Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 72 of 333
Found at i:22120541 original size:24 final size:25
Alignment explanation
Indices: 22120433--22120541 Score: 111
Period size: 25 Copynumber: 4.4 Consensus size: 25
22120423 GGAGGAAGTG
* *
22120433 CAAAAG-GGTTTTGCCCCAGTTTAC
1 CAAAAGAGGCTTTGCCCCAGTTTAT
* *
22120457 CGAAAAG-GGCTTTGCCCTAGTTTAC
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
22120482 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
22120507 CAAAA-AGGGCTTTGCCCCAG-TTAT
1 CAAAAGA-GGCTTTGCCCCAGTTTAT
*
22120531 TAAAAGAGGCT
1 CAAAAGAGGCT
22120542 AGGCCTCAAG
Statistics
Matches: 76, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
24 17 0.22
25 59 0.78
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:22120783 original size:30 final size:31
Alignment explanation
Indices: 22120749--22120831 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
22120739 CGTTTACAGT
22120749 AAAGGCTTTGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTTGGCCCAGTGATATGAATAATGA
* * *
22120779 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTTGGCCCAGTGATATGAATAATGA
22120810 AAAGGCTTTGGCCCAGT-ATATG
1 AAAGGCTTTGGCCCAGTGATATG
22120832 TTGAGATTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 25 0.53
31 22 0.47
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAGTGATATGAATAATGA
Found at i:22120814 original size:31 final size:30
Alignment explanation
Indices: 22120749--22120826 Score: 120
Period size: 31 Copynumber: 2.6 Consensus size: 30
22120739 CGTTTACAGT
*
22120749 AAAGGCTTTGGCCCAGTGATATGATAATGA
1 AAAGGCTTTGGCCCAGTGACATGATAATGA
* *
22120779 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTTGGCCCAGTGACATG-ATAATGA
22120810 AAAGGCTTTGGCCCAGT
1 AAAGGCTTTGGCCCAGT
22120827 ATATGTTGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 21 0.49
31 22 0.51
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (30 bp):
AAAGGCTTTGGCCCAGTGACATGATAATGA
Found at i:22122521 original size:35 final size:35
Alignment explanation
Indices: 22122469--22122549 Score: 117
Period size: 35 Copynumber: 2.3 Consensus size: 35
22122459 TAGAGACAGT
* * *
22122469 CAGACACAGATTCAGGCTTAAGCCCATTACTGATC
1 CAGATACAGATTCAGGCTTAAGCCCATTACAGATA
* *
22122504 CAGATGCAGATTCAGGCTTAAGCCCATTCCAGATA
1 CAGATACAGATTCAGGCTTAAGCCCATTACAGATA
22122539 CAGATACAGAT
1 CAGATACAGAT
22122550 ACAAATACAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (35 bp):
CAGATACAGATTCAGGCTTAAGCCCATTACAGATA
Found at i:22122544 original size:6 final size:6
Alignment explanation
Indices: 22122533--22122562 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
22122523 AAGCCCATTC
*
22122533 CAGATA CAGATA CAGATA CAAATA CAGATA
1 CAGATA CAGATA CAGATA CAGATA CAGATA
22122563 TGCAAATAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.53, C:0.17, G:0.13, T:0.17
Consensus pattern (6 bp):
CAGATA
Found at i:22124237 original size:43 final size:43
Alignment explanation
Indices: 22124117--22124279 Score: 172
Period size: 43 Copynumber: 3.8 Consensus size: 43
22124107 AGCTCGTACA
*
22124117 ATGCCAACGTCCCAGATGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAATCAAATA-CG
** * *
22124160 ATGCCATTGTCCTAGATAG-GGTCTTACAC-AAAATCAAATACG
1 ATGCCAACGTCCCAGAT-GTGGTCTTACACGTAAATCAAATACG
* *
22124202 ATGCCAACGTCTCATATGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAATCA-AA-TACG
* *
22124246 ATGCCAACGTCCCAGACGAGGTCTTACACAGTAA
1 ATGCCAACGTCCCAGATGTGGTCTTACAC-GTAA
22124280 CACATATCAA
Statistics
Matches: 98, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 24 0.24
43 38 0.39
44 30 0.31
45 5 0.05
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGATGTGGTCTTACACGTAAATCAAATACG
Found at i:22124274 original size:86 final size:85
Alignment explanation
Indices: 22124117--22124275 Score: 205
Period size: 86 Copynumber: 1.9 Consensus size: 85
22124107 AGCTCGTACA
* ** * *
22124117 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATCGATGCCATTGTCCTAGATAGGGT
1 ATGCCAACGTCCCAGATGTGGTCTTACACGTAATCAAATATCGATGCCAACGTCCCAGAGAGGGT
22124182 CTTACACAAAATCAAATACG
66 CTTACACAAAATCAAATACG
* * *
22124202 ATGCCAACGTCTCATATGTGGTCTTACACGTAAATCATAA-GTCGATGCCAACGTCCCAGACGA-
1 ATGCCAACGTCCCAGATGTGGTCTTACACGT-AATCA-AATATCGATGCCAACGTCCCAGA-GAG
22124265 GGTCTTACACA
63 GGTCTTACACA
22124276 GTAACACATA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
85 28 0.44
86 32 0.51
87 3 0.05
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (85 bp):
ATGCCAACGTCCCAGATGTGGTCTTACACGTAATCAAATATCGATGCCAACGTCCCAGAGAGGGT
CTTACACAAAATCAAATACG
Found at i:22129624 original size:25 final size:25
Alignment explanation
Indices: 22129596--22129734 Score: 145
Period size: 25 Copynumber: 5.6 Consensus size: 25
22129586 ATAATAGATT
*
22129596 GGCACATAGCCATCAATATCATATC
1 GGCACAAAGCCATCAATATCATATC
* *** * *
22129621 GGCACAAAGACAAGGATAACAGATC
1 GGCACAAAGCCATCAATATCATATC
*
22129646 GGCACATAGCCATCAATATCATATC
1 GGCACAAAGCCATCAATATCATATC
* ** *
22129671 GGGACAAAGCCATTGATAAT-AGATC
1 GGCACAAAGCCATCAAT-ATCATATC
*
22129696 GGCACATAGCCATCAATATCATATC
1 GGCACAAAGCCATCAATATCATATC
22129721 GGCACAAAGCCATC
1 GGCACAAAGCCATC
22129735 GATAACAGAA
Statistics
Matches: 87, Mismatches: 25, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
24 2 0.02
25 83 0.95
26 2 0.02
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (25 bp):
GGCACAAAGCCATCAATATCATATC
Found at i:22129650 original size:50 final size:50
Alignment explanation
Indices: 22129568--22129743 Score: 255
Period size: 50 Copynumber: 3.5 Consensus size: 50
22129558 TGATAATACG
* * *
22129568 ATCGGTACAAAGCCA-CTGATAATAGATTGGCACATAGCCATCAATATCAT
1 ATCGGCACAAAGCCATC-GATAACAGATCGGCACATAGCCATCAATATCAT
* **
22129618 ATCGGCACAAAGACAAGGATAACAGATCGGCACATAGCCATCAATATCAT
1 ATCGGCACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCAT
* * *
22129668 ATCGGGACAAAGCCATTGATAATAGATCGGCACATAGCCATCAATATCAT
1 ATCGGCACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCAT
22129718 ATCGGCACAAAGCCATCGATAACAGA
1 ATCGGCACAAAGCCATCGATAACAGA
22129744 ATAATTGGCT
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
50 112 1.00
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.19
Consensus pattern (50 bp):
ATCGGCACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCAT
Found at i:22129930 original size:41 final size:41
Alignment explanation
Indices: 22129885--22130005 Score: 161
Period size: 41 Copynumber: 3.0 Consensus size: 41
22129875 AAAAGCCACT
** *
22129885 GTGGATCCACGGTAATCAAGCAACCATGCGATCCTTAATCA
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCA
* * *
22129926 GTGGATCCACGATCGTCAAGTAACCATGCGATCCTCAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCA
** *
22129967 GTGGATCCAAAGTCGTCAAACAACCATGCGATCCTCAAT
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
22130006 TTCTTCCTTC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCA
Found at i:22130313 original size:27 final size:27
Alignment explanation
Indices: 22130243--22130561 Score: 284
Period size: 27 Copynumber: 11.8 Consensus size: 27
22130233 TTTCACCCTA
* * * * *
22130243 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
** *
22130270 CAAGGGTATTTCAGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* *
22130297 CAATGGTATTTTTGTAATTTTTG-AAAGT
1 CAAGGGTATTTTGGTAA-TTTTGCAAA-T
* *
22130325 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
22130352 CAAGAGTATTTTTGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
** *
22130379 CAAGGGTATTTCAGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
22130406 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * **
22130433 CGAGGGTATTTCGGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* *
22130460 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
22130487 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
22130513 CTAGGGGTATTTTGGTAATTTTGTAAAC
1 C-AAGGGTATTTTGGTAATTTTGCAAAT
*
22130541 CAAGGGTA-TTTAGTAATTTTG
1 CAAGGGTATTTTGGTAATTTTG
22130562 TAAACTAATG
Statistics
Matches: 250, Mismatches: 37, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
26 12 0.05
27 213 0.85
28 25 0.10
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGCAAAT
Found at i:22130450 original size:81 final size:81
Alignment explanation
Indices: 22130246--22130560 Score: 321
Period size: 81 Copynumber: 3.9 Consensus size: 81
22130236 CACCCTACAA
* * * * * * * *
22130246 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGCAAACCAATGGTATTTTTG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTCCAAACCAAGGGTATTTTAG
** * *
22130311 TAATTTTTGAAAGTCAA
66 TAATTTTACAAA-TTAG
* ** * ** * *
22130328 GGGTATTTTTGTAATTTTGTAAATCAAGAGTATTTTTGTAATTTTCCAAATCAAGGGTATTTCAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTCCAAACCAAGGGTATTTTAG
*
22130393 TAATTTTCCAAATTAG
66 TAATTTTACAAATTAG
* * * *
22130409 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAA-TTTCACAAATCAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTC-CAAACCAAGGGTATTTTA
22130473 GTAATTTTACAAATTAG
65 GTAATTTTACAAATTAG
* * **
22130490 GGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTTA
1 GGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTTCCAAACCAAGGGTATTTTA
22130553 GTAATTTT
65 GTAATTTT
22130561 GTAAACTAAT
Statistics
Matches: 192, Mismatches: 38, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
80 16 0.08
81 113 0.59
82 63 0.33
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTCCAAACCAAGGGTATTTTAG
TAATTTTACAAATTAG
Found at i:22133677 original size:41 final size:41
Alignment explanation
Indices: 22133615--22133737 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
22133605 TTAAAGCCAC
*
22133615 CGGTGGATCCATAGTCATCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCATAGTCGTCAAGCAACCATGCGATCCTTAAT
* * * *
22133656 CGGTGGGTCCATAGTCGTCAAGCAACCGTGCTATCCTGAAT
1 CGGTGGATCCATAGTCGTCAAGCAACCATGCGATCCTTAAT
* *
22133697 CAGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCATAGTCGTCAAGCAACCATGCGATCCTTAAT
22133738 TTCTTCCTTC
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CGGTGGATCCATAGTCGTCAAGCAACCATGCGATCCTTAAT
Found at i:22133993 original size:26 final size:27
Alignment explanation
