Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 51 of 333
Found at i:14734796 original size:17 final size:18
Alignment explanation
Indices: 14734763--14734810 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
14734753 TTTCATTTTC
*
14734763 AATTAATTTAA-TTTTAA
1 AATTATTTTAATTTTTAA
*
14734780 AGTT-TTTTAATTTTTAA
1 AATTATTTTAATTTTTAA
14734797 AATTATTTT-ATTTT
1 AATTATTTTAATTTT
14734811 GTTTATATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 5 0.19
17 17 0.65
18 4 0.15
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATTATTTTAATTTTTAA
Found at i:14738209 original size:24 final size:24
Alignment explanation
Indices: 14738182--14738232 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
14738172 AAAGAAAGAA
*
14738182 ATAAAAAAGAAGACGAGGGTGGAG
1 ATAAAAAAGAAGACGAGGGTCGAG
* *
14738206 ATAAAGATGAAGACGAGGGTCGAG
1 ATAAAAAAGAAGACGAGGGTCGAG
14738230 ATA
1 ATA
14738233 GAGATGAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.06, G:0.35, T:0.12
Consensus pattern (24 bp):
ATAAAAAAGAAGACGAGGGTCGAG
Found at i:14738237 original size:24 final size:24
Alignment explanation
Indices: 14738190--14738264 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
14738180 AAATAAAAAA
*
14738190 GAAGACGAGGGTGGAGATAAAGAT
1 GAAGACGAGGGTCGAGATAAAGAT
*
14738214 GAAGACGAGGGTCGAGATAGAGAT
1 GAAGACGAGGGTCGAGATAAAGAT
* * * *
14738238 GAAGACAAGGATTGAGATGAAGAT
1 GAAGACGAGGGTCGAGATAAAGAT
14738262 GAA
1 GAA
14738265 TACAAGGTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.43, C:0.05, G:0.39, T:0.13
Consensus pattern (24 bp):
GAAGACGAGGGTCGAGATAAAGAT
Found at i:14738269 original size:24 final size:23
Alignment explanation
Indices: 14738203--14738271 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
14738193 GACGAGGGTG
* *
14738203 GAGATAAAGATGAAGACGAGGGTC
1 GAGAT-AAGATGAAGACAAGGATC
*
14738227 GAGATAGAGATGAAGACAAGGATT
1 GAGATA-AGATGAAGACAAGGATC
*
14738251 GAGATGAAGATGAATACAAGG
1 GAGAT-AAGATGAAGACAAGG
14738272 TTTATGAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 37 0.95
25 1 0.03
ACGTcount: A:0.45, C:0.06, G:0.35, T:0.14
Consensus pattern (23 bp):
GAGATAAGATGAAGACAAGGATC
Found at i:14739596 original size:21 final size:21
Alignment explanation
Indices: 14739555--14739649 Score: 88
Period size: 21 Copynumber: 4.6 Consensus size: 21
14739545 AGAATACTAC
* * *
14739555 TTAT-TTTGAATCGATTGTCT
1 TTATGTTTAAATCAATTATCT
*
14739575 TTATGTTTAAATAAATTATCT
1 TTATGTTTAAATCAATTATCT
* *
14739596 TTATGTTTAAATCGATTGTCT
1 TTATGTTTAAATCAATTATCT
* *
14739617 TTCTGTTTAAATCAA-T-TCA
1 TTATGTTTAAATCAATTATCT
14739636 TTATTGTTTAAATC
1 TTA-TGTTTAAATC
14739650 TATTCTTTGT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
19 4 0.06
20 15 0.24
21 43 0.69
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.53
Consensus pattern (21 bp):
TTATGTTTAAATCAATTATCT
Found at i:14739624 original size:42 final size:40
Alignment explanation
Indices: 14739555--14739649 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 40
14739545 AGAATACTAC
* *
14739555 TTAT-TTTGAATCGATTGTCTTTATGTTTAAATAAATTATCT
1 TTATGTTTAAATCGATTGTCTTTATGTTTAAATAAA-T-TCA
* *
14739596 TTATGTTTAAATCGATTGTCTTTCTGTTTAAATCAATTCA
1 TTATGTTTAAATCGATTGTCTTTATGTTTAAATAAATTCA
14739636 TTATTGTTTAAATC
1 TTA-TGTTTAAATC
14739650 TATTCTTTGT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 5 0.10
41 15 0.31
42 28 0.58
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.53
Consensus pattern (40 bp):
TTATGTTTAAATCGATTGTCTTTATGTTTAAATAAATTCA
Found at i:14739665 original size:20 final size:20
Alignment explanation
Indices: 14739622--14739666 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14739612 TGTCTTTCTG
*
14739622 TTTAAATCAATTCATTATTG
1 TTTAAATCAATTCATTATTA
* * *
14739642 TTTAAATCTATTCTTTGTTA
1 TTTAAATCAATTCATTATTA
14739662 TTTAA
1 TTTAA
14739667 CCTAATTCAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.09, G:0.04, T:0.56
Consensus pattern (20 bp):
TTTAAATCAATTCATTATTA
Found at i:14748825 original size:151 final size:151
Alignment explanation
Indices: 14748551--14748853 Score: 597
Period size: 151 Copynumber: 2.0 Consensus size: 151
14748541 CGAGTTATGA
14748551 TTTGTTAGCCAACAACATACCATGTAATTTGGGTGAAGGGCATGTGCCATGTCAGCCGAAACAAG
1 TTTGTTAGCCAACAACATACCATGTAATTTGGGTGAAGGGCATGTGCCATGTCAGCCGAAACAAG
14748616 GAAACTTCTCTGGATAGCTTTTGCTAGCATCTGAAAAGAAACAATGTCAATCTATATGCTCAGAT
66 GAAACTTCTCTGGATAGCTTTTGCTAGCATCTGAAAAGAAACAATGTCAATCTATATGCTCAGAT
14748681 ATGTGCTAACTGCTCTCAAAT
131 ATGTGCTAACTGCTCTCAAAT
*
14748702 TTTGTTAGCCAACAACATACCATGTAATTTGGGTGAAGGGCATGTGCCATGTCAGCTGAAACAAG
1 TTTGTTAGCCAACAACATACCATGTAATTTGGGTGAAGGGCATGTGCCATGTCAGCCGAAACAAG
14748767 GAAACTTCTCTGGATAGCTTTTGCTAGCATCTGAAAAGAAACAATGTCAATCTATATGCTCAGAT
66 GAAACTTCTCTGGATAGCTTTTGCTAGCATCTGAAAAGAAACAATGTCAATCTATATGCTCAGAT
14748832 ATGTGCTAACTGCTCTCAAAT
131 ATGTGCTAACTGCTCTCAAAT
14748853 T
1 T
14748854 GGAAAATCTG
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
151 151 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (151 bp):
TTTGTTAGCCAACAACATACCATGTAATTTGGGTGAAGGGCATGTGCCATGTCAGCCGAAACAAG
GAAACTTCTCTGGATAGCTTTTGCTAGCATCTGAAAAGAAACAATGTCAATCTATATGCTCAGAT
ATGTGCTAACTGCTCTCAAAT
Found at i:14751840 original size:17 final size:18
Alignment explanation
Indices: 14751815--14751848 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14751805 AAAATTATTA
*
14751815 ATTATTATAA-AAAAATT
1 ATTAGTATAATAAAAATT
14751832 ATTAGTATAATAAAAAT
1 ATTAGTATAATAAAAAT
14751849 GATTCCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (18 bp):
ATTAGTATAATAAAAATT
Found at i:14754641 original size:30 final size:30
Alignment explanation
Indices: 14754605--14754664 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
14754595 AGTCTGAGGA
*
14754605 AGCTATGAGAAAGCAGTGCCCTAACGTATT
1 AGCTATGAGAAAGCAGTGCCCTAACCTATT
14754635 AGCTATGAGAAAGCAGTGCCCTAACCTATT
1 AGCTATGAGAAAGCAGTGCCCTAACCTATT
14754665 CACTAGTAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (30 bp):
AGCTATGAGAAAGCAGTGCCCTAACCTATT
Found at i:14755623 original size:21 final size:23
Alignment explanation
Indices: 14755583--14755624 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
14755573 AAAATATCCC
*
14755583 TAATATATATTTTGGATTGAATT
1 TAATAAATATTTTGGATTGAATT
14755606 TAATAAATA-TTT-GATTGAA
1 TAATAAATATTTTGGATTGAA
14755625 CGAGTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 3 0.17
23 8 0.44
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (23 bp):
TAATAAATATTTTGGATTGAATT
Found at i:14755877 original size:40 final size:40
Alignment explanation
Indices: 14755833--14755978 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
14755823 TTGACAACAA
* *
14755833 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
1 TCGGCTATATATGACACTTAGTGTGCGATTCGAGATAGCT
* * * *
14755873 TCGGCTATATATGGCACTTAGTGTGCAAAATCAAGATAGCT
1 TCGGCTATATATGACACTTAGTGTGC-GATTCGAGATAGCT
*
14755914 TCGGCTATATATGACACTTAGTGTGCGATTTGAGATAGCT
1 TCGGCTATATATGACACTTAGTGTGCGATTCGAGATAGCT
* **
14755954 TTGGCTATATACAACACTTAGTGTG
1 TCGGCTATATATGACACTTAGTGTG
14755979 TGAGATATTG
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 58 0.62
41 35 0.38
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (40 bp):
TCGGCTATATATGACACTTAGTGTGCGATTCGAGATAGCT
Found at i:14755924 original size:41 final size:40
Alignment explanation
Indices: 14755833--14755939 Score: 160
Period size: 41 Copynumber: 2.6 Consensus size: 40
14755823 TTGACAACAA
* * *
14755833 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCAAATCAACATAGCT
*
14755873 TCGGCTATATATGGCACTTAGTGTGCAAAATCAAGATAGCT
1 TCGGCTATATATGGCACTTAGTGTGC-AAATCAACATAGCT
*
14755914 TCGGCTATATATGACACTTAGTGTGC
1 TCGGCTATATATGGCACTTAGTGTGC
14755940 GATTTGAGAT
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
40 26 0.43
41 35 0.57
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGCAAATCAACATAGCT
Found at i:14757514 original size:145 final size:144
Alignment explanation
Indices: 14757193--14757577 Score: 470
Period size: 145 Copynumber: 2.6 Consensus size: 144
14757183 AATGCTCACA
* *
14757193 TTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTTAAAAAAACAAATTTTTATTTTTTAAAA
1 TTTGTTTTAAAA-TTTAAACTTTCCTTTAAAATAAC-TAAAAAAACAAATTTTTAATTTTTAAAA
* * *
14757258 TCTAAACTCTCTCCTTTTTTAAAAAAATACTATTTTTCTTAAAAGATTGAAGCGTTTATTTTGAA
64 TCTAAACTTTCTCC---TTT-AAAAAA-A-TATTTTTCTTAAAAGATTAAAGCGTTTACTTTGAA
* * *
14757323 ATAGTTGGAAAAAAATCGAAAT
123 ATAGTTGAAAAAAAATCAAAAC
* * * * * *
14757345 TTTATTTTCAAATTTTAAAATTTCCTTTAAAATAACTAAAAAAATATATTTTTAATTTTCAAAAT
1 TTTGTTTT-AAAATTTAAACTTTCCTTTAAAATAACTAAAAAAACAAATTTTTAATTTTTAAAAT
* *
14757410 CTAAACTTTCTCCTTTAAAAAAATATTTTTCTT-AAAGATTAAAGCTTTTACTTTGAAGTAGTTG
65 CTAAACTTTCTCCTTTAAAAAAATATTTTTCTTAAAAGATTAAAGCGTTTACTTTGAAATAGTTG
14757474 AAAAAAAAATCAAAAC
130 -AAAAAAAATCAAAAC
*
14757490 TTTGTTTTAAGAATTTAAACTTTCCTTTAAAATAATTAAAAAAACAAATTTTT-ATTTGTTAAAA
1 TTTGTTTTAA-AATTTAAACTTTCCTTTAAAATAACTAAAAAAACAAATTTTTAATTT-TTAAAA
* *
14757554 TCAAAAATTTCT-CTTTAAAAAAAT
64 TCTAAACTTTCTCCTTTAAAAAAAT
14757578 CACAACTTTT
Statistics
Matches: 204, Mismatches: 25, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
144 45 0.22
145 81 0.40
146 1 0.00
147 6 0.03
148 3 0.01
151 37 0.18
152 28 0.14
153 3 0.01
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.42
Consensus pattern (144 bp):
TTTGTTTTAAAATTTAAACTTTCCTTTAAAATAACTAAAAAAACAAATTTTTAATTTTTAAAATC
TAAACTTTCTCCTTTAAAAAAATATTTTTCTTAAAAGATTAAAGCGTTTACTTTGAAATAGTTGA
AAAAAAATCAAAAC
Found at i:14757754 original size:2 final size:2
Alignment explanation
Indices: 14757747--14757771 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14757737 CTATGGGTAA
14757747 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14757772 GAAGAAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14766996 original size:17 final size:17
Alignment explanation
Indices: 14766966--14767034 Score: 68
Period size: 17 Copynumber: 4.1 Consensus size: 17
14766956 ATTTATAGTA
*
14766966 TTTATATTTCATTATAT
1 TTTATATTTTATTATAT
* *
14766983 TTTATTTTTTATTACAT
1 TTTATATTTTATTATAT
* *
14767000 ATTACATTTTATTATAT
1 TTTATATTTTATTATAT
*
14767017 ATTTTTATTTTATT-TAT
1 -TTTATATTTTATTATAT
14767034 T
1 T
14767035 ATATGGTTTA
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
16 1 0.02
17 30 0.73
18 10 0.24
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTATATTTTATTATAT
Found at i:14767035 original size:22 final size:22
Alignment explanation
Indices: 14767007--14767062 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
14766997 CATATTACAT
*
14767007 TTTATTATATATTTTTATTTTA
1 TTTATTATATATTTTTATATTA
**
14767029 TTTATTATAT-GGTTTATATTA
1 TTTATTATATATTTTTATATTA
14767050 -TTA-TATATATTTT
1 TTTATTATATATTTT
14767063 GCTTATAAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
19 5 0.18
20 5 0.18
21 8 0.29
22 10 0.36
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.68
Consensus pattern (22 bp):
TTTATTATATATTTTTATATTA
Found at i:14767050 original size:21 final size:21
