Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 53 of 333
Found at i:15341889 original size:156 final size:155
Alignment explanation
Indices: 15341645--15341938 Score: 385
Period size: 156 Copynumber: 1.9 Consensus size: 155
15341635 TATTTTGCTA
* * * *** *
15341645 ACAGCGCATCCTACTTGAAGAGTTTTTCAACCCTAACTATCAGATTTCCCGTGAATCCTGAGATA
1 ACAGCGCATCCTACTTGAACAGTTTTTCAACCCCAACTATAAGATTTCCCAAAAATCCCGAGATA
* * * *
15341710 TTTTTTCAAAACCATCTTCTCAAAATTATTTTTTTAGAACCAATAGTACAAAAAAAGTGT-TCAG
66 TTTTTTCAAAACCATCTTCTCAAAATTA-TTTTTCAAAACCAACAGTACAAAAAAAGCGTCT-AG
15341774 CTGGAAGCTTGTTTAGTACTTTTACTG
129 CTGGAAGCTTGTTTAGTACTTTTACTG
* * *
15341801 ACAGTGCATCCTACTTGAACTGTTTTTCAACCCCAACTATAAGATTTCCCAAAAATCCCGGGATA
1 ACAGCGCATCCTACTTGAACAGTTTTTCAACCCCAACTATAAGATTTCCCAAAAATCCCGAGATA
* * * *
15341866 GTTTTTT-AGAACTATCTTTTCAAAATTATTTTTCAAAATCAACAGTACAAAAAAAGCGTCTAGC
66 -TTTTTTCAAAACCATCTTCTCAAAATTATTTTTCAAAACCAACAGTACAAAAAAAGCGTCTAGC
15341930 TGGAAGCTT
130 TGGAAGCTT
15341939 TTTCTATACA
Statistics
Matches: 118, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
155 38 0.32
156 74 0.63
157 6 0.05
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (155 bp):
ACAGCGCATCCTACTTGAACAGTTTTTCAACCCCAACTATAAGATTTCCCAAAAATCCCGAGATA
TTTTTTCAAAACCATCTTCTCAAAATTATTTTTCAAAACCAACAGTACAAAAAAAGCGTCTAGCT
GGAAGCTTGTTTAGTACTTTTACTG
Found at i:15342152 original size:28 final size:29
Alignment explanation
Indices: 15342112--15342190 Score: 126
Period size: 28 Copynumber: 2.8 Consensus size: 29
15342102 CCCTAGACTC
*
15342112 TAAACCTTAATTTATTTATTTTTAAAA-A
1 TAAACCCTAATTTATTTATTTTTAAAACA
15342140 TAAACCCTAATTTATTTATTTTTAAAACCA
1 TAAACCCTAATTTATTTATTTTTAAAA-CA
15342170 TAAACCCTAATTTATTT-TTTT
1 TAAACCCTAATTTATTTATTTT
15342191 CCAAAACCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
28 26 0.54
29 4 0.08
30 18 0.38
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (29 bp):
TAAACCCTAATTTATTTATTTTTAAAACA
Found at i:15342175 original size:30 final size:30
Alignment explanation
Indices: 15342112--15342210 Score: 132
Period size: 30 Copynumber: 3.4 Consensus size: 30
15342102 CCCTAGACTC
*
15342112 TAAACCTTAATTTATTTATTTTTAAAA--A
1 TAAACCCTAATTTATTTATTTTTAAAACCA
15342140 TAAACCCTAATTTATTTATTTTTAAAACCA
1 TAAACCCTAATTTATTTATTTTTAAAACCA
* *
15342170 TAAACCCTAATTTATTT-TTTTCCAAAACCT
1 TAAACCCTAATTTATTTATTTT-TAAAACCA
*
15342200 TAAGCCCTAAT
1 TAAACCCTAAT
15342211 ATGCAAATAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
28 26 0.41
29 4 0.06
30 34 0.53
ACGTcount: A:0.38, C:0.17, G:0.01, T:0.43
Consensus pattern (30 bp):
TAAACCCTAATTTATTTATTTTTAAAACCA
Found at i:15352454 original size:23 final size:23
Alignment explanation
Indices: 15352428--15352471 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
15352418 ATTAGAATTG
15352428 ATTATATAAATTA-TTTAATTAGA
1 ATTAT-TAAATTATTTTAATTAGA
*
15352451 ATTATTTAATTATTTTAATTA
1 ATTATTAAATTATTTTAATTA
15352472 ATAATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
ATTATTAAATTATTTTAATTAGA
Found at i:15352455 original size:14 final size:14
Alignment explanation
Indices: 15352436--15352462 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15352426 TGATTATATA
15352436 AATTATTTAATTAG
1 AATTATTTAATTAG
15352450 AATTATTTAATTA
1 AATTATTTAATTA
15352463 TTTTAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (14 bp):
AATTATTTAATTAG
Found at i:15358499 original size:50 final size:51
Alignment explanation
Indices: 15358422--15358543 Score: 194
Period size: 50 Copynumber: 2.4 Consensus size: 51
15358412 GACCATGGTA
15358422 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAA-TG
*
15358473 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
* *
15358523 ACAAGTGAAAAGTGGTAGCTT
1 ACAAGTGATAAGTGATAGCTT
15358544 TAGCTACCTG
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
50 45 0.68
51 21 0.32
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
Found at i:15358564 original size:31 final size:31
Alignment explanation
Indices: 15358526--15358704 Score: 254
Period size: 31 Copynumber: 5.8 Consensus size: 31
15358516 ACAAATGACA
**
15358526 AGTGAAAAGTGGTAGCTTTAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
15358557 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
15358588 AGTGAAAATTGGTAG-TTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
* *
15358619 AGTGAAAAGTGGTAACTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
15358650 AGTGAAAAGTGGTAGCTCCGGCTA-CTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
15358680 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
15358705 AAGTGACAAG
Statistics
Matches: 133, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
30 30 0.23
31 102 0.77
32 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:15358799 original size:47 final size:46
Alignment explanation
Indices: 15358729--15358893 Score: 169
Period size: 47 Copynumber: 3.7 Consensus size: 46
15358719 AAGTGATTTT
* *
15358729 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
15358775 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
15358822 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * * *
15358864 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
15358894 ATTATGTGAA
Statistics
Matches: 106, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
41 7 0.07
42 31 0.29
46 27 0.25
47 41 0.39
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:15358881 original size:42 final size:43
Alignment explanation
Indices: 15358823--15358937 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
15358813 TATGTGATTC
*
15358823 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
15358865 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
15358907 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
15358938 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:15369356 original size:55 final size:55
Alignment explanation
Indices: 15369242--15369360 Score: 170
Period size: 55 Copynumber: 2.2 Consensus size: 55
15369232 CGTTTGGTAG
* *
15369242 ACCCGTGGTTGAAACTGAGAAACTAGCACGGGCATGAGACACACCTGTGTGGTAG
1 ACCCGTGGTTGAAACTGAGAAACTAGCACGGGCATGAGACACACCTGTGTGCTAC
* *
15369297 ACCCGTGGTTGAAACTGAGAAACTAGCACGGGCGTGAGACAC-GCTCGTGT-CTACC
1 ACCCGTGGTTGAAACTGAGAAACTAGCACGGGCATGAGACACACCT-GTGTGCTA-C
15369352 ACCCGTGGT
1 ACCCGTGGT
15369361 CGAACCTATT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
54 4 0.07
55 54 0.93
ACGTcount: A:0.26, C:0.25, G:0.30, T:0.18
Consensus pattern (55 bp):
ACCCGTGGTTGAAACTGAGAAACTAGCACGGGCATGAGACACACCTGTGTGCTAC
Found at i:15370701 original size:27 final size:26
Alignment explanation
Indices: 15370653--15370705 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
15370643 GCGAGGCTGC
*
15370653 CAGATATTGTGACGAAGTCACCAGAT
1 CAGATATTGTGACGAAGCCACCAGAT
* *
15370679 CAGATATATGTGGCGAGGCCACCAGAT
1 CAGATAT-TGTGACGAAGCCACCAGAT
15370706 TGCAGCGAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAT
Found at i:15391906 original size:15 final size:16
Alignment explanation
Indices: 15391886--15391930 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
15391876 AATTGGTTGA
15391886 GAAAATT-ATTTAATT
1 GAAAATTAATTTAATT
*
15391901 GAAAATTTAATTTAGTT
1 GAAAA-TTAATTTAATT
15391918 -AAAATTAATTTAA
1 GAAAATTAATTTAA
15391931 AACAAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 13 0.50
16 6 0.23
17 7 0.27
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (16 bp):
GAAAATTAATTTAATT
Found at i:15394186 original size:40 final size:40
Alignment explanation
Indices: 15394090--15394233 Score: 177
Period size: 40 Copynumber: 3.5 Consensus size: 40
15394080 TATTCGGATG
15394090 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
* **
15394133 ATACCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
*
15394173 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTGCT
*
15394213 ATATCC-GGCTAATTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
15394234 ATACTTGGGT
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
39 16 0.18
40 42 0.47
41 2 0.02
43 29 0.33
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:15397138 original size:24 final size:22
Alignment explanation
Indices: 15397089--15397140 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 22
15397079 AATGCTAAAT
* *
15397089 ATATATAAAATAAATACATAAT
1 ATATATAAAATAAATACACAAC
*
15397111 ATATATAAAATGAACATATACAAC
1 ATATATAAAAT-AA-ATACACAAC
15397135 ATATAT
1 ATATAT
15397141 TGGAAATACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 11 0.44
23 2 0.08
24 12 0.48
ACGTcount: A:0.60, C:0.08, G:0.02, T:0.31
Consensus pattern (22 bp):
ATATATAAAATAAATACACAAC
Found at i:15397318 original size:21 final size:21
Alignment explanation
Indices: 15397288--15397341 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
15397278 ATAACACTGC
15397288 ATAAACATATACATATATATA
1 ATAAACATATACATATATATA
* * *
15397309 TTAAAGATATATATATATATA
