Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 68 of 333
Found at i:20549102 original size:12 final size:12
Alignment explanation
Indices: 20549085--20549110 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
20549075 AAAATTCATG
20549085 AAAATTAATTAA
1 AAAATTAATTAA
20549097 AAAATTAATTAA
1 AAAATTAATTAA
20549109 AA
1 AA
20549111 TTCAACATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAATTAA
Found at i:20556231 original size:28 final size:29
Alignment explanation
Indices: 20556194--20556289 Score: 122
Period size: 29 Copynumber: 3.3 Consensus size: 29
20556184 AAGTCTACAT
* * *
20556194 ACATGCATATGGCCCACTAGGCCC-ACTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
20556222 TCATTCATATAGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
20556251 ACATTCGTATGTCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
20556280 ACATTCATAT
1 ACATTCATAT
20556290 ACATGCTTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 20 0.35
29 37 0.65
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:20561922 original size:51 final size:51
Alignment explanation
Indices: 20561757--20561934 Score: 238
Period size: 52 Copynumber: 3.5 Consensus size: 51
20561747 ACTAGTGACT
*
20561757 CAAGTGTGGTACTATGTGAAGGCCACTTTGGGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
* *
20561806 CAAGTGTGGTACTATGTGAAGGCCAGTTTATGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* * * *
20561858 CAAGTGTAGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGATTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
20561909 CAAG-GATGGTACTATGTGCAA-GCCAC
1 CAAGTG-TGGTACTATGTG-AAGGCCAC
20561935 CGGGTATCCA
Statistics
Matches: 114, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
49 32 0.28
50 1 0.01
51 40 0.35
52 41 0.36
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:20564496 original size:40 final size:40
Alignment explanation
Indices: 20564426--20564600 Score: 282
Period size: 40 Copynumber: 4.4 Consensus size: 40
20564416 AAACCAAGTA
* * *
20564426 CCTTCAGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
20564465 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
20564505 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
20564545 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
20564585 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
20564601 TGGTTACCAT
Statistics
Matches: 128, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
39 13 0.10
40 115 0.90
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:20587820 original size:18 final size:19
Alignment explanation
Indices: 20587783--20587820 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
20587773 TTAATTTGGT
*
20587783 TTTACTTAATTTATCATTA
1 TTTACTTAATTTACCATTA
*
20587802 TTTAC-TAATTTACCTTTA
1 TTTACTTAATTTACCATTA
20587820 T
1 T
20587821 ACCTTTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTACTTAATTTACCATTA
Found at i:20596378 original size:23 final size:23
Alignment explanation
Indices: 20596351--20596396 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
20596341 TTGCTAAATT
20596351 CAACTTGAGCTCTAAACACTAAA
1 CAACTTGAGCTCTAAACACTAAA
20596374 CAACTTGAGCTCTAAACACTAAA
1 CAACTTGAGCTCTAAACACTAAA
20596397 TCTTCCAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.22
Consensus pattern (23 bp):
CAACTTGAGCTCTAAACACTAAA
Found at i:20605154 original size:50 final size:50
Alignment explanation
Indices: 20605074--20605289 Score: 265
Period size: 50 Copynumber: 4.3 Consensus size: 50
20605064 AAACTAAACC
* * * *
20605074 CTAAACTTATGAAAAG-CTTTGGTGGAGTATTATTTGGAAAGCCTTTATGG
1 CTAATCTTATGAAAAGCCTTT-GTGGCGTATTATCTGGAAAGCCTTTGTGG
* * * *
20605124 TTAATCTTATGAAAATCCTTTTTGGCGTATTATCTGGAAAACCTTTGTGG
1 CTAATCTTATGAAAAGCCTTTGTGGCGTATTATCTGGAAAGCCTTTGTGG
* * **
20605174 CTAATATTATGGAAAGCCTTTGTGGCGTATTATCTGGAAAGAATTTGTGG
1 CTAATCTTATGAAAAGCCTTTGTGGCGTATTATCTGGAAAGCCTTTGTGG
* * *
20605224 CTAATGC-TATGAAAAGCCTTTGTGGTGTATTATCTAGAATGCCTTTGTGG
1 CTAAT-CTTATGAAAAGCCTTTGTGGCGTATTATCTGGAAAGCCTTTGTGG
20605274 CTAATCTTATGAAAAG
1 CTAATCTTATGAAAAG
20605290 TGTAACAGCT
Statistics
Matches: 140, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
49 1 0.01
50 135 0.96
51 4 0.03
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (50 bp):
CTAATCTTATGAAAAGCCTTTGTGGCGTATTATCTGGAAAGCCTTTGTGG
Found at i:20605168 original size:25 final size:25
Alignment explanation
Indices: 20605134--20605274 Score: 103
Period size: 25 Copynumber: 5.6 Consensus size: 25
20605124 TTAATCTTAT
*
20605134 GAAAATCCTTTTTGGCGTATTATCTG
1 GAAAA-CCTTTGTGGCGTATTATCTG
* *
20605160 GAAAACCTTTGTGGC-TAATATTATG
1 GAAAACCTTTGTGGCGTATTA-TCTG
*
20605185 GAAAGCCTTTGTGGCGTATTATCTG
1 GAAAACCTTTGTGGCGTATTATCTG
* *
20605210 GAAAGA-ATTTGTGGC-TA--ATGCTAT
1 GAAA-ACCTTTGTGGCGTATTAT-CT-G
* *
20605234 GAAAAGCCTTTGTGGTGTATTATCTA
1 GAAAA-CCTTTGTGGCGTATTATCTG
**
20605260 GAATGCCTTTGTGGC
1 GAAAACCTTTGTGGC
20605275 TAATCTTATG
Statistics
Matches: 90, Mismatches: 15, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
22 2 0.02
23 3 0.03
24 10 0.11
25 57 0.63
26 14 0.16
27 2 0.02
28 2 0.02
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (25 bp):
GAAAACCTTTGTGGCGTATTATCTG
Found at i:20608332 original size:55 final size:53
Alignment explanation
Indices: 20608199--20608396 Score: 211
Period size: 55 Copynumber: 3.7 Consensus size: 53
20608189 AACTTACTAT
*
20608199 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAA
* * * * *
20608252 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAAGTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAA
*** *
20608307 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA
* * *
20608361 TTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
20608397 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 39 0.32
54 7 0.06
55 71 0.59
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAA
Found at i:20608411 original size:108 final size:107
Alignment explanation
Indices: 20608199--20608404 Score: 288
Period size: 108 Copynumber: 1.9 Consensus size: 107
20608189 AACTTACTAT
*
20608199 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
** *
20608264 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAAGTTATCAA
66 GCATGGTCTTACATGGGACCTTAACCCTATAGT-AGTTATCAA
* *
20608307 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTGCCATGCC
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGCC
*
20608371 TTGGCATGGTCTTACATGGTATCCTTAAACCCTA
63 TTGGCATGGTCTTACATGGGA-CCTT-AACCCTA
20608405 ATGTTATGAC
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
107 1 0.01
108 41 0.48
109 7 0.08
110 29 0.34
111 4 0.05
112 4 0.05
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (107 bp):
TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATGGGACCTTAACCCTATAGTAGTTATCAA
Found at i:20612192 original size:9 final size:9
Alignment explanation
Indices: 20612180--20612236 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
20612170 TTTGATAAAC
20612180 ATGATATGT
1 ATGATATGT
*
20612189 ATGATATGCAC
1 ATGATATG--T
*
20612200 ATGACATGT
1 ATGATATGT
*
20612209 ATGATATGCAC
1 ATGATATG--T
20612220 ATGATATGT
1 ATGATATGT
20612229 ATGATATG
1 ATGATATG
20612237 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:20612203 original size:20 final size:20
Alignment explanation
Indices: 20612178--20612240 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
20612168 ATTTTGATAA
20612178 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
20612198 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
20612218 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
20612238 ACA
1 ACA
20612241 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:20612373 original size:23 final size:24
Alignment explanation
Indices: 20612294--20612437 Score: 204
Period size: 24 Copynumber: 6.0 Consensus size: 24
20612284 GAGGAAGTGC
20612294 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
20612318 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
20612342 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
20612366 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
20612389 AAAAAAGGGCTT-CGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
20612414 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
20612438 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 4, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
23 28 0.25
24 53 0.48
25 20 0.18
26 9 0.08
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:20612666 original size:31 final size:31
Alignment explanation
Indices: 20612631--20612694 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
20612621 CGTTTACAGT
* *
20612631 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAAAATGA
**
20612662 AAAGGCTTCAGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCAGCCCAGTAATATGAAAAATGA
20612693 AA
1 AA
20612695 TACGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAAAATGA
Found at i:20616980 original size:40 final size:40
Alignment explanation
Indices: 20616828--20616973 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
20616818 TTGAATGATG
* * * *
20616828 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
20616868 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
20616908 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
20616949 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20616974 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 79 0.89
41 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:20621983 original size:47 final size:47
Alignment explanation
Indices: 20621923--20622283 Score: 659
Period size: 47 Copynumber: 7.6 Consensus size: 47
20621913 ATAGTATGTT
20621923 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
*
20621970 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
