Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 75 of 333
Found at i:23064715 original size:12 final size:12
Alignment explanation
Indices: 23064700--23064730 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
23064690 TTCTCTTTTA
23064700 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
23064712 TTTTTCTTTCTC
1 TTTTTCTTTCCC
23064724 TTTTTCT
1 TTTTTCT
23064731 CCCATGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:23065127 original size:15 final size:14
Alignment explanation
Indices: 23065109--23065139 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
23065099 TTAATTTATT
23065109 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
23065124 TAATAATAATCTAA
1 TAATAATAATCTAA
23065138 TA
1 TA
23065140 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:23065150 original size:21 final size:20
Alignment explanation
Indices: 23065126--23065194 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
23065116 AATGCTAATA
23065126 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
23065147 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
23065166 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
23065187 ATAATAAT
1 ATAATAAT
23065195 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:23072685 original size:530 final size:529
Alignment explanation
Indices: 23071666--23072727 Score: 1962
Period size: 530 Copynumber: 2.0 Consensus size: 529
23071656 ATAGTGTTAA
*
23071666 ATGGCCATGGATTATAAATAGGGGTATTTAAAGTGCAAATAGACCATAGGATGGTGCTTGACCAA
1 ATGGCCATGGATTATAAATAGGGGTATTTAAAGTGAAAATAGACCATAGGATGGTGCTTGACCAA
23071731 CCATGAGACAAGGAAATTAAAATAGTCAAATGTTAGGTGAAGTTTGGTGACTTATTTGGACAAAA
66 CCATGAGACAAGGAAATTAAAATAGTCAAATGTTAGGTGAAGTTTGGTGACTTATTTGGACAAAA
*
23071796 AGAAAATAAAAGAAAAGAAAGATGATATCATCCCTTTTTCATCTTCTTCTCCACCGAAAAACACT
131 AGAAAATAAAAGAAAAGAAAGATGATATCATCACTTTTTCATCTTCTTCTCCACCGAAAAACACT
*
23071861 AGCAAAATAGAGGTTTGAAAGCTTAAAAATTTCAGCAGCTTGTAACCGTCACAAATCAAGAAATA
196 AGCAAAATAGAGGTTTGAAAGCTTAAAAATTTCAGCAGCTTGTAACCCTCACAAATCAAGAAATA
23071926 CAAAATCCGAACCTAGATTGAGGGAAGGCCAAGCAAGTAGATTAAATCGTCTAGTCGCCTACATT
261 CAAAATCCGAACCTAGATTGAGGGAAGGCCAAGCAAGTAGATTAAATCGTCTAGTCGCCTACATT
* *
23071991 TTGTAATCCGAGGTAAGTTGTATTTTAATAGTGTAACTATATTGCTATGATGTATGATTGAATTG
326 TTGTAATCCGAGGTAAGTTGTATGTTAATAGTGCAACTATATTGCTATGATGTATGATTGAATTG
* *
23072056 ATATTGCATGAATTGTTGGATTGTGATTATGAGAATGCATGTCGAGAAATTAATGTAGTAAAGAC
391 ATATTGCATGAATTGTTGGATTATGATTATGAGAATGCATGTCGAGAAATTAATGTAATAAAGAC
23072121 TTCCGATTGAACATTTGGAATAGACTTGGATATTCGTACCATGACATTGAGTGGTATGTGAGCCA
456 TTCCGATTGAACATTTGGAATAGACTTGGATATTCGTACCATGACATTGAGTGGTATGTGAGCCA
23072186 GTGTAAAAC
521 GTGTAAAAC
* * *
23072195 ATGGCCATGGATTATAAAGTAGGGGTATTTAAAGTGAAAATAGACCCTAGGATGGTGCTTGGCCG
1 ATGGCCATGGATTATAAA-TAGGGGTATTTAAAGTGAAAATAGACCATAGGATGGTGCTTGACCA
* *
23072260 GCCATGAGACAAGGAAATTAAAATAGTCAAATGTTAGGTGAAGTTTGGTGACTTATTTGGCCAAA
65 ACCATGAGACAAGGAAATTAAAATAGTCAAATGTTAGGTGAAGTTTGGTGACTTATTTGGACAAA
*
23072325 AAGAAAATAAAAGAAAAGAAAGATGTTATCATCACTTTTTCATCTTCTTCTCCACCGAAAAACAC
130 AAGAAAATAAAAGAAAAGAAAGATGATATCATCACTTTTTCATCTTCTTCTCCACCGAAAAACAC
*
23072390 TAGCAAAATAGAGGTTTGAAAGCTTGAAAATTTCAGCAGCTTGTAACCCTCACAAATCAAGAAAT
195 TAGCAAAATAGAGGTTTGAAAGCTTAAAAATTTCAGCAGCTTGTAACCCTCACAAATCAAGAAAT
*
23072455 ACAAAATCCGAACCTAGATTGAGGGAAGGCCAAGTAAGTAGATTAAATCGTCTAGTCGCCTACAT
260 ACAAAATCCGAACCTAGATTGAGGGAAGGCCAAGCAAGTAGATTAAATCGTCTAGTCGCCTACAT
23072520 TTTGTAATCCGAGGTAAGTTGTATGTTAATAGTGCAACTATATTGCTATGATGTATGATTGAATT