1 ATAAACATATACATATATATA
*
15397330 ATAAATATATAC
1 ATAAACATATAC
15397342 TAATAATAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (21 bp):
ATAAACATATACATATATATA
Found at i:15397337 original size:15 final size:16
Alignment explanation
Indices: 15397319--15397365 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 16
15397309 TTAAAGATAT
15397319 ATATATA-TATAATAA
1 ATATATACTATAATAA
15397334 ATATATACTAATAATAA
1 ATATATACT-ATAATAA
* *
15397351 TTAT-TATTATAATAA
1 ATATATACTATAATAA
15397366 TAAAAAGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 14 0.50
16 4 0.14
17 10 0.36
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATATACTATAATAA
Found at i:15397579 original size:14 final size:15
Alignment explanation
Indices: 15397546--15397580 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
15397536 TATAATCGGG
*
15397546 ATAAAAATAGATATC
1 ATAATAATAGATATC
15397561 ATAATAATAGATA-C
1 ATAATAATAGATATC
15397575 ATAATA
1 ATAATA
15397581 TATAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (15 bp):
ATAATAATAGATATC
Found at i:15397740 original size:23 final size:25
Alignment explanation
Indices: 15397706--15397785 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 25
15397696 TACAATATAG
* *
15397706 TATTAGAA-ATATACATAC-AATAG
1 TATTAAAAGATATACATACTAATAA
*
15397729 TA-TAAAAGATATATA-ACTAATAA
1 TATTAAAAGATATACATACTAATAA
* *
15397752 TATTAAAATATATACATAATAATATA
1 TATTAAAAGATATACATACTAATA-A
15397778 TATATAAA
1 TAT-TAAA
15397786 TATAATATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
22 6 0.13
23 14 0.31
24 11 0.24
25 6 0.13
26 4 0.09
27 4 0.09
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (25 bp):
TATTAAAAGATATACATACTAATAA
Found at i:15397764 original size:22 final size:22
Alignment explanation
Indices: 15397706--15397805 Score: 70
Period size: 22 Copynumber: 4.6 Consensus size: 22
15397696 TACAATATAG
* *
15397706 TATTAGAAATATACATAC-AATAG
1 TATTA-AAATATATA-ACTAATAA
*
15397729 TATAAAAGATATATAACTAATAA
1 TATTAAA-ATATATAACTAATAA
15397752 TATTAAAATATAT-ACATAATAA
1 TATTAAAATATATAAC-TAATAA
*
15397774 TA-T---ATATATAAAT-ATAA
1 TATTAAAATATATAACTAATAA
15397791 TATTAAAAATATATA
1 TATT-AAAATATATA
15397806 CATAACATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
17 6 0.10
18 8 0.13
19 1 0.02
21 3 0.05
22 25 0.40
23 20 0.32
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (22 bp):
TATTAAAATATATAACTAATAA
Found at i:15397770 original size:26 final size:26
Alignment explanation
Indices: 15397706--15397789 Score: 67
Period size: 24 Copynumber: 3.5 Consensus size: 26
15397696 TACAATATAG
* *
15397706 TATTAGAA-ATATACAT-AC-AATAG
1 TATTAAAATATATACATAACTAATAA
*
15397729 TA-TAAAAGATAT--ATAACTAATAA
1 TATTAAAATATATACATAACTAATAA
15397752 TATTAAAATATATACATAA-TAAT-A
1 TATTAAAATATATACATAACTAATAA
15397776 TATATATAAATATA
1 TAT-TA-AAATATA
15397790 ATATTAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 13
0.76 0.05 0.20
Matches are distributed among these distances:
21 2 0.04
22 6 0.12
23 12 0.24
24 13 0.26
25 6 0.12
26 11 0.22
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.35
Consensus pattern (26 bp):
TATTAAAATATATACATAACTAATAA
Found at i:15397777 original size:14 final size:13
Alignment explanation
Indices: 15397755--15397817 Score: 58
Period size: 13 Copynumber: 4.8 Consensus size: 13
15397745 CTAATAATAT
15397755 TAAAATATATACA
1 TAAAATATATACA
*
15397768 TAATAATATATATA
1 TAA-AATATATACA
*
15397782 T-AAATATAATA-T
1 TAAAATAT-ATACA
15397794 TAAAAATATATACA
1 T-AAAATATATACA
*
15397808 TAACATATAT
1 TAAAATATAT
15397818 GAAATATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
12 6 0.15
13 18 0.44
14 17 0.41
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (13 bp):
TAAAATATATACA
Found at i:15397815 original size:22 final size:24
Alignment explanation
Indices: 15397777--15397836 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 24
15397767 ATAATAATAT
*
15397777 ATATATAAATATAATAT-T-AAAA
1 ATATATACATATAATATATGAAAA
*
15397799 ATATATACATA-ACATATATGAAAT
1 ATATATACATATA-ATATATGAAAA
15397823 ATATATATCATATA
1 ATATATA-CATATA
15397837 GTATTAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
21 1 0.03
22 14 0.45
23 1 0.03
24 10 0.32
25 4 0.13
26 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (24 bp):
ATATATACATATAATATATGAAAA
Found at i:15397986 original size:22 final size:21
Alignment explanation
Indices: 15397961--15398026 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
15397951 TAATAATAAT
15397961 ATAAATAATGGTAAATAAAATA
1 ATAAATAATGGTAAA-AAAATA
* **
15397983 ATAAGTAATATTTAAAAAAATA
1 ATAAATAAT-GGTAAAAAAATA
15398005 A-AAA-AATGGTAAAAAAATA
1 ATAAATAATGGTAAAAAAATA
15398024 ATA
1 ATA
15398027 TAAAAACCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
19 11 0.31
20 4 0.11
21 2 0.06
22 15 0.42
23 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.26
Consensus pattern (21 bp):
ATAAATAATGGTAAAAAAATA
Found at i:15397992 original size:15 final size:16
Alignment explanation
Indices: 15397942--15397993 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
15397932 ATATTATTAT
*
15397942 TAATATTAATAATAA-
1 TAATATAAATAATAAG
*
15397957 TAATATAAATAAT-GG
1 TAATATAAATAATAAG
15397972 TAA-ATAAAATAATAAG
1 TAATAT-AAATAATAAG
15397988 TAATAT
1 TAATAT
15397994 TTAAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 2 0.07
15 22 0.73
16 4 0.13
17 2 0.07
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (16 bp):
TAATATAAATAATAAG
Found at i:15398031 original size:22 final size:21
Alignment explanation
Indices: 15397955--15398032 Score: 63
Period size: 22 Copynumber: 3.6 Consensus size: 21
15397945 TATTAATAAT
15397955 AATAATATAAATAATGGTAAATAA
1 AATAATA-AAA-AATGGTAAA-AA
* *
15397979 AATAATAAGTAATAT-TTAAAAA
1 AATAATAA--AAAATGGTAAAAA
15398001 AAT-A-AAAAAATGGTAAAAA
1 AATAATAAAAAATGGTAAAAA
15398020 AATAATATAAAAA
1 AATAATA-AAAAA
15398033 CCAAATTAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
18 4 0.09
19 9 0.20
20 3 0.07
21 2 0.05
22 10 0.23
23 5 0.11
24 9 0.20
25 2 0.05
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (21 bp):
AATAATAAAAAATGGTAAAAA
Found at i:15407690 original size:22 final size:22
Alignment explanation
Indices: 15407649--15407703 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
15407639 ACATGCAATG
* * *
15407649 AATGAATGAATGAATGAATGTCA
1 AATGAATG-TTGAATAAATGACA
*
15407672 AATGAATGTTGAATAAATGACG
1 AATGAATGTTGAATAAATGACA
15407694 AATGAATGTT
1 AATGAATGTT
15407704 AGTAATGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.29
Consensus pattern (22 bp):
AATGAATGTTGAATAAATGACA
Found at i:15417378 original size:14 final size:14
Alignment explanation
Indices: 15417361--15417388 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15417351 TTTCCTTGTT
15417361 AACTTGAAATCATA
1 AACTTGAAATCATA
15417375 AACTTGAAATCATA
1 AACTTGAAATCATA
15417389 CTTTCACCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
AACTTGAAATCATA
Found at i:15420753 original size:18 final size:18
Alignment explanation
Indices: 15420732--15420787 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
15420722 AAAAAAAATT
15420732 TAAATATTTTAAAATTTA
1 TAAATATTTTAAAATTTA
* *
15420750 TAAAAATTTCAAAATTTA
1 TAAATATTTTAAAATTTA
15420768 T--AT-TTTTATAAATTTA
1 TAAATATTTTA-AAATTTA
15420784 TAAA
1 TAAA
15420788 AAAACAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 4 0.13
16 9 0.29
18 18 0.58
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAATATTTTAAAATTTA
Found at i:15429444 original size:18 final size:18
Alignment explanation
Indices: 15429423--15429457 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15429413 ATGTTTTAGG
15429423 TTTTAGTAACTTGGTTGT
1 TTTTAGTAACTTGGTTGT
* *
15429441 TTTTATTAGCTTGGTTG
1 TTTTAGTAACTTGGTTG
15429458 CTTGGGATGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.06, G:0.23, T:0.57
Consensus pattern (18 bp):
TTTTAGTAACTTGGTTGT
Found at i:15446825 original size:31 final size:31
Alignment explanation
Indices: 15446787--15446848 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
15446777 TGGTTAATTG
15446787 AGTGTTACCTTTTGAATTTCCGGTACTATGT
1 AGTGTTACCTTTTGAATTTCCGGTACTATGT
*
15446818 AGTGTTACCTTTTGAATTTTCGGTACTATGT
1 AGTGTTACCTTTTGAATTTCCGGTACTATGT
15446849 GATGGTTATC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.19, C:0.15, G:0.19, T:0.47
Consensus pattern (31 bp):
AGTGTTACCTTTTGAATTTCCGGTACTATGT
Found at i:15457111 original size:13 final size:13
Alignment explanation
Indices: 15457093--15457117 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15457083 AAAGTATGCT
15457093 CCTTGTCTTTGCG
1 CCTTGTCTTTGCG
15457106 CCTTGTCTTTGC
1 CCTTGTCTTTGC
15457118 AAGGTGATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.32, G:0.20, T:0.48
Consensus pattern (13 bp):
CCTTGTCTTTGCG
Found at i:15467755 original size:25 final size:25
Alignment explanation
Indices: 15467725--15467843 Score: 93