*
20622017 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
20622064 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
*
20622111 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
20622158 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
*
20622205 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
20622254 CTAATGGCCGATGTGATGAATGTGATAAGT
1 CTAATGGCCGATGTGATGAATGTGA-AAGT
20622284 CCCGAAGGGC
Statistics
Matches: 306, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 261 0.85
49 41 0.13
50 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.31
Consensus pattern (47 bp):
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
Found at i:20622033 original size:22 final size:23
Alignment explanation
Indices: 20622005--20622179 Score: 70
Period size: 22 Copynumber: 7.5 Consensus size: 23
20621995 AAGTGTATAT
20622005 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
*** ****
20622027 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGCCTAA-TG-GCCG
20622052 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
*** ****
20622074 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGCCTAA-TG-GCCG
*
20622099 ATGTGAT-AAGGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
*** ****
20622121 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGCCTAA-TG-GCCG
20622146 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
20622168 ATGTGATGAATG
1 ATGTGATGAATG
20622180 TGAAAGTGTA
Statistics
Matches: 99, Mismatches: 44, Indels: 19
0.61 0.27 0.12
Matches are distributed among these distances:
22 28 0.28
23 27 0.27
24 23 0.23
25 21 0.21
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (23 bp):
ATGTGATGAATGCCTAATGGCCG
Found at i:20622457 original size:37 final size:37
Alignment explanation
Indices: 20622401--20622479 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
20622391 CCGAGCTCTA
* * *
20622401 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
20622438 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
20622475 AAGAC
1 AAGAC
20622480 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:20627777 original size:25 final size:25
Alignment explanation
Indices: 20627748--20627795 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
20627738 TTATAATATG
* * *
20627748 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
20627773 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
20627796 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:20627857 original size:20 final size:20
Alignment explanation
Indices: 20627832--20627894 Score: 101
Period size: 20 Copynumber: 3.1 Consensus size: 20
20627822 ATTTTGATAA
20627832 ACATGATCTGTATGATATGC
1 ACATGATCTGTATGATATGC
20627852 ACATGA-CATGTATGATATGC
1 ACATGATC-TGTATGATATGC
*
20627872 ACATGATATGTATGATATGC
1 ACATGATCTGTATGATATGC
20627892 ACA
1 ACA
20627895 CGAGATGTTC
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 1 0.03
20 39 0.98
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATCTGTATGATATGC
Found at i:20628017 original size:47 final size:49
Alignment explanation
Indices: 20627948--20628090 Score: 215
Period size: 47 Copynumber: 3.0 Consensus size: 49
20627938 GAGGAAGTGC
20627948 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATG-CCCAGTTATT-
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
20627995 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT-A
*
20628044 AAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
20628091 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
46 12 0.13
47 34 0.38
48 13 0.15
49 19 0.21
50 11 0.12
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
Found at i:20628086 original size:25 final size:24
Alignment explanation
Indices: 20627948--20628090 Score: 213
Period size: 23 Copynumber: 6.0 Consensus size: 24
20627938 GAGGAAGTGC
20627948 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
20627972 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
20627995 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
20628019 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
20628042 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
20628067 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
20628091 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 1, Indels: 13
0.89 0.01 0.10
Matches are distributed among these distances:
23 52 0.47
24 29 0.26
25 21 0.19
26 9 0.08
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:20628326 original size:31 final size:31
Alignment explanation
Indices: 20628288--20628347 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
20628278 TACAGTAAAG
*
20628288 GCTTCGGCCCAGTAATATGAAATATGAAAAA
1 GCTTCGGCCCAGTAATATGAAAAATGAAAAA
**
20628319 GCTTCGGCCCAGTGTTATGAAAAATGAAA
1 GCTTCGGCCCAGTAATATGAAAAATGAAA
20628348 TATGAAAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATGAAAAATGAAAAA
Found at i:20631013 original size:27 final size:27
Alignment explanation
Indices: 20630983--20631159 Score: 176
Period size: 27 Copynumber: 6.5 Consensus size: 27
20630973 TATTGAGTCT
* *
20630983 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAATCAACTC
* *
20631010 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAATCAACTC
*
20631037 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAATC-AACTC
** * ** *
20631065 GCACACTTAGTGCCGCTTGGTCAATTC
1 GCACACTTAGTGCTACATAATCAACTC
* **
20631092 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAATCAACTC
* * *
20631119 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAATCAACTC
20631146 GCACACTTAGTGCT
1 GCACACTTAGTGCT
20631160 GTACAATTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAATCAACTC
Found at i:20631121 original size:82 final size:81
Alignment explanation
Indices: 20631003--20631158 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
20630993 TGCTATATAA
* *
20631003 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
20631068 CACTTAGTGCCGCTTGG
65 CACTTAGTGCCGCTTGG
* * **
20631085 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
20631149 CACTTAGTGC
65 CACTTAGTGC
20631159 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCTTGG
Found at i:20646655 original size:15 final size:15
Alignment explanation
Indices: 20646626--20646667 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
20646616 TTAACCCAAT
*
20646626 CAAATACAA-AAAAA
1 CAAATAAAACAAAAA
*
20646640 CAAATAAAGCAAAAA
1 CAAATAAAACAAAAA
*
20646655 CGAATAAAACAAA
1 CAAATAAAACAAA
20646668 GAAACTAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.74, C:0.14, G:0.05, T:0.07
Consensus pattern (15 bp):
CAAATAAAACAAAAA
Found at i:20660636 original size:43 final size:43
Alignment explanation
Indices: 20660566--20660732 Score: 194
Period size: 43 Copynumber: 3.9 Consensus size: 43
20660556 AGCTCGTACA
* *
20660566 ATGCCAA-ATCCCAGATATGGTCTTTACATGTTATCAC-ATATCG
1 ATGCCAATATCCCAGACATGGTC-TTACATGTAATCACAATA-CG
* * * *
20660609 ATGCCACTATCCCAGACAAGGTCTTACATGAAATCATAATACG
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACAATACG
* * * *
20660652 TTGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACA
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACAATACG
* *
20660695 ATGCCAATGTCCCAGACATGGTCTTACATTTAATCACA
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACA
20660733 TCTCAATAAC
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
43 89 0.85
44 16 0.15
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACATGTAATCACAATACG
Found at i:20670339 original size:15 final size:15
Alignment explanation
Indices: 20670319--20670347 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
20670309 CTTGTCGAAA
20670319 TTAAATTAAACTAAG
1 TTAAATTAAACTAAG
20670334 TTAAATTAAACTAA
1 TTAAATTAAACTAA
20670348 TGTAATTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.34
Consensus pattern (15 bp):
TTAAATTAAACTAAG
Found at i:20677617 original size:35 final size:36
Alignment explanation
Indices: 20677569--20677655 Score: 108
Period size: 35 Copynumber: 2.5 Consensus size: 36
20677559 TTTTTTCATA
20677569 TTTG-TTTTCTTTTTATTCCCTTTC-CTATCTTTTCT
1 TTTGCTTTTCTTTTTATTCCCTTTCACT-TCTTTTCT
* ** *
20677604 TTT-CTTTTGTTTTTCCTCCCTTTCACTTTTTTTCT
1 TTTGCTTTTCTTTTTATTCCCTTTCACTTCTTTTCT
20677639 TTTGCTTTTCTTTTTAT
1 TTTGCTTTTCTTTTTAT
20677656 CTTTCTTCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
35 30 0.71
36 12 0.29
ACGTcount: A:0.05, C:0.22, G:0.03, T:0.70
Consensus pattern (36 bp):
TTTGCTTTTCTTTTTATTCCCTTTCACTTCTTTTCT
Found at i:20681481 original size:25 final size:25
Alignment explanation
Indices: 20681389--20681505 Score: 94
Period size: 25 Copynumber: 4.7 Consensus size: 25
20681379 TCTAACCCAT
* *
20681389 AGCTCGT-TAGAGCATATCGATCTAC
1 AGCTCGTGT-GAGCATACCAATCTAC
* * ** *
20681414 AGTTGGTGTGAGCATACTGATTTAC
1 AGCTCGTGTGAGCATACCAATCTAC
*
20681439 AGCTCGTGAGAGCATACCAATCTAC
1 AGCTCGTGTGAGCATACCAATCTAC
* *
20681464 AGCTCGAGTGAGCATACCAGT-TCAC
1 AGCTCGTGTGAGCATACCAATCT-AC
* *
20681489 AACTCGTATGAGCATAC
1 AGCTCGTGTGAGCATAC
20681506 ATGTACAGGA
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
24 1 0.01
25 71 0.97
26 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (25 bp):
AGCTCGTGTGAGCATACCAATCTAC
Found at i:20681495 original size:50 final size:49
Alignment explanation
Indices: 20681391--20681505 Score: 115
Period size: 50 Copynumber: 2.3 Consensus size: 49
20681381 TAACCCATAG
* * * * * * * *
20681391 CTCGTTAGAGCATATCGATCTACAGTTGGTGTGAGCATACTGATTTACAG
1 CTCG-TAGAGCATACCAATCTACAGCTCGAGTGAGCATACAGATTCACAA
20681441 CTCGTGAGAGCATACCAATCTACAGCTCGAGTGAGCATACCAG-TTCACAA
1 CTCGT-AGAGCATACCAATCTACAGCTCGAGTGAGCATA-CAGATTCACAA
20681491 CTCGTATGAGCATAC
1 CTCGTA-GAGCATAC
20681506 ATGTACAGGA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
49 2 0.04
50 50 0.93
51 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (49 bp):
