Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 56 of 333
Found at i:16341446 original size:51 final size:51
Alignment explanation
Indices: 16341388--16341493 Score: 185
Period size: 51 Copynumber: 2.1 Consensus size: 51
16341378 TCTTCCCCTT
16341388 ACTTTTCAAGTTTCAAACTTTGTATCTCACATTTATTAAAGCATGCTTCTC
1 ACTTTTCAAGTTTCAAACTTTGTATCTCACATTTATTAAAGCATGCTTCTC
* * *
16341439 ACTTTTCAAGTTTCAAACTTTGTATCTCGCCTTTATTAAAGTATGCTTCTC
1 ACTTTTCAAGTTTCAAACTTTGTATCTCACATTTATTAAAGCATGCTTCTC
16341490 ACTT
1 ACTT
16341494 ACGTGTTTAC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.25, C:0.22, G:0.08, T:0.44
Consensus pattern (51 bp):
ACTTTTCAAGTTTCAAACTTTGTATCTCACATTTATTAAAGCATGCTTCTC
Found at i:16341923 original size:19 final size:18
Alignment explanation
Indices: 16341899--16341934 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
16341889 TATTAAATTA
*
16341899 TTTAATATTAAAATTTTAT
1 TTTAATAAT-AAATTTTAT
16341918 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
16341935 ACAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:16341948 original size:15 final size:16
Alignment explanation
Indices: 16341921--16341950 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
16341911 ATTTTATTTT
16341921 AATAATAAATTTTAAC
1 AATAATAAATTTTAAC
16341937 AATAAT-AATTTTAA
1 AATAATAAATTTTAA
16341951 AGTTTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AATAATAAATTTTAAC
Found at i:16349273 original size:48 final size:47
Alignment explanation
Indices: 16349209--16349373 Score: 147
Period size: 46 Copynumber: 3.5 Consensus size: 47
16349199 ACCGATGCCG
* * *
16349209 TGTCCTAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGACGCA
1 TGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAGGCTGATGCA
* * * * * * *
16349257 TGTCCCAGACATGTCTTGCAGTAGCTCT-TATCTCAATGCCGATACA
1 TGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCTGATGCA
* * * * *
16349303 TGTCCCAGACATGTCTTACACTGGCTCTCATA-AT-GTGGTTGATGCA
1 TGTCCCAGACATGTCTTACACTAGCT-TTATATCTCGAGGCTGATGCA
*
16349349 TGTCCCAAACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
16349374 ACACTTATCA
Statistics
Matches: 91, Mismatches: 24, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
46 65 0.71
47 2 0.02
48 24 0.26
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (47 bp):
TGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCTGATGCA
Found at i:16354692 original size:24 final size:24
Alignment explanation
Indices: 16354665--16354712 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
16354655 CACCGTCATA
16354665 CGACCTTACTTCAGCTCAAGGAAT
1 CGACCTTACTTCAGCTCAAGGAAT
16354689 CGACCTTACTTCAGCTCAAGGAAT
1 CGACCTTACTTCAGCTCAAGGAAT
16354713 TCTTTCCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (24 bp):
CGACCTTACTTCAGCTCAAGGAAT
Found at i:16357117 original size:49 final size:47
Alignment explanation
Indices: 16356972--16357243 Score: 148
Period size: 46 Copynumber: 5.7 Consensus size: 47
16356962 GGGATAAAAT
* * ** * **
16356972 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATC-AAA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCT-TTATATCTCGA
* * * *
16357020 GTCGATGCCATGTCGCAGACAAGTCTTACA-TTGACTTTCATA-CATCGA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAG-CTTT-ATATC-TCGA
* *
16357068 GACCGATGCCGTGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGA
1 G-CCGATGCCATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGA
* * * * * *
16357117 GGCTGACG-CATGTCCCAGACATGTCTTGCAGTAGCTCT-TATCTCAA
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGA
* * * *
16357163 TGCCGAT-ACATGTCCCAGACATGTCTTACACTGGCTCTCATAATGT-G-
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTAGCT-TTAT-ATCTCGA
** *
16357210 GTTGATG-CATGTCCCAAACATGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGC
16357244 ACACTTATCA
Statistics
Matches: 173, Mismatches: 37, Indels: 30
0.72 0.15 0.12
Matches are distributed among these distances:
46 68 0.39
47 13 0.08
48 45 0.26
49 42 0.24
50 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGA
Found at i:16357143 original size:48 final size:47
Alignment explanation
Indices: 16357079--16357243 Score: 156
Period size: 46 Copynumber: 3.5 Consensus size: 47
16357069 ACCGATGCCG
* *
16357079 TGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGACGCA
1 TGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAGGCTGATGCA
* * * * * * *
16357127 TGTCCCAGACATGTCTTGCAGTAGCTCT-TATCTCAATGCCGATACA
1 TGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCTGATGCA
* * * * *
16357173 TGTCCCAGACATGTCTTACACTGGCTCTCATA-AT-GTGGTTGATGCA
1 TGTCCCAGACATGTCTTACACTAGCT-TTATATCTCGAGGCTGATGCA
*
16357219 TGTCCCAAACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
16357244 ACACTTATCA
Statistics
Matches: 92, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
46 65 0.71
47 2 0.02
48 25 0.27
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (47 bp):
TGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCTGATGCA
Found at i:16367396 original size:27 final size:27
Alignment explanation
Indices: 16367366--16367667 Score: 249
Period size: 27 Copynumber: 11.2 Consensus size: 27
16367356 ATAGAATTTA
*
16367366 TGGCTTAATATGAAAGAAAAGCCTTTG
1 TGGCATAATATGAAAGAAAAGCCTTTG
* * * **
16367393 TGGCGTAATAAGTAAGAAAAGAATTTG
1 TGGCATAATATGAAAGAAAAGCCTTTG
* * * *
16367420 TGGCGTAATATGAAATAATATCCTTTG
1 TGGCATAATATGAAAGAAAAGCCTTTG
***
16367447 TGATGTAATATGAAAGAAAAGCCTTTG
1 TGGCATAATATGAAAGAAAAGCCTTTG
* *
16367474 TGGCGTAATATGTATA-AAAAGCCTTTG
1 TGGCATAATATG-AAAGAAAAGCCTTTG
* * *
16367501 TGACATAATATAAAAGAATAA-CTTTTG
1 TGGCATAATATGAAAGAA-AAGCCTTTG
*
16367528 TGGCATAATATGAAAGAAAAACCTTTG
1 TGGCATAATATGAAAGAAAAGCCTTTG
*
16367555 TGGCATAATATGAAAGAATAGCCTTTG
1 TGGCATAATATGAAAGAAAAGCCTTTG
* * * *
16367582 TGGCAAAATATAAAATG-AAGGTCTTTG
1 TGGCATAATATGAAA-GAAAAGCCTTTG
* *
16367609 TGGCA-AACCATGACAAG-AAAGCATTTG
1 TGGCATAA-TATGA-AAGAAAAGCCTTTG
*
16367636 TGGCA-AATCATGAAATGGAAA-CCTTTG
1 TGGCATAAT-ATGAAA-GAAAAGCCTTTG
16367663 TGGCA
1 TGGCA
16367668 ATCTCTAAAA
Statistics
Matches: 223, Mismatches: 42, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
26 8 0.04
27 205 0.92
28 10 0.04
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (27 bp):
TGGCATAATATGAAAGAAAAGCCTTTG
Found at i:16367510 original size:81 final size:80
Alignment explanation
Indices: 16367371--16367597 Score: 276
Period size: 81 Copynumber: 2.8 Consensus size: 80
16367361 ATTTATGGCT
* ** * *
16367371 TAATATGAAAGAAAAGCCTTTGTGGCGTAATAAGTAAGAAAAGAATTTGTGGCGTAATATGAAAT
1 TAATATGAAAGAAAAGCCTTTGTGGCGTAATATGTAA-AAAAGCCTTTGTGGCATAATATAAAAT
* **
16367436 AATATCCTTTGTGATG
65 AATAACCTTTGTGACA
* *
16367452 TAATATGAAAGAAAAGCCTTTGTGGCGTAATATGTATAAAAAGCCTTTGTGACATAATATAAAAG
1 TAATATGAAAGAAAAGCCTTTGTGGCGTAATATGTA-AAAAAGCCTTTGTGGCATAATATAAAAT
* *
16367517 AATAACTTTTGTGGCA
65 AATAACCTTTGTGACA
* * *
16367533 TAATATGAAAGAAAAACCTTTGTGGCATAATATG-AAAGAATAGCCTTTGTGGCAAAATATAAAA
1 TAATATGAAAGAAAAGCCTTTGTGGCGTAATATGTAAA-AA-AGCCTTTGTGGCATAATATAAAA
16367597 T
64 T
16367598 GAAGGTCTTT
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
79 2 0.02
80 3 0.02
81 120 0.95
82 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (80 bp):
TAATATGAAAGAAAAGCCTTTGTGGCGTAATATGTAAAAAAGCCTTTGTGGCATAATATAAAATA
ATAACCTTTGTGACA
Found at i:16368540 original size:45 final size:45
Alignment explanation
Indices: 16368489--16368579 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
16368479 ATTTCACACA
16368489 TTACTTGGATACCAAGCCAAGCCTAAAACCAACCCTTATGTACTG
1 TTACTTGGATACCAAGCCAAGCCTAAAACCAACCCTTATGTACTG
16368534 TTACTTGGATACCAAGCCAAGCCTAAAACCAACCCTTATGTACTG
1 TTACTTGGATACCAAGCCAAGCCTAAAACCAACCCTTATGTACTG
16368579 T
1 T
16368580 AACAGCCAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (45 bp):
TTACTTGGATACCAAGCCAAGCCTAAAACCAACCCTTATGTACTG
Found at i:16369731 original size:41 final size:40
Alignment explanation
Indices: 16369674--16369897 Score: 205
Period size: 41 Copynumber: 5.5 Consensus size: 40
16369664 CTTTAATTAT
** * *
16369674 TTTGTACTTCGGTACCCCTTAAATGCACATACGTGCTCCTG
1 TTTGTACTTCAATACCCCTGAATTGCACATACGTGC-CCTG
* * *
16369715 TTTGTACTTTAATACCCTTGAATTGCACATACATGACCCTG
1 TTTGTACTTCAATACCCCTGAATTGCACATACGTG-CCCTG
* *
16369756 TTTGTACTTCAATACCTCTGAATTGCATATACGTGCCCGTG
1 TTTGTACTTCAATACCCCTGAATTGCACATACGTGCCC-TG
** * *
16369797 TTTGTACTTCGGTACACCTGAATTGCACATACGTACCCCTG
1 TTTGTACTTCAATACCCCTGAATTGCACATACGT-GCCCTG
* ** * * *
16369838 TTCGTACTTCGGTACCTCTGAATTACACATACGTACCCCTG
1 TTTGTACTTCAATACCCCTGAATTGCACATACGT-GCCCTG
* **
16369879 TTTATACTTCGGTACCCCT
1 TTTGTACTTCAATACCCCT
16369898 AGATGTACTT
Statistics
Matches: 155, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
40 3 0.02
41 148 0.95
42 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (40 bp):
TTTGTACTTCAATACCCCTGAATTGCACATACGTGCCCTG
Found at i:16369819 original size:82 final size:81
Alignment explanation
Indices: 16369674--16369895 Score: 259
Period size: 82 Copynumber: 2.7 Consensus size: 81
16369664 CTTTAATTAT
* * * ***
16369674 TTTGTACTTCGGTACCCCTTAAATGCACATACGTGCTCCTGTTTGTACTTTAATACCCTTGAATT
1 TTTGTACTTCGGTACCTCTGAATTGCACATACGTGC-CCTGTTTGTACTTCGGTACCCTTGAATT
16369739 GCACATACATGA-CCCTG
65 GCACATACAT-ACCCCTG
** *
16369756 TTTGTACTTCAATACCTCTGAATTGCATATACGTGCCCGTGTTTGTACTTCGGTACACC-TGAAT
1 TTTGTACTTCGGTACCTCTGAATTGCACATACGTGCCC-TGTTTGTACTTCGGTAC-CCTTGAAT
*
16369820 TGCACATACGTACCCCTG
64 TGCACATACATACCCCTG
* * * *
16369838 TTCGTACTTCGGTACCTCTGAATTACACATACGTACCCCTGTTTATACTTCGGTACCC
1 TTTGTACTTCGGTACCTCTGAATTGCACATACGT-GCCCTGTTTGTACTTCGGTACCC
16369896 CTAGATGTAC
Statistics
Matches: 119, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
81 5 0.04
82 109 0.92
83 5 0.04
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (81 bp):
TTTGTACTTCGGTACCTCTGAATTGCACATACGTGCCCTGTTTGTACTTCGGTACCCTTGAATTG
CACATACATACCCCTG
Found at i:16369837 original size:21 final size:21
Alignment explanation
Indices: 16369808--16369878 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 21
16369798 TTGTACTTCG
*
16369808 GTACACCTGAATTGCACATAC
1 GTACCCCTGAATTGCACATAC
* *
16369829 GTACCCCTG--TTCGTAC-TTC
1 GTACCCCTGAATT-GCACATAC
* *
16369848 GGTACCTCTGAATTACACATAC
1 -GTACCCCTGAATTGCACATAC
16369870 GTACCCCTG
1 GTACCCCTG
16369879 TTTATACTTC
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
19 4 0.11
20 11 0.30
21 18 0.49
22 4 0.11
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.28
Consensus pattern (21 bp):
GTACCCCTGAATTGCACATAC
Found at i:16369895 original size:20 final size:20
Alignment explanation