Period size: 25 Copynumber: 4.8 Consensus size: 25
15467715 GCCCTTTCTA
*
15467725 GAGCCATATAACAGGAAGCTCATGT
1 GAGCCATATAACAGGAAGCTCATGC
* * * *
15467750 GAGCCATGTAACGGGAAGCTTATCC
1 GAGCCATATAACAGGAAGCTCATGC
* * **
15467775 GAGCTATATAA-TGGAAAGCTCATAA
1 GAGCCATATAACAGG-AAGCTCATGC
*
15467800 GAGCCATA-ATC-GAGAAGCTCATGC
1 GAGCCATATAACAG-GAAGCTCATGC
*
15467824 GAGCCA-ATAACAGGTAGCTC
1 GAGCCATATAACAGGAAGCTC
15467844 CGAAGAGCCA
Statistics
Matches: 72, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
23 1 0.01
24 26 0.36
25 45 0.62
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATGC
Found at i:15467948 original size:26 final size:26
Alignment explanation
Indices: 15467919--15467979 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
15467909 GGAAGTTCTG
15467919 AAGAGCCATTAATCAAGAAGCTCACA
1 AAGAGCCATTAATCAAGAAGCTCACA
* * *** *
15467945 AAGATCCTTTAATTGGGAAGCTCACG
1 AAGAGCCATTAATCAAGAAGCTCACA
15467971 AAGAGCCAT
1 AAGAGCCAT
15467980 ATATCAGGAC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (26 bp):
AAGAGCCATTAATCAAGAAGCTCACA
Found at i:15468673 original size:19 final size:19
Alignment explanation
Indices: 15468649--15468699 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
15468639 TTTTGCATCT
15468649 TTACAATTT-AGTCCCTAAA
1 TTACAATTTCA-TCCCTAAA
15468668 TTACAATTTCATCCCTAAA
1 TTACAATTTCATCCCTAAA
15468687 TTACAATTTCATC
1 TTACAATTTCATC
15468700 AAAATTCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 30 0.97
20 1 0.03
ACGTcount: A:0.35, C:0.24, G:0.02, T:0.39
Consensus pattern (19 bp):
TTACAATTTCATCCCTAAA
Found at i:15470792 original size:25 final size:24
Alignment explanation
Indices: 15470755--15470801 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
15470745 AAAAAGCTTC
15470755 TGAAAAAAACTC-AAGAGCAATTCT
1 TGAAAAAAACTCAAAGAG-AATTCT
*
15470779 TGAAGAAAATCTCAAAGAGAATT
1 TGAA-AAAAACTCAAAGAGAATT
15470802 ATTATTAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 4 0.20
25 11 0.55
26 5 0.25
ACGTcount: A:0.51, C:0.13, G:0.15, T:0.21
Consensus pattern (24 bp):
TGAAAAAAACTCAAAGAGAATTCT
Found at i:15471711 original size:5 final size:5
Alignment explanation
Indices: 15471703--15471734 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
15471693 AAATCAATGG
15471703 TAAAA TAAAA TAAAA TAAAA TAAAA GTAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA -TAAAA T
15471735 CCATATAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:15477703 original size:29 final size:30
Alignment explanation
Indices: 15477649--15477705 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
15477639 TCTTTTTTAA
15477649 GGTTTATTCTTGTAAAATTTTAAAAAATTT
1 GGTTTATTCTTGTAAAATTTTAAAAAATTT
*
15477679 GGTTTATT-TT-TATAATATTTAAAAAAT
1 GGTTTATTCTTGTAAAAT-TTTAAAAAAT
15477706 GACATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 5 0.20
29 12 0.48
30 8 0.32
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.51
Consensus pattern (30 bp):
GGTTTATTCTTGTAAAATTTTAAAAAATTT
Found at i:15478322 original size:23 final size:23
Alignment explanation
Indices: 15478288--15478331 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
15478278 CTATTTTTTT
15478288 AATATTAATTTT-TTTGTTTAAAA
1 AATATTAATTTTATTT-TTTAAAA
*
15478311 AATATTATTTTTATTTTTTAA
1 AATATTAATTTTATTTTTTAA
15478332 TATTTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
AATATTAATTTTATTTTTTAAAA
Found at i:15478609 original size:3 final size:3
Alignment explanation
Indices: 15478595--15478662 Score: 118
Period size: 3 Copynumber: 22.3 Consensus size: 3
15478585 GAGAGAAAGG
*
15478595 AGA AGG AGA AGA AGA AGGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA AGA
15478641 AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA A
15478663 AGGTAATGTA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
3 59 0.95
4 3 0.05
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:15479089 original size:217 final size:217
Alignment explanation
Indices: 15478828--15479412 Score: 838
Period size: 217 Copynumber: 2.7 Consensus size: 217
15478818 ATTTGGTTAA
* **
15478828 TAATTTATGAGATTAGGTTAC--AAATTGTTAGTGTTTAGTGGTTTAGGGTATTGCGATTTTTTA
1 TAATTTAT--GATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTA
***
15478891 GTAATGTAATTTTTTTTAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTAAGTTATA
64 GTAATGT-ATTTTTAAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTAAGTTAT-
15478956 AAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATATATTT-A
127 AAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGA-TTTTTTAGTAATATATTTAA
*
15479020 AAAAA-AA-TTATAGCTATTTTATTAG
191 AAAAATAATTTATAACTATTTTATTAG
* *
15479045 TAATTTATGATTAGGTTACATAAAGTGCTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGT
1 TAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGT
* * *
15479110 AATGTATTTTTAAAAAAAAATAAATTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTACATA
66 AATGTATTTTT-AAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTAAGTTATA-A
* *
15479175 AATTGTTACTGTTTAGTGGTTCAGTGTATTAGTGTATTGTGATTTTTTAGTAATATATTTAAAAA
129 AATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTAGTAATATATTTAAAAA
15479240 AATAATTTTATAACTATTTTATTAG
194 AATAA-TTTATAACTATTTTATTAG
*
15479265 TAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGT
1 TAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGT
*
15479330 AATGTA--TTTAAAAAAAATAATTTTTTAGTTATTTTGTGTTAGTAATTTATG----A-TTAT-A
66 AATGTATTTTTAAAAAAAATAATTTTATAGTTA-TTT-TGTTAGTAATTTATGATTAAGTTATAA
15479387 AATTGTTAGTGTTTA-TGGTTTAGTGT
129 AATTGTTAGTGTTTAGTGGTTTAGTGT
15479413 TTTGTGATTT
Statistics
Matches: 335, Mismatches: 23, Indels: 26
0.87 0.06 0.07
Matches are distributed among these distances:
211 10 0.03
212 15 0.04
214 3 0.01
215 11 0.03
216 25 0.07
217 163 0.49
218 8 0.02
219 15 0.04
220 85 0.25
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.50
Consensus pattern (217 bp):
TAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGT
AATGTATTTTTAAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTAAGTTATAAAA
TTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTAGTAATATATTTAAAAAAA
TAATTTATAACTATTTTATTAG
Found at i:15479170 original size:108 final size:107
Alignment explanation
Indices: 15478816--15479461 Score: 622
Period size: 108 Copynumber: 6.0 Consensus size: 107
15478806 TTATAGTTAT
* * *
15478816 TTATTTGGTTAATAATTTATGAGATTAGGTTAC--AAATTGTTAGTGTTTAGTGGTTTAGGGTAT
1 TTATTTTGTTAGTAATTTAT--GATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTAT
** ***
15478879 TGCGATTTTTTAGTAATGTAATTTTTTTTAAAAATAATTTTATAG
64 TATGATTTTTTAGTAATGT-ATTTTTAAAAAAAATAATTTTATAG
* * *
15478924 TTATTTTGTTAGTAATTTATGATTAAGTTATAAAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTG---TA
*
15478989 GTGTATTGTGATTTTTTTAGTAA--TATATTT--AAAAAA-AA--TTATAG
63 -T-TA---TGA-TTTTTTAGTAATGTATTTTTAAAAAAAATAATTTTATAG
* * * *
15479033 CTATTTTATTAGTAATTTATGATTAGGTTACATAAAGTGCTAGTGTTTAGTGGTTTAGTGTATTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
*
15479098 TGATTTTTTAGTAATGTATTTTTAAAAAAAAATAAATTTATAG
66 TGATTTTTTAGTAATGTATTTTT-AAAAAAAATAATTTTATAG
*
15479141 TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTACTGTTTAGTGGTTCAGTGTATTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTA---G-T--G-GT-TTA
* * *
15479206 GTGTATTGTGATTTTTTAGTAA--TATATTT-AAAAAAATAATTTTATAA
58 GTGTATTATGATTTTTTAGTAATGTATTTTTAAAAAAAATAATTTTATAG
* * *
15479253 CTATTTTATTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
*
15479318 TGATTTTTTAGTAATGTA--TTTAAAAAAAATAATTTTTTAG
66 TGATTTTTTAGTAATGTATTTTTAAAAAAAATAATTTTATAG
*
15479358 TTATTTTGTGTTAGTAATTTATG---A--TT--ATAAATTGTTAGTGTTTA-TGGTTTAGTGTTT
1 TTA-TTT-TGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTAT
* * * **
15479415 TGTGATTTTTT--TAATGTAATTTTTATATAATGTAATTTTATA-
64 TATGATTTTTTAGTAATGT-ATTTTTAAAAAAAATAATTTTATAG
15479457 TTATT
1 TTATT
15479462 ATTTATTTAT
Statistics
Matches: 461, Mismatches: 42, Indels: 80
0.79 0.07 0.14
Matches are distributed among these distances:
97 6 0.01
98 3 0.01
99 25 0.05
100 45 0.10
101 3 0.01
102 8 0.02
104 30 0.07
105 27 0.06
106 19 0.04
107 14 0.03
108 95 0.21
109 60 0.13
111 5 0.01
112 68 0.15
113 1 0.00
114 12 0.03
115 3 0.01
116 26 0.06
117 11 0.02
ACGTcount: A:0.31, C:0.01, G:0.16, T:0.51
Consensus pattern (107 bp):
TTATTTTGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
TGATTTTTTAGTAATGTATTTTTAAAAAAAATAATTTTATAG
Found at i:15479453 original size:15 final size:16
Alignment explanation
Indices: 15479426--15479457 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
15479416 GTGATTTTTT
15479426 TAATGTAATTTTTATA
1 TAATGTAATTTTTATA
15479442 TAATGTAA-TTTTATA
1 TAATGTAATTTTTATA
15479457 T
1 T
15479458 TATTATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTAATTTTTATA
Found at i:15479453 original size:100 final size:99
Alignment explanation
Indices: 15479203--15479432 Score: 274