CTCGTAGAGCATACCAATCTACAGCTCGAGTGAGCATACAGATTCACAA
Found at i:20694611 original size:39 final size:40
Alignment explanation
Indices: 20694531--20694750 Score: 217
Period size: 39 Copynumber: 5.7 Consensus size: 40
20694521 GCTCCTCGTT
* * *
20694531 CAAATGCCTTCGGGACAT-AGCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
20694570 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
20694609 CAAATGCCTTCGGGACTTAACCCGGA-TTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
20694648 CAAATGCCTTCGAG-CTT-AGCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
20694686 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
20694727 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
20694751 CACATTCAAA
Statistics
Matches: 155, Mismatches: 16, Indels: 20
0.81 0.08 0.10
Matches are distributed among these distances:
37 7 0.05
38 40 0.26
39 62 0.40
40 39 0.25
41 7 0.05
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:20694640 original size:78 final size:79
Alignment explanation
Indices: 20694531--20694750 Score: 236
Period size: 77 Copynumber: 2.8 Consensus size: 79
20694521 GCTCCTCGTT
* * *
20694531 CAAATGCCTTCGGGACAT-AGCCGGTTATAGTAATTCGCACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAATTCGCACAATGCCTTCGGGACTTAACCCGGA
*
20694595 TTTAGTAACTCGCA
66 ATTAGTAACTCGCA
* * * *
20694609 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGTACAAATGCCTTCGAG-CTT-AGCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAATTCGCAC-AATGCCTTCGGGACTTAACCCGG
*
20694671 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * * * *
20694686 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCACAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGT-AATTCGCACAATGCCTTCGGGACTTAACCCG
20694749 GA
64 GA
20694751 CACATTCAAA
Statistics
Matches: 116, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
76 3 0.03
77 47 0.41
78 39 0.34
79 27 0.23
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAATTCGCACAATGCCTTCGGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:20700757 original size:27 final size:26
Alignment explanation
Indices: 20700726--20700930 Score: 180
Period size: 27 Copynumber: 7.6 Consensus size: 26
20700716 TAAATTGTAC
20700726 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
20700753 TGCACTAAGTGTGCGAAATGGA-TATG-
1 AGCACTAAGTGTGCG--ATTGACTATGT
* *
20700779 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
20700807 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGC--GATTGACTATGT
* * *
20700835 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
20700862 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
20700889 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
20700916 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
20700931 GGCTCAATAA
Statistics
Matches: 153, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.05
27 119 0.78
28 24 0.16
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:20700787 original size:54 final size:54
Alignment explanation
Indices: 20700727--20700930 Score: 207
Period size: 54 Copynumber: 3.7 Consensus size: 54
20700717 AAATTGTACA
*
20700727 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATGAT-
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAAATGGACTATG-TG
* ** *
20700781 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
* * * * * * *
20700836 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCG-ATTTGATTACGTA
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
* * *
20700890 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCG
20700931 GGCTCAATAA
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
54 86 0.68
55 41 0.32
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
Found at i:20700867 original size:82 final size:82
Alignment explanation
Indices: 20700725--20700905 Score: 215
Period size: 82 Copynumber: 2.2 Consensus size: 82
20700715 TTAAATTGTA
* * *
20700725 CAGCACTAAGTGTGCGA-TTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAG
1 CAGCACTAAGTGTGCGAGATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAAG
*
20700789 TGTGCGAATTGACCATG
66 TGTGCGAATTGACCACG
* * * *
20700806 CGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTA
1 CAGCACTAAGTGTGCGAGATCGACTATGTGGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTA
* **
20700869 AGTGTGCGATTTGATTACG
64 AGTGTGCGAATTGACCACG
*
20700888 TAGCACTAAGTGTGCGAG
1 CAGCACTAAGTGTGCGAG
20700906 TTGATTATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 21 0.25
82 63 0.75
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (82 bp):
CAGCACTAAGTGTGCGAGATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAAG
TGTGCGAATTGACCACG
Found at i:20700921 original size:109 final size:109
Alignment explanation
Indices: 20700727--20700930 Score: 250
Period size: 109 Copynumber: 1.9 Consensus size: 109
20700717 AAATTGTACA
* * *
20700727 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTACGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
* *
20700792 GCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
66 GCGAATTGACCATACAGCACTAAGTGTGCGAGATGGACTATGTG
* * * *
20700836 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGATTCGACTACGTAGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTAAGT
* ** * *
20700899 GTGCGAGTTGATTATATAGCACTGAGTGTGCG
64 GTGCGAATTGACCATACAGCACTAAGTGTGCG
20700931 GGCTCAATAA
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
108 5 0.06
109 74 0.94
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (109 bp):
GCACTAAGTGTGCGATTCGACTACGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
GCGAATTGACCATACAGCACTAAGTGTGCGAGATGGACTATGTG
Found at i:20705977 original size:39 final size:40
Alignment explanation
Indices: 20705815--20706038 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
20705805 GCTCCTCGTT
* *
20705815 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
20705855 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
20705895 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
20705935 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
20705974 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
20706015 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
20706039 CAGCATTCAA
Statistics
Matches: 164, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.29
40 105 0.64
41 9 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:20705999 original size:79 final size:80
Alignment explanation
Indices: 20705815--20706038 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 80
20705805 GCTCCTCGTT
* * * *
20705815 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCG
*
20705879 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
*
20705895 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGG
*
20705959 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* *
20705974 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACT--TAGCACAA-GCCTTCGGGACTTAGC
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAACTCGTA-CA-AATGCCTTCGGGACTTAGC
20706034 CCGGA
62 CCGGA
20706039 CAGCATTCAA
Statistics
Matches: 128, Mismatches: 10, Indels: 13
0.85 0.07 0.09
Matches are distributed among these distances:
77 2 0.02
78 14 0.11
79 61 0.48
80 49 0.38
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:20712403 original size:20 final size:20
Alignment explanation
Indices: 20712378--20712422 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
20712368 CATTAATTAT
*
20712378 ATTTTATTAAATGGAAA-TAA
1 ATTTTAATAAAT-GAAACTAA
*
20712398 ATTTTAATACATGAAACTAA
1 ATTTTAATAAATGAAACTAA
20712418 ATTTT
1 ATTTT
20712423 TAAATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (20 bp):
ATTTTAATAAATGAAACTAA
Found at i:20714011 original size:14 final size:14
Alignment explanation
Indices: 20713993--20714023 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
20713983 GTATTTTAGA
20713993 ATTTTTTA-TTTTT
1 ATTTTTTACTTTTT
20714006 ATTTTTTACTTTTT
1 ATTTTTTACTTTTT
20714020 ATTT
1 ATTT
20714024 AATAAACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (14 bp):
ATTTTTTACTTTTT
Found at i:20715657 original size:50 final size:50
Alignment explanation
Indices: 20715549--20715732 Score: 235
Period size: 50 Copynumber: 3.7 Consensus size: 50
20715539 CTGGTACGCA
* * *
20715549 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCAGGTACACG
* ** * *
20715598 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCAGGTACACG
* * * * *
20715648 TAGTTGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TTATCAGGTACACG
20715699 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
20715733 TACAATAGAT
Statistics
Matches: 113, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
49 30 0.27
50 44 0.39
51 39 0.35
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCAGGTACACG
Found at i:20715715 original size:101 final size:99
Alignment explanation
Indices: 20715549--20715732 Score: 278
Period size: 101 Copynumber: 1.8 Consensus size: 99
20715539 CTGGTACGCA
* * * * *
20715549 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGTACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCAGGTACACATAGTAGCCTGCACTTA
20715614 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* * *
20715648 TAGTTGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CAAA-TTATCAGGTACACATAGTAGCCTGCACT
20715713 TAGTACTACACACGTGACCT
64 TAGTACTACACACGTGACCT
20715733 TACAATAGAT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
99 28 0.37
100 3 0.04
101 44 0.59
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:20717503 original size:18 final size:20
Alignment explanation
Indices: 20717466--20717507 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
20717456 TCATTGTTTC
20717466 AAAATCAATTGATTTACAGA
1 AAAATCAATTGATTTACAGA
*
20717486 AAAATCAA-T-ATTTTCAGA