Alignment explanation
Indices: 14767008--14767059 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
14766998 ATATTACATT
*
14767008 TTATTATATAT-T--TTTATT
1 TTATTATATATATGGTTTATA
14767026 TTATT-TATTATATGGTTTATA
1 TTATTATA-TATATGGTTTATA
14767047 TTATTATATATAT
1 TTATTATATATAT
14767060 TTTGCTTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 2 0.07
18 8 0.29
19 1 0.04
21 15 0.54
22 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (21 bp):
TTATTATATATATGGTTTATA
Found at i:14770985 original size:105 final size:105
Alignment explanation
Indices: 14770803--14771014 Score: 424
Period size: 105 Copynumber: 2.0 Consensus size: 105
14770793 ATCGTCAGAC
14770803 AAAGGACGAGAATTAGCATTGTTATTAGATAGGGTTAAGACTCTAGGCCTACAGGTAAAAGTGTA
1 AAAGGACGAGAATTAGCATTGTTATTAGATAGGGTTAAGACTCTAGGCCTACAGGTAAAAGTGTA
14770868 TTTGTAATCCGTTTTATGAAAAGATTTTTGTTCCTTAAAT
66 TTTGTAATCCGTTTTATGAAAAGATTTTTGTTCCTTAAAT
14770908 AAAGGACGAGAATTAGCATTGTTATTAGATAGGGTTAAGACTCTAGGCCTACAGGTAAAAGTGTA
1 AAAGGACGAGAATTAGCATTGTTATTAGATAGGGTTAAGACTCTAGGCCTACAGGTAAAAGTGTA
14770973 TTTGTAATCCGTTTTATGAAAAGATTTTTGTTCCTTAAAT
66 TTTGTAATCCGTTTTATGAAAAGATTTTTGTTCCTTAAAT
14771013 AA
1 AA
14771015 CGTTTTCTAA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 107 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (105 bp):
AAAGGACGAGAATTAGCATTGTTATTAGATAGGGTTAAGACTCTAGGCCTACAGGTAAAAGTGTA
TTTGTAATCCGTTTTATGAAAAGATTTTTGTTCCTTAAAT
Found at i:14777211 original size:13 final size:14
Alignment explanation
Indices: 14777195--14777230 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
14777185 CAATCTCATA
14777195 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
14777208 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
14777221 TCTC-ATTTCA
1 TCTCAATTTCA
14777231 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:14777422 original size:21 final size:20
Alignment explanation
Indices: 14777398--14777478 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 20
14777388 GACACATAAA
14777398 GTGCCTAAAAATACACACGAG
1 GTGCCT-AAAATACACACGAG
* **
14777419 GTGCCTGATACGACACACGAG
1 GTGCCT-AAAATACACACGAG
* *
14777440 GTGCCTGATATGACACACGAG
1 GTGCCTAAAAT-ACACACGAG
*
14777461 GTGCCTGAAATACGACAC
1 GTGCCTAAAATAC-ACAC
14777479 ATAAAGTGCC
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
20 2 0.04
21 46 0.96
ACGTcount: A:0.33, C:0.26, G:0.25, T:0.16
Consensus pattern (20 bp):
GTGCCTAAAATACACACGAG
Found at i:14777435 original size:42 final size:43
Alignment explanation
Indices: 14777384--14777489 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 43
14777374 CCTGATCAGT
14777384 ATACGACACATAAAGTGCCTAAAAAT-ACACACGAGGTGCCTG-
1 ATACGACACATAAAGTGCCT-AAAATGACACACGAGGTGCCTGA
** * * *
14777426 ATACGACACACGAGGTGCCTGATATGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTAAAATGACACACGAGGTGCCTG-A
14777470 ATACGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
14777490 CATCAATAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 3 0.06
42 33 0.62
44 17 0.32
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.17
Consensus pattern (43 bp):
ATACGACACATAAAGTGCCTAAAATGACACACGAGGTGCCTGA
Found at i:14777436 original size:23 final size:21
Alignment explanation
Indices: 14777410--14777479 Score: 113
Period size: 21 Copynumber: 3.2 Consensus size: 21
14777400 GCCTAAAAAT
14777410 ACACACGAGGTGCCTGATACG
1 ACACACGAGGTGCCTGATACG
*
14777431 ACACACGAGGTGCCTGATATG
1 ACACACGAGGTGCCTGATACG
14777452 ACACACGAGGTGCCTGAAATACG
1 ACACACGAGGTGCCTG--ATACG
14777475 ACACA
1 ACACA
14777480 TAAAGTGCCT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
21 36 0.80
23 9 0.20
ACGTcount: A:0.33, C:0.27, G:0.26, T:0.14
Consensus pattern (21 bp):
ACACACGAGGTGCCTGATACG
Found at i:14777873 original size:15 final size:14
Alignment explanation
Indices: 14777848--14777888 Score: 64
Period size: 15 Copynumber: 2.8 Consensus size: 14
14777838 ATATATATTT
14777848 TATAATTCAATCAA
1 TATAATTCAATCAA
14777862 TATAATTTCAATCAA
1 TATAA-TTCAATCAA
14777877 TATAAATTCAAT
1 TAT-AATTCAAT
14777889 AAAACAGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.20
15 18 0.72
16 2 0.08
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (14 bp):
TATAATTCAATCAA
Found at i:14778051 original size:2 final size:2
Alignment explanation
Indices: 14778044--14778071 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14778034 ATATCTCATT
14778044 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
14778072 TATATATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:14778882 original size:9 final size:9
Alignment explanation
Indices: 14778868--14778900 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
14778858 GTTTCTTTCC
14778868 TCTTTTTAT
1 TCTTTTTAT
14778877 TCTTTTTAT
1 TCTTTTTAT
14778886 TCTTTTGT-T
1 TCTTTT-TAT
14778895 TCTTTT
1 TCTTTT
14778901 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 22 0.96
10 1 0.04
ACGTcount: A:0.06, C:0.12, G:0.03, T:0.79
Consensus pattern (9 bp):
TCTTTTTAT
Found at i:14782483 original size:44 final size:44
Alignment explanation
Indices: 14782433--14782721 Score: 287
Period size: 44 Copynumber: 6.5 Consensus size: 44
14782423 TTTACATCGA
* * *
14782433 AGCAGATCGAAGATACCAGATTTGGCGTCTCTGTATTGGCAGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGGCAGAG
*** * * * **
14782477 AGCAGATCGAAGATGTAGTTGATTTGGCTTTCACGTGT-TTACGTTGA-
1 AGCAGATCGAAGA--TAACAGATTTGGC-ATCTC-TGTATT-GGCAGAG
* * *
14782524 AGCAAATCGAAGATAACAGATTTGGTATCTCTGTATTGGCGGAG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGGCAGAG
* * * *
14782568 AGCAGATCCAAGACAGCAGATTTGGCATCCCTGTATTGGCAGAG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGGCAGAG
* *
14782612 AGTAGATCGAAGACAACAGATTTGGCATCTCTGTATTGGCAGAG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGGCAGAG
* * * *
14782656 AGCAGATCGAAGACAGCAGATTTGGCATCTCTATATTGGTAGAG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGGCAGAG
14782700 AGCAGA-CTGAAGATAACAGATT
1 AGCAGATC-GAAGATAACAGATT
14782722 GGTGTTCTTG
Statistics
Matches: 201, Mismatches: 36, Indels: 16
0.79 0.14 0.06
Matches are distributed among these distances:
43 7 0.03
44 153 0.76
45 9 0.04
46 10 0.05
47 17 0.08
48 5 0.02
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (44 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGGCAGAG
Found at i:14782964 original size:8 final size:8
Alignment explanation
Indices: 14782938--14782976 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
14782928 CCCATACATT
*
14782938 AATAAATA
1 AATAAAAA
* *
14782946 AATGAATA
1 AATAAAAA
14782954 AATAAAAA
1 AATAAAAA
14782962 AATAAAAA
1 AATAAAAA
14782970 AATAAAA
1 AATAAAA
14782977 GTTTATTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (8 bp):
AATAAAAA
Found at i:14784321 original size:7 final size:7
Alignment explanation
Indices: 14784304--14784403 Score: 53
Period size: 7 Copynumber: 13.6 Consensus size: 7
14784294 ACATCCATTA
14784304 TATTATAT
1 TATT-TAT
14784312 TATTTAT
1 TATTTAT
14784319 TATTTAT
1 TATTTAT
*
14784326 TATTTTT
1 TATTTAT
14784333 TATTT-T
1 TATTTAT
*
14784339 TAAATTA-
1 T-ATTTAT
*
14784346 CATGTTAT
1 TAT-TTAT
14784354 TATATT-T
1 TAT-TTAT
14784361 TATTATAT
1 TATT-TAT
*
14784369 ATATAATAT
1 -TAT-TTAT
14784378 TATTATAT
1 TATT-TAT
*
14784386 TTTTTAT
1 TATTTAT
*
14784393 TATGTAT
1 TATTTAT
14784400 TATT
1 TATT
14784404 ACAAAATTAT
Statistics
Matches: 71, Mismatches: 12, Indels: 19
0.70 0.12 0.19
Matches are distributed among these distances:
6 4 0.06
7 43 0.61
8 18 0.25
9 6 0.08
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (7 bp):
TATTTAT
Found at i:14784489 original size:24 final size:24
Alignment explanation
Indices: 14784462--14784528 Score: 57
Period size: 24 Copynumber: 2.9 Consensus size: 24
14784452 TTTATATTTC
14784462 ATTATATTTTATTTTTTATTACAT
1 ATTATATTTTATTTTTTATTACAT
* * ** *
14784486 ATTACATATTACATTTTATTATAT
1 ATTATATTTTATTTTTTATTACAT
* *
14784510 ATT-T-TTATATTATTTATTA
1 ATTATATTTTATTTTTTATTA
14784529 TATGGTTTAT
Statistics
Matches: 32, Mismatches: 11, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
22 10 0.31
24 22 0.69
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (24 bp):
ATTATATTTTATTTTTTATTACAT
Found at i:14784537 original size:12 final size:11
Alignment explanation
Indices: 14784500--14784560 Score: 51
Period size: 11 Copynumber: 5.8 Consensus size: 11
14784490 CATATTACAT
14784500 TTTATTATATA
1 TTTATTATATA
14784511 TTT-TTATATTA
1 TTTATTATA-TA
*
14784522 TTTATTATATGG
1 TTTATTATAT-A
14784534 TTTA-TAT-TA
1 TTTATTATATA
14784543 -TTA-TATATA
1 TTTATTATATA
*
14784552 TTTCTTATA
1 TTTATTATA
14784561 AGTTATATTC
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
8 6 0.15
9 2 0.05
10 8 0.20
11 16 0.39
12 9 0.22
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (11 bp):
TTTATTATATA
Found at i:14784559 original size:21 final size:19
Alignment explanation
Indices: 14784504--14784560 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 19
14784494 TTACATTTTA
14784504 TTATATATTTTTATATTAT
1 TTATATATTTTTATATTAT
*
14784523 TTATTATATGGTTTATATTAT
1 TTA-TATAT-TTTTATATTAT
14784544 TATATATATTTCTTATA
1 T-TATATATTT-TTATA
14784561 AGTTATATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 3 0.09
20 6 0.19
21 21 0.66
22 2 0.06
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (19 bp):
TTATATATTTTTATATTAT
Found at i:14796758 original size:20 final size:20
Alignment explanation
Indices: 14796720--14796758 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14796710 TGGAGTAGGA
**
14796720 ATATCGATACCTTGGAAAAC
1 ATATCGATACCTTAAAAAAC
14796740 ATATCGATACCTTAAAAAA
1 ATATCGATACCTTAAAAAA
14796759 ATTATCAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.18, G:0.10, T:0.26
Consensus pattern (20 bp):
ATATCGATACCTTAAAAAAC
Found at i:14807187 original size:47 final size:47
Alignment explanation
Indices: 14807129--14807258 Score: 156
Period size: 47 Copynumber: 2.8 Consensus size: 47
14807119 GTACGAATAA
* * **
14807129 TACCTTGATTTGGCTACGGGCCATGGTTTAGGTA-T-TTGGAAAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGGGAAA-G-GT
* *
14807176 TACCTTGATTTGGCTATAGGCCATGGTATAGGTACTCCGGGATAGGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGGGAAAGGT
* *
14807223 TACCTTGATTTGTCTATGGGCCATGGTATAAGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
14807259 TATTGATTGT
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
47 66 0.92
48 2 0.03
49 4 0.06
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGGGAAAGGT
Found at i:14812376 original size:25 final size:25
Alignment explanation
Indices: 14812348--14812395 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14812338 CATCAACGAG
*
14812348 TTAGTCACATAAGTGCATGTAATAT
1 TTAGTCACACAAGTGCATGTAATAT
14812373 TTAGTCACACAAGTGCATGTAAT
1 TTAGTCACACAAGTGCATGTAAT
14812396 CATCCATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (25 bp):
TTAGTCACACAAGTGCATGTAATAT
Found at i:14812703 original size:24 final size:24
Alignment explanation