Period size: 104 Copynumber: 2.3 Consensus size: 99
15479193 GTTCAGTGTA
* * * *
15479203 TTAGTGTATTGTGATTTTTTAGTAATATATTT-AAAAAAATAATTTTATAACTA-TTT-TATTAG
1 TTAGTGTATTATGATTTTTTAGTAATGTATTTAAAAAAAATAATTTTAT-ATTATTTTGTGTTAG
15479265 TAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTGGT
65 TAATTTATG---A---T-TATAAATTGTTAGTGTTTAGTGGT
*
15479307 TTAGTGTATTATGATTTTTTAGTAATGTATTTAAAAAAAATAATTTTTTAGTTATTTTGTGTTAG
1 TTAGTGTATTATGATTTTTTAGTAATGTATTTAAAAAAAATAATTTTATA-TTATTTTGTGTTAG
15479372 TAATTTATGATTATAAATTGTTAGTGTTTA-TGGT
65 TAATTTATGATTATAAATTGTTAGTGTTTAGTGGT
* *
15479406 TTAGTGTTTTGTGATTTTTT--TAATGTA
1 TTAGTGTATTATGATTTTTTAGTAATGTA
15479433 ATTTTTATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
97 7 0.06
99 22 0.19
100 19 0.17
101 1 0.01
104 32 0.28
105 17 0.15
106 3 0.03
107 14 0.12
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.53
Consensus pattern (99 bp):
TTAGTGTATTATGATTTTTTAGTAATGTATTTAAAAAAAATAATTTTATATTATTTTGTGTTAGT
AATTTATGATTATAAATTGTTAGTGTTTAGTGGT
Found at i:15479868 original size:22 final size:22
Alignment explanation
Indices: 15479843--15479887 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
15479833 CAACCAAATC
15479843 AATTCAACATATTT-TCAAGATA
1 AATTCAACATATTTAT-AAGATA
*
15479865 AATTCAGCATATTTATAAGATA
1 AATTCAACATATTTATAAGATA
15479887 A
1 A
15479888 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.47, C:0.11, G:0.07, T:0.36
Consensus pattern (22 bp):
AATTCAACATATTTATAAGATA
Found at i:15482572 original size:17 final size:16
Alignment explanation
Indices: 15482545--15482576 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
15482535 ATCAATATTT
15482545 TCATACAATTTTCATA
1 TCATACAATTTTCATA
15482561 TCATATCAATTTTCAT
1 TCATA-CAATTTTCAT
15482577 GCAAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TCATACAATTTTCATA
Found at i:15487766 original size:45 final size:45
Alignment explanation
Indices: 15487699--15487788 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
15487689 TCTGGGAAAA
* * * *
15487699 CCCTTTTTGGCAACTGCTAAAACGATTATTGATGTTGGCATAGGT
1 CCCTTTTTAGCAACTGCCAAAACAATTATTGATGTTGGCACAGGT
15487744 CCCTTTTTAGCAACTGCCAAAACAATTATTGATGTTGGCACAGGT
1 CCCTTTTTAGCAACTGCCAAAACAATTATTGATGTTGGCACAGGT
15487789 GAACTCAAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (45 bp):
CCCTTTTTAGCAACTGCCAAAACAATTATTGATGTTGGCACAGGT
Found at i:15500164 original size:24 final size:24
Alignment explanation
Indices: 15500137--15500188 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15500127 TTAGTAAGTC
*
15500137 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
15500161 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
15500185 AAAT
1 AAAT
15500189 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:15502134 original size:24 final size:24
Alignment explanation
Indices: 15502107--15502158 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15502097 TTAGTAAGTC
*
15502107 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
15502131 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
15502155 AAAT
1 AAAT
15502159 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:15504013 original size:11 final size:10
Alignment explanation
Indices: 15503994--15504073 Score: 88
Period size: 11 Copynumber: 7.4 Consensus size: 10
15503984 TGATGTTGTT
15503994 TTTTGTGCTG
1 TTTTGTGCTG
15504004 TTTTGTTGCTG
1 TTTTG-TGCTG
*
15504015 TTTGGTGCTG
1 TTTTGTGCTG
15504025 TTTTGGTGCTG
1 TTTT-GTGCTG
15504036 TTTTGCTGCTG
1 TTTTG-TGCTG
15504047 TTTTAGTGCTG
1 TTTT-GTGCTG
*
15504058 GTTTGTTGCTG
1 TTTTG-TGCTG
15504069 CTTTT
1 -TTTT
15504074 TGTCATGTTT
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
10 15 0.25
11 41 0.68
12 4 0.07
ACGTcount: A:0.01, C:0.11, G:0.30, T:0.57
Consensus pattern (10 bp):
TTTTGTGCTG
Found at i:15504034 original size:32 final size:33
Alignment explanation
Indices: 15503993--15504073 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 33
15503983 GTGATGTTGT
* * *
15503993 TTTTTGTGCTGTTTTGTTGCTG-TTTGGTGCTG
1 TTTTGGTGCTGTTTTGCTGCTGTTTTAGTGCTG
15504025 TTTTGGTGCTGTTTTGCTGCTGTTTTAGTGCTG
1 TTTTGGTGCTGTTTTGCTGCTGTTTTAGTGCTG
* *
15504058 GTTTGTTGCTGCTTTT
1 TTTTGGTGCTG-TTTT
15504074 TGTCATGTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
32 20 0.48
33 18 0.43
34 4 0.10
ACGTcount: A:0.01, C:0.11, G:0.30, T:0.58
Consensus pattern (33 bp):
TTTTGGTGCTGTTTTGCTGCTGTTTTAGTGCTG
Found at i:15504045 original size:22 final size:21
Alignment explanation
Indices: 15503994--15504073 Score: 97
Period size: 22 Copynumber: 3.7 Consensus size: 21
15503984 TGATGTTGTT
*
15503994 TTTTGTGCTGTTTTGTTGCTG
1 TTTTGTGCTGTTTTGGTGCTG
*
15504015 TTTGGTGCTGTTTTGGTGCTG
1 TTTTGTGCTGTTTTGGTGCTG
*
15504036 TTTTGCTGCTGTTTTAGTGCTG
1 TTTTG-TGCTGTTTTGGTGCTG
*
15504058 GTTTGTTGCTGCTTTT
1 TTTTG-TGCTG-TTTT
15504074 TGTCATGTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
21 23 0.45
22 24 0.47
23 4 0.08
ACGTcount: A:0.01, C:0.11, G:0.30, T:0.57
Consensus pattern (21 bp):
TTTTGTGCTGTTTTGGTGCTG
Found at i:15508644 original size:58 final size:58
Alignment explanation
Indices: 15508576--15508715 Score: 194
Period size: 58 Copynumber: 2.4 Consensus size: 58
15508566 TTTAATTCAT
*
15508576 ATAATAATTATATTAAGAATTTTATTAAATTATGTT-TTA-TTTTATTAAATTATATTTA
1 ATAATAATTATATTAA-AATTTAATTAAATTAT-TTATTATTTTTATTAAATTATATTTA
* * * *
15508634 ATAAAAATTATGTTAAAATATAATTAAATTATTTATTATTTTTATTAAATTATTTTTA
1 ATAATAATTATATTAAAATTTAATTAAATTATTTATTATTTTTATTAAATTATATTTA
*
15508692 ATAATAATTTTATTAAAATTTAAT
1 ATAATAATTATATTAAAATTTAAT
15508716 AACAATAACA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
56 2 0.03
57 17 0.24
58 52 0.73
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (58 bp):
ATAATAATTATATTAAAATTTAATTAAATTATTTATTATTTTTATTAAATTATATTTA
Found at i:15508687 original size:14 final size:14
Alignment explanation
Indices: 15508668--15508708 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
15508658 TAAATTATTT
15508668 ATTATTTTTATTAA
1 ATTATTTTTATTAA
*
15508682 ATTATTTTTAAT-A
1 ATTATTTTTATTAA
*
15508695 A-TAATTTTATTAA
1 ATTATTTTTATTAA
15508708 A
1 A
15508709 ATTTAATAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 8 0.35
13 4 0.17
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTATTTTTATTAA
Found at i:15508923 original size:16 final size:16
Alignment explanation
Indices: 15508878--15508915 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
15508868 TAAATTACTG
15508878 ATTACAATTCTATTTC
1 ATTACAATTCTATTTC
15508894 ATTACAATTCTATTTC
1 ATTACAATTCTATTTC
15508910 ATTACA
1 ATTACA
15508916 GTCTTATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.34, C:0.18, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTACAATTCTATTTC
Found at i:15508954 original size:20 final size:20
Alignment explanation
Indices: 15508925--15508962 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15508915 AGTCTTATTG
*
15508925 TATTATAGTGAACCAGACTC
1 TATTACAGTGAACCAGACTC
*
15508945 TATTACAGTGAACTAGAC
1 TATTACAGTGAACCAGAC
15508963 GTACCCTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (20 bp):
TATTACAGTGAACCAGACTC
Found at i:15516338 original size:12 final size:12
Alignment explanation
Indices: 15516321--15516345 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15516311 TAAATCAACC
15516321 TAGAGACATCAT
1 TAGAGACATCAT
15516333 TAGAGACATCAT
1 TAGAGACATCAT
15516345 T
1 T
15516346 TCACATGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TAGAGACATCAT
Found at i:15522571 original size:37 final size:37
Alignment explanation
Indices: 15522521--15522595 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
15522511 TTCTTCACAG
15522521 ATGACCTAATTTTGTTTTGCAAGGCAGACAGGGACCA
1 ATGACCTAATTTTGTTTTGCAAGGCAGACAGGGACCA
*
15522558 ATGACCTAATTTTGTTTTGTAAGGCAGACAGGGACCA
1 ATGACCTAATTTTGTTTTGCAAGGCAGACAGGGACCA
15522595 A
1 A
15522596 GTCATACTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (37 bp):
ATGACCTAATTTTGTTTTGCAAGGCAGACAGGGACCA
Found at i:15525121 original size:18 final size:20
Alignment explanation
Indices: 15525086--15525126 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
15525076 TATAATTTTT
*
15525086 AAAATATATATAATACATCA
1 AAAATATATATAAAACATCA
*
15525106 AAAATAT-TA-AAAACATTA
1 AAAATATATATAAAACATCA
15525124 AAA
1 AAA
15525127 TAAATATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 10 0.53
19 2 0.11
20 7 0.37
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAATATATATAAAACATCA
Found at i:15525358 original size:21 final size:22
Alignment explanation
Indices: 15525321--15525361 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
15525311 AAATAGTTAA
15525321 AAAACAATAAGAAAATAGCAAG
1 AAAACAATAAGAAAATAGCAAG
*
15525343 AAAATAATAA-AAAATAGCA
1 AAAACAATAAGAAAATAGCA
15525362 GTTTTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.71, C:0.07, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAACAATAAGAAAATAGCAAG
Found at i:15527145 original size:18 final size:19
Alignment explanation
Indices: 15527124--15527183 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 19
15527114 AATCGGTTAA
*
15527124 TCAGTAAT-ATTCATTTAT
1 TCAGTAATCAGTCATTTAT
15527142 TCAGT-ATCAGTCATTTAT
1 TCAGTAATCAGTCATTTAT
* **
15527160 TCTGTAA-CAGTCAAATAT
1 TCAGTAATCAGTCATTTAT
15527178 TCAGTA
1 TCAGTA
15527184 GCAGACAGTC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 2 0.06
18 32 0.91
19 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (19 bp):
TCAGTAATCAGTCATTTAT
Found at i:15527334 original size:12 final size:12
Alignment explanation
Indices: 15527309--15527343 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
15527299 AAAATACACC
* *
15527309 GTAACGGTAACA
1 GTAACAGTAGCA
15527321 GTAACAGTAGCA
1 GTAACAGTAGCA
15527333 GTAACAGTAGC
1 GTAACAGTAGC
15527344 GGTACACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (12 bp):
GTAACAGTAGCA
Found at i:15528449 original size:22 final size:21
Alignment explanation
Indices: 15528422--15528462 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
15528412 TCTCCTATTC
*
15528422 TTCTCTGTTTCGTTTGCTTTGT
1 TTCTCTGTTTCATTT-CTTTGT
*
15528444 TTCTCTTTTTCATTTCTTT
1 TTCTCTGTTTCATTTCTTT
15528463 TATTTCATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.02, C:0.20, G:0.10, T:0.68
Consensus pattern (21 bp):
TTCTCTGTTTCATTTCTTTGT
Found at i:15528545 original size:19 final size:19
Alignment explanation
Indices: 15528508--15528546 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
15528498 TTATAATATT
* **
15528508 TATTATTTATACATGTGTA
1 TATTATTAATACACATGTA
15528527 TATTATTAATACACATGTA
1 TATTATTAATACACATGTA
15528546 T
1 T
15528547 TCATTTATCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.49
Consensus pattern (19 bp):
TATTATTAATACACATGTA
Found at i:15558972 original size:22 final size:22
Alignment explanation
Indices: 15558944--15558995 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
15558934 TTAGATTTTT
**
15558944 TCTCAAGACAAAGGCCCTATTG
1 TCTCAAGACAAACACCCTATTG
**
15558966 TCTCAAGACCTACACCCTATTG
1 TCTCAAGACAAACACCCTATTG
15558988 TCTCAAGA
1 TCTCAAGA
15558996 TAGGGCAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.25
Consensus pattern (22 bp):
TCTCAAGACAAACACCCTATTG
Found at i:15560571 original size:32 final size:31
Alignment explanation
Indices: 15560535--15560610 Score: 82
Period size: 32 Copynumber: 2.5 Consensus size: 31
15560525 AAAGTATAAT
* *
15560535 TTTTTGGACAAGTTGATATACTAACTAGGTAC
1 TTTTTGGACAAGTTGAGATACCAACTA-GTAC
* * *
15560567 TTTTTGGATAAGTTTAGGTACCAACTAGTAC
1 TTTTTGGACAAGTTGAGATACCAACTAGTAC
*
15560598 -TTTTGGACTAGTT
1 TTTTTGGACAAGTT
15560611 CAAGGGGGAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
30 11 0.30
31 4 0.11
32 22 0.59
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.41
Consensus pattern (31 bp):
TTTTTGGACAAGTTGAGATACCAACTAGTAC
Found at i:15563919 original size:9 final size:9
Alignment explanation
Indices: 15563905--15563941 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
15563895 AAAATTTCTT
15563905 TTTTTTTTC
1 TTTTTTTTC
15563914 TTTTTTTTC
1 TTTTTTTTC
*
15563923 TTTATTTTC
1 TTTTTTTTC
15563932 TTTATTTTTC
1 TTT-TTTTTC
15563942 ATCCTTTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 20 0.80
10 5 0.20
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:15563949 original size:19 final size:18
Alignment explanation
Indices: 15563909--15563951 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
15563899 TTTCTTTTTT
* *
15563909 TTTTCTTTTTTTTCTTTA
1 TTTTCTTTTTTTTCATCA
*
15563927 TTTTCTTTATTTTTCATCC
1 TTTTCTTT-TTTTTCATCA
15563946 TTTTCT
1 TTTTCT
15563952 GCTTCTCCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTCTTTTTTTTCATCA
Found at i:15564793 original size:2 final size:2
Alignment explanation
Indices: 15564788--15564814 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15564778 CATATATATA
15564788 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
15564815 TTTCTTTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:15566682 original size:15 final size:15
Alignment explanation
Indices: 15566641--15566674 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15566631 ATAAAAGAAG
15566641 AATAATTAGAT-TAAA
1 AATAATTA-ATATAAA
15566656 AATAATTAATATAAA
1 AATAATTAATATAAA
15566671 AATA
1 AATA
15566675 TTCAATATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 2 0.11
15 16 0.89
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
AATAATTAATATAAA
Found at i:15567332 original size:33 final size:33
Alignment explanation
Indices: 15567295--15567364 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
15567285 AAATTAATTT
* * *
15567295 ATATTTTATGTATCATTATATTAAGTTATTTAA
1 ATATTTTATGTATCACTATAATAAATTATTTAA
* *
15567328 ATATTTTATTTATTACTATAATAAATTATTTAA
1 ATATTTTATGTATCACTATAATAAATTATTTAA
15567361 ATAT
1 ATAT
15567365 AATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (33 bp):
ATATTTTATGTATCACTATAATAAATTATTTAA
Found at i:15567373 original size:31 final size:32
Alignment explanation
Indices: 15567311--15567378 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
15567301 TATGTATCAT
* * *
15567311 TATATTAAGTTATTTAAATATTTTATTTATTAC
1 TATAATAAATTATTTAAATA-TTAATTTATTAC
*
15567344 TATAATAAATTATTTAAATA-TAATTTATTAT
1 TATAATAAATTATTTAAATATTAATTTATTAC
15567375 TATA
1 TATA
15567379 TTTAAGTAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 13 0.42
33 18 0.58
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (32 bp):
TATAATAAATTATTTAAATATTAATTTATTAC
Found at i:15570809 original size:55 final size:55
Alignment explanation
Indices: 15570619--15570873 Score: 273
Period size: 55 Copynumber: 4.8 Consensus size: 55
15570609 ACATGGGTAC
* * * *
15570619 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-T-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
*
15570668 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
** * * *
15570721 CGCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAGAAA
* *
15570776 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCC-T-TAGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
*
15570829 CCTTACCAATTGCCATG-CTTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTC-TTGACATGGTCTTACATGGTATCCTT
15570874 AAACCCTAAT
Statistics
Matches: 175, Mismatches: 19, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 51 0.29
54 12 0.07
55 69 0.39
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (55 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
Found at i:15570810 original size:108 final size:109
Alignment explanation
Indices: 15570664--15570866 Score: 322
Period size: 108 Copynumber: 1.9 Consensus size: 109
15570654 GTATCCTTTT
* *
15570664 GAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACGC-ACC
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAAC-CTACC
15570727 AA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
64 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
*
15570772 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACCA
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACC-TACCA
*
15570837 ATTGCCATGCTTTGGCATGGTCTTACATGG
65 ATTGCCATGCCTTGGCATGGTCTTACATGG
15570867 TATCCTTAAA
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
107 2 0.02
108 53 0.61
109 5 0.06
110 27 0.31
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (109 bp):
GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTACCAA
TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:15572574 original size:22 final size:21
Alignment explanation
Indices: 15572540--15572590 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
15572530 AAGTTTAAAT
15572540 AATTTTGAATTAT-TTATTTTAA
1 AATTTT-AATTATATT-TTTTAA
15572562 AATTTTAATTTATATTTTTTAA
1 AATTTTAA-TTATATTTTTTAA
*
15572584 ATTTTTA
1 AATTTTA
15572591 GAATCGCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 2 0.08
22 22 0.85
23 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
AATTTTAATTATATTTTTTAA
Found at i:15574329 original size:26 final size:26
Alignment explanation
Indices: 15574298--15574391 Score: 67
Period size: 26 Copynumber: 3.7 Consensus size: 26
15574288 ATAAGATTAT
15574298 TATTAAATATAATTTAACAATAAATAA
1 TATTAAATATAATTTAA-AATAAATAA
* *
15574325 T-TT-AATCATATTTTAATAT-AATAA
1 TATTAAAT-ATAATTTAAAATAAATAA
*
15574349 TGATTAAATATAAATTAATAA-AAATAA
1 T-ATTAAATATAATTTAA-AATAAATAA
*
15574376 GA-T--ATATAATTTAAAA
1 TATTAAATATAATTTAAAA
15574392 ACATTCTTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 17
0.69 0.09 0.22
Matches are distributed among these distances:
22 2 0.04
23 10 0.19
24 6 0.11
25 6 0.11
26 20 0.37
27 10 0.19
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (26 bp):
TATTAAATATAATTTAAAATAAATAA
Found at i:15577071 original size:26 final size:26
Alignment explanation