1 AAAATCAATTGATTTACAGA
20717504 AAAA
1 AAAA
20717508 ATGTTTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 12 0.57
19 1 0.05
20 8 0.38
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.29
Consensus pattern (20 bp):
AAAATCAATTGATTTACAGA
Found at i:20718078 original size:20 final size:20
Alignment explanation
Indices: 20718045--20718087 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
20718035 TACCTGCAAG
20718045 AAAACAAAAGGGAC-AACAAC
1 AAAACAAAAGGGACGAA-AAC
20718065 AAAA-AAAAGAGGACGAAAAC
1 AAAACAAAAG-GGACGAAAAC
20718085 AAA
1 AAA
20718088 TTGTATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 5 0.24
20 14 0.67
21 2 0.10
ACGTcount: A:0.70, C:0.14, G:0.16, T:0.00
Consensus pattern (20 bp):
AAAACAAAAGGGACGAAAAC
Found at i:20719275 original size:23 final size:22
Alignment explanation
Indices: 20719212--20719291 Score: 88
Period size: 23 Copynumber: 3.5 Consensus size: 22
20719202 CTCTATACTT
*
20719212 TATTATTTTTTATACATGTTATTTA
1 TATTATTTTTTA-A-AT-TTATGTA
*
20719237 TATTAATTTTTAAATTTATGTA
1 TATTATTTTTTAAATTTATGTA
* *
20719259 TATTATTTGTTTAAATTAATGCA
1 TATTATTT-TTTAAATTTATGTA
20719282 TATTATTTTT
1 TATTATTTTT
20719292 GCATATTACT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.31
23 22 0.45
24 1 0.02
25 11 0.22
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (22 bp):
TATTATTTTTTAAATTTATGTA
Found at i:20721443 original size:19 final size:19
Alignment explanation
Indices: 20721421--20721460 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
20721411 ATTTTATGTA
20721421 AAGGAATTTATTTTCTAGG
1 AAGGAATTTATTTTCTAGG
*
20721440 AAGGAATTTGTTTTCTAGG
1 AAGGAATTTATTTTCTAGG
20721459 AA
1 AA
20721461 AGTTGTTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.40
Consensus pattern (19 bp):
AAGGAATTTATTTTCTAGG
Found at i:20724285 original size:12 final size:11
Alignment explanation
Indices: 20724233--20724288 Score: 51
Period size: 12 Copynumber: 5.0 Consensus size: 11
20724223 AAAGGCAACC
20724233 AAAAAGAAAAA
1 AAAAAGAAAAA
* *
20724244 TAAAAGTACAAA
1 AAAAAG-AAAAA
* *
20724256 AAACA-AAGAA
1 AAAAAGAAAAA
20724266 AAAAAGAAAAA
1 AAAAAGAAAAA
20724277 AAAAGAGAAAAA
1 AAAA-AGAAAAA
20724289 CAGTAAAACA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
10 7 0.21
11 13 0.38
12 14 0.41
ACGTcount: A:0.82, C:0.04, G:0.11, T:0.04
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:20724296 original size:20 final size:20
Alignment explanation
Indices: 20724233--20724301 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
20724223 AAAGGCAACC
*
20724233 AAAAAGAAAAATAAAAGTACAA
1 AAAAAGAGAAA-AAAAGTA-AA
* *
20724255 AAAACAAAGAAAAAAAGAAAA
1 AAAA-AGAGAAAAAAAGTAAA
*
20724276 AAAAAGAGAAAAACAGTAAA
1 AAAAAGAGAAAAAAAGTAAA
*
20724296 ACAAAG
1 AAAAAG
20724302 GTCATAGTGA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
20 18 0.46
21 6 0.15
22 10 0.26
23 5 0.13
ACGTcount: A:0.78, C:0.06, G:0.12, T:0.04
Consensus pattern (20 bp):
AAAAAGAGAAAAAAAGTAAA
Found at i:20726472 original size:226 final size:226
Alignment explanation
Indices: 20726159--20726635 Score: 819
Period size: 226 Copynumber: 2.1 Consensus size: 226
20726149 GATAGCGAAT
20726159 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTTTGA
1 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTTTGA
* *
20726224 AATTGCAGTAGAGCAGATCATAGTAAGCCCTATCTCTCTAAAGTTGCAGTGGAACAGGTTAAAAT
66 AATTGCAGTAGAGCAGATCATAGCAAGCCCTATCTCCCTAAAGTTGCAGTGGAACAGGTTAAAAT
*
20726289 GACAGGTCTTATTTCCCTGAAGTTGTAGTGGAGCAGACCAAAAACGGCAAATCTTATCTCCATGT
131 GACAGGTCTTATTTCCCTGAAGTTGCAGTGGAGCAGACCAAAAACGGCAAATCTTATCTCCATGT
20726354 ATCGGCAATGGAGCAGATTTAAGCCATAAGC
196 ATCGGCAATGGAGCAGATTTAAGCCATAAGC
*
20726385 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAATAGATCTTATCTCTTTGA
1 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTTTGA
* * * * * *
20726450 AGTTGCAGTAGAGCATATCATAGCAAGCCCTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT
66 AATTGCAGTAGAGCAGATCATAGCAAGCCCTATCTCCCTAAAGTTGCAGTGGAACAGGTTAAAAT
* * *
20726515 GACAGGTCTTATTTCCCTGAGGTTGCAGTGGAGTAGACCAAAGACGGCAAATCTTATCTCCATGT
131 GACAGGTCTTATTTCCCTGAAGTTGCAGTGGAGCAGACCAAAAACGGCAAATCTTATCTCCATGT
20726580 ATCGGCAATGGAGCAGATTTAAGCCATAAGC
196 ATCGGCAATGGAGCAGATTTAAGCCATAAGC
* *
20726611 CTTATCTCCCTAAAGTTGCAGTGGA
1 CTTATTTCCCTGAAGTTGCAGTGGA
20726636 GCAGGCTCAA
Statistics
Matches: 236, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
226 236 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (226 bp):
CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTTTGA
AATTGCAGTAGAGCAGATCATAGCAAGCCCTATCTCCCTAAAGTTGCAGTGGAACAGGTTAAAAT
GACAGGTCTTATTTCCCTGAAGTTGCAGTGGAGCAGACCAAAAACGGCAAATCTTATCTCCATGT
ATCGGCAATGGAGCAGATTTAAGCCATAAGC
Found at i:20726871 original size:44 final size:45
Alignment explanation
Indices: 20726788--20726881 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 45
20726778 AGCCACTAGC
*** *
20726788 CTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGACGATTGTAG-T
1 CTTATCTCTCTAAGGTAGCAAGAGAGCAGACCGAAGATTGTAGAT
*
20726832 CTTATCTTTCTAAGGTAGCAAG-GAAGCAGACCGAAGATTGTAGAT
1 CTTATCTCTCTAAGGTAGCAAGAG-AGCAGACCGAAGATTGTAGAT
20726877 CTTAT
1 CTTAT
20726882 TTCCCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 36 0.84
45 6 0.14
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (45 bp):
CTTATCTCTCTAAGGTAGCAAGAGAGCAGACCGAAGATTGTAGAT
Found at i:20727522 original size:17 final size:16
Alignment explanation
Indices: 20727502--20727542 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
20727492 TTTTCAAAGG
20727502 CCCAAATTAACCCTAAA
1 CCCAAATTAACCCT-AA
**
20727519 CCCAAACAAACCCTAA
1 CCCAAATTAACCCTAA
20727535 CCCAAATT
1 CCCAAATT
20727543 GACCAAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.46, C:0.39, G:0.00, T:0.15
Consensus pattern (16 bp):
CCCAAATTAACCCTAA
Found at i:20729416 original size:10 final size:10
Alignment explanation
Indices: 20729398--20729464 Score: 55
Period size: 10 Copynumber: 6.6 Consensus size: 10
20729388 TTTACATACA
20729398 TATTATATAT
1 TATTATATAT
*
20729408 TATTCTATAT
1 TATTATATAT
*
20729418 TATTATGTCAT
1 TATTATAT-AT
* *
20729429 T-TTGTATAC
1 TATTATATAT
20729438 TATTATATAT
1 TATTATATAT
* *
20729448 TTTTATCTAT
1 TATTATATAT
20729458 ATATTAT
1 -TATTAT
20729465 CATTATTAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
9 2 0.05
10 33 0.77
11 8 0.19
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (10 bp):
TATTATATAT
Found at i:20729423 original size:20 final size:19
Alignment explanation
Indices: 20729393--20729461 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
20729383 TTATTTTTAC
20729393 ATACATATTATATATTATTCT
1 ATAC-TATTATATATT-TTCT
* * *
20729414 ATATTATTATGTCATTTTGT
1 ATACTATTATAT-ATTTTCT
20729434 ATACTATTATATATTTT-T
1 ATACTATTATATATTTTCT
20729452 AT-CTA-TATAT
1 ATACTATTATAT
20729462 TATCATTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
16 5 0.12
17 3 0.07
18 3 0.07
19 5 0.12
20 20 0.48
21 6 0.14
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (19 bp):
ATACTATTATATATTTTCT
Found at i:20731901 original size:22 final size:25
Alignment explanation
Indices: 20731858--20731908 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 25
20731848 TTTTATACTT
* *
20731858 TATTATTTTTTATACATGTTATTTA
1 TATTAATTTTTATACATGTTATGTA
20731883 TATTAATTTTT-TA-AT-TTATGTA
1 TATTAATTTTTATACATGTTATGTA
20731905 TATT
1 TATT
20731909 CTTTGTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.42
23 2 0.08
24 2 0.08
25 10 0.42
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (25 bp):
TATTAATTTTTATACATGTTATGTA
Found at i:20745236 original size:69 final size:69
Alignment explanation
Indices: 20745123--20745696 Score: 318
Period size: 69 Copynumber: 8.3 Consensus size: 69
20745113 AGATAATCAG
* * * * *** *
20745123 TTGAGAGCTTTGCTCTTGTTAACTATATTGGAGTCTATGGCTCTTCACCTGCTAGCCTTAGTATG
1 TTGAGAGCTTTGCTCTTGCTAACTGTGTTGGAGGCTGCAGCTCTTCACCTGCGAGCCTTAGTATG
20745188 ATAC
66 ATAC
* * ** * * *
20745192 TTGAGAGCTTTGCTCTTGCTAACTGTGTTGGAGGTTGCAACTCTTTGCTTACAAGCCTTAGTATG
1 TTGAGAGCTTTGCTCTTGCTAACTGTGTTGGAGGCTGCAGCTCTTCACCTGCGAGCCTTAGTATG
* *
20745257 GTAG
66 ATAC
* * *** * * *
20745261 ATGAGAGTTTTGCTCTCATTAACAGTGTTGAAGGCTGCAGCTCTTCACCTGTGAGCCTTAGTATG
1 TTGAGAGCTTTGCTCTTGCTAACTGTGTTGGAGGCTGCAGCTCTTCACCTGCGAGCCTTAGTATG
*
20745326 ATAG
66 ATAC
* * * * * *
20745330 TTG-GAGCTTTGTTCTTACTAACTGTGTTAGAGGCTGTACCTCTTCACCTGCGAGCCTTAATATG
1 TTGAGAGCTTTGCTCTTGCTAACTGTGTTGGAGGCTGCAGCTCTTCACCTGCGAGCCTTAGTATG
*
20745394 ACAGC
66 ATA-C
* * * * ** *
20745399 -TGGGAACTTTAG-TCTTGCTAACTGTGTTGGAGGCTGCGGCTTTTTGCCTACGAGCCTTAGTAT
1 TTGAGAGCTTT-GCTCTTGCTAACTGTGTTGGAGGCTGCAGCTCTTCACCTGCGAGCCTTAGTAT
*
20745462 GACAAC
65 GA-TAC
* * * * * * ** * * *
20745468 TAG-GAACTTTACTCTTGCTAATTGTGTTGGAGACTGCAGCTATTTGCATACGAGCCTTACTATG
1 TTGAGAGCTTTGCTCTTGCTAACTGTGTTGGAGGCTGCAGCTCTTCACCTGCGAGCCTTAGTATG
*
20745532 ACAAC
66 A-TAC
* *** * * * ** * * * *
20745537 -GGA-AGCAACGCTCTCGCTAACTGTATTAGAGGCTGTGGCTCTTCGCCTGTGAGCTTTACTATG
1 TTGAGAGCTTTGCTCTTGCTAACTGTGTTGGAGGCTGCAGCTCTTCACCTGCGAGCCTTAGTATG
*
20745600 AAAGC
66 ATA-C
* * * * * * * **
20745605 -TGGGAGCTTTGCTCTCGCTAACTATGCTAGG-GGCTACGGATCTTTGCCTGCGAGCCTTAGTAT
1 TTGAGAGCTTTGCTCTTGCTAACTGTG-TTGGAGGCTGCAGCTCTTCACCTGCGAGCCTTAGTAT
* *
20745668 GACAG
65 GATAC
* *
20745673 TTGGGAGCTTTGCTCTCGCTAACT
1 TTGAGAGCTTTGCTCTTGCTAACT
20745697 ATGTAACACT
Statistics
Matches: 391, Mismatches: 103, Indels: 22
0.76 0.20 0.04
Matches are distributed among these distances:
67 2 0.01
68 100 0.26
69 284 0.73
70 5 0.01
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (69 bp):
TTGAGAGCTTTGCTCTTGCTAACTGTGTTGGAGGCTGCAGCTCTTCACCTGCGAGCCTTAGTATG
ATAC
Found at i:20747577 original size:39 final size:39
Alignment explanation
Indices: 20747523--20747643 Score: 224