Indices: 14812676--14812768 Score: 80
Period size: 24 Copynumber: 3.8 Consensus size: 24
14812666 AGATATGATC
*
14812676 AGTAAGCTCTTCCTGAGCTG-AAAT
1 AGTAAGCTCTTAC-GAGCTGAAAAT
* *
14812700 AGTAAGCTCTGACGAGTTGAAAAT
1 AGTAAGCTCTTACGAGCTGAAAAT
* * *
14812724 AGTAAGCTCTTGCGAACTGATATAT
1 AGTAAGCTCTTACGAGCTGA-AAAT
* *
14812749 CGGTAAGCTCATACGAGCTG
1 -AGTAAGCTCTTACGAGCTG
14812769 TGGTGAGTCT
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
23 5 0.09
24 31 0.57
25 3 0.06
26 15 0.28
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (24 bp):
AGTAAGCTCTTACGAGCTGAAAAT
Found at i:14821738 original size:4 final size:4
Alignment explanation
Indices: 14821729--14821753 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
14821719 TTACTACTAA
14821729 TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG T
14821754 TTTTTTAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:14822928 original size:25 final size:27
Alignment explanation
Indices: 14822869--14822929 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 27
14822859 TTTAATAAAA
* *
14822869 ATTTTAA-AATGTAAAAATGAAATAGT
1 ATTTTAAGAAAGTAAAAATGAAAAAGT
**
14822895 ATTAAAAGAAAGT-AAAAT-AAAAAGT
1 ATTTTAAGAAAGTAAAAATGAAAAAGT
14822920 ATTTTAAGAA
1 ATTTTAAGAA
14822930 GATAAATAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
25 14 0.50
26 10 0.36
27 4 0.14
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (27 bp):
ATTTTAAGAAAGTAAAAATGAAAAAGT
Found at i:14837385 original size:26 final size:26
Alignment explanation
Indices: 14837356--14837414 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
14837346 GTGTACATTT
* *
14837356 TCTCAATTCAAGCATTCATCATTCAA
1 TCTCAATTCAAGCATTAAGCATTCAA
14837382 TCTCAATTCAAGCATTAAGCATTCAA
1 TCTCAATTCAAGCATTAAGCATTCAA
*
14837408 TGTCAAT
1 TCTCAAT
14837415 CAATTTGTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.34
Consensus pattern (26 bp):
TCTCAATTCAAGCATTAAGCATTCAA
Found at i:14839011 original size:24 final size:23
Alignment explanation
Indices: 14838936--14839026 Score: 137
Period size: 23 Copynumber: 3.9 Consensus size: 23
14838926 AGTTGATGGG
*
14838936 CAGTAAGCTCTAATGAGCTGAAA
1 CAGTAAGCTCTGATGAGCTGAAA
*
14838959 CAGTAAGCTTTGATGAGCTGAAA
1 CAGTAAGCTCTGATGAGCTGAAA
14838982 CAGTAAGCTCTGATGAGCTGAAAA
1 CAGTAAGCTCTGATGAGCTG-AAA
* *
14839006 CAGTAAGCTCTTACGAGCTGA
1 CAGTAAGCTCTGATGAGCTGA
14839027 TATATTGGTA
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
23 41 0.66
24 21 0.34
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (23 bp):
CAGTAAGCTCTGATGAGCTGAAA
Found at i:14864418 original size:24 final size:24
Alignment explanation
Indices: 14864391--14864461 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
14864381 CTAGATTTCC
** *
14864391 TCCCTTATCTGCTCCTAAGTCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
14864415 TCCCTTATCAACTCCAAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
14864439 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
14864462 CCTGACAGAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.25, C:0.38, G:0.03, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:14870725 original size:27 final size:26
Alignment explanation
Indices: 14870690--14870802 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 26
14870680 AGCATGGCTG
*
14870690 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
14870716 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
*
14870744 CCAGAACAGAAATATGTGGA-AGAGCCA
1 CCAGAACAGATA-ATGT-GACAGAGCCA
* * *
14870771 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
14870798 CCAGA
1 CCAGA
14870803 CGCTTCCTCC
Statistics
Matches: 73, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
26 7 0.10
27 48 0.66
28 18 0.25
ACGTcount: A:0.39, C:0.22, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:14870781 original size:54 final size:54
Alignment explanation
Indices: 14870690--14870802 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 54
14870680 AGCATGGCTG
* *
14870690 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* *
14870744 CCAGAACAGAAATATGTGGA-AGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGT-GACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
14870798 CCAGA
1 CCAGA
14870803 CGCTTCCTCC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
54 35 0.66
55 16 0.30
56 2 0.04
ACGTcount: A:0.39, C:0.22, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:14872246 original size:23 final size:24
Alignment explanation
Indices: 14872217--14872281 Score: 96
Period size: 24 Copynumber: 2.8 Consensus size: 24
14872207 CTAGATTTCC
**
14872217 TCCCTTATCTGCTCCTAA-TCATA
1 TCCCTTATCAACTCCTAAGTCATA
*
14872240 TCCCTTATCAACTCCTAAGTCCTA
1 TCCCTTATCAACTCCTAAGTCATA
14872264 TCCCTTATCAACTCCTAA
1 TCCCTTATCAACTCCTAA
14872282 ATCCTCTCCT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
23 16 0.42
24 22 0.58
ACGTcount: A:0.25, C:0.37, G:0.03, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAGTCATA
Found at i:14872754 original size:14 final size:15
Alignment explanation
Indices: 14872727--14872759 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14872717 TATGACCCAT
14872727 TCATTCCTTCATTAA
1 TCATTCCTTCATTAA
*
14872742 TCATTCC-TCATTAC
1 TCATTCCTTCATTAA
14872756 TCAT
1 TCAT
14872760 CATTCCTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.24, C:0.30, G:0.00, T:0.45
Consensus pattern (15 bp):
TCATTCCTTCATTAA
Found at i:14874833 original size:13 final size:13
Alignment explanation
Indices: 14874817--14874848 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14874807 CGCACACGGT
14874817 CGTGTCACACAGG
1 CGTGTCACACAGG
*
14874830 CGTGTCACACGGG
1 CGTGTCACACAGG
14874843 CGTGTC
1 CGTGTC
14874849 CCTTTCGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (13 bp):
CGTGTCACACAGG
Found at i:14881731 original size:22 final size:21
Alignment explanation
Indices: 14881706--14881746 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
14881696 TTTTAACGTG
14881706 TTAAATTTTAATTACTTTTATA
1 TTAAATTTTAATTA-TTTTATA
*
14881728 TTAAATTTTGATTATTTTA
1 TTAAATTTTAATTATTTTA
14881747 ATCATTTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TTAAATTTTAATTATTTTATA
Found at i:14884040 original size:54 final size:54
Alignment explanation
Indices: 14883976--14884084 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
14883966 TGGAAGTGAG
14883976 TGACTCATTTAAACTATTCGAGGTGACTAAGGATGCCTTGAGACTGAGATTATT
1 TGACTCATTTAAACTATTCGAGGTGACTAAGGATGCCTTGAGACTGAGATTATT
14884030 TGACTCATTTAAACTATTCGAGGTGACTAAGGATGCCTTGAGACTGAGATTATT
1 TGACTCATTTAAACTATTCGAGGTGACTAAGGATGCCTTGAGACTGAGATTATT
14884084 T
1 T
14884085 CCATACTTCT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (54 bp):
TGACTCATTTAAACTATTCGAGGTGACTAAGGATGCCTTGAGACTGAGATTATT
Found at i:14890297 original size:21 final size:20
Alignment explanation
Indices: 14890268--14890306 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14890258 CTCTTGAAAC
*
14890268 GGGCACATGCCCGTGTGGAA
1 GGGCACATGCCCATGTGGAA
14890288 GGGCAACATGCCCATGTGG
1 GGGC-ACATGCCCATGTGG
14890307 TCATCATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.21, C:0.26, G:0.38, T:0.15
Consensus pattern (20 bp):
GGGCACATGCCCATGTGGAA
Found at i:14892091 original size:30 final size:30
Alignment explanation
Indices: 14892055--14892111 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
14892045 TATAATTGGG
*
14892055 CAAAATGACCATTTTGCCCCTAGGCTTTCA
1 CAAAATGACCATTTTACCCCTAGGCTTTCA
*
14892085 CAAAATGACCATTTTACTCCTAGGCTT
1 CAAAATGACCATTTTACCCCTAGGCTT
14892112 GAAATTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (30 bp):
CAAAATGACCATTTTACCCCTAGGCTTTCA
Found at i:14894497 original size:46 final size:49
Alignment explanation
Indices: 14894197--14894520 Score: 217
Period size: 47 Copynumber: 6.8 Consensus size: 49
14894187 ATAAGGTATG
* * *
14894197 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAT-T-A
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TACATCTCA
* * * * ** *
14894245 A-G-TCAATGCCATGTCCAAGACATGGTCTTACA-TTGAT-TATCGAAATCG
1 ATGCT-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTA-C-ATCTCA
* * * * * *
14894293 AGGCCGACGCCATGTCCCAGACATGGTCCTACACTAGCTCTCACATATCC
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATCTCA
* * * * * *
14894343 ATGGTGATGCCATGTCCCAGCCATGGTCTTACACTAACACTTC-TAT-A
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCA
* * * * * * *
14894390 CATGCCGATGCCATATCCTAGACAT-GTCTTATACTGGCT-TACATCGCG
1 -ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCA
*
14894438 AGGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-C-TCTCA
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCA
*
14894483 ATGCTAATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGC
14894521 ATACAAATAA
Statistics
Matches: 210, Mismatches: 50, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
44 1 0.00
45 11 0.05
46 45 0.21
47 60 0.29
48 24 0.11
49 26 0.12
50 40 0.19
51 2 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (49 bp):
ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCA
Found at i:14897397 original size:46 final size:46
Alignment explanation
Indices: 14897347--14897475 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
14897337 TGGTTGAGCA
*
14897347 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
14897393 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
14897439 CCCGAGCTCGTTGAATTAAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14897476 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:14900429 original size:15 final size:15
Alignment explanation
Indices: 14900409--14900464 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
14900399 GTATCTTGGG
14900409 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
14900424 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
14900439 GTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
14900454 TTTCTTTATTC
1 TTTCTTTATTC
14900465 AGTTTCCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:14910208 original size:19 final size:19
Alignment explanation
Indices: 14910174--14910271 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
14910164 AGATTACAAG
14910174 ATCATATCTTTAAGATTGCAT
1 ATCATATC--TAAGATTGCAT
14910195 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14910214 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
14910231 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14910250 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14910269 ATC
1 ATC
14910272 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 50 0.67
21 8 0.11
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:14910238 original size:36 final size:37
Alignment explanation
Indices: 14910174--14910271 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
14910164 AGATTACAAG
14910174 ATCATATCTTTAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC--TAAGATTG-ATATCATATCTAAGATTGCAT
14910214 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
