:0.25
Consensus pattern (84 bp):
AAGCAACCACTCAAACTCCTACAACCAATTTGCTTCCTACCACTACTAAGCCTCATGCATCAATA
ATTAAGGCCCTAAACCAGA
Found at i:13471526 original size:15 final size:15
Alignment explanation
Indices: 13471508--13471545 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
13471498 AATTTAACTC
*
13471508 AATTTTAGTTAATTT
1 AATTTTAATTAATTT
13471523 AATTTTAATTAATTT
1 AATTTTAATTAATTT
13471538 --TTTTAATT
1 AATTTTAATT
13471546 TTCGAATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.36
15 14 0.64
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
AATTTTAATTAATTT
Found at i:13472211 original size:6 final size:7
Alignment explanation
Indices: 13472190--13472214 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
13472180 TTGGGTTGAA
13472190 TTTATTT
1 TTTATTT
13472197 TTTATTT
1 TTTATTT
13472204 TTTATTT
1 TTTATTT
13472211 TTTA
1 TTTA
13472215 AACAATTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTATTT
Done.