Indices: 22133963--22134018 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
22133953 TATAAGGGTG
22133963 TTTTGGTAAATCTACAAACCAA-GGTA
1 TTTTGGTAAATCTACAAACCAATGGTA
* * *
22133989 TTTTGGTAATTTTGCAAACCAATGGTA
1 TTTTGGTAAATCTACAAACCAATGGTA
22134016 TTT
1 TTT
22134019 CTGTAATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.39
Consensus pattern (27 bp):
TTTTGGTAAATCTACAAACCAATGGTA
Found at i:22134024 original size:27 final size:27
Alignment explanation
Indices: 22133956--22134288 Score: 225
Period size: 27 Copynumber: 12.4 Consensus size: 27
22133946 TTCACCCTAT
* * * * *
22133956 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTGCAAATC
*
22133983 AA-GGTATTTTGGTAATTTTGCAAACC
1 AAGGGTATTTTGGTAATTTTGCAAATC
*
22134009 AATGGTATTTCT-GTAATTTTTG-AAAGTC
1 AAGGGTATTT-TGGTAA-TTTTGCAAA-TC
* *
22134037 AAGGGTATTTCT-GTAATTTTGTAAATT
1 AAGGGTATTT-TGGTAATTTTGCAAATC
* *
22134064 AGGGGTATTTCT-GTAATTTT-CTAAATT
1 AAGGGTATTT-TGGTAATTTTGC-AAATC
** *
22134091 AAGGGTATTTCAGTAATTTTCCAAATC
1 AAGGGTATTTTGGTAATTTTGCAAATC
* * *
22134118 AAGGATATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTGCAAATC
* ***
22134145 GAGGGTATTTTGGTAATTTCAAAAAT-
1 AAGGGTATTTTGGTAATTTTGCAAATC
** * *
22134171 TTGAGGTATTTTGGTAATTTTACAAACC
1 AAG-GGTATTTTGGTAATTTTGCAAATC
* *
22134199 AAGGGTATTTTGGTAATTTTGCTAATT
1 AAGGGTATTTTGGTAATTTTGCAAATC
* *
22134226 GAGGGTATTTTGGTAATTTTGTAAA-C
1 AAGGGTATTTTGGTAATTTTGCAAATC
*** * *
22134252 TAAGGGTA-TCCAGTAATTTTGTAAACC
1 -AAGGGTATTTTGGTAATTTTGCAAATC
22134279 AAGGGTATTT
1 AAGGGTATTT
22134289 CAGTAATTCT
Statistics
Matches: 252, Mismatches: 41, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
26 44 0.17
27 181 0.72
28 27 0.11
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTGCAAATC
Found at i:22134153 original size:81 final size:81
Alignment explanation
Indices: 22133985--22134288 Score: 298
Period size: 81 Copynumber: 3.8 Consensus size: 81
22133975 TACAAACCAA
** * * **
22133985 GGTATTTTGGTAATTTTGC-AAACCAATGGTATTTCTGTAATTTTTGAAAGTCAAGGGTATTTCT
1 GGTATTTTGGTAATTTT-CTAAATTAAGGGTATTTCAGTAATTTTACAAA-TCAAGGGTATTT-T
*
22134049 -GTAATTTTGTAAATT-AGG
63 GGTAATTTTGCAAATTGA-G
* *
22134067 GGTATTTCT-GTAATTTTCTAAATTAAGGGTATTTCAGTAATTTTCCAAATCAAGGATATTTTGG
1 GGTATTT-TGGTAATTTTCTAAATTAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTGG
*
22134131 TAATTTTACAAATTGAG
65 TAATTTTGCAAATTGAG
* * ** *
22134148 GGTATTTTGGTAA-TTTCAAAAATT-TGAGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
1 GGTATTTTGGTAATTTTC-TAAATTAAG-GGTATTTCAGTAATTTTACAAATCAAGGGTATTTTG
*
22134211 GTAATTTTGCTAATTGAG
64 GTAATTTTGCAAATTGAG
* * * ** *
22134229 GGTATTTTGGTAATTTTGTAAACTAAGGGTA-TCCAGTAATTTTGTAAACCAAGGGTATTT
1 GGTATTTTGGTAATTTTCTAAATTAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTT
22134289 CAGTAATTCT
Statistics
Matches: 186, Mismatches: 27, Indels: 20
0.80 0.12 0.09
Matches are distributed among these distances:
80 31 0.17
81 110 0.59
82 44 0.24
83 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.43
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTCTAAATTAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTGGT
AATTTTGCAAATTGAG
Found at i:22134273 original size:26 final size:27
Alignment explanation
Indices: 22134238--22134296 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 27
22134228 GGGTATTTTG
*
22134238 GTAATTTTGTAAACTAAGGGTA-TCCA
1 GTAATTTTGTAAACCAAGGGTATTCCA
*
22134264 GTAATTTTGTAAACCAAGGGTATTTCA
1 GTAATTTTGTAAACCAAGGGTATTCCA
22134291 GTAATT
1 GTAATT
22134297 CTACCCTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 21 0.70
27 9 0.30
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (27 bp):
GTAATTTTGTAAACCAAGGGTATTCCA
Found at i:22134315 original size:27 final size:27
Alignment explanation
Indices: 22134285--22134388 Score: 145
Period size: 27 Copynumber: 3.9 Consensus size: 27
22134275 AACCAAGGGT
22134285 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* ** *
22134312 ATTTTAGTAATTCTATTCTATAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
22134339 ATTTTAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
22134366 ATTTCAGTAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
22134389 ATATGAGATT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:22136577 original size:25 final size:25
Alignment explanation
Indices: 22136549--22136598 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
22136539 CCTTATATTA
* * *
22136549 TGAAAATGACTGTTTTGCCCCTAGG
1 TGAAAATGACCGTTATACCCCTAGG
22136574 TGAAAATGACCGTTATACCCCTAGG
1 TGAAAATGACCGTTATACCCCTAGG
22136599 GTTTACTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (25 bp):
TGAAAATGACCGTTATACCCCTAGG
Found at i:22136659 original size:20 final size:20
Alignment explanation
Indices: 22136634--22136680 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
22136624 ATTTTGATAT
22136634 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
22136654 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
22136674 ACATGAT
1 ACATGAT
22136681 GTATTCATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:22136793 original size:26 final size:26
Alignment explanation
Indices: 22136730--22136879 Score: 243
Period size: 27 Copynumber: 5.8 Consensus size: 26
22136720 GAGGAAGTGC
22136730 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
22136756 TAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
22136783 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
22136809 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
22136836 AAAAGGG-TT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
22136860 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
22136880 ATTAAAGAAG
Statistics
Matches: 118, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
24 21 0.18
25 14 0.12
26 32 0.27
27 51 0.43
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:22136814 original size:53 final size:52
Alignment explanation
Indices: 22136730--22136879 Score: 243
Period size: 53 Copynumber: 2.9 Consensus size: 52
22136720 GAGGAAGTGC
22136730 AAAAGGGCTTATGCCCCAGTTTATTGTAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG-AAAAGGGCTTATGCCCCAGTTTATTG
*
22136783 AAAAGGGCTTATGCCCTAGTTTATTGAAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG-AAAAGGGCTTATGCCCCAGTTTATTG
*
22136836 AAAAGGG-TT-TGCCCCAGTTTACTGAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTT
22136880 ATTAAAGAAG
Statistics
Matches: 93, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
49 10 0.11
50 10 0.11
51 13 0.14
52 2 0.02
53 58 0.62
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:22139552 original size:44 final size:40
Alignment explanation
Indices: 22139504--22139603 Score: 112
Period size: 39 Copynumber: 2.4 Consensus size: 40
22139494 TAGAACGATT
*
22139504 TCGCACACTTAGTGCCATTTCAATTAACCGAAGCTATCTCAGTA
1 TCGCACACTTAGTGCCA-TT-AA-TAACCGAAGCTAT-TCAGAA
* **
22139548 TCGCACACTTAGTGCC-TTAATAGCCGAAGCTATTTTGAA
1 TCGCACACTTAGTGCCATTAATAACCGAAGCTATTCAGAA
*
22139587 TTGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
22139604 AATACCATTG
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
39 18 0.36
40 12 0.24
41 2 0.04
42 2 0.04
44 16 0.32
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (40 bp):
TCGCACACTTAGTGCCATTAATAACCGAAGCTATTCAGAA
Found at i:22143189 original size:10 final size:10
Alignment explanation
Indices: 22143174--22143216 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
22143164 CAATTTACCA
22143174 ACCAAATCAT
1 ACCAAATCAT
*
22143184 ACCAAATCTAA
1 ACCAAATC-AT
22143195 ACCAAAATCAT
1 ACC-AAATCAT
*
22143206 ACCAAAGCAT
1 ACCAAATCAT
22143216 A
1 A
22143217 TATTTCAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 15 0.54
11 8 0.29
12 5 0.18
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.16
Consensus pattern (10 bp):
ACCAAATCAT
Found at i:22149006 original size:40 final size:40
Alignment explanation
Indices: 22148923--22149108 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
22148913 TTGAATGATG
* * ***
22148923 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCGTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* *
22148963 TCCGGACTAAGAT-CCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22149003 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22149043 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
22149084 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22149109 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22149115 original size:40 final size:40
Alignment explanation
Indices: 22148976--22149141 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
22148966 GGACTAAGAT
22148976 CCGAAGGCATTT-ATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGA-GCGAGTTACTAAATCCGGGTTAAGTC
* *
22149016 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTC
1 CCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTC
* * *
22149056 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGAGCGAGTTACTA-AATCCGGGTTAAGTC
* * * *
22149096 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATT
1 CCGAAGGCATTTGAGCGAGTTA-CTAAATCCGGGTTAAGTC
22149135 CCGAAGG
1 CCGAAGG
22149142 TACGTGATTT
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
39 15 0.14
40 93 0.85
41 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:22156973 original size:40 final size:40
Alignment explanation
Indices: 22156890--22157075 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
22156880 TTGAATGATG
* * ***
22156890 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCGTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* *
22156930 TCCGGACTAAGAT-CCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22156970 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22157010 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
22157051 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22157076 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22157082 original size:40 final size:40
Alignment explanation
Indices: 22156943--22157108 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
22156933 GGACTAAGAT