14910250 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
14910272 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 12 0.21
40 8 0.14
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:14911006 original size:87 final size:85
Alignment explanation
Indices: 14910688--14911169 Score: 288
Period size: 87 Copynumber: 5.5 Consensus size: 85
14910678 GACAATACAG
* ** *
14910688 AGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACA-CGTGAAAGCCAAATCTGCTATGTCTT
1 AGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGTCAAATCTGCTATGTCTT
* *
14910752 TGATTTGCTCCTTGGGAACACA
65 CGATTTGCTCCTT-GAAACACA
* * * *
14910774 AGGATGCCAAATCATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGT-A
1 A-GATGCCAAATCATCTTGGATCTGCTTCAGTATAAA-CATCTGAAAGTCAAATCTGCTATGTCT
* ***
14910837 TC--TGTT-CTCCGTCGAAA-TGG
64 TCGAT-TTGCTCC-TTGAAACACA
* * ** * *
14910857 AGATGCTAAATCTGTTATCTTGGATCTACTTTGGTGTAAGAACTTCTGAAAGTCAAATCTGCTAT
1 AGATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTAT
*
14910922 GTCTTCGATTTGTTCCTTGTAAACACA
60 GTCTTCGATTTGCTCCTTG-AAACACA
* * * * *
14910949 AGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACC
1 AG-ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGT-CT
* * ***
14911014 T-G--CT-CTCCGTCGAAA-TGG
64 TCGATTTGCTCC-TTGAAACACA
* * ** * * *
14911032 AGATGCCAGATTTGTTATCTTGGATCTGCTTTGGTGTGAGGACATCCGAAAGTCAAATCTGCTAT
1 AGATGCCA-A---ATCATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTAT
* *
14911097 GTCTTCAATTTGTTCCTTGTAAACACA
60 GTCTTCGATTTGCTCCTTG-AAACACA
*
14911124 AGAATGCCAAATCATCTTGGATCTGCTTTAGTATAAACATCT-AAAG
1 AG-ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAG
14911170 GTTAGACCTG
Statistics
Matches: 291, Mismatches: 71, Indels: 68
0.68 0.17 0.16
Matches are distributed among these distances:
82 16 0.05
83 4 0.01
84 14 0.05
85 6 0.02
86 44 0.15
87 78 0.27
88 48 0.16
89 41 0.14
90 7 0.02
91 13 0.04
92 5 0.02
93 15 0.05
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (85 bp):
AGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGTCTTC
GATTTGCTCCTTGAAACACA
Found at i:14911026 original size:175 final size:175
Alignment explanation
Indices: 14910728--14911310 Score: 909
Period size: 175 Copynumber: 3.3 Consensus size: 175
14910718 CGTAAACACG
* * * ** *
14910728 TGAAAGCCAAATCTGCTATGTCTTTGATTTGCTCCTTGGGAACACAAGGATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
14910793 GATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTCCGTCGAAATGG
66 GATCTGCTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGG
* * * * *
14910857 AGATGCTAAATCTGTTATCTTGGATCTACTTTGGTGTAAGAACTTC
130 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
14910903 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
14910968 GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
* *
14911033 GATGCCAGATTTGTTATCTTGGATCTGCTTTGGTGTGAGGACATC
131 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
* *
14911078 CGAAAGTCAAATCTGCTATGTCTTCAATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
14911143 GATCTGCTTTAGTATAAACATCTAAAGGTTAGACCTGCTATGTACCTACTCTCCGTCGAAATGGA
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
14911208 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
131 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
* * * * *
14911253 TGAAAATCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAAC-CAGGGATGCCAAATC
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATC
14911311 TGCTATCTTC
Statistics
Matches: 377, Mismatches: 30, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
174 13 0.03
175 361 0.96
176 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (175 bp):
TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
Found at i:14911062 original size:86 final size:85
Alignment explanation
Indices: 14910787--14911256 Score: 237
Period size: 88 Copynumber: 5.4 Consensus size: 85
14910777 ATGCCAAATC
* * * *
14910787 ATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTCCGTCG
1 ATCTTGGATCTGCTTTAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCG
* *
14910851 AAATGGAGATGCTAAATCTGTT
65 AAATGGAGATGCCAGAT-TGTT
* * * * * * * * * * *
14910873 ATCTTGGATCTACTTTGGTGTAAGAACTTCTGAAAGTCAAATCTGCTATGT-CTTCGATTTGTTC
1 ATCTTGGATCTGCTTTAGTAT-A-AACATCTGAAGGTTAGACCTGCTATGTACCT-G--CT-CTC
* *** * *
14910937 C-TTGTAAACACAAGAATGCCA-A--ATC
60 CGTCG-AAA-TGGAG-ATGCCAGATTGTT
*
14910962 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
1 ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
14911027 AATGGAGATGCCAGATTTGTT
66 AATGGAGATGCCAGA-TTGTT
* * * * * * * *
14911048 ATCTTGGATCTGCTTTGGTGTGAGGACATCCGAAAGTCAAATCTGCTATGT-CTTCAATTTG-T-
1 ATCTTGGATCTGCTTTAGTAT-A-AACATCTGAAGGTTAGACCTGCTATGTAC--C----TGCTC
* *** * *
14911110 TCC-TTGTAAACACAAGAATGCCA-A--ATC
58 TCCGTCG-AAA-TGGAG-ATGCCAGATTGTT
* *
14911137 ATCTTGGATCTGCTTTAGTATAAACATCTAAAGGTTAGACCTGCTATGTACCTACTCTCCGTCGA
1 ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
14911202 AATGGAGATGCCAGATCTGTT
66 AATGGAGATGCCAGAT-TGTT
* *
14911223 ATCTTGGATCTGCTTTGGTGTGAGAACATCTGAA
1 ATCTTGGATCTGCTTTAGTAT-A-AACATCTGAA
14911257 AATCAGATCT
Statistics
Matches: 277, Mismatches: 70, Indels: 72
0.66 0.17 0.17
Matches are distributed among these distances:
82 13 0.05
83 7 0.03
84 12 0.04
85 5 0.02
86 56 0.20
87 47 0.17
88 58 0.21
89 41 0.15
90 6 0.02
91 12 0.04
92 7 0.03
93 13 0.05
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (85 bp):
ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
AATGGAGATGCCAGATTGTT
Found at i:14911150 original size:89 final size:87
Alignment explanation
Indices: 14910690--14911310 Score: 254
Period size: 87 Copynumber: 7.1 Consensus size: 87
14910680 CAATACAGAG
* ** * *
14910690 ATGCCAAATCATCTTAGATCTGCTTCAGCGTA-AACA-CGTGAAAGCCAAATCTGCTATGTCTTT
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATC-TGAAAGTCAAATCTGCTATGTC-TT
* * ** *
14910753 GATTTGCTCCTTGGGAACACAAGG
64 CATTTGTTCCTTGTAAACACAAGA
** * * * * *
14910777 ATGCCAAATCATCTTGGATCTGC-TT-CAGTAAAATCATCTGAAGGTTAGATCTGCTATGT-ATC
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAA-CATCTGAAAGTCAAATCTGCTATGTCTTC
* * ***
14910839 -TGTT-CTCCGTCG-AAA-TGGAG-
65 AT-TTGTTCC-TTGTAAACACAAGA
* * *
14910859 ATGCTAAATCTGTTATCTTGGATCTACTTTGGTGTAAGAACTTCTGAAAGTCAAATCTGCTATGT
1 ATGCCAAATC----ATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAAATCTGCTATGT
14910924 CTTCGATTTGTTCCTTGTAAACACAAGA
61 CTTC-ATTTGTTCCTTGTAAACACAAGA
** * * * * *
14910952 ATGCCAAATCATCTTGGATCTGCTTCAGTATA-AACATCTGAAGGTTAGACCTGCTATGTAC--C
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATCTGAAAGTCAAATCTGCTATGT-CTTC
* ***
14911014 ---TGCTCTCCGTCG-AAA-TGGAG-
65 ATTTG-T-TCC-TTGTAAACACAAGA
* * * *
14911034 ATGCCAGATTTGTTATCTTGGATCTGCTTTGGTGTGAGGACATCCGAAAGTCAAATCTGCTATGT
1 ATGCCA-A---ATCATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAAATCTGCTATGT
14911099 CTTCAATTTGTTCCTTGTAAACACAAGA
61 CTTC-ATTTGTTCCTTGTAAACACAAGA
* * * * * *
14911127 ATGCCAAATCATCTTGGATCTGCTTTAGTATA-AACATCT-AAAGGTTAGACCTGCTATGTACCT
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATCTGAAA-GTCAAATCTGCTATGT-CTT
* * * ***
14911190 -A-CT-CTCCGTCG-AAA-TGGAG-
64 CATTTGTTCC-TTGTAAACACAAGA
* * *
14911209 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCTGAAAATCAGATCTGCTATGT
1 ATGCCAAATC----ATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAAATCTGCTATGT
* * *
14911274 CTTCGATTTGTTCCCTGTAAAC-CAGGG
61 CTTC-ATTTGTTCCTTGTAAACACAAGA
14911301 ATGCCAAATC
1 ATGCCAAATC
14911311 TGCTATCTTC
Statistics
Matches: 389, Mismatches: 90, Indels: 105
0.67 0.15 0.18
Matches are distributed among these distances:
82 26 0.07
83 8 0.02
84 19 0.05
85 13 0.03
86 58 0.15
87 88 0.23
88 70 0.18
89 47 0.12
90 8 0.02
91 20 0.05
92 15 0.04
93 17 0.04
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATCTGAAAGTCAAATCTGCTATGTCTTCA
TTTGTTCCTTGTAAACACAAGA
Found at i:14911443 original size:132 final size:132
Alignment explanation
Indices: 14911261--14911576 Score: 503
Period size: 132 Copynumber: 2.4 Consensus size: 132
14911251 TCTGAAAATC
* * *
14911261 AGATCTGCTATGTCTTCGATTTGTTCCCTGTAAAC-CAGGGATGCCAAATCTGCTATCTTCAACT
1 AGATCTGCTA--TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACT
* * * *
14911325 TGTTCCCTATAAACACAGGGATGCCATGTTAAAATCTTTGATCTGTTTTGCTGTAAGCACAGGA-
64 TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAG
14911389 ATGTCT
129 AT-T-T
14911395 -GATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTG
1 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTG
14911459 TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT
66 TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT
14911524 TT
131 TT
14911526 AGATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGCCAAATCT
1 AGATCTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCT
14911577 TGTTTCTTTG
Statistics
Matches: 171, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
131 22 0.13
132 109 0.64
133 40 0.23
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTG
TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT
TT
Found at i:14911450 original size:44 final size:44
Alignment explanation
Indices: 14911273--14911576 Score: 244
Period size: 44 Copynumber: 6.9 Consensus size: 44
14911263 ATCTGCTATG
* * *
14911273 TCTTCGATTTGTTCCCTGTAAAC-CAGGGATGCCAAATCTGCTA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
* ** **
14911316 TCTTC-AACTTGTTCCCTATAAACACAGGGATGCCATGT-TAAAA
1 TCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAATCTACTA
* ** * * * * ** *
14911359 TCTTTGATCTGTTTTGCTGTAAGCACAGGAATGTCTGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCTACTA
14911404 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
* **
14911448 TCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--ATGCTAAAA
1 TCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAAT-CTACTA
* * * ** * *
14911491 TCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT-TTAGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAACACAGG-GATGCCAAATCTACTA
14911536 TCTTCGATCTGTTTCCCTATAAACACAGGGATGCCAAATCT
1 TCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCT
14911577 TGTTTCTTTG
Statistics
Matches: 197, Mismatches: 51, Indels: 24
0.72 0.19 0.09
Matches are distributed among these distances:
42 3 0.02
43 39 0.20
44 105 0.53
45 48 0.24
46 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
Found at i:14911518 original size:88 final size:88
Alignment explanation
Indices: 14911403--14911571 Score: 218
Period size: 89 Copynumber: 1.9 Consensus size: 88
14911393 CTGATCTGCT
14911403 ATCTTCGATCTGTTCCCTATAAACACAGG-GATGCCAAATCTACTATCTTCAA-CT-TGTTCCCT
1 ATCTTCGATCTGTTCCCTATAAACACAGGAGAT-CCAAATCTACTATCTTCAATCTGT-TTCCCT
14911465 ATAAACACAGGGATGCCATGCTAAA
64 ATAAACACAGGGATGCCATGCTAAA
* * * ** * * *
14911490 ATCTTCGATCTGCTTCGCTGTAAGCACAGGAGATTTAGATCTGCTATCTTCGATCTGTTTCCCTA
1 ATCTTCGATCTG-TTCCCTATAAACACAGGAGATCCAAATCTACTATCTTCAATCTGTTTCCCTA
14911555 TAAACACAGGGATGCCA
65 TAAACACAGGGATGCCA