Period size: 39 Copynumber: 3.1 Consensus size: 39
20747513 ATTACCAGCA
* *
20747523 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
20747562 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
20747601 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
20747640 CCAG
1 CCAG
20747644 TGTCTTGCAT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:20749380 original size:69 final size:69
Alignment explanation
Indices: 20749298--20749665 Score: 336
Period size: 69 Copynumber: 5.3 Consensus size: 69
20749288 GTTTCACCTA
* *
20749298 GAGCTTTGCTCTCACTAATTGTGCTAGGGGTTACGACTCTTCGCCTGTGAGCCTTAGTATGGCAG
1 GAGCTTTGCTCTCACTAATTGTGCTAGGGGTTACGACTCTTCGCCTGCGAGCCTTAGTATGACAG
20749363 TTGG
66 TTGG
*
20749367 GAGCTTTGCTCTCACTAATTGTCCTAGGGGTTACGACTCTTCGCCTGCGAGCCTTAGTATGGA-A
1 GAGCTTTGCTCTCACTAATTGTGCTAGGGGTTACGACTCTTCGCCTGCGAGCCTTAGTAT-GACA
20749431 GTTGG
65 GTTGG
* * * *
20749436 GAGCTTTGCTCTCATTAATTGT-ATAGGAGGTTTC-AGCTCTTCACCTGCGAGCCTTAGTATGAC
1 GAGCTTTGCTCTCACTAATTGTGCTAGG-GGTTACGA-CTCTTCGCCTGCGAGCCTTAGTATGAC
20749499 A-TCTGG
64 AGT-TGG
* * * * * * ** * * * * *
20749505 GAGCTCTGCTCTCTCTAACTCT-ATTGGAGGTTGTGACTCTTCGCTTGCAAGTCTTAATTTGACA
1 GAGCTTTGCTCTCACTAATTGTGCTAGG-GGTTACGACTCTTCGCCTGCGAGCCTTAGTATGACA
** *
20749569 ACTAG
65 GTTGG
* * * * * * *
20749574 GAGCTTTGCTCTCACTAACTATGCTAGGGGCTGTA-G-CTATTCTCATGTGAGCCTTACTATGAC
1 GAGCTTTGCTCTCACTAATTGTGCTAGGGG-T-TACGACTCTTCGCCTGCGAGCCTTAGTATGAC
20749637 AGTTGG
64 AGTTGG
* *
20749643 GAGCTTTTCTCTCGCTAATTGTG
1 GAGCTTTGCTCTCACTAATTGTG
20749666 ATGTGGGCTG
Statistics
Matches: 245, Mismatches: 44, Indels: 20
0.79 0.14 0.06
Matches are distributed among these distances:
68 8 0.03
69 229 0.93
70 7 0.03
71 1 0.00
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.35
Consensus pattern (69 bp):
GAGCTTTGCTCTCACTAATTGTGCTAGGGGTTACGACTCTTCGCCTGCGAGCCTTAGTATGACAG
TTGG
Found at i:20749655 original size:138 final size:137
Alignment explanation
Indices: 20749483--20749778 Score: 343
Period size: 138 Copynumber: 2.2 Consensus size: 137
20749473 TCTTCACCTG
* * *
20749483 CGAGCCTTAGTATGACA-TCTGGGAGCTCTGCTCTCTCTAACTCT-AT-TGGAGGTTGT-GACTC
1 CGAGCCTTAATATGACAGT-TGGGAGCTCTGCTCTCGCTAACTCTGATGT-G-GGCTGTAG-CTC
** *
20749544 TTCGCTTGCAAGTCTTAATTTGACAACTAGGAGCTTTGCTCTCACTAACTATGCTAGGGGCTGTA
62 TTCGCTCACAAGTCTTAATTTGACAACTAGGAGCTTTGCTCTCACTAACTATGCT-GAGGCTGTA
*
20749609 GCTATTC-TCATG
126 GCTATTCGTC-TA
* * * * * * *
20749621 TGAGCCTTACTATGACAGTTGGGAGCTTTTCTCTCGCTAATTGTGATGTGGGCTGTAGCTCTTTG
1 CGAGCCTTAATATGACAGTTGGGAGCTCTGCTCTCGCTAACTCTGATGTGGGCTGTAGCTCTTCG
* * *
20749686 CTCACAAGTCTTAGTTTGACAACTAGGAGCTTTGCTCTCACTAGCTGTGCTGAGGCTGTAGCTAT
66 CTCACAAGTCTTAATTTGACAACTAGGAGCTTTGCTCTCACTAACTATGCTGAGGCTGTAGCTAT
20749751 TCGTCTA
131 TCGTCTA
20749758 CGAG-CTTAATATGACAGTTGG
1 CGAGCCTTAATATGACAGTTGG
20749779 ATGCTAGGGG
Statistics
Matches: 135, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
136 16 0.12
137 19 0.14
138 94 0.70
139 5 0.04
140 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (137 bp):
CGAGCCTTAATATGACAGTTGGGAGCTCTGCTCTCGCTAACTCTGATGTGGGCTGTAGCTCTTCG
CTCACAAGTCTTAATTTGACAACTAGGAGCTTTGCTCTCACTAACTATGCTGAGGCTGTAGCTAT
TCGTCTA
Found at i:20760123 original size:13 final size:14
Alignment explanation
Indices: 20760093--20760125 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
20760083 GAGAGGAAGA
20760093 AAGGAGAAAAATGG
1 AAGGAGAAAAATGG
*
20760107 AAGGAGAAAGA-GG
1 AAGGAGAAAAATGG
20760120 AAGGAG
1 AAGGAG
20760126 TGGCCAGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.55, C:0.00, G:0.42, T:0.03
Consensus pattern (14 bp):
AAGGAGAAAAATGG
Found at i:20764949 original size:20 final size:20
Alignment explanation
Indices: 20764908--20764950 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
20764898 ATTTCCTACG
* *
20764908 TTGGCCCATTTTTTCGGTTT
1 TTGGCCCATTTTCTCGCTTT
20764928 TTGGCCCA-TTTCTCGCTCTT
1 TTGGCCCATTTTCTCGCT-TT
20764948 TTG
1 TTG
20764951 ACTCTCCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.05, C:0.26, G:0.19, T:0.51
Consensus pattern (20 bp):
TTGGCCCATTTTCTCGCTTT
Found at i:20769346 original size:27 final size:26
Alignment explanation
Indices: 20769282--20769423 Score: 122
Period size: 27 Copynumber: 5.3 Consensus size: 26
20769272 AGCATGGCTG
* *
20769282 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* * *
20769308 TCAGATATAGATAATCGTGGCTGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
20769336 CCAGAACAGATATATGTAGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** *
20769363 CCAGATTAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
20769390 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
20769417 CTAGAAC
1 CCAGAAC
20769424 GCTTCCTCCA
Statistics
Matches: 96, Mismatches: 17, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
26 4 0.04
27 77 0.80
28 15 0.16
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:20769373 original size:54 final size:54
Alignment explanation
Indices: 20769282--20769417 Score: 159
Period size: 54 Copynumber: 2.5 Consensus size: 54
20769272 AGCATGGCTG
* * *
20769282 CCAGAACAGATA-ATGTGACAGAGTCATCAGATATAGATAATCGTGGCTGAGCCA
1 CCAGAACAGATATATGTG-CAGAGCCACCAGATATAGATAATCGTGGCAGAGCCA
* *
20769336 CCAGAACAGATATATGTAGCAGAGCCACCAGAT-TAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGT-GCAGAGCCACCAGATATAGATAATCGTGGCAGAGCCA
* * *
20769390 CCAGATCAGATATTTGTGGCATAGCCAC
1 CCAGAACAGATATATGT-GCAGAGCCAC
20769418 TAGAACGCTT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
54 54 0.76
55 16 0.23
56 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (54 bp):
CCAGAACAGATATATGTGCAGAGCCACCAGATATAGATAATCGTGGCAGAGCCA
Found at i:20771076 original size:26 final size:26
Alignment explanation
Indices: 20771040--20771200 Score: 261
Period size: 26 Copynumber: 6.2 Consensus size: 26
20771030 CATGAAATTC
20771040 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
20771066 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
20771092 TTA-CATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
20771117 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
20771143 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
20771169 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
20771195 TTATCA
1 TTATCA
20771201 ATTTGTATCA
Statistics
Matches: 128, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
25 23 0.18
26 105 0.82
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:20775209 original size:27 final size:28
Alignment explanation
Indices: 20775172--20775307 Score: 133
Period size: 27 Copynumber: 5.0 Consensus size: 28
20775162 AGCATGGCTG
*
20775172 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGACAGAGCCA
* *
20775198 CCAGATACAGATA-ATCGTGGCTGAGCCA
1 CCAGATACAGATATAT-GTGACAGAGCCA
20775226 CCAGA-ACAGATATATGT-AGCAGAGCCA
1 CCAGATACAGATATATGTGA-CAGAGCCA
* *
20775253 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGACAGAGCCA
* * *
20775280 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGACAGAGCCA
20775307 C
1 C
20775308 TAGAACGCTT
Statistics
Matches: 96, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.05
27 75 0.78
28 16 0.17
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGACAGAGCCA
Found at i:20775236 original size:54 final size:54
Alignment explanation
Indices: 20775172--20775307 Score: 168
Period size: 54 Copynumber: 2.5 Consensus size: 54
20775162 AGCATGGCTG
* *
20775172 CCAGAACAGATA-ATGT-GACAGAGTCACCAGATACAGATAATCGTGGCTGAGCCA
1 CCAGAACAGATATATGTAG-CAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* *
20775226 CCAGAACAGATATATGTAGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTAGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
* * * *
20775280 CCAGATCAGATATTTGTGGCATAGCCAC
1 CCAGAACAGATATATGTAGCAGAGCCAC
20775308 TAGAACGCTT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
54 54 0.75
55 17 0.24
56 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTAGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:20776967 original size:26 final size:26
Alignment explanation
Indices: 20776931--20777092 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
20776921 CATGAAATTC
20776931 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
20776957 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
20776983 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
20777009 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
20777035 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
20777061 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
20777087 TTATCA
1 TTATCA
20777093 ATTTGTATCA
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 130 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:20777064 original size:78 final size:78
Alignment explanation
Indices: 20776931--20777092 Score: 306
Period size: 78 Copynumber: 2.1 Consensus size: 78
20776921 CATGAAATTC
20776931 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
20776996 TTTACCTAACCTA
66 TTTACCTAACCTA
* *
20777009 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
20777074 TTTACCTAACCTA
66 TTTACCTAACCTA
20777087 TTATCA
1 TTATCA
20777093 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
TTTACCTAACCTA
Found at i:20783210 original size:15 final size:15
Alignment explanation
Indices: 20783192--20783230 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
20783182 TCATATATAT
20783192 ATAATTCATTTAACA
1 ATAATTCATTTAACA
20783207 ATAATTCATTTAACA
1 ATAATTCATTTAACA
*
20783222 ATAGTTCAT
1 ATAATTCAT
20783231 CAAGATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (15 bp):
ATAATTCATTTAACA
Found at i:20786411 original size:43 final size:43
Alignment explanation
Indices: 20786363--20786444 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
20786353 CAATTATCTT
20786363 AGATATGAAATTGGGATACAATGATCAAATTGAATAAGTTTTA