325 TTTGTAATCCGAGGTAAGTTGTATGTTAATAGTGCAACTATATTGCTATGATGTATGATTGAATT
23072585 GATATTGCATGAATTGTTGGATTATGATTATGAGAATGCATGTCGAGAAATTAATGTAATAAAGA
390 GATATTGCATGAATTGTTGGATTATGATTATGAGAATGCATGTCGAGAAATTAATGTAATAAAGA
* *
23072650 CTTCCGGTTGAACATTTGGAATAGACTTGGATATTCGTACCATGACATTGGGTGGTATGTGAGCC
455 CTTCCGATTGAACATTTGGAATAGACTTGGATATTCGTACCATGACATTGAGTGGTATGTGAGCC
23072715 AGTGTAAAAC
520 AGTGTAAAAC
23072725 ATG
1 ATG
23072728 TCTGAGACAT
Statistics
Matches: 515, Mismatches: 17, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
529 18 0.03
530 497 0.97
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.29
Consensus pattern (529 bp):
ATGGCCATGGATTATAAATAGGGGTATTTAAAGTGAAAATAGACCATAGGATGGTGCTTGACCAA
CCATGAGACAAGGAAATTAAAATAGTCAAATGTTAGGTGAAGTTTGGTGACTTATTTGGACAAAA
AGAAAATAAAAGAAAAGAAAGATGATATCATCACTTTTTCATCTTCTTCTCCACCGAAAAACACT
AGCAAAATAGAGGTTTGAAAGCTTAAAAATTTCAGCAGCTTGTAACCCTCACAAATCAAGAAATA
CAAAATCCGAACCTAGATTGAGGGAAGGCCAAGCAAGTAGATTAAATCGTCTAGTCGCCTACATT
TTGTAATCCGAGGTAAGTTGTATGTTAATAGTGCAACTATATTGCTATGATGTATGATTGAATTG
ATATTGCATGAATTGTTGGATTATGATTATGAGAATGCATGTCGAGAAATTAATGTAATAAAGAC
TTCCGATTGAACATTTGGAATAGACTTGGATATTCGTACCATGACATTGAGTGGTATGTGAGCCA
GTGTAAAAC
Found at i:23072777 original size:46 final size:44
Alignment explanation
Indices: 23072705--23072834 Score: 136
Period size: 46 Copynumber: 2.9 Consensus size: 44
23072695 CATTGGGTGG
* * *
23072705 TATGTGAGCCAGTGTAAAACATGTCTGAGACATGCATCGGCCATAT
1 TATGAGAGCCAGTGTAAGACATGTCTGAGACATGCATC-GACAT-T
* *
23072751 TATGAGAGCCAGTGTAAGAGATGTCTGGGACATGCATCGACATT
1 TATGAGAGCCAGTGTAAGACATGTCTGAGACATGCATCGACATT
* * *
23072795 TAGACGAGAGTCAGTGTAAGATATGTCT-AGGACATGCATC
1 T--ATGAGAGCCAGTGTAAGACATGTCTGA-GACATGCATC
23072835 AACCTCGAGA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
44 2 0.03
45 4 0.06
46 66 0.92
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (44 bp):
TATGAGAGCCAGTGTAAGACATGTCTGAGACATGCATCGACATT
Found at i:23074555 original size:14 final size:14
Alignment explanation
Indices: 23074536--23074566 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
23074526 TGTTACACCT
23074536 TCTCCCCTTTCCCC
1 TCTCCCCTTTCCCC
23074550 TCTCCCCTTTCCCC
1 TCTCCCCTTTCCCC
23074564 TCT
1 TCT
23074567 TTCTTGTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (14 bp):
TCTCCCCTTTCCCC
Found at i:23074855 original size:8 final size:8
Alignment explanation
Indices: 23074842--23074878 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
23074832 TTCTTATTAA
23074842 TATTTTTT
1 TATTTTTT
*
23074850 TATTTTTA
1 TATTTTTT
23074858 TATTTTCTT
1 TATTTT-TT
23074867 TATTTTTT
1 TATTTTTT
23074875 TATT
1 TATT
23074879 CTTAGTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
8 19 0.73
9 7 0.27
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (8 bp):
TATTTTTT
Found at i:23074868 original size:17 final size:16
Alignment explanation
Indices: 23074808--23074878 Score: 61
Period size: 17 Copynumber: 4.1 Consensus size: 16
23074798 TCCTCTGTTC
23074808 TTTTTTATTTTTATTTCAT
1 TTTTTTATTTTTA--T-AT
* *
23074827 ATTTTTTCTTATTAATAT
1 -TTTTTTATT-TTTATAT
23074845 TTTTTTATTTTTATAT
1 TTTTTTATTTTTATAT
*
23074861 TTTCTTTATTTTTTTAT
1 TTT-TTTATTTTTATAT
23074878 T
1 T
23074879 CTTAGTTTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
16 9 0.20
17 21 0.48
18 2 0.05
19 1 0.02
20 8 0.18
21 3 0.07
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTATTTTTATAT
Found at i:23077807 original size:23 final size:23
Alignment explanation