22156943 CCGAAGGCATTT-ATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGA-GCGAGTTACTAAATCCGGGTTAAGTC
* *
22156983 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTC
1 CCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTC
* * *
22157023 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGAGCGAGTTACTA-AATCCGGGTTAAGTC
* * * *
22157063 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATT
1 CCGAAGGCATTTGAGCGAGTTA-CTAAATCCGGGTTAAGTC
22157102 CCGAAGG
1 CCGAAGG
22157109 TACGTGATTT
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
39 15 0.14
40 93 0.85
41 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:22159799 original size:19 final size:19
Alignment explanation
Indices: 22159777--22159814 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
22159767 ATACCAAACT
22159777 CAAAATT-AAAGTTCCAAAA
1 CAAAATTAAAAG-TCCAAAA
22159796 CAAAATTAAAAGTCCAAAA
1 CAAAATTAAAAGTCCAAAA
22159815 GTTCGTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.61, C:0.16, G:0.05, T:0.18
Consensus pattern (19 bp):
CAAAATTAAAAGTCCAAAA
Found at i:22160037 original size:26 final size:26
Alignment explanation
Indices: 22160008--22160057 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
22159998 TTAGATCAAA
*
22160008 ATTTTCATTTTTTTAGAACATATATC
1 ATTTTCATATTTTTAGAACATATATC
22160034 ATTTTCATATTTTTAGAACATATA
1 ATTTTCATATTTTTAGAACATATA
22160058 ACATATTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.52
Consensus pattern (26 bp):
ATTTTCATATTTTTAGAACATATATC
Found at i:22161233 original size:10 final size:11
Alignment explanation
Indices: 22161208--22161238 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
22161198 AGAATACTCA
22161208 AAAAGAAAAAG
1 AAAAGAAAAAG
22161219 AAAAGAAAAAG
1 AAAAGAAAAAG
22161230 -AAAGAAAAA
1 AAAAGAAAAA
22161239 ACGTAAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:22170474 original size:55 final size:54
Alignment explanation
Indices: 22170345--22170538 Score: 221
Period size: 55 Copynumber: 3.6 Consensus size: 54
22170335 TTGGTAAGAT
* ** *
22170345 AAGGATATCATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
22170399 AAGGAAATCATGTAAGACCATGTCAACACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
22170454 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
** *
22170507 AAGGATACCACATAAGACCATGTCAAGACATG
1 AAGGATACCATGTAAGACCATGCCAAGACATG
22170539 ACAATGGTAA
Statistics
Matches: 118, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 29 0.25
54 40 0.34
55 41 0.35
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:22170553 original size:53 final size:54
Alignment explanation
Indices: 22170345--22170552 Score: 213
Period size: 53 Copynumber: 3.9 Consensus size: 54
22170335 TTGGTAAGAT
* ** *
22170345 AAGGATATCATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTATAAGGC
* * * * * *
22170399 AAGGAAATCATGTAAGACCATGTCAACACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTT-CTATAAGGC
* * * *
22170454 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTATAAGGC
** * * *
22170507 AAGGATACCACATAAGACCATGTCAAGACATGACAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTC
22170553 AAAAAGGAAA
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 40 0.31
55 41 0.32
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTATAAGGC
Found at i:22174525 original size:30 final size:30
Alignment explanation
Indices: 22174491--22174550 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
22174481 TCCTTAACTC
22174491 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
22174521 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
22174551 GGGCTCGGGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:22179862 original size:26 final size:26
Alignment explanation
Indices: 22179833--22179888 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
22179823 TGATACAAAT
22179833 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22179859 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22179885 TGAT
1 TGAT
22179889 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:22180721 original size:43 final size:43
Alignment explanation
Indices: 22180666--22180807 Score: 214
Period size: 43 Copynumber: 3.3 Consensus size: 43
22180656 TTTCGAAAAA
*
22180666 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGATTTTTTCGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGATTTTTTCAC
* *
22180709 AAACTCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGATTTTTTCAC
* * *
22180752 AAACGCCGCTAAAGATCATAACCTTTAGCGGC-ACTTTTCTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGA-TTTTTTCAC
22180795 AAACGCCGCTAAA
1 AAACGCCGCTAAA
22180808 AATAATGATC
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGATTTTTTCAC
Found at i:22183525 original size:48 final size:48
Alignment explanation
Indices: 22183454--22183567 Score: 201
Period size: 48 Copynumber: 2.4 Consensus size: 48
22183444 CAAGATAAAT
*
22183454 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
* *
22183502 AGATATGTATATATGGTAAAGCCGAATGGCTAATATGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
22183550 AGATATATATATGTGGTA
1 AGATATATATATGTGGTA
22183568 TATATGAGAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
Found at i:22183573 original size:24 final size:24
Alignment explanation
Indices: 22183546--22183591 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
22183536 ATGAAATATG
22183546 TATGAGATATATATATGTGGTATA
1 TATGAGATATATATATGTGGTATA
*
22183570 TATGAGATATGTATATGTGGTA
1 TATGAGATATATATATGTGGTA
22183592 AAGCCGAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (24 bp):
TATGAGATATATATATGTGGTATA
Found at i:22183579 original size:72 final size:72
Alignment explanation
Indices: 22183498--22183639 Score: 266
Period size: 72 Copynumber: 2.0 Consensus size: 72
22183488 GTGAAATATG
*
22183498 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATG
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
22183563 TGGTATA
66 TGGTATA
*
22183570 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
22183635 TGGTA
66 TGGTA
22183640 AATCCGAATG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.34
Consensus pattern (72 bp):
TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
TGGTATA
Found at i:22183601 original size:120 final size:120
Alignment explanation
Indices: 22183454--22183687 Score: 387
Period size: 120 Copynumber: 1.9 Consensus size: 120
22183444 CAAGATAAAT
** *
22183454 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGT
1 AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
22183519 AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTATATATG
66 AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTATATATG
* *
22183574 AGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGT
1 AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
* * * *
22183639 AAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATTTGGTA
66 AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTA
22183688 AAGCCGGATG
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
120 105 1.00
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.33
Consensus pattern (120 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTATATATG
Found at i:22183622 original size:48 final size:48
Alignment explanation
Indices: 22183570--22183721 Score: 241
Period size: 48 Copynumber: 3.2 Consensus size: 48
22183560 ATGTGGTATA
**
22183570 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
22183618 TATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
22183666 TATGAGATATGTATATTTGGTAAAGCCGGATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
22183714 TAGGAGAT
1 TATGAGAT
22183722 GTGTGTATAT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
Found at i:22183912 original size:37 final size:37
Alignment explanation
Indices: 22183862--22183964 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
22183852 GGAAATATAT
22183862 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22183899 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
22183936 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
22183965 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:22185313 original size:40 final size:40
Alignment explanation
Indices: 22185257--22185532 Score: 387
Period size: 40 Copynumber: 7.2 Consensus size: 40
22185247 TATATATATT
*
22185257 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATC
*
22185297 CGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATC
*
22185337 CGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATC
* *
22185377 CGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATC
22185417 CGGGCTAAGTTCCGAAGAGCA-T--T-C----G-TG--T-
1 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATC
*
22185445 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATC
* * *
22185485 TGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATC
1 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATC
22185525 CGGGCTAA
1 CGGGCTAA
22185533 ACCTCGAAGG
Statistics
Matches: 213, Mismatches: 11, Indels: 24
0.86 0.04 0.10
Matches are distributed among these distances:
28 21 0.10
29 2 0.01
31 2 0.01
32 2 0.01
36 2 0.01
37 2 0.01
39 2 0.01
40 180 0.85
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATC
Found at i:22185457 original size:28 final size:28
Alignment explanation
Indices: 22185417--22185471 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
22185407 GTGATATATC
22185417 CGGGCTAAGTTCCGAAGAGCATTCGTGT
1 CGGGCTAAGTTCCGAAGAGCATTCGTGT
22185445 CGGGCTAAGTTCCGAAGAGCATTCGTG
1 CGGGCTAAGTTCCGAAGAGCATTCGTG
22185472 CTAGTGATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.24
Consensus pattern (28 bp):
CGGGCTAAGTTCCGAAGAGCATTCGTGT
Found at i:22185490 original size:68 final size:68
Alignment explanation
Indices: 22185377--22185508 Score: 246
Period size: 68 Copynumber: 1.9 Consensus size: 68
22185367 GTGATGTATC
22185377 CGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCG
1 CGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCG
22185442 TGT
66 TGT
* *
22185445 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAAGTTCCGAAGAGCATTC
1 CGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTC
22185509 ATGCTAGTGA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (68 bp):
CGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCG
TGT
Found at i:22185526 original size:108 final size:108
Alignment explanation
Indices: 22185337--22185532 Score: 347
Period size: 108 Copynumber: 1.8 Consensus size: 108
22185327 GTGATGTATC
* * *
22185337 CGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCG
1 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCAAAGAGCATTCA
22185402 TGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGT
66 TGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGT
* *
22185445 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAAGTTCCGAAGAGCATTCA
1 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCAAAGAGCATTCA
22185510 TGCTAGTGATATATCCGGGCTAA
66 TGCTAGTGATATATCCGGGCTAA
22185533 ACCTCGAAGG
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
108 83 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (108 bp):
CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCAAAGAGCATTCA
TGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGT
Found at i:22185541 original size:40 final size:40
Alignment explanation
Indices: 22185445--22185552 Score: 139
Period size: 40 Copynumber: 2.7 Consensus size: 40
22185435 GCATTCGTGT
** *
22185445 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAACCTCCGAAGAGCATTCATGCTAGTGATATATC
* **
22185485 TGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATC
1 CGGGCTAACCTCCGAAGAGCATTCATGCTAGTGATATATC
22185525 CGGGCTAAACCT-CGAAG-GCATTCATGCT
1 CGGGCT-AACCTCCGAAGAGCATTCATGCT
22185553 GGAGTTATGA
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 11 0.18
40 48 0.77
41 3 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CGGGCTAACCTCCGAAGAGCATTCATGCTAGTGATATATC
Found at i:22185656 original size:57 final size:57
Alignment explanation
Indices: 22185560--22185691 Score: 160
Period size: 57 Copynumber: 2.3 Consensus size: 57
22185550 GCTGGAGTTA
* *
22185560 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGT-AG
1 TGAGGCACTGTGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAAATCAGTCAG
* * * ** *
22185616 TTGAGGCACTATGTGTGCGAGTTCTTTAATCGAGTGCTATGTGTGCGAAATCAGTCAG
1 -TGAGGCACTGTGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAAATCAGTCAG
*
22185674 TG-GGCACTGTGTATGCGA
1 TGAGGCACTGTGTGTGCGA
22185692 AGTGTGTTTC
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
56 14 0.22
57 48 0.75
58 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAAATCAGTCAG
Found at i:22189055 original size:48 final size:48
Alignment explanation
Indices: 22188984--22189097 Score: 201
Period size: 48 Copynumber: 2.4 Consensus size: 48
22188974 CAAGATAAAT
*
22188984 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
* *
22189032 AGATATGTATATATGGTAAAGCCGAATGGCTAATATGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
22189080 AGATATATATATGTGGTA
1 AGATATATATATGTGGTA
22189098 TATATGAGAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG
Found at i:22189103 original size:24 final size:24
Alignment explanation
Indices: 22189076--22189121 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
22189066 ATGAAATATG
22189076 TATGAGATATATATATGTGGTATA
1 TATGAGATATATATATGTGGTATA
*
22189100 TATGAGATATGTATATGTGGTA
1 TATGAGATATATATATGTGGTA
22189122 AAGCCGAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (24 bp):
TATGAGATATATATATGTGGTATA
Found at i:22189109 original size:72 final size:72
Alignment explanation
Indices: 22189028--22189169 Score: 266
Period size: 72 Copynumber: 2.0 Consensus size: 72
22189018 GTGAAATATG
*
22189028 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATG
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
22189093 TGGTATA
66 TGGTATA
*
22189100 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
22189165 TGGTA
66 TGGTA
22189170 AATCCGAATG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.34
Consensus pattern (72 bp):
TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
TGGTATA
Found at i:22189131 original size:120 final size:120
Alignment explanation
Indices: 22188984--22189217 Score: 387
Period size: 120 Copynumber: 1.9 Consensus size: 120
22188974 CAAGATAAAT
** *
22188984 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGT
1 AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
22189049 AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTATATATG
66 AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTATATATG
* *
22189104 AGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGT
1 AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
* * * *
22189169 AAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATTTGGTA
66 AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTA
22189218 AAGCCGGATG
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
120 105 1.00
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.33
Consensus pattern (120 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTATATATG
Found at i:22189152 original size:48 final size:48
Alignment explanation
Indices: 22189100--22189251 Score: 241
Period size: 48 Copynumber: 3.2 Consensus size: 48
22189090 ATGTGGTATA
**
22189100 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
22189148 TATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
22189196 TATGAGATATGTATATTTGGTAAAGCCGGATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
22189244 TAGGAGAT
1 TATGAGAT
22189252 GTGTGTATAT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
Found at i:22189442 original size:37 final size:37
Alignment explanation
Indices: 22189392--22189494 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
22189382 GGAAATATAT
22189392 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22189429 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
22189466 TCCGGGTAAGACCCGATAACTACATGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
22189495 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:22191622 original size:15 final size:16
Alignment explanation
Indices: 22191596--22191626 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
22191586 TGTTTCTTGC
22191596 TTTTAGATCATATATA
1 TTTTAGATCATATATA
22191612 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
22191627 AGATAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:22194555 original size:7 final size:7
Alignment explanation
Indices: 22194543--22194567 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22194533 ATATAGACTA
22194543 AAATATT
1 AAATATT
22194550 AAATATT
1 AAATATT
22194557 AAATATT
1 AAATATT
22194564 AAAT
1 AAAT
22194568 TTTTAAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATATT
Found at i:22194585 original size:14 final size:14
Alignment explanation
Indices: 22194566--22194614 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
22194556 TAAATATTAA
22194566 ATTTTTAAGTTTTTT
1 ATTTTTAA-TTTTTT
*
22194581 ATTTTTTATTTTTT
1 ATTTTTAATTTTTT
* *
22194595 ATTTTTAAATTTTA
1 ATTTTTAATTTTTT
22194609 ATTTTT
1 ATTTTT
22194615 TTGAAGATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 23 0.77
15 7 0.23
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (14 bp):
ATTTTTAATTTTTT
Found at i:22194592 original size:6 final size:7
Alignment explanation
Indices: 22194575--22194615 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
22194565 AATTTTTAAG
22194575 TTTTTTA
1 TTTTTTA
22194582 TTTTTTA
1 TTTTTTA
22194589 TTTTTTA
1 TTTTTTA
*
22194596 TTTTTAA
1 TTTTTTA
* *
22194603 ATTTTAA
1 TTTTTTA
22194610 TTTTTT
1 TTTTTT
22194616 TGAAGATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTTA
Found at i:22195937 original size:42 final size:42
Alignment explanation
Indices: 22195832--22196052 Score: 249
Period size: 41 Copynumber: 5.4 Consensus size: 42
22195822 GACTATATGA
* * * * *
22195832 CTTTTAGCGACATTTTACCAAAAGCGCAGTTAATGCTCTCGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
22195874 C-TTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCTGGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
22195915 CTTTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCTCTGGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
** *
22195957 C-TTTAGCGGAATTTTACCAAAAGCGCCACTAATGCTCT-GT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
22195997 -TTTTAGCGGCGTTTTAACAAAAAACGCCGC-AATTACTCT-G-
1 CTTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAA-TGCTCTGGT
*
22196037 CTTTTAGTGGCGTTTT
1 CTTTTAGCGGCGTTTT
22196053 TGTTAAAATG
Statistics
Matches: 155, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
40 16 0.10
41 99 0.64
42 40 0.26
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (42 bp):
CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:22195972 original size:83 final size:82
Alignment explanation
Indices: 22195832--22196018 Score: 259
Period size: 83 Copynumber: 2.3 Consensus size: 82
22195822 GACTATATGA
* * * * **
22195832 CTTTTAGCGACATTTTACCAAAAGCGCAGTTAATGCTCTCGTCTTTAGCGGCGTTTTACCAAAAG
1 CTTTTAGCGGCGTTTTAACAAAAGCGCAGCTAATGCTCTCGTCTTTAGCGGAATTTTACCAAAAG
* *
22195897 TGCCGCTAATGCTCTGGT
66 CGCCACTAATGCTCT-GT
* * *
22195915 CTTTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCTCTGGTCTTTAGCGGAATTTTACCAAAAG
1 CTTTTAGCGGCGTTTTAACAAAAGCGCAGCTAATGCTCTCGTCTTTAGCGGAATTTTACCAAAAG
22195980 CGCCACTAATGCTCTGT
66 CGCCACTAATGCTCTGT
22195997 -TTTTAGCGGCGTTTTAACAAAA
1 CTTTTAGCGGCGTTTTAACAAAA
22196019 AACGCCGCAA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 21 0.23
82 2 0.02
83 70 0.75
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (82 bp):
CTTTTAGCGGCGTTTTAACAAAAGCGCAGCTAATGCTCTCGTCTTTAGCGGAATTTTACCAAAAG
CGCCACTAATGCTCTGT
Found at i:22197034 original size:26 final size:26
Alignment explanation
Indices: 22196971--22197046 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
22196961 AAAAGCAGCT
* * * *
22196971 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-GTGCA
22196999 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGGTGCA
*
22197025 AAATTACTGTTATACCTCTAGG
1 AAATTACTGTTATACCCCTAGG
22197047 GTTAATTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 24 0.56