1 AGATATGAAATTGGGATACAATGATCAAATTGAATAAGTTTTA
*
20786406 AGATATGATATTGGGATACAATGATCAAATTGAATAAGT
1 AGATATGAAATTGGGATACAATGATCAAATTGAATAAGT
20786445 AGAAGAACTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.32
Consensus pattern (43 bp):
AGATATGAAATTGGGATACAATGATCAAATTGAATAAGTTTTA
Found at i:20793742 original size:17 final size:18
Alignment explanation
Indices: 20793706--20793745 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
20793696 CGGGTCACTT
*
20793706 GCCCATGTTGGCCCACAC
1 GCCCATGTTGGCCCAAAC
*
20793724 GCCCATG-TGGCGCAAAC
1 GCCCATGTTGGCCCAAAC
20793741 GCCCA
1 GCCCA
20793746 GATTGGCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.20, C:0.42, G:0.25, T:0.12
Consensus pattern (18 bp):
GCCCATGTTGGCCCAAAC
Found at i:20793839 original size:17 final size:17
Alignment explanation
Indices: 20793817--20793858 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
20793807 TACTCATATG
**
20793817 GGCCCACACGTCCGTGT
1 GGCCCACACACCCGTGT
20793834 GGCCCACACACCCGTGT
1 GGCCCACACACCCGTGT
20793851 GGCCCACA
1 GGCCCACA
20793859 TGGCCACACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.17, C:0.45, G:0.26, T:0.12
Consensus pattern (17 bp):
GGCCCACACACCCGTGT
Found at i:20804193 original size:27 final size:27
Alignment explanation
Indices: 20804155--20804208 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
20804145 GAAAATTGGT
*
20804155 AGTGTCTACCTAACAAGCAGCACCAAA
1 AGTGCCTACCTAACAAGCAGCACCAAA
* *
20804182 AGTGCCTACCTAACAGGCGGCACCAAA
1 AGTGCCTACCTAACAAGCAGCACCAAA
20804209 GGAAGCAGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.37, C:0.31, G:0.19, T:0.13
Consensus pattern (27 bp):
AGTGCCTACCTAACAAGCAGCACCAAA
Found at i:20810257 original size:16 final size:16
Alignment explanation
Indices: 20810236--20810268 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
20810226 GATTTACAGG
*
20810236 TAAAATCTAAATATGA
1 TAAAATATAAATATGA
20810252 TAAAATATAAATATGA
1 TAAAATATAAATATGA
20810268 T
1 T
20810269 TTACAGGGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (16 bp):
TAAAATATAAATATGA
Found at i:20811340 original size:27 final size:27
Alignment explanation
Indices: 20811310--20811364 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
20811300 CAGTATAAAC
20811310 ACATAGCATAATAGATACAAAGGTTGA
1 ACATAGCATAATAGATACAAAGGTTGA
20811337 ACATAGCATAATAGATACAAAGGTTGA
1 ACATAGCATAATAGATACAAAGGTTGA
20811364 A
1 A
20811365 TCTAACATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.22
Consensus pattern (27 bp):
ACATAGCATAATAGATACAAAGGTTGA
Found at i:20812229 original size:12 final size:11
Alignment explanation
Indices: 20812201--20812248 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
20812191 GGGTTAAGAG
*
20812201 AAAAACAAAAT
1 AAAAAGAAAAT
20812212 -AAAAGAAAAT
1 AAAAAGAAAAT
*
20812222 AGAAAAGAAAAG
1 A-AAAAGAAAAT
*
20812234 AAAAATAAAAT
1 AAAAAGAAAAT
20812245 AAAA
1 AAAA
20812249 TAAAAACAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 9 0.29
11 12 0.39
12 10 0.32
ACGTcount: A:0.81, C:0.02, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAAAGAAAAT
Found at i:20812230 original size:28 final size:27
Alignment explanation
Indices: 20812199--20812254 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 27
20812189 GTGGGTTAAG
20812199 AGAAAA-ACAAAATAAAAGAAAATAGAAA
1 AGAAAAGA-AAAATAAAAGAAAATA-AAA
*
20812227 AGAAAAGAAAAATAAAATAAAATAAAA
1 AGAAAAGAAAAATAAAAGAAAATAAAA
20812254 A
1 A
20812255 CAATCTGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 4 0.15
28 21 0.81
29 1 0.04
ACGTcount: A:0.80, C:0.02, G:0.09, T:0.09
Consensus pattern (27 bp):
AGAAAAGAAAAATAAAAGAAAATAAAA
Found at i:20823244 original size:26 final size:27
Alignment explanation
Indices: 20823215--20823289 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
20823205 TTGTTAAAGC
20823215 AATT-GTTATCCTTC-AGTCTTTGATGT
1 AATTAGTT-TCCTTCTAGTCTTTGATGT
** *
20823241 AATTAGTTTGTTTCTAGTTTTTGATGT
1 AATTAGTTTCCTTCTAGTCTTTGATGT
**
20823268 AATTAGTTTGTTTCTAGT-TTTG
1 AATTAGTTTCCTTCTAGTCTTTG
20823290 TTTCTTTTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 12 0.27
27 32 0.73
ACGTcount: A:0.19, C:0.08, G:0.17, T:0.56
Consensus pattern (27 bp):
AATTAGTTTCCTTCTAGTCTTTGATGT
Found at i:20823263 original size:27 final size:27
Alignment explanation
Indices: 20823233--20823288 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
20823223 TCCTTCAGTC
20823233 TTTGATGTAATTAGTTTGTTTCTAGTT
1 TTTGATGTAATTAGTTTGTTTCTAGTT
20823260 TTTGATGTAATTAGTTTGTTTCTAGTT
1 TTTGATGTAATTAGTTTGTTTCTAGTT
20823287 TT
1 TT
20823289 GTTTCTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.61
Consensus pattern (27 bp):
TTTGATGTAATTAGTTTGTTTCTAGTT
Found at i:20832116 original size:27 final size:28
Alignment explanation
Indices: 20832079--20832218 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
20832069 AGCATGGCTG
** *
20832079 CCAGA-ACAGATA-ATGTGATAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
20832105 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
20832133 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
20832160 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
20832187 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
20832214 CCAGA
1 CCAGA
20832219 ACGCTTCCTC
Statistics
Matches: 105, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.80
28 16 0.15
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:20833800 original size:26 final size:26
Alignment explanation
Indices: 20833764--20833899 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
20833754 CATGATATTC
20833764 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
20833790 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
20833816 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
20833842 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
20833868 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
20833894 TTATCA
1 TTATCA
20833900 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:20836665 original size:22 final size:22
Alignment explanation
Indices: 20836637--20836678 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
20836627 TGAATAAACC
* *
20836637 AAATAAACTTTATTTCTGTAGA
1 AAATAAACTTAATATCTGTAGA
20836659 AAATAAACTTAATATCTGTA
1 AAATAAACTTAATATCTGTA
20836679 AACTGAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (22 bp):
AAATAAACTTAATATCTGTAGA
Found at i:20839218 original size:15 final size:15
Alignment explanation
Indices: 20839195--20839254 Score: 66
Period size: 15 Copynumber: 3.9 Consensus size: 15
20839185 AACAATACTA
*
20839195 AAAAAATAAATAAAT
1 AAAATATAAATAAAT
* * *
20839210 AAATTATAAACATAT
1 AAAATATAAATAAAT
20839225 AAAATATAAATCAAAT
1 AAAATATAAAT-AAAT
*
20839241 AAAATAAAAATAAA
1 AAAATATAAATAAA
20839255 GATATTTAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
15 23 0.64
16 13 0.36
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAATATAAATAAAT
Found at i:20839620 original size:10 final size:10
Alignment explanation
Indices: 20839601--20839640 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
20839591 TGTATGTAAT
20839601 ATAATATATA
1 ATAATATATA
*
20839611 ATAATGTATA
1 ATAATATATA
20839621 ATAATATAATAA
1 ATAATAT-AT-A
20839633 ATAATATA
1 ATAATATA
20839641 CAAAGATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
10 15 0.58
11 3 0.12
12 8 0.31
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (10 bp):
ATAATATATA
Found at i:20839631 original size:25 final size:25
Alignment explanation
Indices: 20839572--20839638 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
20839562 TAATATATAA
20839572 AATAATAT-ATATAGTAA-AATGTAT
1 AATAATATAATATA-TAATAATGTAT
*
20839596 -GTAATATAATATATAATAATGTAT
1 AATAATATAATATATAATAATGTAT
*
20839620 AATAATATAATAAATAATA
1 AATAATATAATATATAATA
20839639 TACAAAGATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
23 9 0.24
24 12 0.32
25 16 0.43
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (25 bp):
AATAATATAATATATAATAATGTAT
Found at i:20844975 original size:26 final size:26
Alignment explanation
Indices: 20844939--20845047 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 26
20844929 TGATACAAAT
*
20844939 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
20844965 TGATAATAGGTTA-GTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
20844990 TGATAATGGGTTAGGTATATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
20845016 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
20845042 TGATAA
1 TGATAA
20845048 GAATTTCATG
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 24 0.31
26 53 0.69
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:20845002 original size:51 final size:52
Alignment explanation
Indices: 20844947--20845047 Score: 159
Period size: 51 Copynumber: 2.0 Consensus size: 52
20844937 ATTGATAAAA
20844947 GGTTAGGTAAATGTTCCATGATAATAGGTTA-GTAAATGTTCCATGATAATG
1 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATG
* * * *
20844998 GGTTAGGTATATGTTTCATGATAATGGGTTAGGTAAATGTTTCATGATAA
1 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAA
20845048 GAATTTCATG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
51 28 0.62
52 17 0.38
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.38
Consensus pattern (52 bp):
GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATG
Found at i:20847078 original size:137 final size:137
Alignment explanation
Indices: 20846832--20847118 Score: 504
Period size: 137 Copynumber: 2.1 Consensus size: 137
20846822 GAGTAGTCTC
*
20846832 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
20846897 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGG-CCAAGTAC
66 TGTTATATGAATAAGGGGATAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGTCC-AGTAC
20846961 CACTGTTA
130 CACTGTTA
20846969 CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