Indices: 15577042--15577146 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
15577032 TGGTACAAAT
15577042 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
15577068 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15577094 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15577120 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15577146 T
1 T
15577147 AATGGGCATT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15581611 original size:13 final size:14
Alignment explanation
Indices: 15581593--15581627 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
15581583 ATAGGGGTAG
15581593 GATTCTGTATATCT
1 GATTCTGTATATCT
*
15581607 G-TTCTGCATATCT
1 GATTCTGTATATCT
15581620 GATTCTGT
1 GATTCTGT
15581628 TCTCTGAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:15584155 original size:42 final size:42
Alignment explanation
Indices: 15584108--15584191 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
15584098 TTAGTTACCT
15584108 TACAATTGTAATGCAAGTATAACATAATCATGGTTTTACTTA
1 TACAATTGTAATGCAAGTATAACATAATCATGGTTTTACTTA
15584150 TACAATTGTAATGCAAGTATAACATAATCATGGTTTTACTTA
1 TACAATTGTAATGCAAGTATAACATAATCATGGTTTTACTTA
15584192 CTCAAAAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (42 bp):
TACAATTGTAATGCAAGTATAACATAATCATGGTTTTACTTA
Found at i:15585159 original size:22 final size:22
Alignment explanation
Indices: 15585115--15585159 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
15585105 AAAATAAATC
* * * *
15585115 AAAATTTATGAAAATTTATTAT
1 AAAATTAATCAAAATTCAATAT
15585137 AAAATTAATCAAAATTCAATAT
1 AAAATTAATCAAAATTCAATAT
15585159 A
1 A
15585160 TTAATAATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (22 bp):
AAAATTAATCAAAATTCAATAT
Found at i:15588045 original size:16 final size:15
Alignment explanation
Indices: 15588026--15588059 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
15588016 ATAATAATTC
*
15588026 AATAAATTAAAATTTA
1 AATAAA-TAAAATTGA
15588042 AATAAATAAAATTGA
1 AATAAATAAAATTGA
15588057 AAT
1 AAT
15588060 TTAGGAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
AATAAATAAAATTGA
Found at i:15598151 original size:43 final size:42
Alignment explanation
Indices: 15598084--15598194 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
15598074 AACAAGTACA
* * ** *
15598084 ATGCCGATGTCCCGGACGTGGTCTTACATGTAACTCA-ATATCG
1 ATGCCGATATCCCAGACAAGGTCTTACATG-AAATCAGATA-CG
**
15598127 ATGCCTCTATCCCAGACAAGGTCTTACATGAAATCAGATACG
1 ATGCCGATATCCCAGACAAGGTCTTACATGAAATCAGATACG
* *
15598169 ATGCCGATGTCCCAGACATGGTCTTA
1 ATGCCGATATCCCAGACAAGGTCTTA
15598195 TACGTAAATC
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 29 0.52
43 27 0.48
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (42 bp):
ATGCCGATATCCCAGACAAGGTCTTACATGAAATCAGATACG
Found at i:15598182 original size:42 final size:43
Alignment explanation
Indices: 15598084--15598240 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
15598074 AACAAGTACA
* * *
15598084 ATGCCGATGTCCCGGACGTGGTCTTACATGTAACTCAATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCAATATCG
** * *
15598127 ATGCCTCTATCCCAGACAAGGTCTTACATG-AAATCAGATA-CG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCA-ATATCG
* * *
15598169 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCA-ATCG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATC-AATATCG
* * *
15598212 AGGCCTG-TGTCCCAGACACGGCCTTACAT
1 ATGCC-GATGTCCCAGACATGGTCTTACAT
15598241 AATGTCTCAG
Statistics
Matches: 90, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
42 32 0.36
43 57 0.63
44 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCAATATCG
Found at i:15598227 original size:85 final size:85
Alignment explanation
Indices: 15598084--15598240 Score: 201
Period size: 85 Copynumber: 1.8 Consensus size: 85
15598074 AACAAGTACA
* * * * *
15598084 ATGCCGATGTCCCGGACGTGGTCTTACATGTAACTCAATATCGATGCCTCTATCCCAGACAAGGT
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAACTCAATATCGAGGCCTCTATCCCAGACAAGGC
15598149 CTTACATGAAATCAGATACG
66 CTTACATGAAATCAGATACG
* * * *
15598169 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGT-AA-CTCAATATCGAGGCCTCTATCCCAGACAAG
15598232 GCCTTACAT
64 GCCTTACAT
15598241 AATGTCTCAG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 55 0.90
86 3 0.05
87 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (85 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTAACTCAATATCGAGGCCTCTATCCCAGACAAGGC
CTTACATGAAATCAGATACG
Found at i:15605980 original size:13 final size:13
Alignment explanation
Indices: 15605962--15605991 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
15605952 AAACTAGATT
*
15605962 TTAACTAAGTAAA
1 TTAACTAAGAAAA
15605975 TTAACTAAGAAAA
1 TTAACTAAGAAAA
15605988 TTAA
1 TTAA
15605992 AAGGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (13 bp):
TTAACTAAGAAAA
Found at i:15633352 original size:32 final size:29
Alignment explanation
Indices: 15633316--15633380 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 29
15633306 TAGTAAAGTT
*
15633316 TTTTAAAAAATCAATTTTTTATATTTTTATAA
1 TTTT-AAAAAT-AATTTTTTATATATTT-TAA
*
15633348 TTTTATAAATAATTTTTTATATATTTTAA
1 TTTTAAAAATAATTTTTTATATATTTTAA
15633377 TTTT
1 TTTT
15633381 TTTAAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 7 0.23
30 15 0.48
31 5 0.16
32 4 0.13
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTTAAAAATAATTTTTTATATATTTTAA
Found at i:15633362 original size:30 final size:30
Alignment explanation
Indices: 15633323--15633380 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
15633313 GTTTTTTAAA
*
15633323 AAATCAATTTTTTATATTTTTATAATTTTAT
1 AAATCAATTTTTTATATATTT-TAATTTTAT
15633354 AAAT-AATTTTTTATATATTTTAATTTT
1 AAATCAATTTTTTATATATTTTAATTTT
15633381 TTTAAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 7 0.27
30 15 0.58
31 4 0.15
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (30 bp):
AAATCAATTTTTTATATATTTTAATTTTAT
Found at i:15633384 original size:32 final size:30
Alignment explanation
Indices: 15633322--15633388 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
15633312 AGTTTTTTAA
**
15633322 AAAATCAATTTTTTATATTTTTATAATTTT
1 AAAATCAATTTTTTATATTTTTATTTTTTT
15633352 ATAAAT-AATTTTTTATATATTTTAATTTTTTT
1 A-AAATCAATTTTTTATAT-TTTT-ATTTTTTT
15633384 AAAAT
1 AAAAT
15633389 TTTAATGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
30 13 0.41
31 12 0.38
32 7 0.22
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (30 bp):
AAAATCAATTTTTTATATTTTTATTTTTTT
Found at i:15638712 original size:6 final size:6
Alignment explanation
Indices: 15638701--15638830 Score: 70
Period size: 6 Copynumber: 20.2 Consensus size: 6
15638691 ACTTTCTCAC
15638701 TTTCTT TTTCTT TTTCTT TTTCTT TTTCATCT TTT-TAT TTTCTCGT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTC-T-T TTTCT-T TTTCT--T TTTCTT
* * * *
15638753 TTCACTT TTT-TT TGTTATT TTTC-C TCTCTT TTTCTCAT TTT-TCT TTTCTT
1 TT-TCTT TTTCTT T-TTCTT TTTCTT TTTCTT TTTCT--T TTTCT-T TTTCTT
*
15638803 TTTCATT TTCACTCT TTTCTT TTTCTT T
1 TTTC-TT TT-TCT-T TTTCTT TTTCTT T
15638831 CATTTGATCT
Statistics
Matches: 98, Mismatches: 12, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
5 6 0.06
6 55 0.56
7 19 0.19
8 18 0.18
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTCTT
Found at i:15638735 original size:20 final size:20
Alignment explanation
Indices: 15638701--15638830 Score: 78
Period size: 18 Copynumber: 6.7 Consensus size: 20
15638691 ACTTTCTCAC
15638701 TTTCTTTTTCTTTTTC-T-T
1 TTTCTTTTTCTTTTTCATCT
*
15638719 TTTCTTTTTCATCTTTTTAT-T
1 TTTCTTTTTC-T-TTTTCATCT
*
15638740 TTCTCGTTTTC-TTTTCA-CT
1 TT-TCTTTTTCTTTTTCATCT
* * *
15638759 TTTTTTTGTTATTTTTCCTCT
1 TTTCTTT-TTCTTTTTCATCT
* * *
15638780 CTT-TTTCTCATTTT--TCT
1 TTTCTTTTTCTTTTTCATCT
*
15638797 TTTCTTTTTCATTTTCACTCT
1 TTTCTTTTTCTTTTTCA-TCT
15638818 TTTCTTTTTCTTT
1 TTTCTTTTTCTTT
15638831 CATTTGATCT
Statistics
Matches: 86, Mismatches: 14, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
17 5 0.06
18 23 0.27
19 16 0.19
20 12 0.14
21 23 0.27
22 7 0.08
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTCTTTTTCTTTTTCATCT
Found at i:15638735 original size:21 final size:21
Alignment explanation
Indices: 15638709--15638830 Score: 62
Period size: 21 Copynumber: 5.8 Consensus size: 21
15638699 ACTTTCTTTT
15638709 TCTTTTTCTTTTTCTTTTTCA
1 TCTTTTTCTTTTTCTTTTTCA
* *
15638730 TCTTTTTATTTTCTCGTTTTC-
1 TCTTTTTCTTTT-TCTTTTTCA
**
15638751 T-TTTCACTTTTT-TTTGTT-A
1 TCTTTTTCTTTTTCTTT-TTCA
*
15638770 TTTTTCCTCTCTTTTTCTCATTTT--
1 TCTTT--T-TCTTTTTCT--TTTTCA
*
15638794 TC-TTTTCTTTTTCATTTTCA
1 TCTTTTTCTTTTTCTTTTTCA
15638814 -CTCTTTTCTTTTTCTTT
1 TCT-TTTTCTTTTTCTTT
15638831 CATTTGATCT
Statistics
Matches: 76, Mismatches: 11, Indels: 28
0.66 0.10 0.24
Matches are distributed among these distances:
18 6 0.08
19 5 0.07
20 18 0.24
21 26 0.34
22 7 0.09
23 8 0.11
24 2 0.03
25 2 0.03
26 2 0.03
ACGTcount: A:0.06, C:0.20, G:0.02, T:0.73