27 1 0.02
28 18 0.42
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTGCA
Found at i:22197199 original size:27 final size:26
Alignment explanation
Indices: 22197169--22197227 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
22197159 ATGCCAGAAT
* *
22197169 TATCTGATCTAGTGGCTTTGCCACATA
1 TATCTGATCTAGTGGCTCTACCACA-A
* * *
22197196 TATCTGTTTTGGTGGCTCTACCACAA
1 TATCTGATCTAGTGGCTCTACCACAA
22197222 TATCTG
1 TATCTG
22197228 TATTTGGTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (26 bp):
TATCTGATCTAGTGGCTCTACCACAA
Found at i:22197233 original size:27 final size:27
Alignment explanation
Indices: 22197180--22197236 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
22197170 ATCTGATCTA
* *
22197180 GTGGCTTTGCCACATATATCTGTTTTG
1 GTGGCTCTACCACATATATCTGTTTTG
22197207 GTGGCTCTACCACA-ATATCTGTATTTG
1 GTGGCTCTACCACATATATCTGT-TTTG
22197234 GTG
1 GTG
22197237 ACATCGTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 8 0.30
27 19 0.70
ACGTcount: A:0.18, C:0.19, G:0.23, T:0.40
Consensus pattern (27 bp):
GTGGCTCTACCACATATATCTGTTTTG
Found at i:22203516 original size:26 final size:26
Alignment explanation
Indices: 22203487--22203594 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
22203477 TGATACAAAT
22203487 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
22203513 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22203539 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22203565 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22203591 TGAT
1 TGAT
22203595 GGGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:22205101 original size:26 final size:26
Alignment explanation
Indices: 22205038--22205113 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 26
22205028 AAAAGCAGCT
* * * *
22205038 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-GTGCA
22205066 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGGTGCA
22205092 AAATTACTGTTATACCCCTAGG
1 AAATTACTGTTATACCCCTAGG
22205114 GTTAATTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 25 0.57
27 1 0.02
28 18 0.41
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTGCA
Found at i:22205257 original size:27 final size:28
Alignment explanation
Indices: 22205217--22205331 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 28
22205207 AGGAAGCGTC
*
22205217 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
22205244 CTGGTGGCTCTGCCAC-ATATATCTGTAT
1 CTGGTGGCTCTGCCACAAT-TATCTGTAT
* *
22205272 CTGGTGACT-TCGTCACAATTATCTG-AT
1 CTGGTGGCTCT-GCCACAATTATCTGTAT
22205299 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
22205326 CTGGTG
1 CTGGTG
22205332 ACTTCGTCAC
Statistics
Matches: 77, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
26 8 0.10
27 46 0.60
28 21 0.27
29 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATTATCTGTAT
Found at i:22205342 original size:27 final size:26
Alignment explanation
Indices: 22205217--22205349 Score: 135
Period size: 27 Copynumber: 4.9 Consensus size: 26
22205207 AGGAAGCGTC
* *
22205217 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGAT
*
22205244 CTGGTGGCTCTGCCACATATATCTGTAT
1 CTGGTGACTCTGCCACA-ATATCTG-AT
*
22205272 CTGGTGACT-TCGTCACAATTATCTGAT
1 CTGGTGACTCT-GCCACAA-TATCTGAT
*
22205299 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTG-AT
*
22205326 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
22205350 GCAGCCTCGC
Statistics
Matches: 92, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
26 7 0.08
27 62 0.67
28 23 0.25
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGAT
Found at i:22205344 original size:54 final size:55
Alignment explanation
Indices: 22205230--22205349 Score: 226
Period size: 55 Copynumber: 2.2 Consensus size: 55
22205220 GTGGCTATGC
22205230 CACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTATCTGGTGACTTCGT
1 CACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTATCTGGTGACTTCGT
22205285 CACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACTTCGT
1 CACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTATCTGGTGACTTCGT
22205339 CACAA-TATCTG
1 CACAATTATCTG
22205350 GCAGCCTCGC
Statistics
Matches: 65, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
53 6 0.09
54 28 0.43
55 31 0.48
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (55 bp):
CACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTATCTGGTGACTTCGT
Found at i:22217009 original size:86 final size:86
Alignment explanation
Indices: 22216860--22217030 Score: 315
Period size: 86 Copynumber: 2.0 Consensus size: 86
22216850 TTTATAACAG
* *
22216860 TAAATGTCTTTCTCCGTTGCTTTCAAAATTTAAAACACAATAACAAAAACATTACCTTGTGAATC
1 TAAATATCTTTCTCCGTTGCTTTCAAAATTTAAAACACAATAACAAAAACATTACCTTATGAATC
22216925 TGAATCTCTCCCTAAAATCAA
66 TGAATCTCTCCCTAAAATCAA
22216946 TAAATATCTTTCTCCGTTGCTTTCAAAATTTAAAACACAATAACAAAAACATTACCTTATGAATC
1 TAAATATCTTTCTCCGTTGCTTTCAAAATTTAAAACACAATAACAAAAACATTACCTTATGAATC
*
22217011 TGAATCTCTCCCTCAAATCA
66 TGAATCTCTCCCTAAAATCA
22217031 GCCAACTGTT
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.33
Consensus pattern (86 bp):
TAAATATCTTTCTCCGTTGCTTTCAAAATTTAAAACACAATAACAAAAACATTACCTTATGAATC
TGAATCTCTCCCTAAAATCAA
Found at i:22221128 original size:27 final size:25
Alignment explanation
Indices: 22221093--22221192 Score: 110
Period size: 26 Copynumber: 3.8 Consensus size: 25
22221083 AGCATGGCTG
*
22221093 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAG-CA
*
22221119 CCAGATACAGATAATCGTGGCAGACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCA
* *
22221146 CTAGAACAGATATATGTGGCAGAGCC
1 CCAGAACAGATA-ATGTGGCAGAGCA
*
22221172 CCAGATCAGATAATTGTGGCA
1 CCAGAACAGATAA-TGTGGCA
22221193 TAACCACCAG
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
25 1 0.02
26 38 0.60
27 17 0.27
28 7 0.11
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (25 bp):
CCAGAACAGATAATGTGGCAGAGCA
Found at i:22221199 original size:53 final size:53
Alignment explanation
Indices: 22221095--22221199 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 53
22221085 CATGGCTGCC
*
22221095 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGACCACT
1 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAAACCACT
* * *
22221148 AGAACAGATATATGTGGCAGAG-CCCCAGAT-CAGATAATTGTGGCATAACCAC
1 AGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCA-AACCAC
22221200 CAGGACGCTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
52 14 0.30
53 22 0.48
54 10 0.22
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (53 bp):
AGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAAACCACT
Found at i:22222624 original size:24 final size:24
Alignment explanation
Indices: 22222597--22222643 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
22222587 CTAGATTTCC
**
22222597 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
22222621 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
22222644 CTCCTACAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:22228937 original size:27 final size:26
Alignment explanation
Indices: 22228902--22229012 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
22228892 AGCATGGCTG
* *
22228902 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
22228928 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
22228956 CTAGAACAGATATATGTGGCAGAGCCG
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
22228983 CCAGATCAGATAATTGTGGCATA-CCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
22229009 CCAG
1 CCAG
22229013 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 12 0.17
27 44 0.62
28 15 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:22230457 original size:24 final size:24
Alignment explanation
Indices: 22230430--22230476 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
22230420 CTAGATTTCC
*
22230430 TCCCTTATCTACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
22230454 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
22230477 CTCCTGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.38, G:0.00, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:22233140 original size:40 final size:40
Alignment explanation
Indices: 22233085--22233329 Score: 309
Period size: 40 Copynumber: 6.2 Consensus size: 40
22233075 CGGATGATAA
* * * *
22233085 CGAAGGCATTCGTGCTAGTGACTA-ATTCCGGGCTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* * *
22233125 CGAAGGCATTTGTGCTAGTGACTA-ATTTCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
*
22233165 CGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
22233205 CGAAGGCATTTGTGCGAGTTACTATGTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
22233245 CGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
22233285 CGAAGGCATTTGAGCGAG-TAGCTACATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
22233324 CGAAGG
1 CGAAGG
22233330 TACTTGGTTT
Statistics
Matches: 187, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 16 0.09
40 170 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:22241499 original size:40 final size:40
Alignment explanation
Indices: 22241444--22241648 Score: 274
Period size: 40 Copynumber: 5.2 Consensus size: 40
22241434 TGGATGATAA
*
22241444 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTGC
1 CGAAGGCATTTGTGCTAGTGACTATA-TCCGGGCTAAGTCC
22241484 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTATA-TCCGGGCTAAGTCC
*
22241524 CGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCC
* * *
22241564 CGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCC
* * * *
22241604 CGAAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCTAGTGA-CTATATCCGGGCTAAGTCC
22241643 CGAAGG
1 CGAAGG
22241649 TACTTGGTTT
Statistics
Matches: 155, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 15 0.10
40 139 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCC
Found at i:22244059 original size:32 final size:32
Alignment explanation
Indices: 22244018--22244085 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
22244008 TACTCAATTG
*
22244018 AATTTCCATACATACATGTACCATCTCGTACC
1 AATTTCCATACATACATGTACCATCTCATACC
22244050 AATTTCCATACATACATGTACCATCTCATACC
1 AATTTCCATACATACATGTACCATCTCATACC