Indices: 16369829--16369897 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
16369819 TTGCACATAC
**
16369829 GTACCCCTGTTCGTACTTCG
1 GTACCCCTGTTTATACTTCG
* * * *
16369849 GTACCTCTGAATTACACATAC-
1 GTACCCCTG-TTTATAC-TTCG
16369870 GTACCCCTGTTTATACTTCG
1 GTACCCCTGTTTATACTTCG
16369890 GTACCCCT
1 GTACCCCT
16369898 AGATGTACTT
Statistics
Matches: 36, Mismatches: 10, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
19 2 0.06
20 21 0.58
21 11 0.31
22 2 0.06
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.33
Consensus pattern (20 bp):
GTACCCCTGTTTATACTTCG
Found at i:16377734 original size:18 final size:17
Alignment explanation
Indices: 16377686--16377736 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 17
16377676 TGTTAATTTC
16377686 ACATTTAAAAATAATTAT
1 ACATTT-AAAATAATTAT
16377704 A-ATTTAATTAATAATTAT
1 ACATTTAA--AATAATTAT
16377722 ACATTTACAAATAAT
1 ACATTTA-AAATAAT
16377737 CAAAATTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
16 2 0.07
17 4 0.14
18 17 0.59
19 5 0.17
20 1 0.03
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (17 bp):
ACATTTAAAATAATTAT
Found at i:16377756 original size:36 final size:36
Alignment explanation
Indices: 16377686--16377757 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
16377676 TGTTAATTTC
* * *
16377686 ACATTTAAAAATAATTATAATTTAATTAATAATTAT
1 ACATTTAAAAATAATCAAAATTTAATTAACAATTAT
*
16377722 ACATTTACAAATAATCAAAATTTAAATT-ACAATTAT
1 ACATTTAAAAATAATCAAAATTT-AATTAACAATTAT
16377758 TCCTTAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 27 0.87
37 4 0.13
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (36 bp):
ACATTTAAAAATAATCAAAATTTAATTAACAATTAT
Found at i:16378494 original size:3 final size:3
Alignment explanation
Indices: 16378486--16378520 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
16378476 AGAAAATCCT
16378486 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
16378521 TTTGCATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:16392115 original size:27 final size:29
Alignment explanation
Indices: 16392072--16392148 Score: 72
Period size: 29 Copynumber: 2.7 Consensus size: 29
16392062 AAGTTACACC
*
16392072 TATTTTATTA-TTA-TTTAA-G-TATAAA
1 TATTTTTTTATTTATTTTAATGTTATAAA
* *
16392097 TATTTTTTTATTTATTTTAATGTTTTACA
1 TATTTTTTTATTTATTTTAATGTTATAAA
16392126 TATTTTTATGTATTATATTTTAA
1 TATTTTT-T-TATT-TATTTTAA
16392149 ATTTATTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
25 9 0.21
26 3 0.07
27 5 0.12
28 1 0.02
29 11 0.26
30 1 0.02
31 4 0.10
32 8 0.19
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (29 bp):
TATTTTTTTATTTATTTTAATGTTATAAA
Found at i:16398403 original size:29 final size:29
Alignment explanation
Indices: 16398371--16398429 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 29
16398361 CTAATACTAT
16398371 TATTTAT-CTAATATT-TATTTGTCTATTTA
1 TATTTATACTAATATTATA-TT-TCTATTTA
* *
16398400 TATTTCTACTATTATTATATTTCTATTTA
1 TATTTATACTAATATTATATTTCTATTTA
16398429 T
1 T
16398430 TATATTTCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 15 0.58
30 9 0.35
31 2 0.08
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (29 bp):
TATTTATACTAATATTATATTTCTATTTA
Found at i:16398419 original size:17 final size:15
Alignment explanation
Indices: 16398397--16398441 Score: 72
Period size: 15 Copynumber: 2.9 Consensus size: 15
16398387 ATTTGTCTAT
16398397 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
16398414 TTATATTTCTATTTA
1 TTATATTTCTATTTA
16398429 TTATATTTCTATT
1 TTATATTTCTATT
16398442 ACTATTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:16398446 original size:21 final size:20
Alignment explanation
Indices: 16398417--16398455 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
16398407 ACTATTATTA
*
16398417 TATTTCTATTTATTATATTTC
1 TATTACTATTTA-TATATTTC
16398438 TATTACTATTTATATATT
1 TATTACTATTTATATATT
16398456 AATATTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTACTATTTATATATTTC
Found at i:16398461 original size:20 final size:20
Alignment explanation
Indices: 16398412--16398462 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
16398402 TTTCTACTAT
*
16398412 TATTATATTTCTATTTATTA
1 TATTATATTACTATTTATTA
*
16398432 TATTTCTATTACTATTTA-TA
1 TA-TTATATTACTATTTATTA
16398452 TATTAATATTA
1 TATT-ATATTA
16398463 TGTTCATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 2 0.08
20 11 0.42
21 13 0.50
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTATATTACTATTTATTA
Found at i:16398817 original size:3 final size:3
Alignment explanation
Indices: 16398803--16398848 Score: 56
Period size: 3 Copynumber: 15.0 Consensus size: 3
16398793 GAAAATTTTA
* **
16398803 TAT TAT TCAT TAT TAT TAT TGT TAT TAT TAT TAT TGC TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
16398849 CCTTTTTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:16398829 original size:15 final size:15
Alignment explanation
Indices: 16398803--16398848 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
16398793 GAAAATTTTA
16398803 TATTATT-C-ATTAT
1 TATTATTGCTATTAT
*
16398816 TATTATTGTTATTAT
1 TATTATTGCTATTAT
16398831 TATTATTGCTATTAT
1 TATTATTGCTATTAT
16398846 TAT
1 TAT
16398849 CCTTTTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 7 0.24
15 22 0.76
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (15 bp):
TATTATTGCTATTAT
Found at i:16404668 original size:53 final size:53
Alignment explanation
Indices: 16404588--16404734 Score: 231
Period size: 53 Copynumber: 2.8 Consensus size: 53
16404578 CATCTTACCT
*
16404588 TTATTACATTTGCTATCTTTGATTAACTTACTCATTTCGAGTTAATTCCCTTC
1 TTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAGTTAATTCCCTTC
* * *
16404641 TTATTACATTTGCTACCTTTGATTAACTTATTCATTTCAAGTTAATTTCCTTC
1 TTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAGTTAATTCCCTTC
* * *
16404694 TTATTGCATTTGTTATCTTTGATTAATTTATTCATTTCGAG
1 TTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAG
16404735 CTATGCTCCC
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 85 1.00
ACGTcount: A:0.23, C:0.17, G:0.08, T:0.52
Consensus pattern (53 bp):
TTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAGTTAATTCCCTTC
Found at i:16406280 original size:31 final size:32
Alignment explanation
Indices: 16406227--16406298 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
16406217 TTCTTTTGTA
* *
16406227 TATTTTTAAATTATTTTATTATGTA-ATTTATT
1 TATTTTAAAATTATCTTATTATGTATATTT-TT
*
16406259 TATTTTAAAATTCTCTT-TTATGTATATTTTT
1 TATTTTAAAATTATCTTATTATGTATATTTTT
*
16406290 TGTTTTAAA
1 TATTTTAAA
16406299 GATTTATATG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 17 0.49
32 18 0.51
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (32 bp):
TATTTTAAAATTATCTTATTATGTATATTTTT
Found at i:16406407 original size:25 final size:26
Alignment explanation
Indices: 16406374--16406423 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
16406364 TTAATTTATA
16406374 TATTATTATTTTTCAT-ATTTATTTT
1 TATTATTATTTTTCATGATTTATTTT
* *
16406399 TATTCTTATTTTTTATGATTTATTT
1 TATTATTATTTTTCATGATTTATTT
16406424 CAAACTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (26 bp):
TATTATTATTTTTCATGATTTATTTT
Found at i:16410281 original size:19 final size:19
Alignment explanation
Indices: 16410257--16410301 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
16410247 CGACACCTTT
* *
16410257 TGCATT-CATTTCATGCATC
1 TGCATTACATTACAT-CATA
16410276 TGCATTACATTACATCATA
1 TGCATTACATTACATCATA
16410295 TGCATTA
1 TGCATTA
16410302 AAGTCTACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (19 bp):
TGCATTACATTACATCATA
Found at i:16419165 original size:177 final size:174
Alignment explanation
Indices: 16418869--16419397 Score: 659
Period size: 177 Copynumber: 3.0 Consensus size: 174
16418859 ATTACAGATC
* *
16418869 TTATCTTCCTGAGGTAGCAAGGGAGTAGACTAATGATATAGATCTTGTCTCCTCGAGATAACAGT
1 TTATCTTCCTGAGGTAGCAAGGGAGTAGACTAATGAT-TAGATCTTGTCTCCTCAAGATAGCAGT
* * * * *
16418934 GGGGCAGATTGAAAATGGCAAACCATATCTTCCCGAGGTAGCAGAGAAGTAGATTTTAGCCACTA
65 -GGGCAGATTGAAAATGGCGAATCTTATCTTCCCGAGGTAGTAGAGGAGTAGATTTTAGCCACTA
* * *
16418999 GCCTGATCTCCCTGAGGTAGTAATGGAGTAGGCTAGAGATTGTAGTA
129 GCCTTATCTCCCTGAGGTAGCAAGGGAGTAGGCT-GAGATTGTAGTA
* * *
16419046 TTATCTTCCTTAGGTAGCAAGGGAGCAGACTGATGATGTAGATCTTGTCTCCTCAAGATAGCAGT
1 TTATCTTCCTGAGGTAGCAAGGGAGTAGACTAATGAT-TAGATCTTGTCTCCTCAAGATAGCAGT
** *
16419111 GGGACAGATCAAAAATTGCGAATCTTATCTTCCCGAGGTAGTAGAGGAGTAGATTTTAGCCACTA
65 GGG-CAGATTGAAAATGGCGAATCTTATCTTCCCGAGGTAGTAGAGGAGTAGATTTTAGCCACTA
* *
16419176 GCCTTATCTCCCTGAGGTAGCAAGGGAGTAGGCTGGATATTGTAGTC
129 GCCTTATCTCCCTGAGGTAGCAAGGGAGTAGGCT-GAGATTGTAGTA
* * * *
16419223 TTATCTTCCTGAGTTAGCAAGGGAGTATACTAATGATTCAGATTTTGTCTCCT-AGAGATAGTAG
1 TTATCTTCCTGAGGTAGCAAGGGAGTAGACTAATGATT-AGATCTTGTCTCCTCA-AGATAGCAG
* ** * *
16419287 TAGGGTAGATTGAAAGCGGTGAATCTTATCTTCCCGAGGTAGTAG-GAGAGCAGATTTTAGCCAC
64 T-GGGCAGATTGAAAATGGCGAATCTTATCTTCCCGAGGTAGTAGAG-GAGTAGATTTTAGCCAC
* * * *
16419351 CAGCCTTATCTCTCT-AGGTAGCAAGGGAGCAAGCTGAAGATTGTAGT
127 TAGCCTTATCTCCCTGAGGTAGCAAGGGAGTAGGCTG-AGATTGTAGT
16419398 CTCATTTTCC
Statistics
Matches: 306, Mismatches: 40, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
175 1 0.00
176 33 0.11
177 269 0.88
178 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (174 bp):
TTATCTTCCTGAGGTAGCAAGGGAGTAGACTAATGATTAGATCTTGTCTCCTCAAGATAGCAGTG
GGCAGATTGAAAATGGCGAATCTTATCTTCCCGAGGTAGTAGAGGAGTAGATTTTAGCCACTAGC
CTTATCTCCCTGAGGTAGCAAGGGAGTAGGCTGAGATTGTAGTA
Found at i:16421535 original size:15 final size:15
Alignment explanation
Indices: 16421512--16421550 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
16421502 TTATCTTAAA
* *
16421512 ATTAATTTATATATT
1 ATTATTTTACATATT
16421527 ATTATTTTACATATT
1 ATTATTTTACATATT
16421542 ATTTATTTT
1 A-TTATTTT
16421551 TATTCTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTATTTTACATATT
Found at i:16422755 original size:46 final size:46
Alignment explanation
Indices: 16422702--16422849 Score: 206
Period size: 46 Copynumber: 3.2 Consensus size: 46
16422692 AGAGCAAATT
* *
16422702 GATTGAAGAAGATACAAATCCTATACCCCTGAATTGTAGTGGGATG
1 GATTGAAGAAGATACAAATCCTATACCCCTGAGTTGCAGTGGGATG
* *
16422748 GATTGAAGAAGATACAAATCCTATACCCCTGAGCTGCAATGGGATG
1 GATTGAAGAAGATACAAATCCTATACCCCTGAGTTGCAGTGGGATG
* * * * *
16422794 GATTGAAGATGGTACAAATTCTATACCCTTGAGTTGCAGTGAGATG
1 GATTGAAGAAGATACAAATCCTATACCCCTGAGTTGCAGTGGGATG
*
16422840 GATGGAAGAA
1 GATTGAAGAA
16422850 ACCACAAATT
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 89 1.00
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (46 bp):
GATTGAAGAAGATACAAATCCTATACCCCTGAGTTGCAGTGGGATG