Indices: 23077781--23077828 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
23077771 GAATTATATG
*
23077781 ATAAATACTTGTTCTTATTTTTA
1 ATAAATACTTGTTCTTATTCTTA
23077804 ATAAATACTTGTTCTTATTCTTA
1 ATAAATACTTGTTCTTATTCTTA
23077827 AT
1 AT
23077829 TGTAAGTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.54
Consensus pattern (23 bp):
ATAAATACTTGTTCTTATTCTTA
Found at i:23081572 original size:45 final size:45
Alignment explanation
Indices: 23081474--23081645 Score: 214
Period size: 45 Copynumber: 3.9 Consensus size: 45
23081464 CTGAATTCAT
* * *
23081474 TCACCGGCATT-TCA-CCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTAT-AGCCTTCTAGGCTCAAAGGCCCGAATAGT-ATC
23081516 TCACCGGCATTATAGCCTTCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTTCTAGGCTC-AAAGGCCCGAATAGTATC
* *
23081561 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTTCTAGGCTCAAAGGCCCGAATAGTATC
23081606 TCACCGGCATTATAG-CTTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTT-CTAGGCTCAAAGGCCCGAATA
23081646 ATACTGTGCG
Statistics
Matches: 116, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
42 12 0.10
43 12 0.10
44 12 0.10
45 79 0.68
46 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTTCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:23082512 original size:47 final size:46
Alignment explanation
Indices: 23082454--23082594 Score: 212
Period size: 47 Copynumber: 3.0 Consensus size: 46
23082444 AAAATTTTGT
* *
23082454 TTAAC-AAGTAACTTATCCGAAAATAATAAGGGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGAAAATATTAAGAG-AAATTTAACAAGC
*
23082500 TTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAATTTAACAAAC
1 TTAACTAAGTAACTTATCCGAAAATATTAAGAG-AAATTTAACAAGC
* *
23082547 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGAAAATATTAAGAGAAATTTAACAAGC
23082593 TT
1 TT
23082595 TAAATTCAAC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
46 18 0.21
47 69 0.79
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (46 bp):
TTAACTAAGTAACTTATCCGAAAATATTAAGAGAAATTTAACAAGC
Found at i:23085082 original size:3 final size:3
Alignment explanation
Indices: 23085074--23085156 Score: 51
Period size: 4 Copynumber: 24.3 Consensus size: 3
23085064 ATTTTCTTTA
*
23085074 ATT ATT ATT CTTT ATT ATT ATT -TCT ATT ATTT ATTT ATTT ATTT ATTT
1 ATT ATT ATT -ATT ATT ATT ATT AT-T ATT A-TT A-TT A-TT A-TT A-TT
23085122 ATTT ATTT ATTT ATTT ATT ATT ATT ATT ATT ATT A
1 A-TT A-TT A-TT A-TT ATT ATT ATT ATT ATT ATT A
23085157 CCATTTCTTT
Statistics
Matches: 74, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
2 1 0.01
3 35 0.47
4 38 0.51
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (3 bp):
ATT
Found at i:23085082 original size:16 final size:16
Alignment explanation
Indices: 23085063--23085143 Score: 66
Period size: 16 Copynumber: 5.2 Consensus size: 16
23085053 CTTGTTCCCC
*
23085063 TATTTTCTTTAATTAT
1 TATTTTCTTTATTTAT
23085079 TA--TTCTTTA-TTAT
1 TATTTTCTTTATTTAT
23085092 TA-TTTCTATTATTTAT
1 TATTTTCT-TTATTTAT
*
23085108 T-TATTTATTTATTTAT
1 TAT-TTTCTTTATTTAT
*
23085124 T-TATTTATTTATTTAT
1 TAT-TTTCTTTATTTAT
23085140 TATT
1 TATT
23085144 ATTATTATTA
Statistics
Matches: 58, Mismatches: 1, Indels: 12
0.82 0.01 0.17
Matches are distributed among these distances:
13 6 0.10
14 11 0.19
15 3 0.05
16 33 0.57
17 5 0.09
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.72
Consensus pattern (16 bp):
TATTTTCTTTATTTAT
Found at i:23085103 original size:12 final size:12
Alignment explanation
Indices: 23085070--23085155 Score: 74