14911572 AATCTTGTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
87 12 0.17
88 28 0.40
89 29 0.41
90 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (88 bp):
ATCTTCGATCTGTTCCCTATAAACACAGGAGATCCAAATCTACTATCTTCAATCTGTTTCCCTAT
AAACACAGGGATGCCATGCTAAA
Found at i:14912471 original size:19 final size:18
Alignment explanation
Indices: 14912447--14912504 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 18
14912437 TTGGCCTCTC
14912447 CATTTTTGTTTTCTTTTTT
1 CATTTTT-TTTTCTTTTTT
14912466 CATTTTTTTTCTCTTTTTT
1 CATTTTTTTT-TCTTTTTT
*
14912485 CTTTTCTTTTTTCCTTTTTT
1 CATTT-TTTTTT-CTTTTTT
14912505 TTTTTGAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 3 0.09
19 20 0.57
20 12 0.34
ACGTcount: A:0.03, C:0.16, G:0.02, T:0.79
Consensus pattern (18 bp):
CATTTTTTTTTCTTTTTT
Found at i:14912475 original size:12 final size:11
Alignment explanation
Indices: 14912449--14912509 Score: 52
Period size: 12 Copynumber: 5.4 Consensus size: 11
14912439 GGCCTCTCCA
*
14912449 TTTTTGTTTTCT
1 TTTTTCTTTT-T
14912461 TTTTTCATTTTT
1 TTTTTC-TTTTT
*
14912473 TTTCTCTTTTT
1 TTTTTCTTTTT
14912484 TCTTTTCTTTTT
1 T-TTTTCTTTTT
**
14912496 TCCTT-TTTTT
1 TTTTTCTTTTT
14912506 TTTT
1 TTTT
14912510 GAAATAGAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
10 7 0.17
11 8 0.20
12 21 0.52
13 4 0.10
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.84
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:14915091 original size:38 final size:40
Alignment explanation
Indices: 14915049--14915175 Score: 136
Period size: 40 Copynumber: 3.2 Consensus size: 40
14915039 GCAGGTCTCT
* *
14915049 AGCCCGGATAGCATTCTAGCACGA-AG-CTAT-GATCTTTA
1 AGCCCGGATAACATTCCAGCA-GATAGCCTATGGATCTTTA
* * *
14915087 AGCCCGGATAACATTCCAGCATATAGCCTGTGGGTCTTTA
1 AGCCCGGATAACATTCCAGCAGATAGCCTATGGATCTTTA
** * *
14915127 AGCCCGGATAACATTCCAGCATTTAGCCTGTGGGTCTTT-
1 AGCCCGGATAACATTCCAGCAGATAGCCTATGGATCTTTA
14915166 AGCCCGGATA
1 AGCCCGGATA
14915176 CAAATTCCTC
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
37 1 0.01
38 21 0.26
39 13 0.16
40 45 0.56
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
AGCCCGGATAACATTCCAGCAGATAGCCTATGGATCTTTA
Found at i:14915183 original size:40 final size:40
Alignment explanation
Indices: 14915081--14915175 Score: 174
Period size: 40 Copynumber: 2.4 Consensus size: 40
14915071 GAAGCTATGA
14915081 TCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGGG
1 TCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGGG
*
14915121 TCTTTAAGCCCGGATAACATTCCAGCATTTAGCCTGTGGG
1 TCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGGG
14915161 TCTTT-AGCCCGGATA
1 TCTTTAAGCCCGGATA
14915176 CAAATTCCTC
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 10 0.19
40 44 0.81
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.29
Consensus pattern (40 bp):
TCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGGG
Found at i:14926921 original size:26 final size:26
Alignment explanation
Indices: 14926885--14926938 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
14926875 AGGTGTTGAA
14926885 AGTATGTAAGTTGGTATGATAATAAT
1 AGTATGTAAGTTGGTATGATAATAAT
14926911 AGTATGTAAGTTGGTATGATAATAAT
1 AGTATGTAAGTTGGTATGATAATAAT
14926937 AG
1 AG
14926939 AGCAATAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (26 bp):
AGTATGTAAGTTGGTATGATAATAAT
Found at i:14927445 original size:68 final size:66
Alignment explanation
Indices: 14927370--14927541 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
14927360 CATCATGTGT
* * * * *
14927370 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTTGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
14927433 TGTAG
62 TGTAG
* * *
14927438 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
14927503 AG
65 AG
* * * *
14927505 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
14927542 GGTGGTACTG
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
64 23 0.26
65 3 0.03
66 18 0.20
67 33 0.37
68 13 0.14
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:14932096 original size:27 final size:27
Alignment explanation
Indices: 14932062--14932128 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
14932052 AAATGACAGC
14932062 TTTGCCCTTATGTGGTAAGATGACTAT
1 TTTGCCCTTATGTGGTAAGATGACTAT
* * *
14932089 TTTTCCCTTATATGGTAAGATGACTGT
1 TTTGCCCTTATGTGGTAAGATGACTAT
14932116 TTTGCCC-TATGTG
1 TTTGCCCTTATGTG
14932129 ATGTATATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 5 0.14
27 30 0.86
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.43
Consensus pattern (27 bp):
TTTGCCCTTATGTGGTAAGATGACTAT
Found at i:14935711 original size:28 final size:27
Alignment explanation
Indices: 14935648--14935827 Score: 288
Period size: 28 Copynumber: 6.6 Consensus size: 27
14935638 ATATTAAGTC
* * *
14935648 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
14935675 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
14935703 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
14935730 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
14935758 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
14935786 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
14935813 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14935828 GCACAATTTA
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 81 0.55
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:14935732 original size:55 final size:55
Alignment explanation
Indices: 14935648--14935827 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
14935638 ATATTAAGTC
* * * *
14935648 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
14935703 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
14935758 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACT
14935813 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14935828 GCACAATTTA
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:14935786 original size:83 final size:82
Alignment explanation
Indices: 14935648--14935827 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
14935638 ATATTAAGTC
* *
14935648 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
14935713 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
* *
14935730 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
*
14935795 AGTGCTACATAGTCAATT
65 AGTGCTACATAGTCAACT
14935813 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14935828 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 20 0.22
83 72 0.78
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:14937674 original size:27 final size:25
Alignment explanation
Indices: 14937657--14937725 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 25
14937647 ATATTAAGTC
*
14937657 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATAT-ATCAA-T
*
14937684 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTATATA-TCAA-T
14937711 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14937726 GCACAATTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.03
27 37 0.97
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (25 bp):
CGCACACTTAGTGCTATATATCAAT
Found at i:14941531 original size:39 final size:39
Alignment explanation
Indices: 14941487--14941620 Score: 232
Period size: 39 Copynumber: 3.4 Consensus size: 39
14941477 ATTATATTAT
*
14941487 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
**
14941526 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
*
14941565 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
14941604 CAGCACGAAGCCTGCGG
1 CAGCACGAAGCCTGCGG
14941621 ACCCTAAGTC
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 91 1.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
Found at i:14941634 original size:39 final size:40
Alignment explanation
Indices: 14941487--14941677 Score: 223
Period size: 39 Copynumber: 4.9 Consensus size: 40
14941477 ATTATATTAT
* *
14941487 CAGCACAAAGCCTGCGGGACTTTAA-CCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTTAAGCCCGGATACATTTC
**
14941526 CAGCACGAAGCCTGCGGGA-CTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTTAAGCCCGGATACATTTC
*
14941565 CAGCACGAAGCCTGCGGGA-CTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTTAAGCCCGGATACATTTC
* * * *
14941604 CAGCACGAAGCCTGC-GGACCCTAAGTCCGGATATAATTC
1 CAGCACGAAGCCTGCGGGACCTTAAGCCCGGATACATTTC
* * *
14941643 CAGCAC-ATAGCCTGC-AGACCCTAAGTCCGGATACA
1 CAGCACGA-AGCCTGCGGGACCTTAAGCCCGGATACA
14941678 CATCAAATAT
Statistics
Matches: 137, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 6 0.04
39 131 0.96
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (40 bp):
CAGCACGAAGCCTGCGGGACCTTAAGCCCGGATACATTTC
Found at i:14945169 original size:4 final size:4
Alignment explanation
Indices: 14945160--14945190 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
14945150 TAGTTCCGTT
14945160 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
14945191 TTTTTTACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:14947966 original size:39 final size:39
Alignment explanation
Indices: 14947923--14948056 Score: 223
Period size: 39 Copynumber: 3.4 Consensus size: 39
14947913 ATTATATTAT
* *
14947923 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
14947962 CAGCACGAAGCTTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
14948001 CAGCACGAAGCTTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
14948040 CAGCACGAAGCCTGCGG
1 CAGCACGAAGCCTGCGG
14948057 ACCCTAAGTC
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:14948072 original size:39 final size:39
Alignment explanation
Indices: 14947923--14948103 Score: 181
Period size: 39 Copynumber: 4.6 Consensus size: 39
14947913 ATTATATTAT
* *
14947923 CAGCACAAAGCCTGCGGGACTTTAA-CCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGAC-CTAAGCCCGGATACATTTC
* * **
14947962 CAGCACGAAGCTTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
* * *
14948001 CAGCACGAAGCTTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
* * * *
14948040 CAGCACGAAGCCTGC-GGACCCTAAGTCTGGATATAATTC
1 CAGCACGAAGCCTGCGGGA-CCTAAGCCCGGATACATTTC
14948079 CAGCAC-ATAGCCTGC-GGACCCTAAG
1 CAGCACGA-AGCCTGCGGGA-CCTAAG
14948104 TTCAGATACA
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 6 0.05
39 121 0.95
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.20
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
Found at i:14948072 original size:78 final size:78
Alignment explanation
Indices: 14947923--14948095 Score: 222
Period size: 78 Copynumber: 2.2 Consensus size: 78
14947913 ATTATATTAT
* * **
14947923 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCTTGCGGGACTTTGGC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACCTAAGC
*
14947988 CCGGATACATTTC
66 CCGGATACAATTC
* * *
14948001 CAGCACGAAGCTTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGC-GGACCCTAAG
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGA-CCTAAG
* * *
14948065 TCTGGATATAATTC
65 CCCGGATACAATTC
*
14948079 CAGCACATAGCCTGCGG
1 CAGCACAAAGCCTGCGG
14948096 ACCCTAAGTT
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