Found at i:16423574 original size:143 final size:143
Alignment explanation
Indices: 16423280--16423646 Score: 488
Period size: 143 Copynumber: 2.6 Consensus size: 143
16423270 TAGATTGAAG
* * * * *
16423280 ATGGTGGATCTTATCTTCCTGAAGTTAC-GTGAAGTAGATTGAAGCCACCGGCCTTATCTCCTTG
1 ATGGTGGATCTTATCTTTCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTG
* * * * * *
16423344 AAGTTTCAACCGAACAAACTGAAGAAAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATT
66 AAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATT
16423409 AAAGCTACAAATA
131 AAAGCTACAAATA
* *
16423422 ATGGCGGATCTTATCTTTCTGAAGTTGCAGTGGAGTAGATTAAAGCCACCAGCCTTATCTCCCTG
1 ATGGTGGATCTTATCTTTCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTG
*
16423487 AAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATTTCTCT-AGAGTTGCAGTGGAACAGAT
66 AAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATTTCCCTGA-AGTTGCAGTGGAACAGAT
* *
16423551 TGAAGCTACAAATT
130 TAAAGCTACAAATA
* * * **
16423565 ATGGTGGATCTTATC-TTCTTAAAGTTGCAATGGAGGAGATTGAAGCTGCCAGCCTTATCTCCCT
1 ATGGTGGATCTTATCTTTC-TGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCT
* *
16423629 GAAGTTGTAGTGGAGCAG
65 GAAGTTGCAGCGGAGCAG
16423647 GTTGAAATTA
Statistics
Matches: 197, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
142 29 0.15
143 168 0.85
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (143 bp):
ATGGTGGATCTTATCTTTCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTG
AAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATT
AAAGCTACAAATA
Found at i:16423685 original size:143 final size:143
Alignment explanation
Indices: 16423280--16423706 Score: 391
Period size: 143 Copynumber: 3.0 Consensus size: 143
16423270 TAGATTGAAG
* * * * * * * * * *
16423280 ATGGTGGATCTTATCTTCCTGAAGTTAC-GTGAAGTAGATTGAAGCCACCGGCCTTATCTCCTTG
1 ATGGCGGATCTTATCTTTCTAAAGTTGCAATGGAGGAGATTAAAGCCACCAGCCTTATCTCCCTG
* * * * * * * * **
16423344 AAGTTTCAACCGAACAAACTGAAGAAAGCGAATCTTATTTCCCT-GAAGTTGTAGTGGAACAGAT
66 AAGTTGCAGCGGAGCAGACTGAAGAAAGCCAATCTTATTACTCTAG-AGTTCCAGTGGAACAGAT
*
16423408 TAAAGCTACAAATA
130 TGAAGCTACAAATA
* * *
16423422 ATGGCGGATCTTATCTTTCTGAAGTTGCAGTGGAGTAGATTAAAGCCACCAGCCTTATCTCCCTG
1 ATGGCGGATCTTATCTTTCTAAAGTTGCAATGGAGGAGATTAAAGCCACCAGCCTTATCTCCCTG
* * *
16423487 AAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATTTCTCTAGAGTTGCAGTGGAACAGATT
66 AAGTTGCAGCGGAGCAGACTGAAGAAAGCCAATCTTATTACTCTAGAGTTCCAGTGGAACAGATT
*
16423552 GAAGCTACAAATT
131 GAAGCTACAAATA
* * **
16423565 ATGGTGGATCTTATC-TTCTTAAAGTTGCAATGGAGGAGATTGAAGCTGCCAGCCTTATCTCCCT
1 ATGGCGGATCTTATCTTTC-TAAAGTTGCAATGGAGGAGATTAAAGCCACCAGCCTTATCTCCCT
* * ** * * *
16423629 GAAGTTGTAGTGGAGCAGGTTGAA-ATTA-CCAATTCTTATCTACTTTAG-GTTCCAGT-GAAGT
65 GAAGTTGCAGCGGAGCAGACTGAAGA-AAGCCAA-TCTTAT-TACTCTAGAGTTCCAGTGGAA-C
*
16423690 AGATCGAAGCTACAAAT
126 AGATTGAAGCTACAAAT
16423707 CTCTTGTAAG
Statistics
Matches: 244, Mismatches: 34, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
142 35 0.14
143 202 0.83
144 7 0.03
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (143 bp):
ATGGCGGATCTTATCTTTCTAAAGTTGCAATGGAGGAGATTAAAGCCACCAGCCTTATCTCCCTG
AAGTTGCAGCGGAGCAGACTGAAGAAAGCCAATCTTATTACTCTAGAGTTCCAGTGGAACAGATT
GAAGCTACAAATA
Found at i:16423903 original size:16 final size:16
Alignment explanation
Indices: 16423882--16423912 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
16423872 ACACGACCGT
16423882 GTGTCTCAACCGTGTC
1 GTGTCTCAACCGTGTC
16423898 GTGTCTCAACCGTGT
1 GTGTCTCAACCGTGT
16423913 GAGGGACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.29, G:0.26, T:0.32
Consensus pattern (16 bp):
GTGTCTCAACCGTGTC
Found at i:16426668 original size:37 final size:37
Alignment explanation
Indices: 16426627--16426698 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
16426617 TAAAAAAATA
* *
16426627 ATTTTTAT-ATTTTTTATTAATTTTTAAATTTTAAACT
1 ATTTTTATAAATTTTT-TGAATTTTTAAATTTTAAACT
16426664 ATTTTTATAAATTTTTTGAATTTTTAAATTTTAAA
1 ATTTTTATAAATTTTTTGAATTTTTAAATTTTAAA
16426699 AAATTAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 26 0.81
38 6 0.19
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (37 bp):
ATTTTTATAAATTTTTTGAATTTTTAAATTTTAAACT
Found at i:16430994 original size:28 final size:29
Alignment explanation
Indices: 16430936--16430992 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
16430926 TTTATTAATG
* *
16430936 TTAATTTTAAAAAAAATGCTTGAATGAAA
1 TTAATTTAAAAAAAAACGCTTGAATGAAA
16430965 TTAATTTAAAAAAAAACGCTTGAATGAA
1 TTAATTTAAAAAAAAACGCTTGAATGAA
16430993 TTGAAAGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (29 bp):
TTAATTTAAAAAAAAACGCTTGAATGAAA
Found at i:16431632 original size:3 final size:3
Alignment explanation
Indices: 16431619--16431666 Score: 87
Period size: 3 Copynumber: 15.7 Consensus size: 3
16431609 ATAAATACAC
16431619 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
16431665 AA
1 AA
16431667 CGGAATAGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:16433708 original size:44 final size:44
Alignment explanation
Indices: 16433599--16433778 Score: 200
Period size: 44 Copynumber: 4.1 Consensus size: 44
16433589 GATTTATGAC
* * * * *
16433599 TTGTAGCTTTAATCTGTTCTACTGCAAGTTCAGGGA-AGTGAGAT
1 TTGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGA-TGAGAT
* * *
16433643 TCGCTATCTTCAATCTGCTCCACTGCAATTTCAAGGAGATGAGAT
1 TTG-TAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATGAGAT
* * * *
16433688 TTGTAACTTCAACCTGCTCCACTGTAATTTCAGGGAGATAAGGT
1 TTGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATGAGAT
** *
16433732 TTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATGAGAT
1 TTGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATGAGAT
16433776 TTG
1 TTG
16433779 CCACGATGAC
Statistics
Matches: 113, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
44 77 0.68
45 35 0.31
46 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (44 bp):
TTGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATGAGAT
Found at i:16449391 original size:19 final size:20
Alignment explanation
Indices: 16449369--16449407 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
16449359 TTATGAAACT
*
16449369 TAATACATATG-ATGAAATG
1 TAATACAGATGAATGAAATG
*
16449388 TAATGCAGATGAATGAAATG
1 TAATACAGATGAATGAAATG
16449408 AATGCAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.46, C:0.05, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATACAGATGAATGAAATG
Found at i:16453146 original size:3 final size:3
Alignment explanation
Indices: 16453133--16453168 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
16453123 ATAAATACAC
*
16453133 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
16453169 CGGAATAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:16453260 original size:22 final size:23
Alignment explanation
Indices: 16453213--16453260 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
16453203 AATAAAACCA
*
16453213 AAATAAAGAACAAATAAAAAGGT
1 AAATAAAGAACAAATAAAAAGAT
*
16453236 AAATAAAGTA-AAATAAATAA-AT
1 AAATAAAGAACAAATAAA-AAGAT
16453258 AAA
1 AAA
16453261 CAATAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.17
Consensus pattern (23 bp):
AAATAAAGAACAAATAAAAAGAT
Found at i:16455658 original size:40 final size:40
Alignment explanation
Indices: 16455614--16455703 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 40
16455604 ATCAAAATGG
* * * *
16455614 ATAGGATTTGTTATTGATTCACTATGGTAATTTAAAGTGA
1 ATAGGATTTGTTACTGATTCACTACGGTAACTTAAAGCGA
* * *
16455654 ATAGGATTTATTCCTGATTCACTACGGTAACTTAAGGCGA
1 ATAGGATTTGTTACTGATTCACTACGGTAACTTAAAGCGA
16455694 ATAGGATTTG
1 ATAGGATTTG
16455704 ACCTAAAAAG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (40 bp):
ATAGGATTTGTTACTGATTCACTACGGTAACTTAAAGCGA
Found at i:16458833 original size:34 final size:35
Alignment explanation
Indices: 16458788--16458874 Score: 97
Period size: 38 Copynumber: 2.4 Consensus size: 35
16458778 AAATTAACTA
* *
16458788 TTAATTTATTAAATT-A-AAGTTTAGGGTATTAGGG
1 TTAATTAATTAAATTGATAAATTTAGGGT-TTAGGG
16458822 TTAATTAATTAAATTAGGGATAAATTTAGGGTTTAGGG
1 TTAATTAATTAAATT---GATAAATTTAGGGTTTAGGG
*
16458860 TTAATTGATTAAATT
1 TTAATTAATTAAATT
16458875 TAGGGTTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
34 14 0.31
38 21 0.47
39 10 0.22
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.44
Consensus pattern (35 bp):
TTAATTAATTAAATTGATAAATTTAGGGTTTAGGG
Found at i:16458839 original size:19 final size:19
Alignment explanation
Indices: 16458815--16458885 Score: 56
Period size: 19 Copynumber: 3.7 Consensus size: 19
16458805 AGTTTAGGGT
16458815 ATTAGGGTTAATTAATTAA
1 ATTAGGGTTAATTAATTAA
* * *
16458834 ATTAGGGATAA--ATTTAGGG
1 ATTAGGGTTAATTAATTA--A
* *
16458853 TTTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTAATTAA
16458872 ATTTAGGGTTAATT
1 A-TTAGGGTTAATT
16458886 GATACATAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
17 4 0.11
19 19 0.50
20 12 0.32
21 3 0.08
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (19 bp):
ATTAGGGTTAATTAATTAA
Found at i:16458850 original size:39 final size:40
Alignment explanation
Indices: 16458802--16458879 Score: 124
Period size: 38 Copynumber: 2.0 Consensus size: 40
16458792 TTTATTAAAT
16458802 TAAAGTTTAGGGTATTAGGGTTAATTAATTAAA-TTAGGGA
1 TAAAGTTTAGGGT-TTAGGGTTAATTAATTAAATTTAGGGA
*
16458842 TAAA-TTTAGGGTTTAGGGTTAATTGATTAAATTTAGGG
1 TAAAGTTTAGGGTTTAGGGTTAATTAATTAAATTTAGGG
16458880 TTAATTGATA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
38 18 0.50
39 14 0.39
40 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.40
Consensus pattern (40 bp):
TAAAGTTTAGGGTTTAGGGTTAATTAATTAAATTTAGGGA
Found at i:16459276 original size:7 final size:7
Alignment explanation
Indices: 16459266--16459291 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
16459256 CTATTAATTT
16459266 TAAATAC
1 TAAATAC
16459273 TAAATAC
1 TAAATAC
16459280 TAAATAC
1 TAAATAC
16459287 TAAAT
1 TAAAT
16459292 TAGAGTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.31
Consensus pattern (7 bp):
TAAATAC
Found at i:16459650 original size:126 final size:126
Alignment explanation
Indices: 16459423--16459932 Score: 655
Period size: 126 Copynumber: 4.0 Consensus size: 126
16459413 TTTCTGCAAG
* * * * *
16459423 AATAATTATGAGTAGACGTTTCTAAACAAATAGTGTCGAAAAATGCTTCAAGTAGGATGCACTGT
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGTC-AAAAACGCTTCAAGCAGGATGCACTGT
* * * *
16459488 CAGCAAAATTTTTGGAAAAAGCTCCCACATGAACGCTTTTTTGCTACAGTAGTTCGTAGAAA
65 CAGCAAAATTTCTAGAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * * *
16459550 AATAATTCTGAA-TAGACGTTTCTGAACATATAATGTCAAAAACGTTTCAAGCATGATGCACTAT