Period size: 12 Copynumber: 7.2 Consensus size: 12
23085060 CCCTATTTTC
23085070 TTTA-ATTATTA
1 TTTATATTATTA
*
23085081 TTCTTTATTATTA
1 TT-TATATTATTA
*
23085094 TTTCTATTATTTA
1 TTTATATTA-TTA
23085107 TTTAT-TTATTTA
1 TTTATATTA-TTA
23085119 TTTAT-TTATTTA
1 TTTATATTA-TTA
23085131 TTTAT-TTATTA
1 TTTATATTATTA
23085142 -TTATTATTATTA
1 TTTA-TATTATTA
23085154 TT
1 TT
23085156 ACCATTTCTT
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
10 3 0.05
11 6 0.09
12 40 0.61
13 17 0.26
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:23085109 original size:4 final size:4
Alignment explanation
Indices: 23085100--23085140 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
23085090 ATTATTTCTA
23085100 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T
23085141 ATTATTATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:23085151 original size:16 final size:17
Alignment explanation
Indices: 23085074--23085156 Score: 73
Period size: 20 Copynumber: 4.6 Consensus size: 17
23085064 ATTTTCTTTA
*
23085074 ATTA-TTATTCTTTATT
1 ATTATTTATTATTTATT
23085090 ATTATTTCTATTATTTATTT
1 ATTA-TT-TATTATTTA-TT
23085110 ATTTATTTATTTATTTATTT
1 A-TTATTTA-TTATTTA-TT
23085130 ATTTATTTATTA-TTATT
1 A-TTATTTATTATTTATT
23085147 ATTA-TTATTA
1 ATTATTTATTA
23085157 CCATTTCTTT
Statistics
Matches: 60, Mismatches: 1, Indels: 13
0.81 0.01 0.18
Matches are distributed among these distances:
15 6 0.10
16 7 0.12
17 3 0.05
18 4 0.07
19 13 0.22
20 24 0.40
21 3 0.05
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (17 bp):
ATTATTTATTATTTATT
Found at i:23090571 original size:56 final size:57
Alignment explanation
Indices: 23090419--23090571 Score: 152
Period size: 57 Copynumber: 2.7 Consensus size: 57
23090409 CCATATATTG
* * *
23090419 TATAACAGGATTACCAGTCCAGGCTAAATCCTTTATATAATGTATGCTTAGAAGAGTT
1 TATATCAGGATTACCAGTCCAGGCTAAATCCTTT-TATAACGTATACTTAGAAGAGTT
* * * * *
23090477 TA-ATTAGGATTACAAGTCCAGGCTAAACCCTAATTATAACGTATAC-TCG-AG-GTAT
1 TATATCAGGATTACCAGTCCAGGCTAAATCCT-TTTATAACGTATACTTAGAAGAGT-T
* *
23090532 TATATCAGGATTACCCGTCCGGGCTAAATCCTTTCTATAA
1 TATATCAGGATTACCAGTCCAGGCTAAATCCTTT-TATAA
23090572 TAGGTCAATA
Statistics
Matches: 77, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
54 2 0.03
55 6 0.08
56 31 0.40
57 35 0.45
58 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (57 bp):
TATATCAGGATTACCAGTCCAGGCTAAATCCTTTTATAACGTATACTTAGAAGAGTT
Found at i:23092089 original size:6 final size:6
Alignment explanation
Indices: 23092074--23092160 Score: 113
Period size: 6 Copynumber: 14.5 Consensus size: 6
23092064 AGACCATTGA
* *
23092074 TTTTAG TTTTAT TTTTAT TTTTAT TTTTGT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* * *
23092122 TTTTAT TTTTAT TTTT-T CTTTTAG TGTTAG TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT -TTTTAT TTTTAT TTTTAT TTT
23092161 CTTAGACTTA
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
5 1 0.01
6 71 0.99
ACGTcount: A:0.14, C:0.01, G:0.06, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:23101414 original size:21 final size:23
Alignment explanation
Indices: 23101376--23101428 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 23
23101366 TCACAACTCT
23101376 TTTTCTTTTCTCTCTCATTTTC-
1 TTTTCTTTTCTCTCTCATTTTCA
23101398 TTTTC-TTTCT-TCTTCATTTTCA
1 TTTTCTTTTCTCTC-TCATTTTCA
*
23101420 CTTTCTTTT
1 TTTTCTTTT
23101429 TCCACTCTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 2 0.07
21 13 0.48
22 9 0.33
23 3 0.11
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.70