77 3 0.04
78 77 0.96
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (78 bp):
CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACCTAAGC
CCGGATACAATTC
Found at i:14950362 original size:46 final size:46
Alignment explanation
Indices: 14950309--14950481 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
14950299 TGGTTGAGCA
14950309 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
14950355 TCTGAACTCGTTGAGTTCAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
14950400 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
14950448 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
14950482 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.57
47 26 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14950470 original size:93 final size:93
Alignment explanation
Indices: 14950306--14950476 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
14950296 GGATGGTTGA
* * *
14950306 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14950371 TCAGTCCGAGTTCGTGAAATGTAACTAG
66 TCAGTCCGAGTTCGTGAAATGTAACTAG
* *
14950399 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
14950464 TGAGTCCGAGTTC
66 TCAGTCCGAGTTC
14950477 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TCAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:14958316 original size:68 final size:64
Alignment explanation
Indices: 14958169--14958323 Score: 161
Period size: 68 Copynumber: 2.4 Consensus size: 64
14958159 TTCACCCGGA
* * *
14958169 ACCACGCATGTGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGT
1 ACCACACATGTGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGATGTACACATAGC
* * * * *
14958233 ATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTAC-ACATGATGTGCAC-
1 ACCACACATGTGACCTAGCTACAT-AT-A--TCTCGTAGCTCTCTTGT-CTACATGATGTACACA
14958296 TCAGC
61 T-AGC
*
14958301 ACCATACATGTGACCTAGCTACA
1 ACCACACATGTGACCTAGCTACA
14958324 CACTATCTGT
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
64 21 0.28
65 2 0.03
66 1 0.01
67 1 0.01
68 48 0.65
69 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (64 bp):
ACCACACATGTGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGATGTACACATAGC
Found at i:14959025 original size:30 final size:30
Alignment explanation
Indices: 14958991--14959051 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14958981 TCCTTAACTC
*
14958991 AAACTTTGGTAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
14959021 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
14959051 A
1 A
14959052 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:14962526 original size:56 final size:56
Alignment explanation
Indices: 14962433--14962654 Score: 248
Period size: 56 Copynumber: 4.0 Consensus size: 56
14962423 TCTTACATGT
* * * * * **
14962433 AATCACATACCGATGCCAACGTACTAGACATGGTCTTACTCGTGCACATATATCAG
1 AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAG
* *
14962489 AATCACATATCAATTCCAAAGTATTAAACGTGGTCTTACTCGCACACATATATCAG
1 AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAG
* * * *
14962545 AATCACATATCGATGCCAACGTATTAAACATGATCTTACTCGCACACATATATTAG
1 AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAG
* * ** * **
14962601 GATCGCATATTGATGCCAACA-TATTAAACATCGTCTTACTTTCACACATATATC
1 AATCACATATCAATGCCAA-AGTATTAAACATGGTCTTACTCGCACACATATATC
14962655 GATGCCATGG
Statistics
Matches: 141, Mismatches: 24, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
56 141 1.00
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (56 bp):
AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAG
Found at i:14962637 original size:112 final size:112
Alignment explanation
Indices: 14962433--14962654 Score: 284
Period size: 112 Copynumber: 2.0 Consensus size: 112
14962423 TCTTACATGT
* * **
14962433 AATCACATACCGATGCCAACGTACTAGACATGGTCTTACTCGTGCACATATATCAGAATCACATA
1 AATCACATACCGATGCCAACGTACTAAACATGATCTTACTCGCACACATATATCAGAATCACATA
* * *
14962498 TCAATTCCAAAGTATTAAACGTGGTCTTACTCGCACACATATATCAG
66 TCAATGCCAAAGTATTAAACATCGTCTTACTCGCACACATATATCAG
* * * * *
14962545 AATCACATATCGATGCCAACGTATTAAACATGATCTTACTCGCACACATATATTAGGATCGCATA
1 AATCACATACCGATGCCAACGTACTAAACATGATCTTACTCGCACACATATATCAGAATCACATA
** **
14962610 TTGATGCCAACA-TATTAAACATCGTCTTACTTTCACACATATATC
66 TCAATGCCAA-AGTATTAAACATCGTCTTACTCGCACACATATATC
14962655 GATGCCATGG
Statistics
Matches: 93, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
112 92 0.99
113 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (112 bp):
AATCACATACCGATGCCAACGTACTAAACATGATCTTACTCGCACACATATATCAGAATCACATA
TCAATGCCAAAGTATTAAACATCGTCTTACTCGCACACATATATCAG
Found at i:14966634 original size:39 final size:39
Alignment explanation
Indices: 14966460--14966617 Score: 262
Period size: 39 Copynumber: 4.1 Consensus size: 39
14966450 TGTGAATATA
*
14966460 TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
14966499 TATAAGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
14966538 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
14966577 TATATGCGAGAATTATATCCGGACTTTAGGTCCACAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
14966616 TA
1 TA
14966618 CGTGCTGGAC
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:14970155 original size:17 final size:19
Alignment explanation
Indices: 14970133--14970169 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
14970123 CACATTGAAG
14970133 TGTTTT-ATCGAAAA-CCT
1 TGTTTTCATCGAAAATCCT
*
14970150 TGTTTTCATTGAAAATCCT
1 TGTTTTCATCGAAAATCCT
14970169 T
1 T
14970170 CTTTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (19 bp):
TGTTTTCATCGAAAATCCT
Found at i:14972335 original size:40 final size:40
Alignment explanation
Indices: 14972290--14972441 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
14972280 ATAACCACAA
* * *
14972290 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
14972330 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
14972370 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
14972410 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
14972442 CATTCAAATG
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:14975162 original size:12 final size:12
Alignment explanation
Indices: 14975134--14975181 Score: 73
Period size: 12 Copynumber: 4.2 Consensus size: 12
14975124 ATACATAATT
14975134 TATAA-AAAATA
1 TATAATAAAATA
*
14975145 -AAAATAAAATA
1 TATAATAAAATA
14975156 TATAATAAAATA
1 TATAATAAAATA
14975168 TATAATAAAATA
1 TATAATAAAATA
14975180 TA
1 TA
14975182 ATTTATAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
10 3 0.09
11 6 0.18
12 24 0.73
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
TATAATAAAATA
Found at i:14977663 original size:29 final size:28
Alignment explanation
Indices: 14977597--14977690 Score: 134
Period size: 28 Copynumber: 3.3 Consensus size: 28
14977587 AAGTCTATAT
* *
14977597 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* * *
14977625 TCTTTCATATGGCCCATTAGGCCTAAATC
1 ACATTCATATGGCCCATTAGGCC-CAATC
14977654 ACATTCATATGGCCCATTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
14977682 ACATTCATA
1 ACATTCATA
14977691 GTCATGCAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 32 0.56
29 25 0.44
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.27
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:14986719 original size:29 final size:31
Alignment explanation
Indices: 14986670--14986728 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
14986660 AATGTTTATC
* *
14986670 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTGGAGATAG
14986699 TATTTATTATAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
14986729 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAG
Found at i:14989709 original size:44 final size:43
Alignment explanation
Indices: 14989661--14989823 Score: 120
Period size: 44 Copynumber: 3.8 Consensus size: 43
14989651 AAATGATTTG
**
14989661 CTGAAGCTTTATCGATAACGTTCACTTAGTGCCATCGCATTAAA
1 CTGAAGCTTTATCGATAACGCACACTTAGTGCCATC-CATTAAA
* * * * *
14989705 CTGAAAC-TCATTCGGTATCGCACACTTAGTGCCA--CA-TATAG
1 CTGAAGCTTTA-TCGATAACGCACACTTAGTGCCATCCATTA-AA
* * *
14989746 CTGAAGATATATCGATAACGCACACTTAGTGCCATCACATGAAA
1 CTGAAGCTTTATCGATAACGCACACTTAGTGCCATC-CATTAAA
* * * *
14989790 CTGAAAC-TCATTCGGTATCGCACACTTAGTGCCA
1 CTGAAGCTTTA-TCGATAACGCACACTTAGTGCCA
14989824 CATATAGCTG
Statistics
Matches: 90, Mismatches: 21, Indels: 16
0.71 0.17 0.13
Matches are distributed among these distances:
40 2 0.02
41 29 0.32
42 1 0.01
43 3 0.03
44 54 0.60
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
CTGAAGCTTTATCGATAACGCACACTTAGTGCCATCCATTAAA
Found at i:14989762 original size:85 final size:85
Alignment explanation
Indices: 14989660--14989836 Score: 300
Period size: 85 Copynumber: 2.1 Consensus size: 85
14989650 TAAATGATTT
* * ** * *
14989660 GCTGAAGCTTTATCGATAACGTTCACTTAGTGCCATCGCATTAAACTGAAACTCATTCGGTATCG
1 GCTGAAGATATATCGATAACGCACACTTAGTGCCATCACATGAAACTGAAACTCATTCGGTATCG
14989725 CACACTTAGTGCCACATATA
66 CACACTTAGTGCCACATATA
14989745 GCTGAAGATATATCGATAACGCACACTTAGTGCCATCACATGAAACTGAAACTCATTCGGTATCG
1 GCTGAAGATATATCGATAACGCACACTTAGTGCCATCACATGAAACTGAAACTCATTCGGTATCG
14989810 CACACTTAGTGCCACATATA
66 CACACTTAGTGCCACATATA
14989830 GCTGAAG
1 GCTGAAG
14989837 CTATTCTAAT
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (85 bp):
GCTGAAGATATATCGATAACGCACACTTAGTGCCATCACATGAAACTGAAACTCATTCGGTATCG
CACACTTAGTGCCACATATA
Found at i:14989768 original size:41 final size:42
Alignment explanation
Indices: 14989705--14989836 Score: 146
Period size: 41 Copynumber: 3.1 Consensus size: 42
14989695 TCGCATTAAA
* *
14989705 CTGAA-ACTCATTCGGTATCGCACACTTAGTGCCACATATAG
1 CTGAAGACTCATTCGATAACGCACACTTAGTGCCACATATAG
* *
14989746 CTGAAGA-T-ATATCGATAACGCACACTTAGTGCCATCACATGAAA
1 CTGAAGACTCAT-TCGATAACGCACACTTAGTGCCA-CATAT--AG
* *
14989790 CTGAA-ACTCATTCGGTATCGCACACTTAGTGCCACATATAG
1 CTGAAGACTCATTCGATAACGCACACTTAGTGCCACATATAG
14989831 CTGAAG
1 CTGAAG
14989837 CTATTCTAAT
Statistics
Matches: 75, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
40 2 0.03
41 33 0.44
42 5 0.07
43 5 0.07
44 28 0.37
45 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
CTGAAGACTCATTCGATAACGCACACTTAGTGCCACATATAG
Found at i:14994124 original size:28 final size:26
Alignment explanation
Indices: 14994087--14994152 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 26
14994077 ATAACAGTAA
14994087 ACGTGGCAAAGCCACGAGAGCAGTAATT
1 ACGTGGCAAAGCCAC--GAGCAGTAATT
*
14994115 ACGTGACAAAG---CGAGCAGTAATT
1 ACGTGGCAAAGCCACGAGCAGTAATT
14994138 ACGTGGCAAAGCCAC
1 ACGTGGCAAAGCCAC
14994153 TAATACAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
23 21 0.64
25 1 0.03
26 1 0.03
28 10 0.30
ACGTcount: A:0.36, C:0.23, G:0.27, T:0.14
Consensus pattern (26 bp):
ACGTGGCAAAGCCACGAGCAGTAATT
Found at i:15003449 original size:27 final size:27
Alignment explanation
Indices: 15003389--15003455 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
15003379 ATATATATAC
*
15003389 ATCAGATAAGGGCAAAACAATCATCTT
1 ATCATATAAGGGCAAAACAATCATCTT
* * *