1 AATAATTCT-AAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGT
* * * *
16459614 CAGTAAAATTTCTAGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGTTTGTAGAAA
65 CAGCAAAATTTCTAGAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
16459676 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGTCAAAAATGCTTCAAGCATGATGCACTGTC
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
** * * * * *
16459741 AATAAAATTTC-AGAAAAAAGCTCCCATGTGGATGCTCTTTTGCTATAGTAGTTCATAGAAA
66 AGCAAAATTTCTAG-AAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * *
16459802 AATAACTCTAAGTAGACGTTTCTGAACAAATAGTGTCGAAAACACTTCAAGTAGGATGCACTGTC
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
* * *
16459867 AGCAAAATTTCAAAAAAAAAAGCTCCCACGTGAATGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTC--TAGAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
16459930 AAT
1 AAT
16459933 GAGGCTATAA
Statistics
Matches: 334, Mismatches: 43, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
125 4 0.01
126 252 0.75
127 30 0.09
128 47 0.14
129 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (126 bp):
AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTAGAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:16463134 original size:29 final size:29
Alignment explanation
Indices: 16463102--16463192 Score: 130
Period size: 29 Copynumber: 3.2 Consensus size: 29
16463092 GGGCCTACCT
16463102 GGCCATATAAATGTGATTTGGGCCTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
* *
16463131 GGCCATATACAGGTGATTTGGGCCTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
* * *
16463160 GGCCATATGAATATGA-TTGGGCTTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
16463188 GGCCA
1 GGCCA
16463193 GATACAGGTA
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 16 0.29
29 39 0.71
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
GGCCATATAAATGTGATTTGGGCCTAATG
Found at i:16467691 original size:48 final size:47
Alignment explanation
Indices: 16467623--16467757 Score: 173
Period size: 48 Copynumber: 2.8 Consensus size: 47
16467613 ATGCAAACAT
*
16467623 CATAAATGAAAAAAAAATCAAACAGTATTGAAATTGTAATTATAA-TTG
1 CATAAATGAAAAAAATATCAAACAGTATTGAAATT-TAATTA-AATTTG
* *
16467671 CATAAATGAATAAAATATCAAACAATATTGCAAATTTAATTAAATTTG
1 CATAAATGAAAAAAATATCAAACAGTATTG-AAATTTAATTAAATTTG
* * *
16467719 CATAAATTAAAAAAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAAAAATATCAAACAGTATTG-AAATTTAA
16467758 AACTATCACT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
47 2 0.03
48 69 0.91
49 5 0.07
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.31
Consensus pattern (47 bp):
CATAAATGAAAAAAATATCAAACAGTATTGAAATTTAATTAAATTTG
Found at i:16467939 original size:22 final size:22
Alignment explanation
Indices: 16467895--16467940 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
16467885 AACAAACAAA
* *
16467895 TTTGATAGAATTTTGATAGAAT
1 TTTGATAGAATTTTGAAAAAAT
16467917 TTTGATAGAATTTTGAAAAAAT
1 TTTGATAGAATTTTGAAAAAAT
16467939 TT
1 TT
16467941 CAATGAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (22 bp):
TTTGATAGAATTTTGAAAAAAT
Found at i:16467940 original size:11 final size:11
Alignment explanation
Indices: 16467895--16467932 Score: 76
Period size: 11 Copynumber: 3.5 Consensus size: 11
16467885 AACAAACAAA
16467895 TTTGATAGAAT
1 TTTGATAGAAT
16467906 TTTGATAGAAT
1 TTTGATAGAAT
16467917 TTTGATAGAAT
1 TTTGATAGAAT
16467928 TTTGA
1 TTTGA
16467933 AAAAATTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.47
Consensus pattern (11 bp):
TTTGATAGAAT
Found at i:16471884 original size:29 final size:30
Alignment explanation
Indices: 16471852--16471909 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
16471842 ATTATGAAAA
16471852 ATATATTTTTATAAAAA-TATAAAAATATT
1 ATATATTTTTATAAAAATTATAAAAATATT
* *
16471881 ATATATTTTTTTAAAAATTATATAAATAT
1 ATATATTTTTATAAAAATTATAAAAATAT
16471910 ATTTAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (30 bp):
ATATATTTTTATAAAAATTATAAAAATATT
Found at i:16471891 original size:30 final size:29
Alignment explanation
Indices: 16471852--16471909 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
16471842 ATTATGAAAA
16471852 ATATATTTTTATAAAAA-TATAAAAATATT
1 ATATATTTTT-TAAAAATTATAAAAATATT
*
16471881 ATATATTTTTTTAAAAATTATATAAATAT
1 ATATA-TTTTTTAAAAATTATAAAAATAT
16471910 ATTTAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 11 0.42
30 15 0.58
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
ATATATTTTTTAAAAATTATAAAAATATT
Found at i:16471895 original size:21 final size:22
Alignment explanation
Indices: 16471871--16471922 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
16471861 TATAAAAATA
* * *
16471871 TAAAAATAT-TATATATTTTTT
1 TAAAAATATATATAAATATATT
16471892 TAAAAAT-TATATAAATATATT
1 TAAAAATATATATAAATATATT
16471913 TAAAAATATA
1 TAAAAATATA
16471923 AAATGTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 23 0.88
22 2 0.08
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TAAAAATATATATAAATATATT
Found at i:16471923 original size:18 final size:18
Alignment explanation
Indices: 16471890--16471937 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 18
16471880 TATATATTTT
*
16471890 TTTAAAAATTATATAAATATA
1 TTTAAAAA-TATA-AAAT-GA
*
16471911 TTTAAAAATATAAAATGT
1 TTTAAAAATATAAAATGA
16471929 TTTAAAAAT
1 TTTAAAAAT
16471938 TTGAACAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.36
19 4 0.16
20 4 0.16
21 8 0.32
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (18 bp):
TTTAAAAATATAAAATGA
Found at i:16473004 original size:21 final size:20
Alignment explanation
Indices: 16472957--16473000 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
16472947 AAAATCCACG
16472957 AGTTAACCAAAAACTAATTA
1 AGTTAACCAAAAACTAATTA
*
16472977 AGTTAACCAAAAACTGATTA
1 AGTTAACCAAAAACTAATTA
16472997 AGTT
1 AGTT
16473001 TAACATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (20 bp):
AGTTAACCAAAAACTAATTA
Found at i:16473771 original size:87 final size:87
Alignment explanation
Indices: 16473633--16473820 Score: 232
Period size: 87 Copynumber: 2.2 Consensus size: 87
16473623 GTAGATTAAG
* * * * * *
16473633 CACCAGTATTTGCAGATGAACTGCCAGTAGATTGTGGATGCACAACATATTTGCAAATAAAAGCT
1 CACCAGTGTTTGCAAATAAACTGCCAGTAGATTATGAATACACAACATATTTGCAAATAAAAGCT
* *
16473698 GCCAATAAGTTTGTGGATAAAC
66 GCCAATAAATTCGTGGATAAAC
* * * * * *
16473720 CATCAGTGTTTGCAAATAAACTGCTAGTAGGTTATGAATACACAACGTATTTGTAGATAAAAGCT
1 CACCAGTGTTTGCAAATAAACTGCCAGTAGATTATGAATACACAACATATTTGCAAATAAAAGCT
* *
16473785 GCTAGTAAATTCGTGGATAAAC
66 GCCAATAAATTCGTGGATAAAC
16473807 CACCAGTGTTTGCA
1 CACCAGTGTTTGCA
16473821 GATCAACACT
Statistics
Matches: 84, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (87 bp):
CACCAGTGTTTGCAAATAAACTGCCAGTAGATTATGAATACACAACATATTTGCAAATAAAAGCT
GCCAATAAATTCGTGGATAAAC
Found at i:16474984 original size:618 final size:618
Alignment explanation
Indices: 16473808--16475045 Score: 2476
Period size: 618 Copynumber: 2.0 Consensus size: 618
16473798 TGGATAAACC
16473808 ACCAGTGTTTGCAGATCAACACTTTCTCCTTTCAATCATCCCACCCAATGTATTTCAGTGTGACA
1 ACCAGTGTTTGCAGATCAACACTTTCTCCTTTCAATCATCCCACCCAATGTATTTCAGTGTGACA
16473873 TGCTAGTAACAGTACAATACAGAACCAGTAGACATGCTAATATGTATTCAGTTCAATAGTAACAG
66 TGCTAGTAACAGTACAATACAGAACCAGTAGACATGCTAATATGTATTCAGTTCAATAGTAACAG
16473938 TAGGCATGTTTAACATGTATTCGGTTCAATAGTGGCAGTAGACATGCAACCAATAATATAGTGGC
131 TAGGCATGTTTAACATGTATTCGGTTCAATAGTGGCAGTAGACATGCAACCAATAATATAGTGGC
16474003 AAGAATAACACTATCAATTCATTAGAAAAACAGTGACAATAGATAAGAAATATTCACATATAATC
196 AAGAATAACACTATCAATTCATTAGAAAAACAGTGACAATAGATAAGAAATATTCACATATAATC
16474068 ACTAAATAGTAGTAGTTCAATCATCAAATAACATATTTTAGCATGTTCATAATATTAGGGACTCA
261 ACTAAATAGTAGTAGTTCAATCATCAAATAACATATTTTAGCATGTTCATAATATTAGGGACTCA
16474133 ATCGAGTGAACAAAATTTTTAGAAACAGTTCGGGGATTATACAATGACTAAACTGATGATTCACA
326 ATCGAGTGAACAAAATTTTTAGAAACAGTTCGGGGATTATACAATGACTAAACTGATGATTCACA
16474198 AAATTTTGGGCAAAATTGTAAAACAGGGGTCACATGACTGTGTGAGAGGGTTACACAGCCGTGTG
391 AAATTTTGGGCAAAATTGTAAAACAGGGGTCACATGACTGTGTGAGAGGGTTACACAGCCGTGTG
16474263 TCTAGACCGTGTAACAGACTGTGGCAGTGTGACAAGTGCAAAAATTAACCTATAGGCGAGACACG
456 TCTAGACCGTGTAACAGACTGTGGCAGTGTGACAAGTGCAAAAATTAACCTATAGGCGAGACACG
16474328 ACCGTGTGGCAGGCCGTGTGGAAGGGTTTTGGCCATGTGGTTCATGAACTAACCTAAGGTTTCCA
521 ACCGTGTGGCAGGCCGTGTGGAAGGGTTTTGGCCATGTGGTTCATGAACTAACCTAAGGTTTCCA
16474393 GGGAAAATGGCCGTGTAGGGGGCCATGTGGTCT
586 GGGAAAATGGCCGTGTAGGGGGCCATGTGGTCT
16474426 ACCAGTGTTTGCAGATCAACACTTTCTCCTTTCAATCATCCCACCCAATGTATTTCAGTGTGACA
1 ACCAGTGTTTGCAGATCAACACTTTCTCCTTTCAATCATCCCACCCAATGTATTTCAGTGTGACA
16474491 TGCTAGTAACAGTACAATACAGAACCAGTAGACATGCTAATATGTATTCAGTTCAATAGTAACAG
66 TGCTAGTAACAGTACAATACAGAACCAGTAGACATGCTAATATGTATTCAGTTCAATAGTAACAG
16474556 TAGGCATGTTTAACATGTATTCGGTTCAATAGTGGCAGTAGACATGCAACCAATAATATAGTGGC
131 TAGGCATGTTTAACATGTATTCGGTTCAATAGTGGCAGTAGACATGCAACCAATAATATAGTGGC
16474621 AAGAATAACACTATCAATTCATTAGAAAAACAGTGACAATAGATAAGAAATATTCACATATAATC
196 AAGAATAACACTATCAATTCATTAGAAAAACAGTGACAATAGATAAGAAATATTCACATATAATC
16474686 ACTAAATAGTAGTAGTTCAATCATCAAATAACATATTTTAGCATGTTCATAATATTAGGGACTCA
261 ACTAAATAGTAGTAGTTCAATCATCAAATAACATATTTTAGCATGTTCATAATATTAGGGACTCA
16474751 ATCGAGTGAACAAAATTTTTAGAAACAGTTCGGGGATTATACAATGACTAAACTGATGATTCACA
326 ATCGAGTGAACAAAATTTTTAGAAACAGTTCGGGGATTATACAATGACTAAACTGATGATTCACA
16474816 AAATTTTGGGCAAAATTGTAAAACAGGGGTCACATGACTGTGTGAGAGGGTTACACAGCCGTGTG
391 AAATTTTGGGCAAAATTGTAAAACAGGGGTCACATGACTGTGTGAGAGGGTTACACAGCCGTGTG
16474881 TCTAGACCGTGTAACAGACTGTGGCAGTGTGACAAGTGCAAAAATTAACCTATAGGCGAGACACG
456 TCTAGACCGTGTAACAGACTGTGGCAGTGTGACAAGTGCAAAAATTAACCTATAGGCGAGACACG
16474946 ACCGTGTGGCAGGCCGTGTGGAAGGGTTTTGGCCATGTGGTTCATGAACTAACCTAAGGTTTCCA
521 ACCGTGTGGCAGGCCGTGTGGAAGGGTTTTGGCCATGTGGTTCATGAACTAACCTAAGGTTTCCA
16475011 GGGAAAATGGCCGTGTAGGGGGCCATGTGGTCT
586 GGGAAAATGGCCGTGTAGGGGGCCATGTGGTCT
16475044 AC
1 AC
16475046 TTGTGTTGTC
Statistics
Matches: 620, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
618 620 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (618 bp):
ACCAGTGTTTGCAGATCAACACTTTCTCCTTTCAATCATCCCACCCAATGTATTTCAGTGTGACA
TGCTAGTAACAGTACAATACAGAACCAGTAGACATGCTAATATGTATTCAGTTCAATAGTAACAG
TAGGCATGTTTAACATGTATTCGGTTCAATAGTGGCAGTAGACATGCAACCAATAATATAGTGGC
AAGAATAACACTATCAATTCATTAGAAAAACAGTGACAATAGATAAGAAATATTCACATATAATC
ACTAAATAGTAGTAGTTCAATCATCAAATAACATATTTTAGCATGTTCATAATATTAGGGACTCA
ATCGAGTGAACAAAATTTTTAGAAACAGTTCGGGGATTATACAATGACTAAACTGATGATTCACA
AAATTTTGGGCAAAATTGTAAAACAGGGGTCACATGACTGTGTGAGAGGGTTACACAGCCGTGTG
TCTAGACCGTGTAACAGACTGTGGCAGTGTGACAAGTGCAAAAATTAACCTATAGGCGAGACACG
ACCGTGTGGCAGGCCGTGTGGAAGGGTTTTGGCCATGTGGTTCATGAACTAACCTAAGGTTTCCA