Consensus pattern (23 bp):
TTTTCTTTTCTCTCTCATTTTCA
Found at i:23106853 original size:43 final size:43
Alignment explanation
Indices: 23106696--23106854 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
23106686 TATGCGTTAT
* * *
23106696 CGTGTAAGACCACATCTGGGACGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACATCTGGGACATTGGCATC-AATATTTGA-TTA
* ** * * *
23106740 TGTGTAAGATGACGTCTGGGACATTGGCATC-GTATTTGATTT
1 CGTGTAAGACCACATCTGGGACATTGGCATCAATATTTGATTA
*
23106782 CGTGTAAGACC-CTATCTGGGACAGTGGCATCAATATTTGATTA
1 CGTGTAAGACCAC-ATCTGGGACATTGGCATCAATATTTGATTA
* *
23106825 CATGTAAGACCACATCTGGGACCTTGGCAT
1 CGTGTAAGACCACATCTGGGACATTGGCAT
23106855 TGTACGAGAT
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 38 0.41
44 27 0.29
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACATCTGGGACATTGGCATCAATATTTGATTA
Found at i:23110778 original size:31 final size:31
Alignment explanation
Indices: 23110740--23110801 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
23110730 CCTCGAAAAG
**
23110740 ATTCATCCTTGAATCTTGTATTTGATTGAAT
1 ATTCATCCTAAAATCTTGTATTTGATTGAAT
23110771 ATTCATCCTAAAATCTTGTATTTGATTGAAT
1 ATTCATCCTAAAATCTTGTATTTGATTGAAT
23110802 CTTGGTTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (31 bp):
ATTCATCCTAAAATCTTGTATTTGATTGAAT
Found at i:23113003 original size:11 final size:11
Alignment explanation
Indices: 23112987--23113013 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
23112977 GGGTGGCTAT
23112987 AGAAATTTGAG
1 AGAAATTTGAG
23112998 AGAAATTTGAG
1 AGAAATTTGAG
23113009 AGAAA
1 AGAAA
23113014 AAGTGAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.26, T:0.22
Consensus pattern (11 bp):
AGAAATTTGAG
Found at i:23113168 original size:12 final size:12
Alignment explanation
Indices: 23113151--23113185 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
23113141 ATTTTCATAA
23113151 TAAAATATTAAT
1 TAAAATATTAAT
*
23113163 TAAAAT-CTAAT
1 TAAAATATTAAT
23113174 TAAAATATTAAT
1 TAAAATATTAAT
23113186 ATTATAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (12 bp):
TAAAATATTAAT
Found at i:23120767 original size:27 final size:26
Alignment explanation
Indices: 23120724--23120785 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
23120714 TATTTTCTTG
*
23120724 AAATTTTACCACGGGCAAAATCATCAA
1 AAATTTTATCACGGGCAAAATCATC-A
**
23120751 AAATTTTATCA-GTGGCAAAATTGTCA
1 AAATTTTATCACG-GGCAAAATCATCA
23120777 AAATTTTAT
1 AAATTTTAT
23120786 TGGGATAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 11 0.35
27 20 0.65
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATTTTATCACGGGCAAAATCATCA
Found at i:23123504 original size:30 final size:30
Alignment explanation
Indices: 23123458--23123515 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
23123448 CTGGGCATTT
* *
23123458 CCACACAGGCTGGCCACACGGCCATGTGAG
1 CCACACAGGCTAGCCACACGCCCATGTGAG
* *
23123488 CCACACGGGCTAGCCACATGCCCATGTG
1 CCACACAGGCTAGCCACACGCCCATGTG
23123516 CCAGTCCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.22, C:0.38, G:0.28, T:0.12
Consensus pattern (30 bp):
CCACACAGGCTAGCCACACGCCCATGTGAG
Found at i:23126509 original size:26 final size:26
Alignment explanation
Indices: 23126478--23126585 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
23126468 TGAAATGCCC
*
23126478 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
23126504 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
23126530 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