15003416 A-CAATATAAGGGCAAAATAGTCATTTT
1 ATC-ATATAAGGGCAAAACAATCATCTT
15003443 ATCATATATAGGG
1 ATCATATA-AGGG
15003456 GGTCTAGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
26 1 0.03
27 27 0.82
28 5 0.15
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.27
Consensus pattern (27 bp):
ATCATATAAGGGCAAAACAATCATCTT
Found at i:15006706 original size:43 final size:42
Alignment explanation
Indices: 15006659--15006761 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 42
15006649 ATGTCGATAG
15006659 CCCAGCTATGGTCTTACACGAAATCAAATAAAGATGCAAATGT
1 CCCAGC-ATGGTCTTACACGAAATCAAATAAAGATGCAAATGT
* ** * **
15006702 CCCAGACATGGTCTTACACGTAATCTCATAATGATGCCGATGT
1 CCCAG-CATGGTCTTACACGAAATCAAATAAAGATGCAAATGT
*
15006745 CCCATACATGGTCTTAC
1 CCCA-GCATGGTCTTAC
15006762 TCATAATCAC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
43 50 0.98
44 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
CCCAGCATGGTCTTACACGAAATCAAATAAAGATGCAAATGT
Found at i:15011882 original size:14 final size:14
Alignment explanation
Indices: 15011850--15011893 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
15011840 TCATAACTTA
15011850 TATTATATACATAT
1 TATTATATACATAT
* *
15011864 AATTATATACATTT
1 TATTATATACATAT
15011878 TATTATTATAACATAT
1 TATTA-TAT-ACATAT
15011894 GTATATTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 16 0.67
15 3 0.12
16 5 0.21
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TATTATATACATAT
Found at i:15019614 original size:43 final size:43
Alignment explanation
Indices: 15019561--15019664 Score: 118
Period size: 43 Copynumber: 2.4 Consensus size: 43
15019551 ATGCTGATAG
* * *
15019561 CCCAGCTATGGTCTTACATGAAATCAAATAACGATGTCAATGT
1 CCCAGATATGGTCTTACACGAAATCAAATAACGATGCCAATGT
* * ** *
15019604 CCCATATATGGTCTTACACGTAATCTCATAATGATGCCAATGT
1 CCCAGATATGGTCTTACACGAAATCAAATAACGATGCCAATGT
* *
15019647 CCTAGACATGGTCTTACA
1 CCCAGATATGGTCTTACA
15019665 AATAATCACA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (43 bp):
CCCAGATATGGTCTTACACGAAATCAAATAACGATGCCAATGT
Found at i:15024735 original size:55 final size:55
Alignment explanation
Indices: 15024545--15024799 Score: 255
Period size: 55 Copynumber: 4.8 Consensus size: 55
15024535 ACACGGGTAC
* * * *
15024545 CTTACCATTGCCATGACTTGTCATGGCCTTACATGGTATCC--T---TTT-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTGCCTTTAGAAA
* *
15024594 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTGT-G-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTGCCTT-TAGAAA
* * *
15024647 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTGCCTT-TAGAAA
* * * *
15024702 CTTATCAATGTCATGTCTTGACATGGTCTTACATGATATCCTTT-CC-TTAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTGCCTTTAGAAA
* *
15024755 CCTTACCAATTGCCATGCCTTGGCATGGCCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
15024800 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 51 0.29
54 11 0.06
55 65 0.38
56 5 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (55 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTGCCTTTAGAAA
Found at i:15024736 original size:108 final size:110
Alignment explanation
Indices: 15024543--15024792 Score: 304
Period size: 108 Copynumber: 2.4 Consensus size: 110
15024533 ATACACGGGT
* * * * *
15024543 ACCTTACC-ATTGCCATGACTTGTCATGGCCTTACAT-GG---TAT-CCTT-TTGAAACTTACCA
1 ACCTCACCAATTGCCATGCCTTGGCATGGCCTTACATGGGACCTTTGCCTTATAGAAACTTACCA
* * *
15024601 TTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTT-GTGA
66 ATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAG-AA
* *
15024646 A-CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGAAACTTATCA
1 ACCTCACCAATTGCCATGCCTTGGCATGGCCTTACATGGGACCTTTGCCTTATAGAAACTTACCA
* *
15024709 ATGTCATGTCTTGACATGGTCTTACATGATATCCTTTCCTTAGAA
66 ATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAA
*
15024754 ACCTTACCAATTGCCATGCCTTGGCATGGCCTTACATGG
1 ACCTCACCAATTGCCATGCCTTGGCATGGCCTTACATGG
15024793 TATCCTTAAA
Statistics
Matches: 123, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
102 28 0.23
103 4 0.03
106 2 0.02
107 4 0.03
108 50 0.41
109 8 0.07
110 27 0.22
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
ACCTCACCAATTGCCATGCCTTGGCATGGCCTTACATGGGACCTTTGCCTTATAGAAACTTACCA
ATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAA
Found at i:15026520 original size:46 final size:45
Alignment explanation
Indices: 15026470--15026645 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
15026460 TGGTTGAGCA
15026470 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
15026516 TCCGAACTCGTTAAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
15026563 TCCGAGCTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
15026609 -CGCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15026646 CACTTATGTG
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:15026626 original size:93 final size:93
Alignment explanation
Indices: 15026467--15026637 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
15026457 GGATGGTTGA
* *
15026467 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTAAGT
15026532 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
15026560 GCATCCGAGCTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACG-CGCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTAAG
15026624 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
15026638 ACTTATGGCA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTAAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:15029559 original size:15 final size:15
Alignment explanation
Indices: 15029539--15029579 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
15029529 GTATCTTAGG
15029539 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
15029554 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
15029569 TTTCTTTATTC
1 TTTCTTTATTC
15029580 AGTTTCCTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.12, C:0.15, G:0.10, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:15032022 original size:46 final size:45
Alignment explanation
Indices: 15031972--15032146 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
15031962 TGGTTGAGCA
15031972 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
15032018 TCCGAACTCGTTCAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
15032065 TCCGAGCTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
15032111 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15032147 CGGGTTACAT
Statistics
Matches: 106, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 8 0.08
46 59 0.56
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:15032128 original size:93 final size:93
Alignment explanation
Indices: 15031969--15032139 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
15031959 GGATGGTTGA
* * *
15031969 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTCAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
15032034 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
15032062 GCATCCGAGCTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
15032127 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
15032140 CTTATGGCGG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:15035050 original size:15 final size:15
Alignment explanation
Indices: 15035030--15035085 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
15035020 GTATCTTAGG
15035030 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
15035045 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
15035060 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
15035075 TTTCTTTATTC
1 TTTCTTTATTC
15035086 AGTTTCCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:15044820 original size:19 final size:19
Alignment explanation
Indices: 15044786--15044883 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
15044776 AGATTACAAG
15044786 ATCATATCTTTAAGATTGCAT
1 ATCATATC--TAAGATTGCAT
15044807 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
15044826 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
15044843 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
15044862 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
15044881 ATC
1 ATC
15044884 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 50 0.67
21 8 0.11
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:15044850 original size:36 final size:37
Alignment explanation
Indices: 15044786--15044883 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
15044776 AGATTACAAG
15044786 ATCATATCTTTAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC--TAAGATTG-ATATCATATCTAAGATTGCAT
15044826 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
15044862 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
15044884 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 12 0.21
40 8 0.14
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:15045617 original size:87 final size:85
Alignment explanation
Indices: 15045299--15045780 Score: 288
Period size: 87 Copynumber: 5.5 Consensus size: 85
15045289 GACAATACAG
* ** *
15045299 AGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACA-CGTGAAAGCCAAATCTGCTATGTCTT
1 AGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGTCAAATCTGCTATGTCTT
* *
15045363 TGATTTGCTCCTTGGGAACACA
65 CGATTTGCTCCTT-GAAACACA
* * * *
15045385 AGGATGCCAAATCATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGT-A
1 A-GATGCCAAATCATCTTGGATCTGCTTCAGTATAAA-CATCTGAAAGTCAAATCTGCTATGTCT
* ***
15045448 TC--TGTT-CTCCGTCGAAA-TGG
64 TCGAT-TTGCTCC-TTGAAACACA
* * ** * *
15045468 AGATGCTAAATCTGTTATCTTGGATCTACTTTGGTGTAAGAACTTCTGAAAGTCAAATCTGCTAT
1 AGATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTAT
*
15045533 GTCTTCGATTTGTTCCTTGTAAACACA
60 GTCTTCGATTTGCTCCTTG-AAACACA
* * * * *
15045560 AGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACC
1 AG-ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGT-CT
* * ***
15045625 T-G--CT-CTCCGTCGAAA-TGG
64 TCGATTTGCTCC-TTGAAACACA
* * ** * * *
15045643 AGATGCCAGATTTGTTATCTTGGATCTGCTTTGGTGTGAGGACATCCGAAAGTCAAATCTGCTAT
1 AGATGCCA-A---ATCATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTAT
* *
15045708 GTCTTCAATTTGTTCCTTGTAAACACA
60 GTCTTCGATTTGCTCCTTG-AAACACA
*
15045735 AGAATGCCAAATCATCTTGGATCTGCTTTAGTATAAACATCT-AAAG
1 AG-ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAG
15045781 GTTAGACCTG
Statistics
Matches: 291, Mismatches: 71, Indels: 68
0.68 0.17 0.16
Matches are distributed among these distances:
82 16 0.05
83 4 0.01
84 14 0.05
85 6 0.02
86 44 0.15
87 78 0.27
88 48 0.16
89 41 0.14
90 7 0.02
91 13 0.04
92 5 0.02
93 15 0.05
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (85 bp):
AGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGTCTTC
GATTTGCTCCTTGAAACACA
Found at i:15045637 original size:175 final size:175
Alignment explanation
Indices: 15045339--15045921 Score: 909
Period size: 175 Copynumber: 3.3 Consensus size: 175
15045329 CGTAAACACG
* * * ** *
15045339 TGAAAGCCAAATCTGCTATGTCTTTGATTTGCTCCTTGGGAACACAAGGATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