GGGAAAATGGCCGTGTAGGGGGCCATGTGGTCT
Found at i:16477746 original size:53 final size:53
Alignment explanation
Indices: 16477673--16477820 Score: 188
Period size: 53 Copynumber: 2.8 Consensus size: 53
16477663 TTTGAAGAAT
* * *
16477673 CATATTGTGTAAGACCGTAATTGGTGGGTTATGACATCATATAAAAAGAAGAC
1 CATATCGTGTAAGACAGTAATTGGTGGGTTATGACATCATATAAAAAGAAAAC
* * * * *
16477726 CATATCGTGTAAAACAGTAATTGGTGGGTTATGGCATCAAATAGAAAGAAAAT
1 CATATCGTGTAAGACAGTAATTGGTGGGTTATGACATCATATAAAAAGAAAAC
* ** *
16477779 CATATCATGTAAGATTGTAACTGGTGGGTTATGACATCATAT
1 CATATCGTGTAAGACAGTAATTGGTGGGTTATGACATCATAT
16477821 GAGAAAAATT
Statistics
Matches: 80, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 80 1.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (53 bp):
CATATCGTGTAAGACAGTAATTGGTGGGTTATGACATCATATAAAAAGAAAAC
Found at i:16478035 original size:61 final size:61
Alignment explanation
Indices: 16477940--16478105 Score: 242
Period size: 61 Copynumber: 2.7 Consensus size: 61
16477930 ACCAGGAAAT
* *
16477940 GAAAGCCTTTGTGGCGAATATTGAATGTAAAGGAACGCCTTTGTAACAAAACTCTGGACAA
1 GAAAGCCTTTGTGGCGAGTATTGAATGTAAAGGAATGCCTTTGTAACAAAACTCTGGACAA
* * * * *
16478001 GAAAGCCTTTGTAGAGAGTATTAAATGTAAAGGAATGCCTTTGTAGCAAAACTCTGGACAT
1 GAAAGCCTTTGTGGCGAGTATTGAATGTAAAGGAATGCCTTTGTAACAAAACTCTGGACAA
* * *
16478062 GAAAGCTTTTGTGGCGAGTACTGAATGTAAATGAATGCCTTTGT
1 GAAAGCCTTTGTGGCGAGTATTGAATGTAAAGGAATGCCTTTGT
16478106 GGCGCAATTT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
61 92 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (61 bp):
GAAAGCCTTTGTGGCGAGTATTGAATGTAAAGGAATGCCTTTGTAACAAAACTCTGGACAA
Found at i:16486892 original size:17 final size:17
Alignment explanation
Indices: 16486862--16486922 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
16486852 AAATCTCTCT
16486862 ATAATAATAATAAAATTA
1 ATAATAA-AATAAAATTA
16486880 ATAATAAAATAAAA-TA
1 ATAATAAAATAAAATTA
* * *
16486896 GTGAAAAAAATAAAATAA
1 AT-AATAAAATAAAATTA
*
16486914 AAAATAAAA
1 ATAATAAAA
16486923 AAACAACATT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
16 3 0.09
17 24 0.69
18 8 0.23
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (17 bp):
ATAATAAAATAAAATTA
Found at i:16486924 original size:22 final size:22
Alignment explanation
Indices: 16486862--16486925 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 22
16486852 AAATCTCTCT
16486862 ATAATAATAATAAAATTAATAATAAA
1 ATAA-AATAATAAAA--AA-AATAAA
* *
16486888 ATAAAATAGTGAAAAAAATAAA
1 ATAAAATAATAAAAAAAATAAA
16486910 ATAAAA-AATAAAAAAA
1 ATAAAATAATAAAAAAA
16486926 CAACATTTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 8 0.24
22 12 0.35
23 2 0.06
25 8 0.24
26 4 0.12
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (22 bp):
ATAAAATAATAAAAAAAATAAA
Found at i:16492577 original size:45 final size:45
Alignment explanation
Indices: 16492436--16492585 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 45
16492426 CCTTTGCACC
* * * *
16492436 ACGATGTGGATGAACCACTAAGCGTTGTAGATAAAA--TGCTAGT
1 ACGATGTGGATAAACCACTAATCGATGCAGATAAAAGTTGCTAGT
** * * *
16492479 ACGATGTAAATAAATCACTAATC-AGTGCATATAAAAGTGGCTAGT
1 ACGATGTGGATAAACCACTAATCGA-TGCAGATAAAAGTTGCTAGT
* * *
16492524 TC-AGTGTGGATAAACCACTATTCGATGCAGATAAAAGTTGCTAAT
1 ACGA-TGTGGATAAACCACTAATCGATGCAGATAAAAGTTGCTAGT
*
16492569 ACGATGTGGATTAACCA
1 ACGATGTGGATAAACCA
16492586 TTAAACGCTG
Statistics
Matches: 82, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
43 27 0.33
44 1 0.01
45 52 0.63
46 2 0.02
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (45 bp):
ACGATGTGGATAAACCACTAATCGATGCAGATAAAAGTTGCTAGT
Found at i:16494267 original size:63 final size:63
Alignment explanation
Indices: 16494196--16494401 Score: 263
Period size: 63 Copynumber: 3.3 Consensus size: 63
16494186 ACAAACGGGT
*
16494196 ATGTGTCCAGGTCGTGTAACTCACTGACTTCAGATTTGAGTCACACGGGCAAGACACACGAGC
1 ATGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTTGAGTCACACGGGCAAGACACACGAGC
* * * * * * * *
16494259 ATGTGTCCAGGCCGTGTAACTCTCTGACTTTAGATTGGAGTCATATGGGTAAGACACAAGGGC
1 ATGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTTGAGTCACACGGGCAAGACACACGAGC
* * *
16494322 ATGTGTCCAGGCCGTGTAACTCATTGACTTCAGATTTGAGACACACGGGCAAGGCACAC-AGGC
1 ATGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTTGAGTCACACGGGCAAGACACACGA-GC
* *
16494385 GTGTG-CCAGGCTGTGTA
1 ATGTGTCCAGGCCGTGTA
16494402 GAGCCACATA
Statistics
Matches: 120, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
62 11 0.09
63 109 0.91
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (63 bp):
ATGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTTGAGTCACACGGGCAAGACACACGAGC
Found at i:16499300 original size:15 final size:15
Alignment explanation
Indices: 16499282--16499311 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
16499272 TTTATTCTTT
16499282 CTTTTATTATTATTA
1 CTTTTATTATTATTA
16499297 CTTTTATTATTATTA
1 CTTTTATTATTATTA
16499312 ATATTATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTTTATTATTATTA
Found at i:16499318 original size:15 final size:15
Alignment explanation
Indices: 16499285--16499318 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
16499275 ATTCTTTCTT
* *
16499285 TTATTATTATTACTT
1 TTATTATTATTAATA
16499300 TTATTATTATTAATA
1 TTATTATTATTAATA
16499315 TTAT
1 TTAT
16499319 AACATATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATTATTATTAATA
Found at i:16500022 original size:50 final size:50
Alignment explanation
Indices: 16499942--16500046 Score: 142
Period size: 50 Copynumber: 2.1 Consensus size: 50
16499932 TCTAATTTGA
* * *
16499942 CATATCAAATTACGAAAGATCAATTAACCTGCAAATACT-GATGGTTCAAC
1 CATAACAAATTACGAAAGATCAATTAACCTGCAAACACTAG-TCGTTCAAC
*
16499992 CATAACAAATTAC-AACATATCAATTAACCTGCAAACACTAGTCGTTCAAC
1 CATAACAAATTACGAA-AGATCAATTAACCTGCAAACACTAGTCGTTCAAC
16500042 CATAA
1 CATAA
16500047 TTTTACTAGC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
49 2 0.04
50 46 0.94
51 1 0.02
ACGTcount: A:0.44, C:0.23, G:0.09, T:0.25
Consensus pattern (50 bp):
CATAACAAATTACGAAAGATCAATTAACCTGCAAACACTAGTCGTTCAAC
Found at i:16503335 original size:10 final size:9
Alignment explanation
Indices: 16503317--16503354 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
16503307 ATCTTAATTA
16503317 TTTTTATAT
1 TTTTTATAT
16503326 TTTTTAATAT
1 TTTTT-ATAT
*
16503336 TTTTTATAA
1 TTTTTATAT
16503345 TTTTTA-AT
1 TTTTTATAT
16503353 TT
1 TT
16503355 ATTTGTCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 3 0.12
9 14 0.54
10 9 0.35
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTTTATAT
Found at i:16506190 original size:20 final size:21
Alignment explanation
Indices: 16506162--16506214 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
16506152 ATTACACAAT
*
16506162 AAATTAAAATAATTT-TCAAA
1 AAATTAAAATAATTTATAAAA
*
16506182 AATTTAAAAT-ATTTATAAAA
1 AAATTAAAATAATTTATAAAA
16506202 AAATTATAAATAA
1 AAATTA-AAATAA
16506215 AAAATTAGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 4 0.15
20 18 0.67
21 4 0.15
22 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
AAATTAAAATAATTTATAAAA
Found at i:16507126 original size:14 final size:16
Alignment explanation
Indices: 16507107--16507139 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
16507097 TCAGTTAATA
16507107 TTATATAA-GTTT-TT
1 TTATATAATGTTTCTT
16507121 TTATATAATGTTTCTT
1 TTATATAATGTTTCTT
16507137 TTA
1 TTA
16507140 GCTCTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 4 0.24
16 5 0.29
ACGTcount: A:0.27, C:0.03, G:0.06, T:0.64
Consensus pattern (16 bp):
TTATATAATGTTTCTT
Found at i:16508284 original size:19 final size:20
Alignment explanation
Indices: 16508260--16508320 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 20
16508250 TCCTAAGTGA
16508260 AATTAAAATA-ATAAATTTT
1 AATTAAAATATATAAATTTT
* *
16508279 AATTAAAATATTATTAATTAT
1 AATTAAAATA-TATAAATTTT
*
16508300 ATTTAAAATATATAAATTTT
1 AATTAAAATATATAAATTTT
16508320 A
1 A
16508321 TATTTTATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 10 0.29
20 9 0.26
21 16 0.46
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTAAAATATATAAATTTT
Found at i:16510172 original size:31 final size:31
Alignment explanation
Indices: 16510110--16510177 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
16510100 GTTAAATACC
16510110 CAATAACTTAAATAAAAACTTTCTAACAGTT
1 CAATAACTTAAATAAAAACTTTCTAACAGTT
* * *
16510141 CAATGACTTAAATGAAAACTTTC-ATATAGTT
1 CAATAACTTAAATAAAAACTTTCTA-ACAGTT
16510172 CAATAA
1 CAATAA
16510178 TCACTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.03
31 31 0.97
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (31 bp):
CAATAACTTAAATAAAAACTTTCTAACAGTT
Found at i:16513487 original size:130 final size:130
Alignment explanation
Indices: 16513254--16513516 Score: 508
Period size: 130 Copynumber: 2.0 Consensus size: 130
16513244 TATATTTGAT
16513254 CAAATAACATCTAAGAAAAGATACCAATAAAAATTGGAGAGTGTTTGTGTTAATATGTTAGAATT
1 CAAATAACATCTAAGAAAAGATACCAATAAAAATTGGAGAGTGTTTGTGTTAATATGTTAGAATT
16513319 GTTTATAAAAAATGAGGTATTAAAGAAATTGTTTTTCAAAAAGGGTATATTGGATTTTATTCGAA
66 GTTTATAAAAAATGAGGTATTAAAGAAATTGTTTTTCAAAAAGGGTATATTGGATTTTATTCGAA
*
16513384 CAAATAACATCTAAGAAAAGATACCAATAAAAATTGGAGAGTGTTTGTGTTAGTATGTTAGAATT
1 CAAATAACATCTAAGAAAAGATACCAATAAAAATTGGAGAGTGTTTGTGTTAATATGTTAGAATT
*
16513449 GTTTATAAAAAATGGGGTATTAAAGAAATTGTTTTTCAAAAAGGGTATATTGGATTTTATTCGAA
66 GTTTATAAAAAATGAGGTATTAAAGAAATTGTTTTTCAAAAAGGGTATATTGGATTTTATTCGAA
16513514 CAA
1 CAA
16513517 CAATGGCACC
Statistics
Matches: 131, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 131 1.00
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34
Consensus pattern (130 bp):
CAAATAACATCTAAGAAAAGATACCAATAAAAATTGGAGAGTGTTTGTGTTAATATGTTAGAATT
GTTTATAAAAAATGAGGTATTAAAGAAATTGTTTTTCAAAAAGGGTATATTGGATTTTATTCGAA
Found at i:16516635 original size:40 final size:40
Alignment explanation
Indices: 16516580--16516655 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
16516570 TGCAGTACCT
* ** *
16516580 TATGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCATA
1 TATGGTGTGCAGGGATGGATAAGTCAATTTTATCCCCATA
*
16516620 TATGGTGTGCAGGGATGGGTAAGTCAATTTTATCCC
1 TATGGTGTGCAGGGATGGATAAGTCAATTTTATCCC
16516656 TACGTGGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (40 bp):
TATGGTGTGCAGGGATGGATAAGTCAATTTTATCCCCATA
Found at i:16531648 original size:13 final size:13
Alignment explanation
Indices: 16531632--16531664 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
16531622 TTTAATTAAA
*
16531632 TTAGTTAATTAGT
1 TTAGATAATTAGT
16531645 TTAGATAATTAGT
1 TTAGATAATTAGT
16531658 TTA-ATAA
1 TTAGATAA