22244082 AATT
1 AATT
22244086 CTCGTACTCG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.29, G:0.04, T:0.32
Consensus pattern (32 bp):
AATTTCCATACATACATGTACCATCTCATACC
Found at i:22244192 original size:28 final size:28
Alignment explanation
Indices: 22244164--22244263 Score: 92
Period size: 28 Copynumber: 3.5 Consensus size: 28
22244154 CGATACCTCG
*
22244164 CACACTAAGTGCCATTATGGATGTTTCG
1 CACACTAAGTGCCATTATGGATGTTTCA
* ** * * **
22244192 CACACTAAGTACCATCCTCGTTACTTCA
1 CACACTAAGTGCCATTATGGATGTTTCA
* *
22244220 CACACTAAGTGCCATTCAGGGATGTATCA
1 CACACTAAGTGCCATT-ATGGATGTTTCA
*
22244249 CATACTAAGTGCCAT
1 CACACTAAGTGCCAT
22244264 CCCGGATACT
Statistics
Matches: 53, Mismatches: 18, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
28 34 0.64
29 19 0.36
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (28 bp):
CACACTAAGTGCCATTATGGATGTTTCA
Found at i:22244274 original size:57 final size:55
Alignment explanation
Indices: 22244147--22244290 Score: 162
Period size: 57 Copynumber: 2.5 Consensus size: 55
22244137 ACAATAGATT
* * * *
22244147 CCATACCCGATACCTCGCACACTAAGTGCCATTATGGATGTTTCGCACACTAAGTA
1 CCAT-CCCGATACTTCGCACACTAAGTGCCATTAGGGATGTATCACACACTAAGTA
* * * *
22244203 CCATCCTCGTTACTTCACACACTAAGTGCCATTCAGGGATGTATCACATACTAAGTG
1 CCATCC-CGATACTTCGCACACTAAGTGCCATT-AGGGATGTATCACACACTAAGTA
**
22244260 CCATCCCGGATACTTCGCACGTTAAGTGCCA
1 CCATCCC-GATACTTCGCACACTAAGTGCCA
22244291 CATATAAATA
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
55 2 0.03
56 28 0.38
57 43 0.59
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (55 bp):
CCATCCCGATACTTCGCACACTAAGTGCCATTAGGGATGTATCACACACTAAGTA
Found at i:22249871 original size:49 final size:49
Alignment explanation
Indices: 22249793--22249976 Score: 208
Period size: 49 Copynumber: 3.7 Consensus size: 49
22249783 GTCACGTGTT
* *
22249793 TAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCATGTG
* * * * * *
22249842 TAGTACTAAATGCAGGCTACCATGCGTACCCGAAAACTGTGATC-AAGTGTG
1 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-T-TGGTCGCA-TGTG
* * * ** *
22249893 TAGTAGTAAGTGTAGGCTACTACGTATACCAGATTATTGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCATGTG
22249942 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
22249977 GCTTCGGCTA
Statistics
Matches: 106, Mismatches: 25, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
49 68 0.64
50 4 0.04
51 34 0.32
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (49 bp):
TAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCATGTG
Found at i:22249967 original size:100 final size:100
Alignment explanation
Indices: 22249788--22249971 Score: 287
Period size: 100 Copynumber: 1.8 Consensus size: 100
22249778 GTGAGGTCAC
* * * *
22249788 GTGTTTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACTAAAT
22249853 GCAGGCTACCATGCGTACCCGAAAACTGTGATCAA
66 GCAGGCTACCATGCGTACCCGAAAACTGTGATCAA
* * * *
22249888 GTGTGTAGTAGTAAGTGTAGGCTACTACGTATACCAGATTATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACTAAAT
*
22249953 GCAGGCTACTATGCGTACC
66 GCAGGCTACCATGCGTACC
22249972 AGATAGCTTC
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACTAAAT
GCAGGCTACCATGCGTACCCGAAAACTGTGATCAA
Found at i:22252967 original size:15 final size:15
Alignment explanation
Indices: 22252947--22253001 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
22252937 GTATCTTGGG
22252947 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
22252962 TTTCTTTATTCT-GA
1 TTTCTTTATTCTGGA
*
22252976 GTTT-TCTA-TCTTGGA
1 -TTTCTTTATTC-TGGA
22252991 TTTCTTTATTC
1 TTTCTTTATTC
22253002 GATTTTCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
13 2 0.06
14 9 0.27
15 20 0.61
16 2 0.06
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:22255725 original size:47 final size:47
Alignment explanation
Indices: 22255666--22255832 Score: 182
Period size: 47 Copynumber: 3.6 Consensus size: 47
22255656 TGAGGTCATG
*
22255666 TGTGTAGCACTAAGTGCAGGCTACTACGTGTACAGATAT-TGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTA-GTGTACAGATATATGGTCGCA
* * * * *
22255713 TGTGTAGTACTAAATGCAGGCTACTATGTGTACCGA-AAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTA-GTGTACAGATATA-TG-G-TCGCA
*
22255763 TGTGTAGTACTAAGTGCA-GCTACTAGTATACAGAT-TATGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTAGTGTACAGATATATGGTCGCA
*
22255808 TG-GTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
22255833 TGGTACCAGA
Statistics
Matches: 100, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
44 14 0.14
45 12 0.12
46 2 0.02
47 34 0.34
48 10 0.10
49 8 0.08
50 20 0.20
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (47 bp):
TGTGTAGTACTAAGTGCAGGCTACTAGTGTACAGATATATGGTCGCA
Found at i:22276270 original size:30 final size:31
Alignment explanation
Indices: 22276225--22276282 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
22276215 GACCACACTC
*
22276225 CTCTTTCCTTTTTCTTTTTTCCCTTCCCCTTT
1 CTCTTTCCTTTTTCTTTTCT-CCTTCCCCTTT
22276257 CTCTTT-C-TTTTCTTTTCTCCTTCCCC
1 CTCTTTCCTTTTTCTTTTCTCCTTCCCC
22276283 CACCCATTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 8 0.32
30 10 0.40
31 1 0.04
32 6 0.24
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (31 bp):
CTCTTTCCTTTTTCTTTTCTCCTTCCCCTTT
Found at i:22276344 original size:26 final size:26
Alignment explanation
Indices: 22276288--22276347 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
22276278 TCCCCCACCC
*
22276288 ATTCTTTCTCCCTCTTTCCCTTTCTTT
1 ATTCTTTCTCCCTCTTTCCC-TCCTTT
*
22276315 -TTCTTTTTCCCTCTTCTCCC-CCTTT
1 ATTCTTTCTCCCTCTT-TCCCTCCTTT
22276340 ATTCTTTC
1 ATTCTTTC
22276348 CCTCCGCCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 4 0.14
26 20 0.71
27 4 0.14
ACGTcount: A:0.03, C:0.38, G:0.00, T:0.58
Consensus pattern (26 bp):
ATTCTTTCTCCCTCTTTCCCTCCTTT
Found at i:22281648 original size:14 final size:14
Alignment explanation
Indices: 22281631--22281679 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
22281621 TTGTATTTGT
*
22281631 GGTTTAGGGTGT-A
1 GGTTTAGGGTCTCA
*
22281644 GGGTTTATGGTCTCA
1 -GGTTTAGGGTCTCA
*
22281659 GGTTTAGGGTTTCA
1 GGTTTAGGGTCTCA
22281673 GGTTTAG
1 GGTTTAG
22281680 AGTATAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 29 0.97
15 1 0.03
ACGTcount: A:0.14, C:0.06, G:0.39, T:0.41
Consensus pattern (14 bp):
GGTTTAGGGTCTCA
Found at i:22281769 original size:17 final size:17
Alignment explanation
Indices: 22281711--22281770 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 17
22281701 TAGAAGATAA
22281711 ATATAAATAAGATAAAT
1 ATATAAATAAGATAAAT
* *
22281728 ATATATATAA-ATTATTATTT
1 ATATAAATAAGA-TA--A-AT
22281748 AATATAAATAAGATAAAT
1 -ATATAAATAAGATAAAT
22281766 ATATA
1 ATATA
22281771 TAAATTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
16 1 0.03
17 16 0.48
18 1 0.03
19 2 0.06
20 1 0.03
21 11 0.33
22 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
ATATAAATAAGATAAAT
Found at i:22281795 original size:42 final size:38
Alignment explanation
Indices: 22281710--22281783 Score: 134
Period size: 36 Copynumber: 2.0 Consensus size: 38
22281700 TTAGAAGATA
22281710 AATATAAATAAGATAAATATATATATAAATTATTATTT
1 AATATAAATAAGATAAATATATATATAAATTATTATTT
22281748 AATATAAATAAGAT-AA-ATATATATAAATTATTATTT
1 AATATAAATAAGATAAATATATATATAAATTATTATTT
22281784 TAAAATAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 20 0.56
37 2 0.06
38 14 0.39
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (38 bp):
AATATAAATAAGATAAATATATATATAAATTATTATTT
Found at i:22283775 original size:39 final size:39
Alignment explanation
Indices: 22283717--22283799 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 39
22283707 TCCATATATG
*
22283717 ACTG-TCTTAAATTTGTTATTTTGCATGATTATTTGAGA
1 ACTGCTCTTAAATTTGTTATTCTGCATGATTATTTGAGA
22283755 ACTGCTCTTAAATTTGTTATTCTGCATGATTATTTGAGA
1 ACTGCTCTTAAATTTGTTATTCTGCATGATTATTTGAGA
*
22283794 TCTGCT
1 ACTGCT
22283800 TCTGTCAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 4 0.10
39 38 0.90
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (39 bp):
ACTGCTCTTAAATTTGTTATTCTGCATGATTATTTGAGA
Found at i:22285347 original size:60 final size:60
Alignment explanation
Indices: 22285274--22285399 Score: 243
Period size: 60 Copynumber: 2.1 Consensus size: 60
22285264 TGGGCCTAAT
*
22285274 TTTATTTCCATGTTCTTTTGTAGAAATTAGTTATGAACAAGGTAATATATATAGATATAG
1 TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
22285334 TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
1 TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
22285394 TTTATT
1 TTTATT
22285400 AATGAACAAG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.45
Consensus pattern (60 bp):
TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
Found at i:22285985 original size:106 final size:105
Alignment explanation
Indices: 22285726--22286263 Score: 777
Period size: 106 Copynumber: 5.2 Consensus size: 105
22285716 ATTTTAAAAA
* * * * ** * *
22285726 TTTTATTTTATTTTGAAATTATCGAAATAAATTAAAACGTATTTAAAGTTTTA-TTTGAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
* * ** *
22285790 TATTTGATTTTAATTTTATCACGGAAAATATTTTATCTAC
66 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
*
22285830 TTTTA--TT-TTTTAAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
* *
22285892 TACTTGATTTGAATTTACTCACTAAAAATATTTTGTCTAC
66 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
*
22285932 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
1 TTTTATTTT-ATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATT
*
22285997 TTA-TTAGATTTTAATTTAATCACAAAAAATATTTTGTCTAC
65 TTACTT-GATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* * *
22286038 TTTTATTTTATTTTTTAAATTACCTAACTAAATTAAAATGTCTTTAAAGCTTTATTTTAAATATT
1 TTTTATTTTA-TTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATT
22286103 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
65 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* *
22286144 TTTTATTTTATTTTTTAAATTACCTAATTAAATTAATTTTTCTTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTA-TTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATT
22286209 TTACTTGATTTTAATTTAATCACTAAAAATA--TTGTCTAC