Consensus pattern (21 bp):
TCTTTTTCTTTTTCTTTTTCA
Found at i:15638764 original size:28 final size:27
Alignment explanation
Indices: 15638703--15638762 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
15638693 TTTCTCACTT
* *
15638703 TCTTTTTCTTTTTCTTTTTCTTTTTCA
1 TCTTTTTATTTTTCGTTTTCTTTTTCA
15638730 TCTTTTTATTTTCTCGTTTTC-TTTTCA
1 TCTTTTTATTTT-TCGTTTTCTTTTTCA
15638757 -CTTTTT
1 TCTTTTT
15638763 TTTGTTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 6 0.20
27 17 0.57
28 7 0.23
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (27 bp):
TCTTTTTATTTTTCGTTTTCTTTTTCA
Found at i:15642135 original size:16 final size:17
Alignment explanation
Indices: 15642113--15642160 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
15642103 ATTGAAGTCG
15642113 TCCATGCATGTACCTCA
1 TCCATGCATGTACCTCA
* *
15642130 -CCATGCATTGAAGC-CA
1 TCCATGCA-TGTACCTCA
15642146 TCCATGCATGTACCT
1 TCCATGCATGTACCT
15642161 TTGCATTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (17 bp):
TCCATGCATGTACCTCA
Found at i:15644084 original size:20 final size:21
Alignment explanation
Indices: 15644047--15644087 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
15644037 ATATTTTCAA
15644047 TAAAATATTAAGAATATTATT
1 TAAAATATTAAGAATATTATT
15644068 TAAAAT-TTAA-AATTATTATT
1 TAAAATATTAAGAA-TATTATT
15644088 AATGTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 11 0.58
21 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TAAAATATTAAGAATATTATT
Found at i:15645140 original size:34 final size:36
Alignment explanation
Indices: 15645085--15645167 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 36
15645075 ATTGTTATTT
*
15645085 TTAA-AATTTATTATTAAAATAAA-AT-TGAA-ATA
1 TTAATAATTTATTATAAAAATAAATATATGAATATA
15645117 TTAAATAATTTATTA-AAATAATAAATTATATGAATTATA
1 TT-AATAATTTATTATAAA-AATAAA-TATATGAA-TATA
15645156 TTAATAATTTAT
1 TTAATAATTTAT
15645168 CATATGACTA
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
32 2 0.05
33 4 0.10
34 15 0.36
36 2 0.05
37 4 0.10
38 10 0.24
39 5 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (36 bp):
TTAATAATTTATTATAAAAATAAATATATGAATATA
Found at i:15655739 original size:14 final size:14
Alignment explanation
Indices: 15655720--15655747 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15655710 GTGCAACATC
15655720 GGTCATTTCGATAA
1 GGTCATTTCGATAA
15655734 GGTCATTTCGATAA
1 GGTCATTTCGATAA
15655748 TGAGATTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (14 bp):
GGTCATTTCGATAA
Found at i:15658173 original size:10 final size:11
Alignment explanation
Indices: 15658119--15658174 Score: 60
Period size: 11 Copynumber: 5.1 Consensus size: 11
15658109 TAGTTTAGCA
*
15658119 TAAATATAAATA
1 TAAATAT-AATT
*
15658131 TAAATATATTT
1 TAAATATAATT
* *
15658142 TATATTTAATT
1 TAAATATAATT
15658153 TAAATATAATT
1 TAAATATAATT
15658164 TAAA-ATAATT
1 TAAATATAATT
15658174 T
1 T
15658175 TTTAGTCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
10 7 0.19
11 23 0.62
12 7 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAAATATAATT
Found at i:15663361 original size:10 final size:10
Alignment explanation
Indices: 15663346--15663370 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15663336 CATTAACCCC
15663346 AAAAAAAGAA
1 AAAAAAAGAA
15663356 AAAAAAAGAA
1 AAAAAAAGAA
15663366 AAAAA
1 AAAAA
15663371 TTAGGCCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:15663879 original size:43 final size:43
Alignment explanation
Indices: 15663779--15663881 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
15663769 AATATTTTAT
* **
15663779 AATAATATCTTATAATATCTTATTAGGAATCAAATTGTTAAGA
1 AATAATATCTTATAATATCTCATTAGGAATCAAATTACTAAGA
* *
15663822 GATAGTATCTTATAATATCTCATTAGGAATCAAATTACTAA-A
1 AATAATATCTTATAATATCTCATTAGGAATCAAATTACTAAGA
*
15663864 AATTAATATCCTATAATA
1 AA-TAATATCTTATAATA
15663882 ATATATTATC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 2 0.04
43 49 0.96
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.38
Consensus pattern (43 bp):
AATAATATCTTATAATATCTCATTAGGAATCAAATTACTAAGA
Found at i:15664407 original size:23 final size:24
Alignment explanation
Indices: 15664359--15664420 Score: 83
Period size: 23 Copynumber: 2.6 Consensus size: 24
15664349 GATAAATAAA
* *
15664359 TTATATATTTAAATTTATAATGGT
1 TTATATATTTAAATTTAAAATAGT
15664383 TT-TAT-TTTAATATTTAAAATAGT
1 TTATATATTTAA-ATTTAAAATAGT
15664406 TTATATATTTAAATT
1 TTATATATTTAAATT
15664421 GAGTTTTACA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 5 0.15
23 15 0.45
24 8 0.24
25 5 0.15
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (24 bp):
TTATATATTTAAATTTAAAATAGT
Found at i:15666744 original size:23 final size:23
Alignment explanation
Indices: 15666718--15666768 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
15666708 ATGGAATTTT
**
15666718 TTAATATTTTTAAATCAAAATAA
1 TTAATATTTAAAAATCAAAATAA
* *
15666741 TTAAAATTTAAAAATTAAAATAA
1 TTAATATTTAAAAATCAAAATAA
*
15666764 ATAAT
1 TTAAT
15666769 GTAAAAGTAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
TTAATATTTAAAAATCAAAATAA
Found at i:15670224 original size:31 final size:31
Alignment explanation
Indices: 15670163--15670224 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
15670153 AAATCAATGG
* ** *
15670163 CTTAAATGAAGACTTTTGAATAGTTCAGTGA
1 CTTAAATGAAAACTTTCAAATAATTCAGTGA
*
15670194 CTTAAATGAAAACTTTCAAATAATTTAGTGA
1 CTTAAATGAAAACTTTCAAATAATTCAGTGA
15670225 TCAAATTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (31 bp):
CTTAAATGAAAACTTTCAAATAATTCAGTGA
Found at i:15680225 original size:21 final size:23
Alignment explanation
Indices: 15680199--15680259 Score: 90
Period size: 24 Copynumber: 2.7 Consensus size: 23
15680189 TCGATCCTTT
*
15680199 TTAATTACTTTA-T-TATTAAGA
1 TTAATTATTTTAGTATATTAAGA
15680220 TTAATTATTTTAGTACTATTAAGA
1 TTAATTATTTTAGTA-TATTAAGA
15680244 TTAATTATTTTAGTAT
1 TTAATTATTTTAGTAT
15680260 GAATAGTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
21 11 0.31
22 1 0.03
23 1 0.03
24 23 0.64
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.54
Consensus pattern (23 bp):
TTAATTATTTTAGTATATTAAGA
Found at i:15680244 original size:24 final size:24
Alignment explanation
Indices: 15680212--15680258 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
15680202 ATTACTTTAT
15680212 TATTAAGATTAATTATTTTAGTAC
1 TATTAAGATTAATTATTTTAGTAC
15680236 TATTAAGATTAATTATTTTAGTA
1 TATTAAGATTAATTATTTTAGTA
15680259 TGAATAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (24 bp):
TATTAAGATTAATTATTTTAGTAC
Found at i:15680282 original size:9 final size:9
Alignment explanation
Indices: 15680270--15680338 Score: 50
Period size: 9 Copynumber: 7.2 Consensus size: 9
15680260 GAATAGTTTT
15680270 TTATATATA
1 TTATATATA
*
15680279 TTATTATCATT
1 TTA-TAT-ATA
*
15680290 TCTAAATATA
1 T-TATATATA
15680300 TGTATATAT-
1 T-TATATATA
*
15680309 TGTATATATT
1 T-TATATATA
*
15680319 TTATTTATA
1 TTATATATA
15680328 TTATATATA
1 TTATATATA
15680337 TT
1 TT
15680339 TTTAATGTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
9 28 0.58
10 13 0.27
11 5 0.10
12 2 0.04
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (9 bp):
TTATATATA
Found at i:15680319 original size:29 final size:27
Alignment explanation
Indices: 15680273--15680335 Score: 65
Period size: 29 Copynumber: 2.3 Consensus size: 27
15680263 TAGTTTTTTA
15680273 TATATATTATTATCATTTCTAAATATAT
1 TATATATTATTATCATTT-TAAATATAT
* **
15680301 GTATATATTGTATAT-ATTTTATTTATAT
1 -TATATATTAT-TATCATTTTAAATATAT
15680329 TATATAT
1 TATATAT
15680336 ATTTTTAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 7 0.23
28 7 0.23
29 13 0.43
30 3 0.10
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (27 bp):
TATATATTATTATCATTTTAAATATAT
Found at i:15680533 original size:43 final size:41
Alignment explanation
Indices: 15680486--15680585 Score: 96
Period size: 43 Copynumber: 2.3 Consensus size: 41
15680476 TTATCCCTAT
*
15680486 TATATTTATTATTAATAT-TAGTACATATATTTTATTATATGGG
1 TATATTTATTATTAATATATAGTA-ATAT-TTTTA-TATATCGG
* * *
15680529 TATATATATACTT-TTTATATATAGTATTATTTTTATATATCGT
1 TATAT-T-TA-TTATTAATATATAGTAATATTTTTATATATCGG
15680572 TATATTTATTATTA
1 TATATTTATTATTA
15680586 TACCTACTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
40 2 0.04
41 4 0.09
42 1 0.02
43 16 0.34
44 6 0.13
45 11 0.23
46 7 0.15
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (41 bp):
TATATTTATTATTAATATATAGTAATATTTTTATATATCGG
Found at i:15680577 original size:18 final size:17
Alignment explanation
Indices: 15680529--15680587 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
15680519 ATTATATGGG
15680529 TATATA-TATACTTTTTA
1 TATATAGTATA-TTTTTA
15680546 TATATAGTATTATTTTTA
1 TATATAGTA-TATTTTTA
*
15680564 TATATCGTTATATTTATTA
1 TATATAG-TATATTT-TTA
15680583 T-TATA
1 TATATA
15680588 CCTACTATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
17 6 0.17
18 22 0.61
19 8 0.22