16531665 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:16535021 original size:29 final size:30
Alignment explanation
Indices: 16534984--16535042 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
16534974 TTCCCGAGCC
*
16534984 TAGGGGCAAAAGTGTAA-TTTGCAAAAGTT
1 TAGGGGCAAAAATGTAATTTTGCAAAAGTT
16535013 TAGGGGCAAAAATGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAATGTAATTTTGCAAAAGTT
16535043 CGTATTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 16 0.57
30 12 0.43
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTTTGCAAAAGTT
Found at i:16545000 original size:5 final size:5
Alignment explanation
Indices: 16544990--16545093 Score: 58
Period size: 5 Copynumber: 20.4 Consensus size: 5
16544980 TTGAATCCTC
*
16544990 TTATT TTA-T TTA-T TTA-G TTATT CTTATTT TTATT TTATT TTA-T TTATT
1 TTATT TTATT TTATT TTATT TTATT -TTA-TT TTATT TTATT TTATT TTATT
* * *
16545038 TTATTT TTATT CTTCTT TTGATTT TTCTT TTCATT TCAATT TTA-- TTATT
1 TTA-TT TTATT -TTATT TT-A-TT TTATT TT-ATT T-TATT TTATT TTATT
16545087 TTATT TT
1 TTATT TT
16545094 GAAAGACATA
Statistics
Matches: 79, Mismatches: 8, Indels: 24
0.71 0.07 0.22
Matches are distributed among these distances:
3 3 0.04
4 15 0.19
5 33 0.42
6 22 0.28
7 6 0.08
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (5 bp):
TTATT
Found at i:16545004 original size:9 final size:9
Alignment explanation
Indices: 16544990--16545043 Score: 60
Period size: 9 Copynumber: 6.2 Consensus size: 9
16544980 TTGAATCCTC
16544990 TTATTTTAT
1 TTATTTTAT
*
16544999 TTA-TTTAG
1 TTATTTTAT
16545007 TTATTCTTAT
1 TTATT-TTAT
*
16545017 TT-TTAT-T
1 TTATTTTAT
16545024 TTATTTTAT
1 TTATTTTAT
16545033 TTATTTTAT
1 TTATTTTAT
16545042 TT
1 TT
16545044 TTATTCTTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
7 3 0.08
8 11 0.30
9 18 0.49
10 5 0.14
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (9 bp):
TTATTTTAT
Found at i:16545018 original size:14 final size:11
Alignment explanation
Indices: 16544993--16545093 Score: 57
Period size: 12 Copynumber: 8.8 Consensus size: 11
16544983 AATCCTCTTA
16544993 TTTTA-TTTAT
1 TTTTATTTTAT
16545003 TTAGTTATTCTTAT
1 TT--TTATT-TTAT
16545017 TTTTATTTTA-
1 TTTTATTTTAT
16545027 TTTTA-TTTA-
1 TTTTATTTTAT
16545036 TTTTATTTTTAT
1 TTTTA-TTTTAT
* *
16545048 TCTTCTTTTGAT
1 TTTTATTTT-AT
*
16545060 TTTTCTTTTCAT
1 TTTTATTTT-AT
**
16545072 TTCAATTTTATT
1 TTTTATTTTA-T
16545084 ATTTTATTTT
1 -TTTTATTTT
16545094 GAAAGACATA
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
9 9 0.12
10 7 0.10
11 12 0.17
12 30 0.42
13 8 0.11
14 6 0.08
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:16545041 original size:25 final size:25
Alignment explanation
Indices: 16544988--16545048 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
16544978 CATTGAATCC
16544988 TCTTA-TTTTA-TTTATTTAGTTAT
1 TCTTATTTTTATTTTATTTAGTTAT
*
16545011 TCTTATTTTTATTTTATTTTATTTAT
1 TCTTATTTTTATTTTA-TTTAGTTAT
16545037 T-TTATTTTTATT
1 TCTTATTTTTATT
16545049 CTTCTTTTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
23 5 0.15
24 5 0.15
25 15 0.44
26 9 0.26
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (25 bp):
TCTTATTTTTATTTTATTTAGTTAT
Found at i:16546940 original size:21 final size:21
Alignment explanation
Indices: 16546916--16546955 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
16546906 AGAGCACCAA
* *
16546916 GAGCCAAAAGGAGCCAAAAAC
1 GAGCCAAAAAGAGACAAAAAC
*
16546937 GAGCTAAAAAGAGACAAAA
1 GAGCCAAAAAGAGACAAAA
16546956 TGGACCAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.17, G:0.23, T:0.03
Consensus pattern (21 bp):
GAGCCAAAAAGAGACAAAAAC
Found at i:16548949 original size:13 final size:13
Alignment explanation
Indices: 16548931--16548960 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
16548921 AGTTGGGAGA
*
16548931 AGTACTTGCCTTT
1 AGTACTTGCCTCT
16548944 AGTACTTGCCTCT
1 AGTACTTGCCTCT
16548957 AGTA
1 AGTA
16548961 TACAGATGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (13 bp):
AGTACTTGCCTCT
Found at i:16550875 original size:23 final size:23
Alignment explanation
Indices: 16550844--16550888 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
16550834 AATGTTATAC
*
16550844 CTAGAATGAATATCTGATCTGTT
1 CTAGAATGAATATATGATCTGTT
* *
16550867 CTAGTATGAATGTATGATCTGT
1 CTAGAATGAATATATGATCTGT
16550889 CTTTCTGCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (23 bp):
CTAGAATGAATATATGATCTGTT
Found at i:16551100 original size:40 final size:40
Alignment explanation
Indices: 16551035--16551112 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
16551025 TGCAGTACCT
* * * *
16551035 TATGGTGTGTAGGGATGGATGGGTCGATTTTCTCCCCATA
1 TATGATGTGCAGGGATGGATAGGTCGATTTTATCCCCATA
*
16551075 TATGATGTGCAGGGATGGGTAGGTCGATTTTATCCCCA
1 TATGATGTGCAGGGATGGATAGGTCGATTTTATCCCCA
16551113 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.19, C:0.15, G:0.32, T:0.33
Consensus pattern (40 bp):
TATGATGTGCAGGGATGGATAGGTCGATTTTATCCCCATA
Found at i:16553755 original size:24 final size:24
Alignment explanation
Indices: 16553728--16553774 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
16553718 TTTAGAGAAT
16553728 TTTGTGTTTACA-TTTTGAGGGTTA
1 TTTGTGTTTA-AGTTTTGAGGGTTA
* *
16553752 TTTGTTTTTAAGTTTTTAGGGTT
1 TTTGTGTTTAAGTTTTGAGGGTT
16553775 TAGTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.15, C:0.02, G:0.23, T:0.60
Consensus pattern (24 bp):
TTTGTGTTTAAGTTTTGAGGGTTA
Found at i:16564926 original size:16 final size:16
Alignment explanation
Indices: 16564905--16564936 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
16564895 TATGTATAGA
16564905 CATGTTCATGAAAAGT
1 CATGTTCATGAAAAGT
16564921 CATGTTCATGAAAAGT
1 CATGTTCATGAAAAGT
16564937 ATGAATGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (16 bp):
CATGTTCATGAAAAGT
Found at i:16569179 original size:13 final size:13
Alignment explanation
Indices: 16569161--16569185 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16569151 AGTAATCGTA
16569161 CACGGGCGTGTCT
1 CACGGGCGTGTCT
16569174 CACGGGCGTGTC
1 CACGGGCGTGTC
16569186 CCTGCCGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.40, T:0.20
Consensus pattern (13 bp):
CACGGGCGTGTCT
Found at i:16579674 original size:34 final size:34
Alignment explanation
Indices: 16579631--16579696 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
16579621 TTGTTAGTAG
*
16579631 GTTTAACTTCATTTAAGTCATGCATATATATACC
1 GTTTAACTTCATATAAGTCATGCATATATATACC
16579665 GTTTAACTTCATATAAGTCATGCATATATATA
1 GTTTAACTTCATATAAGTCATGCATATATATA
16579697 TATTATAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (34 bp):
GTTTAACTTCATATAAGTCATGCATATATATACC
Found at i:16584801 original size:46 final size:45
Alignment explanation
Indices: 16584743--16584913 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 45
16584733 ACCTTTCGTA
* * *
16584743 GCCGATACATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCAAG
*
16584789 GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCTT-GTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTTCGTCTCAAG
** * *
16584835 GCTAATGCCATGTCCCAGACATGGTCTTACACTAGC-TC-TCATAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTC-TCA-A-G
16584883 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
16584914 AGCTCACAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
45 3 0.03
46 54 0.51
47 30 0.28
48 19 0.18
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCAAG
Found at i:16585288 original size:30 final size:30
Alignment explanation
Indices: 16585254--16585311 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
16585244 AATTCACATA
* *
16585254 TTTGGTAAAATGACCATTTTGCCCCTAGAT
1 TTTGGCAAAATGACCATTTTACCCCTAGAT
16585284 TTTGGCAAAATGACCATTTTACCCCTAG
1 TTTGGCAAAATGACCATTTTACCCCTAG
16585312 GTTCGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAT
Found at i:16592527 original size:4 final size:4
Alignment explanation
Indices: 16592518--16592598 Score: 63
Period size: 4 Copynumber: 19.8 Consensus size: 4
16592508 CCCTTTTCTA
*** * * * **
16592518 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TCAAG TTTGC TCTC TGTA ACTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T-TTC TTT-C TTTC TTTC TTTC
*
16592568 TTTC TATC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
16592599 TTAACCTACT
Statistics
Matches: 59, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
4 56 0.95
5 3 0.05
ACGTcount: A:0.06, C:0.25, G:0.04, T:0.65
Consensus pattern (4 bp):
TTTC
Found at i:16598271 original size:18 final size:19
Alignment explanation
Indices: 16598227--16598272 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
16598217 ACTTTCTTGT
*
16598227 TAAC-ATAAAATTCTTAAA
1 TAACTATAAAATACTTAAA
16598245 TAACT-TAAAATACTT-AA
1 TAACTATAAAATACTTAAA
*
16598262 TAATTATAAAA
1 TAACTATAAAA
16598273 AATTCAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.35
Consensus pattern (19 bp):
TAACTATAAAATACTTAAA
Found at i:16605318 original size:17 final size:17
Alignment explanation
Indices: 16605296--16605339 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
16605286 TGTAATTATC
*
16605296 ACAATTCTTATTAAAT-T
1 ACAATTATT-TTAAATAT
16605313 ACAATTATTTTAAATAT
1 ACAATTATTTTAAATAT
16605330 ACAATTATTT
1 ACAATTATTT
16605340 CAATTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
ACAATTATTTTAAATAT
Found at i:16609727 original size:15 final size:17
Alignment explanation
Indices: 16609707--16609741 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
16609697 AAATCTCTAA
16609707 TTCTCC-TTCTTTTT-T
1 TTCTCCTTTCTTTTTCT
16609722 TTCTCCTTTCTTTTTCT
1 TTCTCCTTTCTTTTTCT
16609739 TTC
1 TTC
16609742 CTTTTCCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 8 0.44
17 4 0.22
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTCTCCTTTCTTTTTCT
Found at i:16609747 original size:16 final size:16
Alignment explanation
Indices: 16609707--16609745 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
16609697 AAATCTCTAA
16609707 TTCTCC-TTCTTTTTT
1 TTCTCCTTTCTTTTTT
*
16609722 TTCTCCTTTCTTTTTC
1 TTCTCCTTTCTTTTTT
16609738 TT-TCCTTT
1 TTCTCCTTT
16609746 TCCTCTCCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (16 bp):
TTCTCCTTTCTTTTTT
Found at i:16609780 original size:15 final size:16
Alignment explanation
Indices: 16609754--16609783 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
16609744 TTTCCTCTCC
16609754 TATTCGTTTTCTATTA
1 TATTCGTTTTCTATTA
16609770 TATTC-TTTTCTATT
1 TATTCGTTTTCTATT
16609784 CCATTTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.17, C:0.13, G:0.03, T:0.67
Consensus pattern (16 bp):
TATTCGTTTTCTATTA
Found at i:16613604 original size:37 final size:38