15045404 GATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTCCGTCGAAATGG
66 GATCTGCTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGG
* * * * *
15045468 AGATGCTAAATCTGTTATCTTGGATCTACTTTGGTGTAAGAACTTC
130 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
15045514 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
15045579 GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
* *
15045644 GATGCCAGATTTGTTATCTTGGATCTGCTTTGGTGTGAGGACATC
131 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
* *
15045689 CGAAAGTCAAATCTGCTATGTCTTCAATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
15045754 GATCTGCTTTAGTATAAACATCTAAAGGTTAGACCTGCTATGTACCTACTCTCCGTCGAAATGGA
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
15045819 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
131 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
* * * * *
15045864 TGAAAATCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAAC-CAGGGATGCCAAATC
1 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATC
15045922 TGCTATCTTC
Statistics
Matches: 377, Mismatches: 30, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
174 13 0.03
175 361 0.96
176 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (175 bp):
TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
GATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC
Found at i:15045673 original size:86 final size:85
Alignment explanation
Indices: 15045398--15045867 Score: 237
Period size: 88 Copynumber: 5.4 Consensus size: 85
15045388 ATGCCAAATC
* * * *
15045398 ATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGTTCTCCGTCG
1 ATCTTGGATCTGCTTTAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCG
* *
15045462 AAATGGAGATGCTAAATCTGTT
65 AAATGGAGATGCCAGAT-TGTT
* * * * * * * * * * *
15045484 ATCTTGGATCTACTTTGGTGTAAGAACTTCTGAAAGTCAAATCTGCTATGT-CTTCGATTTGTTC
1 ATCTTGGATCTGCTTTAGTAT-A-AACATCTGAAGGTTAGACCTGCTATGTACCT-G--CT-CTC
* *** * *
15045548 C-TTGTAAACACAAGAATGCCA-A--ATC
60 CGTCG-AAA-TGGAG-ATGCCAGATTGTT
*
15045573 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
1 ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
15045638 AATGGAGATGCCAGATTTGTT
66 AATGGAGATGCCAGA-TTGTT
* * * * * * * *
15045659 ATCTTGGATCTGCTTTGGTGTGAGGACATCCGAAAGTCAAATCTGCTATGT-CTTCAATTTG-T-
1 ATCTTGGATCTGCTTTAGTAT-A-AACATCTGAAGGTTAGACCTGCTATGTAC--C----TGCTC
* *** * *
15045721 TCC-TTGTAAACACAAGAATGCCA-A--ATC
58 TCCGTCG-AAA-TGGAG-ATGCCAGATTGTT
* *
15045748 ATCTTGGATCTGCTTTAGTATAAACATCTAAAGGTTAGACCTGCTATGTACCTACTCTCCGTCGA
1 ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
15045813 AATGGAGATGCCAGATCTGTT
66 AATGGAGATGCCAGAT-TGTT
* *
15045834 ATCTTGGATCTGCTTTGGTGTGAGAACATCTGAA
1 ATCTTGGATCTGCTTTAGTAT-A-AACATCTGAA
15045868 AATCAGATCT
Statistics
Matches: 277, Mismatches: 70, Indels: 72
0.66 0.17 0.17
Matches are distributed among these distances:
82 13 0.05
83 7 0.03
84 12 0.04
85 5 0.02
86 56 0.20
87 47 0.17
88 58 0.21
89 41 0.15
90 6 0.02
91 12 0.04
92 7 0.03
93 13 0.05
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (85 bp):
ATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
AATGGAGATGCCAGATTGTT
Found at i:15045761 original size:89 final size:87
Alignment explanation
Indices: 15045301--15045921 Score: 254
Period size: 87 Copynumber: 7.1 Consensus size: 87
15045291 CAATACAGAG
* ** * *
15045301 ATGCCAAATCATCTTAGATCTGCTTCAGCGTA-AACA-CGTGAAAGCCAAATCTGCTATGTCTTT
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATC-TGAAAGTCAAATCTGCTATGTC-TT
* * ** *
15045364 GATTTGCTCCTTGGGAACACAAGG
64 CATTTGTTCCTTGTAAACACAAGA
** * * * * *
15045388 ATGCCAAATCATCTTGGATCTGC-TT-CAGTAAAATCATCTGAAGGTTAGATCTGCTATGT-ATC
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAA-CATCTGAAAGTCAAATCTGCTATGTCTTC
* * ***
15045450 -TGTT-CTCCGTCG-AAA-TGGAG-
65 AT-TTGTTCC-TTGTAAACACAAGA
* * *
15045470 ATGCTAAATCTGTTATCTTGGATCTACTTTGGTGTAAGAACTTCTGAAAGTCAAATCTGCTATGT
1 ATGCCAAATC----ATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAAATCTGCTATGT
15045535 CTTCGATTTGTTCCTTGTAAACACAAGA
61 CTTC-ATTTGTTCCTTGTAAACACAAGA
** * * * * *
15045563 ATGCCAAATCATCTTGGATCTGCTTCAGTATA-AACATCTGAAGGTTAGACCTGCTATGTAC--C
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATCTGAAAGTCAAATCTGCTATGT-CTTC
* ***
15045625 ---TGCTCTCCGTCG-AAA-TGGAG-
65 ATTTG-T-TCC-TTGTAAACACAAGA
* * * *
15045645 ATGCCAGATTTGTTATCTTGGATCTGCTTTGGTGTGAGGACATCCGAAAGTCAAATCTGCTATGT
1 ATGCCA-A---ATCATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAAATCTGCTATGT
15045710 CTTCAATTTGTTCCTTGTAAACACAAGA
61 CTTC-ATTTGTTCCTTGTAAACACAAGA
* * * * * *
15045738 ATGCCAAATCATCTTGGATCTGCTTTAGTATA-AACATCT-AAAGGTTAGACCTGCTATGTACCT
1 ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATCTGAAA-GTCAAATCTGCTATGT-CTT
* * * ***
15045801 -A-CT-CTCCGTCG-AAA-TGGAG-
64 CATTTGTTCC-TTGTAAACACAAGA
* * *
15045820 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCTGAAAATCAGATCTGCTATGT
1 ATGCCAAATC----ATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAAATCTGCTATGT
* * *
15045885 CTTCGATTTGTTCCCTGTAAAC-CAGGG
61 CTTC-ATTTGTTCCTTGTAAACACAAGA
15045912 ATGCCAAATC
1 ATGCCAAATC
15045922 TGCTATCTTC
Statistics
Matches: 389, Mismatches: 90, Indels: 105
0.67 0.15 0.18
Matches are distributed among these distances:
82 26 0.07
83 8 0.02
84 19 0.05
85 13 0.03
86 58 0.15
87 88 0.23
88 70 0.18
89 47 0.12
90 8 0.02
91 20 0.05
92 15 0.04
93 17 0.04
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGATCTGCTTTGGTGTAGAACATCTGAAAGTCAAATCTGCTATGTCTTCA
TTTGTTCCTTGTAAACACAAGA
Found at i:15046054 original size:132 final size:132
Alignment explanation
Indices: 15045872--15046187 Score: 503
Period size: 132 Copynumber: 2.4 Consensus size: 132
15045862 TCTGAAAATC
* * *
15045872 AGATCTGCTATGTCTTCGATTTGTTCCCTGTAAAC-CAGGGATGCCAAATCTGCTATCTTCAACT
1 AGATCTGCTA--TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACT
* * * *
15045936 TGTTCCCTATAAACACAGGGATGCCATGTTAAAATCTTTGATCTGTTTTGCTGTAAGCACAGGA-
64 TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAG
15046000 ATGTCT
129 AT-T-T
15046006 -GATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTG
1 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTG
15046070 TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT
66 TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT
15046135 TT
131 TT
15046137 AGATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGCCAAATCT
1 AGATCTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCT
15046188 TGTTTCTTTG
Statistics
Matches: 171, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
131 22 0.13
132 109 0.64
133 40 0.23
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTG
TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT
TT
Found at i:15046061 original size:44 final size:44
Alignment explanation
Indices: 15045884--15046187 Score: 244
Period size: 44 Copynumber: 6.9 Consensus size: 44
15045874 ATCTGCTATG
* * *
15045884 TCTTCGATTTGTTCCCTGTAAAC-CAGGGATGCCAAATCTGCTA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
* ** **
15045927 TCTTC-AACTTGTTCCCTATAAACACAGGGATGCCATGT-TAAAA
1 TCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAATCTACTA
* ** * * * * ** *
15045970 TCTTTGATCTGTTTTGCTGTAAGCACAGGAATGTCTGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCTACTA
15046015 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
* **
15046059 TCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--ATGCTAAAA
1 TCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAAT-CTACTA
* * * ** * *
15046102 TCTTCGATCTGCTTCGCTGTAAGCACAGGAGAT-TTAGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAACACAGG-GATGCCAAATCTACTA
15046147 TCTTCGATCTGTTTCCCTATAAACACAGGGATGCCAAATCT
1 TCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCT
15046188 TGTTTCTTTG
Statistics
Matches: 197, Mismatches: 51, Indels: 24
0.72 0.19 0.09
Matches are distributed among these distances:
42 3 0.02
43 39 0.20
44 105 0.53
45 48 0.24
46 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTA
Found at i:15046129 original size:88 final size:88
Alignment explanation
Indices: 15046014--15046182 Score: 218
Period size: 89 Copynumber: 1.9 Consensus size: 88
15046004 CTGATCTGCT
15046014 ATCTTCGATCTGTTCCCTATAAACACAGG-GATGCCAAATCTACTATCTTCAA-CT-TGTTCCCT
1 ATCTTCGATCTGTTCCCTATAAACACAGGAGAT-CCAAATCTACTATCTTCAATCTGT-TTCCCT
15046076 ATAAACACAGGGATGCCATGCTAAA
64 ATAAACACAGGGATGCCATGCTAAA
* * * ** * * *
15046101 ATCTTCGATCTGCTTCGCTGTAAGCACAGGAGATTTAGATCTGCTATCTTCGATCTGTTTCCCTA
1 ATCTTCGATCTG-TTCCCTATAAACACAGGAGATCCAAATCTACTATCTTCAATCTGTTTCCCTA
15046166 TAAACACAGGGATGCCA
65 TAAACACAGGGATGCCA
15046183 AATCTTGTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
87 12 0.17
88 28 0.40
89 29 0.41
90 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (88 bp):
ATCTTCGATCTGTTCCCTATAAACACAGGAGATCCAAATCTACTATCTTCAATCTGTTTCCCTAT
AAACACAGGGATGCCATGCTAAA
Found at i:15047095 original size:18 final size:18
Alignment explanation
Indices: 15047072--15047107 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
15047062 TTGGCCTCTC
15047072 CATTTTTGTTT-TCTTTTT
1 CATTTTT-TTTCTCTTTTT
15047090 CATTTTTTTTCTCTTTTT
1 CATTTTTTTTCTCTTTTT
15047108 TCTTTTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.06, C:0.14, G:0.03, T:0.78
Consensus pattern (18 bp):
CATTTTTTTTCTCTTTTT
Found at i:15047116 original size:12 final size:12
Alignment explanation
Indices: 15047080--15047132 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
15047070 TCCATTTTTG
15047080 TTTTCTTTTTCATT
1 TTTTC-TTTTC-TT
*
15047094 TTTT-TTCTCTT
1 TTTTCTTTTCTT
15047105 TTTTCTTTTCTT
1 TTTTCTTTTCTT
15047117 TTTTCCTTTT-TT
1 TTTT-CTTTTCTT
15047129 TTTT
1 TTTT
15047133 GAAATAGAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 6 0.17
12 20 0.57
13 5 0.14
14 4 0.11
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:15047118 original size:21 final size:19
Alignment explanation
Indices: 15047094--15047132 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 19
15047084 CTTTTTCATT
15047094 TTTTTTCTCTTTTTTCTTTTC
1 TTTTTTC-CTTTTTT-TTTTC
15047115 TTTTTTCCTTTTTTTTTT
1 TTTTTTCCTTTTTTTTTT
15047133 GAAATAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 7 0.39
21 7 0.39
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTTTTCCTTTTTTTTTTC
Found at i:15049837 original size:40 final size:40
Alignment explanation
Indices: 15049734--15049830 Score: 194
Period size: 40 Copynumber: 2.4 Consensus size: 40
15049724 GAAGCTATGA
15049734 GTCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGG
1 GTCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGG
15049774 GTCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGG
1 GTCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGG
15049814 GTCTTTAAGCCCGGATA
1 GTCTTTAAGCCCGGATA
15049831 CAATTCCTCA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (40 bp):
GTCTTTAAGCCCGGATAACATTCCAGCATATAGCCTGTGG
Done.