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (17 bp):
TATATAGTATATTTTTA
Found at i:15680707 original size:3 final size:3
Alignment explanation
Indices: 15680660--15680692 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
15680650 TACATACATC
*
15680660 TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15680693 GTATATGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:15680724 original size:21 final size:21
Alignment explanation
Indices: 15680681--15680740 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 21
15680671 ATTATAATTA
*
15680681 TTATTAT-TAT-TAGTATATGT
1 TTATTATATATGTA-TATATCT
15680701 TTATTATATATGTATATATCT
1 TTATTATATATGTATATATCT
15680722 TTAATATATATATGTATAT
1 TT-AT-TATATATGTATAT
15680741 GTTTATGCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
20 7 0.20
21 11 0.31
22 4 0.11
23 13 0.37
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATTATATATGTATATATCT
Found at i:15680745 original size:21 final size:21
Alignment explanation
Indices: 15680693--15680745 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
15680683 ATTATTATTA
* *
15680693 GTATATGTTTATTATATATGT
1 GTATATGTTTAATATATATAT
* *
15680714 ATATATCTTTAATATATATAT
1 GTATATGTTTAATATATATAT
15680735 GTATATGTTTA
1 GTATATGTTTA
15680746 TGCAGTATTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (21 bp):
GTATATGTTTAATATATATAT
Found at i:15680902 original size:20 final size:22
Alignment explanation
Indices: 15680847--15680924 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 22
15680837 TAACACTCTT
15680847 TTATGTATATACTTTTAATAGTA
1 TTATGTATATA-TTTTAATAGTA
*
15680870 TTATGTATTTATTTTAATA-TA
1 TTATGTATATATTTTAATAGTA
* * *
15680891 -TATGTACATA-TTTAGTATTA
1 TTATGTATATATTTTAATAGTA
*
15680911 TTA-ATATATATTTT
1 TTATGTATATATTTT
15680925 TTATTTCTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
19 6 0.13
20 15 0.33
21 7 0.15
22 8 0.17
23 10 0.22
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (22 bp):
TTATGTATATATTTTAATAGTA
Found at i:15680986 original size:20 final size:20
Alignment explanation
Indices: 15680865--15680986 Score: 57
Period size: 20 Copynumber: 6.3 Consensus size: 20
15680855 ATACTTTTAA
*
15680865 TAGTATTATGTATTTAT-TT
1 TAGTATTATGTATATATATT
* *
15680884 TAATATATATG--TACATATT
1 TAGTAT-TATGTATATATATT
15680903 TAGTATTAT-TAATATATATT
1 TAGTATTATGT-ATATATATT
** *
15680923 TTTTATT-TCTA-ATATATAT
1 TAGTATTATGTATATATAT-T
* *
15680942 T-GTA-TATGT-TCATTTTATA
1 TAGTATTATGTAT-A-TATATT
15680961 TA-TATTATGTATATATATT
1 TAGTATTATGTATATATATT
15680980 TAGTATT
1 TAGTATT
15680987 GTTATGTATA
Statistics
Matches: 75, Mismatches: 13, Indels: 29
0.64 0.11 0.25
Matches are distributed among these distances:
17 1 0.01
18 16 0.21
19 26 0.35
20 31 0.41
21 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (20 bp):
TAGTATTATGTATATATATT
Found at i:15686991 original size:39 final size:39
Alignment explanation
Indices: 15686948--15687154 Score: 315
Period size: 39 Copynumber: 5.3 Consensus size: 39
15686938 GTGTGAGATA
* *
15686948 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
15686987 TATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* ** *
15687026 TATATCCAGGCTAAGTCTTGAAGGCATTCGTGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
15687065 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
15687104 TATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
15687143 TATATCCGGGCT
1 TATATCCGGGCT
15687155 TAAAGTCCTG
Statistics
Matches: 150, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 150 1.00
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:15696999 original size:75 final size:77
Alignment explanation
Indices: 15696920--15697107 Score: 269
Period size: 76 Copynumber: 2.5 Consensus size: 77
15696910 TTTCTGTTAC
* * *
15696920 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTAAG-ACACGTTGATGT-ATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTACACGCTGAGGTAATTTT-AATT
*
15696983 TCTG-TCTTTTAAA
65 TCTGTTC-ATTAAA
*
15696996 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGTACACGCTGAGGTAATTTTAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTACACGCTGAGGTAATTTTAATTT
15697060 CTGTTCATT-AA
66 CTGTTCATTAAA
*
15697071 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
15697108 CGGGTCATAC
Statistics
Matches: 102, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
75 40 0.39
76 55 0.54
77 7 0.07
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (77 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTACACGCTGAGGTAATTTTAATTT
CTGTTCATTAAA
Found at i:15697137 original size:76 final size:74
Alignment explanation
Indices: 15696920--15697137 Score: 246
Period size: 76 Copynumber: 2.9 Consensus size: 74
15696910 TTTCTGTTAC
* * *
15696920 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT--TAAGACACGTTGATGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGT-ACACAC--TGAGGTATTTT-AATT
*
15696983 TCTGTCTTTTAAA
62 TCTGTCTATTAAA
*
15696996 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GTACACACTGAGGT-ATTTTAATTTC
15697061 TGT-TCATT-AA
64 TGTCT-ATTAAA
* * *
15697071 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCATACACTGAGGTATTTTAGTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GT-ACACACTGAGGTATTTTAATTT
15697136 CT
63 CT
15697138 ATCAACTCAT
Statistics
Matches: 125, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
75 40 0.32
76 65 0.52
77 15 0.12
78 4 0.03
79 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGTACACACTGAGGTATTTTAATTTCTG
TCTATTAAA
Found at i:15697186 original size:63 final size:63
Alignment explanation
Indices: 15697075--15697193 Score: 166
Period size: 63 Copynumber: 1.9 Consensus size: 63
15697065 CATTAAAAAA
* * * * * *
15697075 ATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCATACACTGAGGTATTTTAGTTTCT
1 ATCAACTCATATTGCGAGAGGTGAGTTAACCCTCGGGCCACACACTGAGATATTTTAGTTTCT
**
15697138 ATCAACTCATATTGCGAGAGGTGAGTTAACCCTCGGGCCACATGCTGAGATATTTT
1 ATCAACTCATATTGCGAGAGGTGAGTTAACCCTCGGGCCACACACTGAGATATTTT
15697194 CAATTTTTGT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
63 48 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (63 bp):
ATCAACTCATATTGCGAGAGGTGAGTTAACCCTCGGGCCACACACTGAGATATTTTAGTTTCT
Found at i:15697373 original size:72 final size:73
Alignment explanation
Indices: 15697203--15697397 Score: 236
Period size: 72 Copynumber: 2.7 Consensus size: 73
15697193 TCAATTTTTG
* * *
15697203 TTTTTAATTTCTGCTTTT-CAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTC-GGTTTTGCAA-AAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGAC
15697267 TCGCTGAGGTA
64 -CGCTGAGGTA
* * * **
15697278 ATTTCAATTTTGG-TTCG-TTAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGA-CG
1 TTTTCAATTTCGGTTTTGCAAAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGACCG
15697340 CTGAGGTA
66 CTGAGGTA
* * *
15697348 TTTTCAATTTCGGTTTTGCAAAAAATTAGCTCATATTGCAAGAGGTGAGT
1 TTTTCAATTTCGGTTTTGCAAAAAATCAACTCATATTGCGAGAGGTGAGT
15697398 TGAACCTTGG
Statistics
Matches: 101, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
70 21 0.21
71 3 0.03
72 66 0.65
73 2 0.02
74 1 0.01
75 8 0.08
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (73 bp):
TTTTCAATTTCGGTTTTGCAAAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGACCG
CTGAGGTA
Found at i:15699326 original size:21 final size:22
Alignment explanation
Indices: 15699300--15699351 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 22
15699290 TCGATCCTTT
15699300 TTAATTACTTTA-TTATTAAGA
1 TTAATTACTTTATTTATTAAGA
*
15699321 TTAATTATTTTAGTTTTATTAAGA
1 TTAATTACTTTA--TTTATTAAGA
15699345 TTAATTA
1 TTAATTA
15699352 TGTAGCGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 11 0.41
24 16 0.59
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.56
Consensus pattern (22 bp):
TTAATTACTTTATTTATTAAGA
Found at i:15699421 original size:11 final size:11
Alignment explanation
Indices: 15699371--15699431 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
15699361 TGAATAGTTT
15699371 TTATATATATA
1 TTATATATATA
15699382 TTAT-TATCAT-
1 TTATATAT-ATA
*
15699392 TTCTA-A-ATA
1 TTATATATATA
*
15699401 -TATGTATATA
1 TTATATATATA
*
15699411 TTGTATATATA
1 TTATATATATA
15699422 TTATATATAT
1 TTATATATAT
15699432 TTTTAATGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
8 4 0.11
9 1 0.03
10 10 0.26
11 23 0.61
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.54
Consensus pattern (11 bp):
TTATATATATA
Found at i:15699432 original size:9 final size:10
Alignment explanation
Indices: 15699398--15699431 Score: 54
Period size: 9 Copynumber: 3.6 Consensus size: 10
15699388 TCATTTCTAA
15699398 ATATATGTAT
1 ATATATGTAT
15699408 ATAT-TGTAT
1 ATATATGTAT
15699417 ATATAT-TAT
1 ATATATGTAT
15699426 ATATAT
1 ATATAT
15699432 TTTTAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 18 0.78
10 5 0.22
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (10 bp):
ATATATGTAT
Done.