Alignment explanation
Indices: 16613557--16613634 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 38
16613547 AATTGAGAAG
16613557 GAAGATAGCTTCATTCGACCATTGTTTTTCTTACCTTT
1 GAAGATAGCTTCATTCGACCATTGTTTTTCTTACCTTT
*
16613595 GAAG-TAGCTTCATTCGGCCATTGTTTTTCTTACCTTT
1 GAAGATAGCTTCATTCGACCATTGTTTTTCTTACCTTT
16613632 GAA
1 GAA
16613635 ACCCTAATTG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 35 0.90
38 4 0.10
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (38 bp):
GAAGATAGCTTCATTCGACCATTGTTTTTCTTACCTTT
Found at i:16614465 original size:36 final size:36
Alignment explanation
Indices: 16614425--16614499 Score: 114
Period size: 36 Copynumber: 2.1 Consensus size: 36
16614415 CTAATGTAAT
* *
16614425 TGTTAATTTAATTGAACAAAAGTTTATGGATGTATA
1 TGTTAATTCAATTGAACAAAAGTTTATGGAAGTATA
* *
16614461 TGTTAATTCAATTGAATAGAAGTTTATGGAAGTATA
1 TGTTAATTCAATTGAACAAAAGTTTATGGAAGTATA
16614497 TGT
1 TGT
16614500 ATTTAGATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.41
Consensus pattern (36 bp):
TGTTAATTCAATTGAACAAAAGTTTATGGAAGTATA
Found at i:16614685 original size:71 final size:70
Alignment explanation
Indices: 16614557--16614735 Score: 216
Period size: 71 Copynumber: 2.5 Consensus size: 70
16614547 TCACGGATGA
* * * * * ** *
16614557 ACAACTATCGTTGGTCATCCGACTGGCGCTAGGG-GCAATAATTTTTCAACTTGTTTGACTAGTG
1 ACAACTATCATCGGTTATTCGACTAGCGCT-GGGCGCAATAATTTTTCAACTCATTTGACTAATG
16614621 CTAGGC
65 CTAGGC
* *
16614627 ACACACTATCATCGGTTATTCGACTAGCGCTGGGCGTAATAATTTTTCGACTCATTTGACTAATG
1 ACA-ACTATCATCGGTTATTCGACTAGCGCTGGGCGCAATAATTTTTCAACTCATTTGACTAATG
* *
16614692 TTGGGC
65 CTAGGC
*
16614698 ACAACTATCATCGGTTATTCGACTAGTGCTGGGCGCAA
1 ACAACTATCATCGGTTATTCGACTAGCGCTGGGCGCAA
16614736 AACCTTATTC
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
70 39 0.42
71 54 0.58
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (70 bp):
ACAACTATCATCGGTTATTCGACTAGCGCTGGGCGCAATAATTTTTCAACTCATTTGACTAATGC
TAGGC
Found at i:16619112 original size:35 final size:35
Alignment explanation
Indices: 16619068--16619435 Score: 434
Period size: 35 Copynumber: 10.5 Consensus size: 35
16619058 TCCTCATTGA
*
16619068 AATACCATACCTACATTTCACAACTCAGTATGGGA-
1 AATACCATACCTACATTTCACAACTCGGTAT-GGAT
* ** *
16619103 AATGCCATACCTACATTTCTTAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
*
16619138 AATACCATACCTACATTTCACGACTCGGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* * *
16619173 GATACCATACTTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* *
16619208 AATACCATACCTATATTTCTCAACTCGGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* *
16619243 GATACCATACCTACATTTCACAACTCGATATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* * * * *
16619278 GATACCATACCTACGTTTCACATCTTGGTATGGTT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* *
16619313 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* * * * * *
16619348 AATACCATACCTACGTATCATAGCTCAGTATGGAC
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* ***
16619383 GACGTCATACCTACATTTCACAACTCGGTATGG-T
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
*
16619417 TATACCATACCTACATTTC
1 AATACCATACCTACATTTC
16619436 GCACTTTGCC
Statistics
Matches: 283, Mismatches: 49, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
34 18 0.06
35 265 0.94
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCGGTATGGAT
Found at i:16623970 original size:35 final size:34
Alignment explanation
Indices: 16623924--16624286 Score: 351
Period size: 35 Copynumber: 10.6 Consensus size: 34
16623914 TTTCCTCATT
16623924 GAAATACCATACCTACATTTCACAACTCGGTATGG
1 GAAATACCATACCTACATTTCACAACTCGGTAT-G
* ** *
16623959 GAAATGCCATACCTACATTTCTTAACTCAGTATG
1 GAAATACCATACCTACATTTCACAACTCGGTATG
* * *
16623993 GATAATACCATACCTACATTTCACGACTCAGTGTG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
* * *
16624028 GATGATACCATACCTATATTTCACAACTCAGTATG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
* *
16624063 GATAATACCATACCTATATTTCTCAACTCGGTATG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
*
16624098 GATGATACCATACCTACATTTCACAACTC-GTATG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
* * * *
16624132 GATGATATCATACCTACGTTTCACATCTCGGTATG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
* *
16624167 GTTAATACCATACCTACGTTTCACAACTCGGTATG
1 G-AAATACCATACCTACATTTCACAACTCGGTATG
* * * **
16624202 G---TA--ATACCTACATATCATAGCTAAGTATG
1 GAAATACCATACCTACATTTCACAACTCGGTATG
* **
16624231 GACGACGCCATACCTACATTTCACAACTCGGTATG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
**
16624266 GTTATACCATACCTACATTTC
1 GAAATACCATACCTACATTTC
16624287 GCACTTTGCC
Statistics
Matches: 276, Mismatches: 43, Indels: 19
0.82 0.13 0.06
Matches are distributed among these distances:
29 21 0.08
31 2 0.01
34 50 0.18
35 203 0.74
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (34 bp):
GAAATACCATACCTACATTTCACAACTCGGTATG
Found at i:16624039 original size:70 final size:70
Alignment explanation
Indices: 16623926--16624286 Score: 398
Period size: 70 Copynumber: 5.3 Consensus size: 70
16623916 TCCTCATTGA
* * **
16623926 AATACCATACCTACATTTCACAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAACTCAGT
1 AATACCATACCTACATTTCACAACTCGGTAT-GGATGATACCATACCTACATTTCACAACTCAGT
16623990 ATGGAT
65 ATGGAT
* * * *
16623996 AATACCATACCTACATTTCACGACTCAGTGTGGATGATACCATACCTATATTTCACAACTCAGTA
1 AATACCATACCTACATTTCACAACTCGGTATGGATGATACCATACCTACATTTCACAACTCAGTA
16624061 TGGAT
66 TGGAT
* *
16624066 AATACCATACCTATATTTCTCAACTCGGTATGGATGATACCATACCTACATTTCACAACTC-GTA
1 AATACCATACCTACATTTCACAACTCGGTATGGATGATACCATACCTACATTTCACAACTCAGTA
16624130 TGGAT
66 TGGAT
* * * * * * * *
16624135 GATATCATACCTACGTTTCACATCTCGGTATGGTTAATACCATACCTACGTTTCACAACTCGGTA
1 AATACCATACCTACATTTCACAACTCGGTATGGATGATACCATACCTACATTTCACAACTCAGTA
16624200 TGG--
66 TGGAT
* * * ** * ** *
16624203 --TA--ATACCTACATATCATAGCTAAGTATGGACGACGCCATACCTACATTTCACAACTCGGTA
1 AATACCATACCTACATTTCACAACTCGGTATGGATGATACCATACCTACATTTCACAACTCAGTA
16624264 TGG-T
66 TGGAT
*
16624268 TATACCATACCTACATTTC
1 AATACCATACCTACATTTC
16624287 GCACTTTGCC
Statistics
Matches: 248, Mismatches: 36, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
64 50 0.20
66 2 0.01
67 2 0.01
69 75 0.30
70 119 0.48
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (70 bp):
AATACCATACCTACATTTCACAACTCGGTATGGATGATACCATACCTACATTTCACAACTCAGTA
TGGAT
Found at i:16624109 original size:105 final size:105
Alignment explanation
Indices: 16623927--16624286 Score: 441
Period size: 105 Copynumber: 3.5 Consensus size: 105
16623917 CCTCATTGAA
* * *
16623927 ATACCATACCTACATTTCACAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAACTCAGTA
1 ATACCATACCTACATTTCACAACTCGGTAT-GGATAATACCATACCTACATTTCTCAACTCGGTA
* * *
16623991 TGGATAATACCATACCTACATTTCACGACTCAGTGTGGATG
65 TGGATGATACCATACCTACATTTCACAACTCAGTATGGATG
* * *
16624032 ATACCATACCTATATTTCACAACTCAGTATGGATAATACCATACCTATATTTCTCAACTCGGTAT
1 ATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACATTTCTCAACTCGGTAT
16624097 GGATGATACCATACCTACATTTCACAACTC-GTATGGATG
66 GGATGATACCATACCTACATTTCACAACTCAGTATGGATG
* * * * * *
16624136 ATATCATACCTACGTTTCACATCTCGGTATGGTTAATACCATACCTACGTTTCACAACTCGGTAT
1 ATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACATTTCTCAACTCGGTAT
* * * * *
16624201 -G--G-TA--ATACCTACATATCATAGCTAAGTATGGACG
66 GGATGATACCATACCTACATTTCACAACTCAGTATGGATG
** *
16624235 ACGCCATACCTACATTTCACAACTCGGTATGG-TTATACCATACCTACATTTC
1 ATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACATTTC
16624287 GCACTTTGCC
Statistics
Matches: 223, Mismatches: 30, Indels: 11
0.84 0.11 0.04
Matches are distributed among these distances:
98 34 0.15
99 35 0.16
100 2 0.01
101 1 0.00
103 1 0.00
104 67 0.30
105 83 0.37
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (105 bp):
ATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACATTTCTCAACTCGGTAT
GGATGATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:16629933 original size:36 final size:36
Alignment explanation
Indices: 16629893--16629971 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 36
16629883 CTAATGTAAT
*
16629893 TGTTAATTT-AATTGAATGAAAGTTTATGGATGTATA
1 TGTT-ATTTCAATTGAATGAAAGTTTATGGAAGTATA
*
16629929 TGTTATTTCAATTGAATGGAAGTTTATGGAAGTATA
1 TGTTATTTCAATTGAATGAAAGTTTATGGAAGTATA
16629965 TG-TATTT
1 TGTTATTT
16629972 AGATAAAAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
35 9 0.22
36 31 0.77
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (36 bp):
TGTTATTTCAATTGAATGAAAGTTTATGGAAGTATA
Found at i:16630139 original size:70 final size:70
Alignment explanation
Indices: 16630025--16630238 Score: 245
Period size: 70 Copynumber: 3.1 Consensus size: 70
16630015 TCGCGGATGA
* * * *
16630025 ACAACTATCATCGGCTAT-CTGACTAGTG-TTGGACACAATAATTTGTTGACTCATTCGACTAGT
1 ACAACTATCATCGGTTATCCT-ACTAGCGCTAGG-CGCAATAATTTGTTGACTCATTCGACTAGT
16630088 TCTGGGC
64 TCTGGGC
* * * *
16630095 CCAACTATCATCGGTTATCCTACTAGCGCTAGGCGCAATAATTTGTTGACCCGTTCGACTAATGT
1 ACAACTATCATCGGTTATCCTACTAGCGCTAGGCGCAATAATTTGTTGACTCATTCGACTAGT-T
16630160 -TGGGC
65 CTGGGC
* * * * * *
16630165 ACAACTATAATCGGTTATCCGACTAACGCTGGGCGCAATAACTTGTTGACTCATTCGACTAGTGC
1 ACAACTATCATCGGTTATCCTACTAGCGCTAGGCGCAATAATTTGTTGACTCATTCGACTAGTTC
*
16630230 TGGGT
66 TGGGC
16630235 ACAA
1 ACAA
16630239 AAATGATCTT
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
70 115 0.95
71 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (70 bp):
ACAACTATCATCGGTTATCCTACTAGCGCTAGGCGCAATAATTTGTTGACTCATTCGACTAGTTC
TGGGC
Found at i:16632865 original size:44 final size:43
Alignment explanation
Indices: 16632813--16632915 Score: 129
Period size: 44 Copynumber: 2.3 Consensus size: 43
16632803 CTATAAGAAC
16632813 TCGCACACTTAGTGCAT-A-AATAATTAGCCGAAGCTATAACGATA
1 TCGCACACTTAGTGCATCACAATAA--A-CCGAAGCTATAACGATA
* **
16632857 TCGCACACTTAGTGCCATCACATTAAACCGAAGCTATCTCGATA
1 TCGCACACTTAGTG-CATCACAATAAACCGAAGCTATAACGATA
16632901 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
16632916 CACATAAAGC
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
43 1 0.02
44 43 0.81
45 4 0.08
46 1 0.02
47 4 0.08
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
TCGCACACTTAGTGCATCACAATAAACCGAAGCTATAACGATA
Found at i:16640704 original size:20 final size:20
Alignment explanation
Indices: 16640668--16640705 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
16640658 TAACAATTCA
16640668 ACTCATTTAATCACATAATT
1 ACTCATTTAATCACATAATT
*
16640688 ACTCAGTTTCATC-CATAA
1 ACTCA-TTTAATCACATAA
16640706 ACATATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.37