65 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
22286248 -TTTATTTTATTTTTAA
1 TTTTATTTTATTTTTAA
22286264 TTCAAAATAA
Statistics
Matches: 396, Mismatches: 30, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
101 36 0.09
102 57 0.14
103 9 0.02
104 15 0.04
105 3 0.01
106 274 0.69
107 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.53
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
Found at i:22286362 original size:9 final size:9
Alignment explanation
Indices: 22286348--22286631 Score: 72
Period size: 9 Copynumber: 30.7 Consensus size: 9
22286338 TCCCATCAAC
22286348 AACTTACAT
1 AACTTACAT
22286357 AACTTACAT
1 AACTTACAT
22286366 AA--TACAT
1 AACTTACAT
*
22286373 AAATATATATCAT
1 -AA-CT-TA-CAT
22286386 ATA-TTACAT
1 A-ACTTACAT
*
22286395 AAATTACAT
1 AACTTACAT
** * *
22286404 AAGATAAAC
1 AACTTACAT
22286413 AACTTACAT
1 AACTTACAT
*
22286422 AATTTACAT
1 AACTTACAT
*
22286431 AACTTACGT
1 AACTTACAT
22286440 AAC--ACAT
1 AACTTACAT
* *
22286447 AAGTATATATT
1 AACT-TACA-T
*
22286458 ATATCGTACAT
1 A-A-CTTACAT
**
22286469 AGTTTACAT
1 AACTTACAT
22286478 AA-TT-CGGAT
1 AACTTAC--AT
22286487 AACTTACAT
1 AACTTACAT
*
22286496 AATTTACAT
1 AACTTACAT
22286505 AACTTACAT
1 AACTTACAT
22286514 ATA-TAATACAT
1 A-ACT--TACAT
*
22286525 AAATATATATCAT
1 -AA-CT-TA-CAT
* *
22286538 ATCGTACAT
1 AACTTACAT
*
22286547 AATTTACAT
1 AACTTACAT
22286556 AA-TT-CGGAT
1 AACTTAC--AT
*
22286565 AACTTACAC
1 AACTTACAT
*
22286574 AATTTACAT
1 AACTTACAT
22286583 AACTTACAT
1 AACTTACAT
22286592 AA--TACAT
1 AACTTACAT
* *
22286599 AA-ATATAT
1 AACTTACAT
* *
22286607 ATCATATCAT
1 AACTTA-CAT
22286617 AACTTACAT
1 AACTTACAT
22286626 AACTTA
1 AACTTA
22286632 ATTATACTTA
Statistics
Matches: 205, Mismatches: 38, Indels: 64
0.67 0.12 0.21
Matches are distributed among these distances:
7 19 0.09
8 12 0.06
9 124 0.60
10 17 0.08
11 13 0.06
12 12 0.06
13 8 0.04
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (9 bp):
AACTTACAT
Found at i:22286545 original size:78 final size:74
Alignment explanation
Indices: 22286351--22286614 Score: 359
Period size: 74 Copynumber: 3.5 Consensus size: 74
22286341 CATCAACAAC
** * * ** *
22286351 TTACATAACTTACATAATACATAAATATATATCATATATTACATAAATTACATAAGAT-AAACAA
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAA-TTCGGATAA
22286415 CTTACATAAT
65 CTTACATAAT
* * * * *
22286425 TTACATAACTTACGTAACACATAAGTATATATTATATCGTACATAGTTTACATAATTCGGATAAC
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
22286490 TTACATAAT
66 TTACATAAT
22286499 TTACATAACTTACATATATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGA
1 TTACATAACTTAC----ATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGA
*
22286564 TAACTTACACAAT
62 TAACTTACATAAT
22286577 TTACATAACTTACATAATACATAAATATATATCATATC
1 TTACATAACTTACATAATACATAAATATATATCATATC
22286615 ATAACTTACA
Statistics
Matches: 167, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
73 1 0.01
74 98 0.59
78 68 0.41
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.36
Consensus pattern (74 bp):
TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
TTACATAAT
Found at i:22291988 original size:13 final size:13
Alignment explanation
Indices: 22291967--22292007 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
22291957 CTGCCAAAGG
*
22291967 GACATGACCGTGT
1 GACACGACCGTGT
22291980 GACACGACCGTGT
1 GACACGACCGTGT
* *
22291993 CACACGTCCGTGT
1 GACACGACCGTGT
22292006 GA
1 GA
22292008 GAAAGCCCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:22293179 original size:41 final size:42
Alignment explanation
Indices: 22293129--22293245 Score: 157
Period size: 41 Copynumber: 2.8 Consensus size: 42
22293119 CTTAATTTTT
*
22293129 CCTTAAATTGCACATATGTGCCCCTATTTGTACTTT-GATAC
1 CCTTGAATTGCACATATGTGCCCCTATTTGTACTTTCGATAC
*
22293170 CCTTGAATTGCACATACGTGCCCCTATTTGTA-TTTCGATAC
1 CCTTGAATTGCACATATGTGCCCCTATTTGTACTTTCGATAC
* * * * *
22293211 CCCTGAATTGCACAAATTTGCCCTTGTTTGTACTT
1 CCTTGAATTGCACATATGTGCCCCTATTTGTACTT
22293246 CAGTACCCCT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 3 0.05
41 61 0.92
42 2 0.03
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (42 bp):
CCTTGAATTGCACATATGTGCCCCTATTTGTACTTTCGATAC
Found at i:22293253 original size:41 final size:41
Alignment explanation
Indices: 22293134--22293274 Score: 149
Period size: 41 Copynumber: 3.4 Consensus size: 41
22293124 TTTTTCCTTA
* * *
22293134 AATTGCACATATGTGCCCCTATTTGTACTTTGATACCCTTG
1 AATTGCACATACGTGCCCCTATTTGTACTTCGATACCCCTG
*
22293175 AATTGCACATACGTGCCCCTATTTGTATTTCGATACCCCTG
1 AATTGCACATACGTGCCCCTATTTGTACTTCGATACCCCTG
* ** * * *
22293216 AATTGCACAAATTTGCCCTTGTTTGTACTTC-AGTACCCCTT
1 AATTGCACATACGTGCCCCTATTTGTACTTCGA-TACCCCTG
* * *
22293257 AATAGCACCTACTTGCCC
1 AATTGCACATACGTGCCC
22293275 TTGTTTACAC
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 1 0.01
41 83 0.99
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.35
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTATTTGTACTTCGATACCCCTG
Found at i:22294187 original size:23 final size:24
Alignment explanation
Indices: 22294126--22294188 Score: 58
Period size: 23 Copynumber: 2.6 Consensus size: 24
22294116 TACTCATTCG
* *
22294126 AATATATATATACATATCAATACAAA
1 AATATATAT-TA-AAATCAATAAAAA
* *
22294152 AAT-TTTATAAAAATC-ATAAAAA
1 AATATATATTAAAATCAATAAAAA
22294174 AATATATATTAAAAT
1 AATATATATTAAAAT
22294189 AGCTCCAACC
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
22 9 0.30
23 13 0.43
24 1 0.03
25 4 0.13
26 3 0.10
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
AATATATATTAAAATCAATAAAAA
Found at i:22295204 original size:25 final size:25
Alignment explanation
Indices: 22295170--22295229 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
22295160 CTGCTAGGTA
22295170 ATAAA-CCTGAT-TCAATACACCAGC
1 ATAAAGCCTGATATC-ATACACCAGC
**
22295194 ATAAAGCCTGATATCATACACTGGC
1 ATAAAGCCTGATATCATACACCAGC
22295219 ATCAAAGCCTG
1 AT-AAAGCCTG
22295230 CTAGGAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 16 0.52
26 10 0.32
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.22
Consensus pattern (25 bp):
ATAAAGCCTGATATCATACACCAGC
Found at i:22295256 original size:42 final size:42
Alignment explanation
Indices: 22295197--22295298 Score: 163
Period size: 42 Copynumber: 2.5 Consensus size: 42
22295187 CACCAGCATA
*
22295197 AAGCCTGATATCATACACTGGCATCAAAGCCTGCTAGGAAAT
1 AAGCCTGATATCATACACTGGCATCAAAACCTGCTAGGAAAT
* *
22295239 AAGCCTGATATCATACACCGGCATCAAAACCTGCTAGGCAAT
1 AAGCCTGATATCATACACTGGCATCAAAACCTGCTAGGAAAT
22295281 AAGCCTGATAT-AT-CACTG
1 AAGCCTGATATCATACACTG
22295299 TTTCAAAGTT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
40 4 0.07
41 2 0.04
42 50 0.89
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (42 bp):
AAGCCTGATATCATACACTGGCATCAAAACCTGCTAGGAAAT
Found at i:22298122 original size:25 final size:25
Alignment explanation
Indices: 22298088--22298147 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
22298078 CTGCTAGGTA
22298088 ATAAA-CCTGAT-TCAATACACC-GAC
1 ATAAAGCCTGATATC-ATACACCAG-C
22298112 ATAAAGCCTGATATCATACACCAGC
1 ATAAAGCCTGATATCATACACCAGC
22298137 ATCAAAGCCTG
1 AT-AAAGCCTG
22298148 CTAGGCAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.16
25 16 0.50
26 11 0.34
ACGTcount: A:0.40, C:0.28, G:0.12, T:0.20
Consensus pattern (25 bp):
ATAAAGCCTGATATCATACACCAGC
Found at i:22298882 original size:15 final size:15
Alignment explanation
Indices: 22298859--22298888 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22298849 TCAAAAACTC
22298859 TAATACAAAACATAT
1 TAATACAAAACATAT
*
22298874 TAATCCAAAACATAT
1 TAATACAAAACATAT
22298889 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:22299913 original size:21 final size:21
Alignment explanation
Indices: 22299875--22299914 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
22299865 GATATTGAAT
* * *
22299875 TAGTAGTGTATGTTTTTAGTG
1 TAGTAGTGCATATGTTTAGTG
22299896 TAGTAGTGCATATGTTTAG
1 TAGTAGTGCATATGTTTAG
22299915 GTAAGGTTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.03, G:0.28, T:0.47
Consensus pattern (21 bp):
TAGTAGTGCATATGTTTAGTG
Found at i:22306693 original size:6 final size:6
Alignment explanation
Indices: 22306684--22306716 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
22306674 AATAAAATTG
*
22306684 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
22306717 GATAGGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:22326603 original size:23 final size:23
Alignment explanation
Indices: 22326577--22326639 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
22326567 AGCTCTATTG
**
22326577 AGCTGAAACTGTAAG-TTTTATCA
1 AGCTGAAACTGTAAGCTCATA-CA
* *
22326600 AGCTG-AACAGTAAGCTCATACG
1 AGCTGAAACTGTAAGCTCATACA
22326622 AGCTGAAACTGTAAGCTC
1 AGCTGAAACTGTAAGCTC
22326640 CAATGAGTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 14 0.42
23 19 0.58
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (23 bp):
AGCTGAAACTGTAAGCTCATACA
Found at i:22326695 original size:26 final size:24
Alignment explanation
Indices: 22326600--22326699 Score: 82
Period size: 23 Copynumber: 4.2 Consensus size: 24
22326590 AGTTTTATCA
*
22326600 AGCTG-AA-CAGTAAGCTCATACG
1 AGCTGAAATCAGTAAGCTCAAACG
* * *
22326622 AGCTGAAA-CTGTAAGCTCCAATG
1 AGCTGAAATCAGTAAGCTCAAACG
* **
22326645 AGTTGAAAAT-AGTAAGCTCTTACG
1 AGCTG-AAATCAGTAAGCTCAAACG
22326669 AGCTGATATATCAGTAAGCTCAAACG
1 AGCTGA-A-ATCAGTAAGCTCAAACG
22326695 AGCTG
1 AGCTG
22326700 TGGTGAGTCC
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
22 5 0.08
23 18 0.30
24 18 0.30
25 2 0.03
26 17 0.28
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (24 bp):
AGCTGAAATCAGTAAGCTCAAACG
Found at i:22344994 original size:25 final size:25
Alignment explanation
Indices: 22344958--22345033 Score: 70
Period size: 25 Copynumber: 3.1 Consensus size: 25
22344948 TATCATTTAT
*
22344958 GCTCT-TTCGAGC-CATGATCAGTAA
1 GCTCTATT-GAGCTCATGAACAGTAA
* *
22344982 GCTCCTCTTGAGCTGATGAACAGTAA
1 GCT-CTATTGAGCTCATGAACAGTAA
*
22345008 GCTCTATTGAGCT-A-AAACAGTAA
1 GCTCTATTGAGCTCATGAACAGTAA
22345031 GCT
1 GCT
22345034 TTATCAAGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
23 11 0.24
24 4 0.09
25 15 0.33
26 15 0.33