20847034 TGTTATATGAATAAGGGGATAAGGTCCAGTTTATTGTAATCTGAAAAGGGCTCTGGTCCAGTACC
66 TGTTATATGAATAAGGGGATAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGTCCAGTACC
20847099 ACTGTTA
131 ACTGTTA
**
20847106 CCTGAATGGGCTT
1 CCCAAATGGGCTT
20847119 AGGCCCAATA
Statistics
Matches: 143, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
137 141 0.99
138 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATATGAATAAGGGGATAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGTCCAGTACC
ACTGTTA
Found at i:20850005 original size:60 final size:60
Alignment explanation
Indices: 20849912--20850031 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
20849902 TCATGCCAAG
20849912 ATAGAGATCTATTGCCCACCAATCATTTGGGCTTCTTCCTTCTAAATAGAAGAGAAAAAT
1 ATAGAGATCTATTGCCCACCAATCATTTGGGCTTCTTCCTTCTAAATAGAAGAGAAAAAT
*
20849972 ATAGAGATCTATTGTCCACCAATCATTTGGGCTTCTTCCTTCTAAATAGAAGAGAAAAAT
1 ATAGAGATCTATTGCCCACCAATCATTTGGGCTTCTTCCTTCTAAATAGAAGAGAAAAAT
20850032 GTTCCTGACT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (60 bp):
ATAGAGATCTATTGCCCACCAATCATTTGGGCTTCTTCCTTCTAAATAGAAGAGAAAAAT
Found at i:20853118 original size:19 final size:20
Alignment explanation
Indices: 20853074--20853118 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
20853064 ATATTTTTCA
*
20853074 TATTTTTAACATAATTTAGT
1 TATTTTTAACATAATTTAAT
20853094 TA-TTTTATA-AT-ATTTAAT
1 TATTTTTA-ACATAATTTAAT
20853112 TATTTTT
1 TATTTTT
20853119 CGACAAGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 8 0.36
19 11 0.50
20 3 0.14
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
TATTTTTAACATAATTTAAT
Found at i:20853722 original size:20 final size:20
Alignment explanation
Indices: 20853689--20853727 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
20853679 ATATTTTCAC
*
20853689 ATCGTAATTGAAAATAGAGT
1 ATCGTAATTGAAAACAGAGT
* *
20853709 ATCGTAGTTTAAAACAGAG
1 ATCGTAATTGAAAACAGAG
20853728 CTTTTCAGTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.21, T:0.28
Consensus pattern (20 bp):
ATCGTAATTGAAAACAGAGT
Found at i:20857731 original size:42 final size:43
Alignment explanation
Indices: 20857622--20857733 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
20857612 TTAATCTATT
* * *
20857622 CGAGCTTGTTGAGTGGTCCAAGTTCATGATATGTATGAGATTT
1 CGAGCTTGTTGAGTGGTCCAAGTTCATGAGATATATGAGATTC
* * * *
20857665 TGAACTTGTTGAGTGGCCCAAGTTCATGAGATATGTG-GCA-TC
1 CGAGCTTGTTGAGTGGTCCAAGTTCATGAGATATATGAG-ATTC
*
20857707 CGAGCTTGTTGAGTGGTCCGAGTTCAT
1 CGAGCTTGTTGAGTGGTCCAAGTTCAT
20857734 TATGGATGCG
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
42 25 0.44
43 32 0.56
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.34
Consensus pattern (43 bp):
CGAGCTTGTTGAGTGGTCCAAGTTCATGAGATATATGAGATTC
Found at i:20864440 original size:14 final size:14
Alignment explanation
Indices: 20864421--20864449 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
20864411 TTGTTTTTAG
20864421 TCTAATTTTTCTTT
1 TCTAATTTTTCTTT
20864435 TCTAATTTTTCTTT
1 TCTAATTTTTCTTT
20864449 T
1 T
20864450 GTCTGCCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (14 bp):
TCTAATTTTTCTTT
Found at i:20872816 original size:27 final size:28
Alignment explanation
Indices: 20872786--20872840 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
20872776 TTTCTAATTA
* *
20872786 AATTCAATTTTAATCCTTT-TATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
20872813 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
20872841 TATTAATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:20872936 original size:24 final size:22
Alignment explanation
Indices: 20872907--20872954 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
20872897 GTCTATAAAT
*
20872907 TATATTATACTATATATTTTTTTA
1 TATATT-T-CTATATATATTTTTA
*
20872931 TATATTTCTTTATATATTTTTA
1 TATATTTCTATATATATTTTTA
20872953 TA
1 TA
20872955 AACTCGTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.68
23 1 0.05
24 6 0.27
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (22 bp):
TATATTTCTATATATATTTTTA
Found at i:20872946 original size:14 final size:12
Alignment explanation
Indices: 20872917--20872951 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
20872907 TATATTATAC
20872917 TATATATTTTTT
1 TATATATTTTTT
*
20872929 TATATATTTCTT
1 TATATATTTTTT
20872941 TATATATTTTT
1 TATATATTTTT
20872952 ATAAACTCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (12 bp):
TATATATTTTTT
Found at i:20873290 original size:22 final size:22
Alignment explanation
Indices: 20873265--20873307 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
20873255 CTTTCTTATA
*
20873265 TTTTTATATATTATTTATTTTG
1 TTTTTATATACTATTTATTTTG
*
20873287 TTTTTTTATACTATTTATTTT
1 TTTTTATATACTATTTATTTT
20873308 ACTATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTTATATACTATTTATTTTG
Found at i:20876444 original size:31 final size:31
Alignment explanation
Indices: 20876409--20876472 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
20876399 AATTTAAGAG
20876409 AAAGAATTTGGAACTTGAAAAGAAGATAGAA
1 AAAGAATTTGGAACTTGAAAAGAAGATAGAA
*
20876440 AAAGAATTTGGAGCTTGAAAAGAAGATAGAA
1 AAAGAATTTGGAACTTGAAAAGAAGATAGAA
20876471 AA
1 AA
20876473 GCTTGAGGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.55, C:0.03, G:0.23, T:0.19
Consensus pattern (31 bp):
AAAGAATTTGGAACTTGAAAAGAAGATAGAA
Found at i:20880629 original size:40 final size:40
Alignment explanation
Indices: 20880592--20880776 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
20880582 GCTACTCGTT
*
20880592 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
20880632 GAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
20880672 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
20880711 CCAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
20880752 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
20880777 CATCATTCGA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 77 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:20880703 original size:79 final size:81
Alignment explanation
Indices: 20880594--20880776 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 81
20880584 TACTCGTTCA
* * * *
20880594 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAGAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGG
* *
20880657 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
20880674 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCACACCAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
* *
20880737 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
20880753 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
20880777 CATCATTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 28 0.32
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:20888705 original size:40 final size:40
Alignment explanation
Indices: 20888668--20888851 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
20888658 GCTACTCGTT
*
20888668 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
20888708 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* *
20888748 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * ** *
20888787 CAAATGCCTTC-GGATCTTAGTCCGGATATGGCCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
20888828 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
20888852 ACATCATTCG
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
38 3 0.02
39 29 0.24
40 74 0.61
41 15 0.12
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:20888836 original size:79 final size:81
Alignment explanation
Indices: 20888668--20888852 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
20888658 GCTACTCGTT
* *
20888668 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* * *
20888732 GATTTAGTAACTCGCAC
65 GATATAGCAACTAGCAC
* ** *
20888749 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCA
* *
20888811 GATATGGCCACTTAGCA-
65 GATATAGCAAC-TAGCAC
20888828 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
20888853 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGCAACTAGCAC
Found at i:20897317 original size:27 final size:27
Alignment explanation
Indices: 20897287--20897464 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
20897277 ATATTGAGTC
* * * *
20897287 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
20897314 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
20897341 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
20897369 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
20897396 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
20897423 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
20897450 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
20897465 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:20897426 original size:82 final size:81
Alignment explanation
Indices: 20897308--20897463 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
20897298 TGCTATATAA
* *
20897308 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
20897373 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
20897390 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
20897454 CACTTAGTGC
65 CACTTAGTGC
20897464 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:20900860 original size:207 final size:207
Alignment explanation
Indices: 20900337--20901237 Score: 1477
Period size: 207 Copynumber: 4.4 Consensus size: 207
20900327 GCAGATCTAG
* * *
20900337 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTATAAGGAACAAATCGAA-ATTATAGT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGC
20900401 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
65 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
*
20900466 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCT
130 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAAAGCAGACACATAGCAGATCTGGCCT