Consensus pattern (20 bp):
ACTCATTTAATCACATAATT
Found at i:16657227 original size:31 final size:31
Alignment explanation
Indices: 16657189--16657252 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
16657179 AAAAAACAAT
16657189 GCTCACAGAAATTTAGTTTGCAAATTCCTTG
1 GCTCACAGAAATTTAGTTTGCAAATTCCTTG
16657220 GCTCACAGAAATTTAGTTTGCAAATTCCTTG
1 GCTCACAGAAATTTAGTTTGCAAATTCCTTG
16657251 GC
1 GC
16657253 CATCAAGAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.34
Consensus pattern (31 bp):
GCTCACAGAAATTTAGTTTGCAAATTCCTTG
Found at i:16662282 original size:16 final size:16
Alignment explanation
Indices: 16662258--16662288 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16662248 TTAACAGATG
16662258 ACTACCAGACTAACCA
1 ACTACCAGACTAACCA
*
16662274 ACTATCAGACTAACC
1 ACTACCAGACTAACC
16662289 GATACTTAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.35, G:0.06, T:0.16
Consensus pattern (16 bp):
ACTACCAGACTAACCA
Found at i:16664442 original size:23 final size:23
Alignment explanation
Indices: 16664415--16664468 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
16664405 TATAAATAGT
16664415 AATAGTGTTAGAA-ATATACTATA
1 AATAGTGTTAGAAGATATAC-ATA
* *
16664438 TATAGTGTTTGAAGTATATACATA
1 AATAGTGTTAGAAG-ATATACATA
16664462 AATAGTG
1 AATAGTG
16664469 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 11 0.42
24 9 0.35
25 6 0.23
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.37
Consensus pattern (23 bp):
AATAGTGTTAGAAGATATACATA
Found at i:16664549 original size:22 final size:22
Alignment explanation
Indices: 16664524--16664598 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
16664514 TATGAAATAG
*
16664524 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
16664546 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
16664571 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
16664593 AGATAA
1 ATATAA
16664599 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:16664568 original size:25 final size:24
Alignment explanation
Indices: 16664530--16664592 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
16664520 ATAGATATAA
** *
16664530 AAAAAATATGTACATAATATAGTGT
1 AAAAAATACATACATAATATAAT-T
16664555 AAAAAATACATACATAATATAATT
1 AAAAAATACATACATAATATAATT
16664579 AAAATATATACATA
1 AAAA-A-ATACATA
16664593 AGATAACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (24 bp):
AAAAAATACATACATAATATAATT
Found at i:16664650 original size:25 final size:25
Alignment explanation
Indices: 16664614--16664745 Score: 100
Period size: 25 Copynumber: 5.6 Consensus size: 25
16664604 AGAAAAAAAT
*
16664614 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
16664639 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAGTATTAA-AG
* * *
16664664 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
16664688 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
16664710 A-ATATATATAATATAATATTAAA-
1 ATATATACATAATATAGTATTAAAG
*
16664733 AAATATA-ATAATA
1 ATATATACATAATA
16664746 ACAAAAAAAG
Statistics
Matches: 86, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
21 1 0.01
22 15 0.17
23 21 0.24
24 14 0.16
25 34 0.40
26 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:16664727 original size:50 final size:50
Alignment explanation
Indices: 16664607--16664728 Score: 131
Period size: 50 Copynumber: 2.4 Consensus size: 50
16664597 AACATGTAGA
*
16664607 AAAAAATATATATAAATAATATAGTATTAAAGATATATACATAAAATAGT
1 AAAAAATATATATAAATAATATAGAATTAAAGATATATACATAAAATAGT
* * ** * * * *
16664657 ATAATATATATATACGTAATATAGAATT-TAGA-ATATACCTAATATATT
1 AAAAAATATATATAAATAATATAGAATTAAAGATATATACATAAAATAGT
16664705 AAAAGAATATATATAATATAATAT
1 AAAA-AATATATATAA-ATAATAT
16664729 TAAAAAATAT
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
48 16 0.28
49 12 0.21
50 29 0.51
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (50 bp):
AAAAAATATATATAAATAATATAGAATTAAAGATATATACATAAAATAGT
Found at i:16665060 original size:16 final size:16
Alignment explanation
Indices: 16665022--16665060 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
16665012 ATCTCCAAAA
*
16665022 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
16665038 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
16665054 AATAACT
1 AAAAACT
16665061 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:16665282 original size:29 final size:30
Alignment explanation
Indices: 16665216--16665282 Score: 111
Period size: 29 Copynumber: 2.3 Consensus size: 30
16665206 TAGGTACAAG
16665216 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
16665246 AGGT-GTGGAGCAAGTGTGG-TAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
16665274 TGGTGGTGG
1 TGGTGGTGG
16665283 CAAAGGCTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 12 0.35
29 19 0.56
30 3 0.09
ACGTcount: A:0.16, C:0.04, G:0.52, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:16666067 original size:87 final size:89
Alignment explanation
Indices: 16665898--16666502 Score: 499
Period size: 87 Copynumber: 6.8 Consensus size: 89
16665888 TCTTTACTCG
* * ** * * *
16665898 GCATGTGATCCTGA-GCTTAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAC-TAAACAT
1 GCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAT-AA-AT
*
16665960 T-AAAAACAGAAATTGAAAATAGCTCA
63 TGAAAAACAGAAATTGAAAATACCTCA
* * *
16665986 GCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTT-AAAACA-AAATTTG
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAA-TTG
* ** *
16666048 TAAAACAGATTTTGAAAATACCTCG
65 AAAAACAGAAATTGAAAATACCTCA
* * * *
16666073 GTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTG
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACATAAATTG
* * *
16666137 AAAAAAAAAAAAATCAATTGAAAATACCTCG
65 ----AAAAACAGA--AATTGAAAATACCTCA
* * *
16666168 GCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA-AAACATAAATT
* *
16666233 GAAAAAAAGAAATTGAAAATATCTCA
64 GAAAAACAGAAATTGAAAATACCTCA
* * *
16666259 GC--GTG-TCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AATT
1 GCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-G-AAAACATAAAT
*
16666320 TGAAAAACAGAATTTGAAAATACCTCA
63 TGAAAAACAGAAATTGAAAATACCTCA
* * * * * *
16666347 -CGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACATAAATT
* * *
16666411 GAAGAACAGAAATGGAAAACACCTCA
64 GAAAAACAGAAATTGAAAATACCTCA
* * * *
16666437 GC--GT---CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAAT
1 GCATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACATAAAT
16666497 TGAAAA
63 TGAAAA
16666503 TACCTCAACG
Statistics
Matches: 433, Mismatches: 57, Indels: 55
0.79 0.10 0.10
Matches are distributed among these distances:
85 1 0.00
86 4 0.01
87 128 0.30
88 74 0.17
89 87 0.20
90 37 0.09
91 17 0.04
93 14 0.03
95 53 0.12
96 1 0.00
97 17 0.04
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (89 bp):
GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGA
AAAACAGAAATTGAAAATACCTCA
Found at i:16666293 original size:89 final size:87
Alignment explanation
Indices: 16666152--16666502 Score: 411
Period size: 89 Copynumber: 3.9 Consensus size: 87
16666142 AAAAAAAATC
* *
16666152 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
16666217 TTGACAAACATAAATTGAAAAAAAGA
64 TTGA-AAACA-AAATTGAAAAACAGA
* * *
16666243 AATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
*
16666308 GAAAAACAAATTTGAAAAACAGA
66 G-AAAACAAAATTGAAAAACAGA
* ** * * *
16666331 ATTTGAAAATACCTCA-CGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGT-CCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
16666395 TTGAAACACAGAAATTGAAGAACAGA
64 TTGAAA-ACA-AAATTGAAAAACAGA
* * * * *
16666421 AATGGAAAACACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
16666484 GAAAGACAGAAATTGAAAA
66 GAAA-ACA-AAATTGAAAA
16666503 TACCTCAACG
Statistics
Matches: 226, Mismatches: 28, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
87 59 0.26
88 32 0.14
89 87 0.38
90 27 0.12
91 21 0.09
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (87 bp):
AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GAAAACAAAATTGAAAAACAGA
Found at i:16666326 original size:14 final size:14
Alignment explanation
Indices: 16666308--16666339 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
16666298 TGATTTTTTG
16666308 GAAAAACA-AATTT
1 GAAAAACAGAATTT
16666321 GAAAAACAGAATTT
1 GAAAAACAGAATTT
16666335 GAAAA
1 GAAAA
16666340 TACCTCACGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (14 bp):
GAAAAACAGAATTT
Found at i:16666381 original size:178 final size:176
Alignment explanation
Indices: 16665906--16666502 Score: 563
Period size: 178 Copynumber: 3.4 Consensus size: 176
16665896 CGGCATGTGA
* ** * * *
16665906 TCCTGA-GCTTAACTCATTTCTCGCAATATGAATTGACTCTTT--AAAACTA-AACATT-AAAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC-AGAA-ATTGAAAAA
* * ** * *
16665966 CAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-
64 CAGAATTTGAAAATACCTCA-CGTGTGAGTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* ** * *
16666030 -TTTTT-AAAACAAAATTTGTAAAACAGATTTTGAAAATACCTCGGTATGTG
128 TTTTTTGAAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAG--CGTG
* * * * * *
16666080 ACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTGAAAAAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTG---AAAA
* * * *
16666144 AAAAAATCAATTGAAAATACCTCGGCGTGTGA-TCTGAGGCTCAACTCACCTCTCGCAATATGAG
63 ACAGAAT---TTGAAAATACCTC-ACGTGTGAGTC-AAGGCTCAACTCACCTCTCGCAATATGAG
* *
16666208 TTGATTTTTTTGACAAACATAAATTGAAAAAAAGAAATTGAAAATATCTCAGCGTG
123 TTGATTTTTTTGA-AAACA-AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG
* *
16666264 TCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AATTTGAAAAAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-GAAAAACAGAAATTGAAAAAC
* *
16666328 AGAATTTGAAAATACCTCACGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTT
65 AGAATTTGAAAATACCTCACGTGTGAGTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
16666393 TTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGC--G
130 TTTTGAAA-ACA-AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG
* * * *
16666440 TCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAA
16666503 TACCTCAACG
Statistics
Matches: 348, Mismatches: 51, Indels: 45
0.78 0.11 0.10
Matches are distributed among these distances:
174 8 0.02
175 29 0.08
176 47 0.14
177 17 0.05
178 77 0.22
179 23 0.07
181 1 0.00
182 57 0.16
184 41 0.12
185 11 0.03
186 34 0.10
187 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (176 bp):
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAACA
GAATTTGAAAATACCTCACGTGTGAGTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG
Done.