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (25 bp):
GCTCTATTGAGCTCATGAACAGTAA
Found at i:22345005 original size:26 final size:24
Alignment explanation
Indices: 22344958--22345056 Score: 80
Period size: 23 Copynumber: 4.2 Consensus size: 24
22344948 TATCATTTAT
* *
22344958 GCTCT-TTCGAGCCATGATCAGTAA
1 GCTCTATT-GAGCTATGAACAGTAA
*
22344982 GCTCCTCTTGAGCTGATGAACAGTAA
1 GCT-CTATTGAGCT-ATGAACAGTAA
*
22345008 GCTCTATTGAGCTA-AAACAGTAA
1 GCTCTATTGAGCTATGAACAGTAA
* **
22345031 GCTTTATCAAGC--TGAACAGTAA
1 GCTCTATTGAGCTATGAACAGTAA
22345053 GCTC
1 GCTC
22345057 ATACGAGCTG
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
22 11 0.18
23 17 0.27
24 4 0.06
25 15 0.24
26 15 0.24
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (24 bp):
GCTCTATTGAGCTATGAACAGTAA
Found at i:22345129 original size:26 final size:24
Alignment explanation
Indices: 22344976--22345129 Score: 86
Period size: 23 Copynumber: 6.4 Consensus size: 24
22344966 GAGCCATGAT
** *
22344976 CAGTAAGCTCCTCTTGAGCTGATGAA
1 CAGTAAGCTCC-AATGAGCTGA-AAA
* *
22345002 CAGTAAGCTCTATTGAGCT-AAAA
1 CAGTAAGCTCCAATGAGCTGAAAA
** *
22345025 CAGTAAGCT-TTATCAAGCTG--AA
1 CAGTAAGCTCCAAT-GAGCTGAAAA
*
22345047 CAGTAAGCT-CATACGAGCTG-AAA
1 CAGTAAGCTCCA-ATGAGCTGAAAA
**
22345070 TGGTAAGCTCCAATGAGCTGAAAA
1 CAGTAAGCTCCAATGAGCTGAAAA
** *
22345094 CAGTAAGCTCTTATGAGTTGAAATA
1 CAGTAAGCTCCAATGAGCTGAAA-A
22345119 TCAGTAAGCTC
1 -CAGTAAGCTC
22345130 AAACGATCTA
Statistics
Matches: 102, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
22 18 0.18
23 32 0.31
24 24 0.24
25 8 0.08
26 20 0.20
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (24 bp):
CAGTAAGCTCCAATGAGCTGAAAA
Found at i:22348784 original size:20 final size:20
Alignment explanation
Indices: 22348746--22348789 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
22348736 TTCTTCTTTC
* *
22348746 TTTTGTTCTTATTTGTTCT-
1 TTTTCTTCTTATTTCTTCTG
22348765 TTTTCTTCTTGATTTCTTCTG
1 TTTTCTTCTT-ATTTCTTCTG
22348786 TTTT
1 TTTT
22348790 TGTGCTCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
20 8 0.38
21 4 0.19
ACGTcount: A:0.05, C:0.14, G:0.09, T:0.73
Consensus pattern (20 bp):
TTTTCTTCTTATTTCTTCTG
Found at i:22354552 original size:48 final size:47
Alignment explanation
Indices: 22354485--22354706 Score: 206
Period size: 45 Copynumber: 4.8 Consensus size: 47
22354475 TTACCAATGT
* * *
22354485 CATGTCCCAGTCATGGTCTTACACTAGCTCACATGTCGAGG-TCGATGT
1 CATGT-CCAGACATGGTCTTACACTAGCTCACATGTCAAGGCT-GATGC
** * * *
22354533 CATGTCCCAGACATGGTCTTACACTAGCTTTCGTCTCAAGGCTGAGGC
1 CATGT-CCAGACATGGTCTTACACTAGCTCACATGTCAAGGCTGATGC
* ** *
22354581 CATGTCCA-ACATGGTCTTACACTGGCTCACAAT-T-AACACCGATGC
1 CATGTCCAGACATGGTCTTACACTAGCTCAC-ATGTCAAGGCTGATGC
* * *
22354626 CATGTGCA-ACATGGTCTTACACTAGCTCACA-ATCAATGCTGATGC
1 CATGTCCAGACATGGTCTTACACTAGCTCACATGTCAAGGCTGATGC
* *
22354671 CATGTCTAG-CATGGTCTTACACTGGCTCACATGTCA
1 CATGTCCAGACATGGTCTTACACTAGCTCACATGTCA
22354707 CCGAAATGTC
Statistics
Matches: 143, Mismatches: 25, Indels: 14
0.79 0.14 0.08
Matches are distributed among these distances:
44 2 0.01
45 70 0.49
46 23 0.16
47 4 0.03
48 43 0.30
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (47 bp):
CATGTCCAGACATGGTCTTACACTAGCTCACATGTCAAGGCTGATGC
Found at i:22357648 original size:46 final size:45
Alignment explanation
Indices: 22357570--22357744 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
22357560 TGTAACCCGC
* * *
22357570 CCATAAGCGAACTCGGACTCAACTCAAAGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
22357616 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
22357662 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
22357709 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
22357745 ATGCCCAAAC
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 64 0.60
47 32 0.30
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:22357736 original size:93 final size:93
Alignment explanation
Indices: 22357577--22357749 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
22357567 CGCCCATAAG
* *
22357577 CGAACTCGGACTCAACTCAAAGAGCTCAGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAAAGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
22357642 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * *
22357670 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAAAGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
22357734 AACGAGTTCGGATGCC
65 AACGAGCTCGGATGCC
22357750 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAAAGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:22357764 original size:46 final size:46
Alignment explanation
Indices: 22357621--22357764 Score: 152
Period size: 46 Copynumber: 3.1 Consensus size: 46
22357611 CGCATCCATG
*
22357621 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * *
22357670 --CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
22357713 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
22357760 AGTGA
1 AGTGA
22357765 CATGTCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 34 0.44
47 29 0.37
48 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:22363890 original size:48 final size:48
Alignment explanation
Indices: 22363817--22363993 Score: 177
Period size: 45 Copynumber: 3.8 Consensus size: 48
22363807 GTGAATTGAT
* ** *
22363817 GATGCCATGTCCC-GACATGGTCTTACACTGGCTCACATGTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAACGCC
* * *
22363864 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAACGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAACGCC
* * * *
22363912 AATGCCATGT-CCA-ACATTGTCTTACACTGGCTCACA-ATCAACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAACGCC
* * * *
22363957 GATGCCATAT-CCA-ACGTGGTCTTACATTGACTCACAT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
22363994 GTCACCCAAA
Statistics
Matches: 108, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
45 37 0.34
46 19 0.18
47 16 0.15
48 36 0.33
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAACGCC
Found at i:22365318 original size:16 final size:18
Alignment explanation
Indices: 22365287--22365321 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
22365277 CGCCCTCTAC
22365287 TTCCTATAATATAAATTA
1 TTCCTATAATATAAATTA
22365305 TTCCTA-AA-ATAAATTA
1 TTCCTATAATATAAATTA
22365321 T
1 T
22365322 CTCATAATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 2 0.12
18 6 0.35
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (18 bp):
TTCCTATAATATAAATTA
Found at i:22376610 original size:15 final size:15
Alignment explanation
Indices: 22376558--22376631 Score: 62
Period size: 15 Copynumber: 5.0 Consensus size: 15
22376548 TATCGTATCT
*
22376558 TGGGTTTCTTTATCC
1 TGGGTTTCTTTATTC
* * *
22376573 CGGATCTCTTTATTC
1 TGGGTTTCTTTATTC
*
22376588 T-GGATTCTTTATTC
1 TGGGTTTCTTTATTC
*
22376602 TGGGTTTCTCTA-TC
1 TGGGTTTCTTTATTC
*
22376616 TTGGATTTCTTTATTC
1 -TGGGTTTCTTTATTC
22376632 GTTTTTCTTA
Statistics
Matches: 44, Mismatches: 12, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
14 13 0.30
15 29 0.66
16 2 0.05
ACGTcount: A:0.11, C:0.19, G:0.16, T:0.54
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:22378652 original size:92 final size:91
Alignment explanation
Indices: 22378496--22378663 Score: 246
Period size: 92 Copynumber: 1.8 Consensus size: 91
22378486 ATATTTGGGT
* * * *
22378496 ATCCGAACTTGTTGAGTTGATCCGAGATCACTTATGGATGCGAATGTCAGAACTCGTTGAGTTGA
1 ATCCGAACTCGTTGAGTTGATCCAAGATCACTTATGGATGCGAACGCCAGAACTCGTTGAGTTGA
22378561 GTCCGAGTTCAAGAATGTAACTAGGC
66 GTCCGAGTTCAAGAATGTAACTAGGC
* * * * *
22378587 ATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGA-TCCAAGATCACTTATGGATGCGAACGCCAGAACTCGTTGAGTTG
22378652 AGTCCGAGTTCA
65 AGTCCGAGTTCA
22378664 CTTATGGGCG
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
91 18 0.27
92 49 0.73
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (91 bp):
ATCCGAACTCGTTGAGTTGATCCAAGATCACTTATGGATGCGAACGCCAGAACTCGTTGAGTTGA
GTCCGAGTTCAAGAATGTAACTAGGC
Found at i:22378664 original size:46 final size:46
Alignment explanation
Indices: 22378506--22378670 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
22378496 ATCCGAACTT
* * * * * *
22378506 GTTGAGTTGA-TCCGAGATCACTTATGGATGCGAATGTCAGAACTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTC
*
22378551 GTTGAGTTGAGTCCGAGTTCA---A-GAATGT-AACTAGGCATCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---GC--CCGAGCTC
*
22378597 GTTGAGTTGAGTCCAAGTTCACTTATGGATGTGAACGCCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTC
22378643 GTTGAGTTGAGTCCGAGTTCACTTATGG
1 GTTGAGTTGAGTCCGAGTTCACTTATGG
22378671 GCGGGTTACA
Statistics
Matches: 99, Mismatches: 10, Indels: 21
0.76 0.08 0.16
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 1 0.01
44 1 0.01
45 10 0.10
46 70 0.71
48 2 0.02
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (46 bp):
GTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTC
Found at i:22381615 original size:15 final size:15
Alignment explanation
Indices: 22381576--22381646 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
22381566 GTATCTTGGG
* *
22381576 TTTCTTTATCCCGGA
1 TTTCTTTATTCTGGA
*
22381591 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
22381606 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
22381621 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
22381636 TTTCTTTATTC
1 TTTCTTTATTC
22381647 GTTTTTCTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
14 2 0.04
15 42 0.91
16 2 0.04
ACGTcount: A:0.11, C:0.20, G:0.13, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:22381636 original size:30 final size:30
Alignment explanation
Indices: 22381567--22381646 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
22381557 CATAATATCG
* * *
22381567 TATCTTGGGTTTCTTTATCCCGGATCTCTT
1 TATCTTGGATTTCTTTATTCCGGATCTCTC
* * *
22381597 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATCTCTC
22381627 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
22381647 GTTTTTCTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 1 0.02
30 40 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.19, G:0.15, T:0.55
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATCTCTC
Done.