*
20900531 TCAGATGTTTAGA
195 TCAGATGTTTATA
*
20900544 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGC
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGC
* * * *
20900607 TGATTTGGCTTTCACATGTTTACGATGAAGCAAATCTAAGATGATTTGACATCTCTGTATTGTTA
65 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* * *
20900672 GAGAACAAATTGAAGTTTAGCATCTCCATATTCGACGGAAAGCAGACACATAGCAGATCTGGCCT
130 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAAAGCAGACACATAGCAGATCTGGCCT
20900737 TCAGATGTTTATA
195 TCAGATGTTTATA
*
20900750 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAATAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* *
20900815 GATTTGGCTTTCATGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTAAG
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
20900880 AGAGCAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAA-CAGACACATAGTAGATCTAGCCT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGA-AAGCAGACACATAGCAGATCTGGCCT
20900944 TCAGATGTTTATA
195 TCAGATGTTTATA
20900957 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* *
20901022 GAATTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAA
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * *
20901087 AGAACAAATAGAAGTTTGGCGTCTCCATGTTTGACGGAGAGCAGACACATAACAGATCTGGCCTT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAAAGCAGACACATAGCAGATCTGGCCTT
*
20901152 CAGATGTTTACA
196 CAGATGTTTATA
* *
20901164 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAACT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
*
20901229 AATTTGGCT
66 GATTTGGCT
20901238 GAAGCAGACC
Statistics
Matches: 646, Mismatches: 44, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
206 194 0.30
207 449 0.70
208 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (207 bp):
CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAAAGCAGACACATAGCAGATCTGGCCTT
CAGATGTTTATA
Found at i:20902799 original size:28 final size:28
Alignment explanation
Indices: 20902768--20902823 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
20902758 TTTCTAATTA
* * *
20902768 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
20902796 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
20902824 TATTAATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:20902914 original size:17 final size:17
Alignment explanation
Indices: 20902874--20902915 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
20902864 TTTTATCACA
20902874 TATTTTAT-CTATAAAT
1 TATTTTATACTATAAAT
* *
20902890 TATATTATACTATATAT
1 TATTTTATACTATAAAT
*
20902907 TTTTTTATA
1 TATTTTATA
20902916 TATTTCTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (17 bp):
TATTTTATACTATAAAT
Found at i:20902919 original size:24 final size:22
Alignment explanation
Indices: 20902890--20902937 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
20902880 ATCTATAAAT
*
20902890 TATATTATACTATATATTTTTTTA
1 TATATT-T-CTATATATATTTTTA
*
20902914 TATATTTCTTTATATATTTTTA
1 TATATTTCTATATATATTTTTA
20902936 TA
1 TA
20902938 AAATTGTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.68
23 1 0.05
24 6 0.27
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (22 bp):
TATATTTCTATATATATTTTTA
Found at i:20902929 original size:14 final size:12
Alignment explanation
Indices: 20902900--20902934 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
20902890 TATATTATAC
20902900 TATATATTTTTT
1 TATATATTTTTT
*
20902912 TATATATTTCTT
1 TATATATTTTTT
20902924 TATATATTTTT
1 TATATATTTTT
20902935 ATAAAATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (12 bp):
TATATATTTTTT
Found at i:20903257 original size:22 final size:22
Alignment explanation
Indices: 20903232--20903274 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
20903222 CTTTCTTATA
*
20903232 TTTTTATATATTATTTATTTTG
1 TTTTTATATACTATTTATTTTG
*
20903254 TTTTTTTATACTATTTATTTT
1 TTTTTATATACTATTTATTTT
20903275 ACTATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTTATATACTATTTATTTTG
Found at i:20910965 original size:33 final size:33
Alignment explanation
Indices: 20910923--20910989 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
20910913 TTTAAGGAGA
20910923 AAATATTAAAGGGGGAATGATCTAGTTTGAAGT
1 AAATATTAAAGGGGGAATGATCTAGTTTGAAGT
20910956 AAATATTAAAGGGGGAATGATCTAGTTTGAAGT
1 AAATATTAAAGGGGGAATGATCTAGTTTGAAGT
20910989 A
1 A
20910990 TAGAAGTGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.40, C:0.03, G:0.27, T:0.30
Consensus pattern (33 bp):
AAATATTAAAGGGGGAATGATCTAGTTTGAAGT
Found at i:20916852 original size:14 final size:14
Alignment explanation
Indices: 20916835--20916872 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
20916825 TATAGCAATA
20916835 AAAATATATGTAAT
1 AAAATATATGTAAT
*
20916849 AAAATATATATAAT
1 AAAATATATGTAAT
*
20916863 ACAATATATG
1 AAAATATATG
20916873 AAGAACGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (14 bp):
AAAATATATGTAAT
Found at i:20917060 original size:7 final size:7
Alignment explanation
Indices: 20917032--20917136 Score: 58
Period size: 7 Copynumber: 15.0 Consensus size: 7
20917022 TACTAAAAAC
20917032 ATATAAT
1 ATATAAT
20917039 ATA-AAT
1 ATATAAT
20917045 ATA-AAT
1 ATATAAT
20917051 ATATAAT
1 ATATAAT
20917058 ATATAAT
1 ATATAAT
*
20917065 AAAT-AT
1 ATATAAT
*
20917071 ATGATAAAA
1 AT-AT-AAT
*
20917080 ATTAAAAAT
1 A-T-ATAAT
*
20917089 GTATAAT
1 ATATAAT
20917096 AATATAAT
1 -ATATAAT
* *
20917104 AGATAAA
1 ATATAAT
*
20917111 ATATAGT
1 ATATAAT
20917118 A-A-AAT
1 ATATAAT
*
20917123 AAATAAT
1 ATATAAT
20917130 ATATAAT
1 ATATAAT
20917137 GAAAATACAT
Statistics
Matches: 74, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
5 3 0.04
6 17 0.23
7 41 0.55
8 7 0.09
9 4 0.05
10 2 0.03
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (7 bp):
ATATAAT
Found at i:20917113 original size:17 final size:16
Alignment explanation
Indices: 20916976--20917150 Score: 61
Period size: 15 Copynumber: 10.9 Consensus size: 16
20916966 TAAATTTATA
*
20916976 AATAAAAT-GTATAAT
1 AATAAAATAATATAAT
*
20916991 AATATGAATAATATAAT
1 AATA-AAATAATATAAT
* * *
20917008 TATAGAATAATAT-GT
1 AATAAAATAATATAAT
*
20917023 ACTAAAA-ACATATAAT
1 AATAAAATA-ATATAAT
20917039 -ATAAATATAA-ATATAT
1 AATAAA-ATAATATA-AT
20917055 AATATATAATAAATATATGAT
1 AATA-A-AAT-AATATA--AT
*
20917076 AA-AAATTAA-A-AAT
1 AATAAAATAATATAAT
* *
20917089 -GTATAATAATATAAT
1 AATAAAATAATATAAT
20917104 AGATAAAAT-ATAGTAA-
1 A-ATAAAATAATA-TAAT
20917120 AAT-AAATAATAT-AT
1 AATAAAATAATATAAT
20917134 AATGAAAATACATATAA
1 AAT-AAAATA-ATATAA
20917151 CATATAGTAA
Statistics
Matches: 119, Mismatches: 16, Indels: 47
0.65 0.09 0.26
Matches are distributed among these distances:
13 8 0.07
14 10 0.08
15 29 0.24
16 27 0.23
17 27 0.23
18 6 0.05
19 4 0.03
20 4 0.03
21 4 0.03
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATAAT
Found at i:20917122 original size:41 final size:41
Alignment explanation
Indices: 20917039--20917136 Score: 98
Period size: 41 Copynumber: 2.4 Consensus size: 41
20917029 AACATATAAT
*
20917039 ATAAAT-ATAAATATATAATATATAATAAATATATGATAAAA
1 ATAAATAATATATA-ATAATATATAATAAATATATGATAAAA
*
20917080 ATTAAA-AATGTATAATAATATAATAGATAAA-ATAT-AGT-AAA
1 A-TAAATAATATATAATAATAT-ATA-ATAAATATATGA-TAAAA
20917121 ATAAATAATATATAAT
1 ATAAATAATATATAAT
20917137 GAAAATACAT
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
40 4 0.08
41 22 0.46
42 17 0.35
43 5 0.10
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (41 bp):
ATAAATAATATATAATAATATATAATAAATATATGATAAAA
Found at i:20927446 original size:15 final size:16
Alignment explanation
Indices: 20927422--20927451 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
20927412 TTTTTATTCT
20927422 TTTTACTTTTTTTGAC
1 TTTTACTTTTTTTGAC
20927438 TTTTA-TTTTTTTGA
1 TTTTACTTTTTTTGA
20927452 GAACAATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.13, C:0.07, G:0.07, T:0.73
Consensus pattern (16 bp):
TTTTACTTTTTTTGAC
Found at i:20928478 original size:18 final size:18
Alignment explanation
Indices: 20928422--20928480 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
20928412 TGAAGAGAAA
* * *
20928422 AAAAATAAAACAACTAAA
1 AAAAATAAAAAAAATAAT
*
20928440 AAAAATTAAAAAGAAA-GAT
1 AAAAA-TAAAAA-AAATAAT
20928459 AAAAATAAAAAAAATAAT
1 AAAAATAAAAAAAATAAT
20928477 AAAA
1 AAAA
20928481 TAATAATAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
17 3 0.09
18 17 0.52
19 11 0.33
20 2 0.06
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.14
Consensus pattern (18 bp):
AAAAATAAAAAAAATAAT
Found at i:20928587 original size:22 final size:22
Alignment explanation
Indices: 20928539--20928598 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
20928529 ATGATAATAG
*
20928539 TAAAAAAATAGGAAAGAAAAAA
1 TAAAAAAATAGAAAAGAAAAAA
* *
20928561 GAAAAAAATAGAAATAG-CAAAA
1 TAAAAAAATAGAAA-AGAAAAAA
*
20928583 TAAAAATAATAAAAAA
1 TAAAAA-AATAGAAAA
20928599 TAATAAAAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
22 22 0.71
23 9 0.29
ACGTcount: A:0.77, C:0.02, G:0.10, T:0.12
Consensus pattern (22 bp):
TAAAAAAATAGAAAAGAAAAAA
Found at i:20928701 original size:15 final size:15
Alignment explanation
Indices: 20928671--20928699 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
20928661 AATTAATTAC
20928671 TAAAATAAAAATAAA
1 TAAAATAAAAATAAA
20928686 TAAAAT-AAAATAAA
1 TAAAATAAAAATAAA
20928700 ATTGGGGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAAATAAAAATAAA
Found at i:20930480 original size:18 final size:18
Alignment explanation
Indices: 20930453--20930489 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
20930443 CATCTTCTTG
*
20930453 TCTCAGTTTTGGTTCATC
1 TCTCAATTTTGGTTCATC
20930471 TCTCAATTTTGGTTCATC
1 TCTCAATTTTGGTTCATC
20930489 T
1 T
20930490 TTAACTAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.14, C:0.22, G:0.14, T:0.51
Consensus pattern (18 bp):
TCTCAATTTTGGTTCATC
Done.