23126556 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
23126582 ATCA
1 ATCA
23126586 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:23132444 original size:3 final size:3
Alignment explanation
Indices: 23132436--23132460 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
23132426 TTATTAAATT
23132436 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
23132461 CAGTAATAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:23139126 original size:26 final size:26
Alignment explanation
Indices: 23139078--23139132 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
23139068 ATCAATTTTG
*
23139078 AAATAAACAAATTGATCTGTATCTGA
1 AAATAAACAAATTGATCTGTATCTCA
23139104 AAATAAACAAATTGATC-GCTATCTCA
1 AAATAAACAAATTGATCTG-TATCTCA
23139130 AAA
1 AAA
23139133 AAATAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.27
Consensus pattern (26 bp):
AAATAAACAAATTGATCTGTATCTCA
Found at i:23139158 original size:12 final size:12
Alignment explanation
Indices: 23139137--23139184 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
23139127 TCAAAAAAAT
23139137 AAAA-AATTTTC
1 AAAATAATTTTC
23139148 AAAATAATTTTC
1 AAAATAATTTTC
23139160 --AA-AATTTT-
1 AAAATAATTTTC
*
23139168 AAAATAATTTTT
1 AAAATAATTTTC
23139180 AAAAT
1 AAAAT
23139185 TCAAAATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
9 6 0.19
10 4 0.12
11 10 0.31
12 12 0.38
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (12 bp):
AAAATAATTTTC
Found at i:23139173 original size:20 final size:21
Alignment explanation
Indices: 23139139--23139192 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
23139129 AAAAAAATAA
23139139 AAAATTTTCAAAATAATTTTC
1 AAAATTTTCAAAATAATTTTC
*
23139160 AAAATTTT-AAAATAATTTTT
1 AAAATTTTCAAAATAATTTTC
23139180 AAAA--TTCAAAATA
1 AAAATTTTCAAAATA
23139193 TTTATAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 2 0.06
19 6 0.19
20 15 0.48
21 8 0.26
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAATTTTCAAAATAATTTTC
Found at i:23139202 original size:19 final size:19
Alignment explanation
Indices: 23139145--23139210 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
23139135 ATAAAAAATT
*
23139145 TTCAAAATAATTTTCAAAAT
1 TTCAAAATAATTTT-AAAAA
* *
23139165 TTTAAAATAATTTTTAAAA
1 TTCAAAATAATTTTAAAAA
23139184 TTCAAAAT-ATTTATAAAAA
1 TTCAAAATAATTT-TAAAAA
*
23139203 TTCTAAAT
1 TTCAAAAT
23139211 TTTATATTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
18 4 0.10
19 22 0.56
20 13 0.33
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (19 bp):
TTCAAAATAATTTTAAAAA
Found at i:23139209 original size:27 final size:27
Alignment explanation
Indices: 23139157--23139209 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
23139147 CAAAATAATT
*
23139157 TTCAAAATTTTAAAATAATTTTTAAAA
1 TTCAAAATTTTAAAATAATTTCTAAAA
23139184 TTCAAAATATTTATAAA-AA-TTCTAAA
1 TTCAAAAT-TTTA-AAATAATTTCTAAA
23139210 TTTTATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 14 0.61
28 6 0.26
29 3 0.13
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (27 bp):
TTCAAAATTTTAAAATAATTTCTAAAA
Found at i:23144481 original size:22 final size:20
Alignment explanation
Indices: 23144445--23144489 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
23144435 AAATTTTTTA
* *
23144445 ATTCATCTGATATATCTATTAT
1 ATTCATCTAAAATAT-TA-TAT
23144467 ATTCATCTAAAATATTATAT
1 ATTCATCTAAAATATTATAT
23144487 ATT
1 ATT
23144490 AACAGGAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 2 0.10
22 13 0.62
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (20 bp):
ATTCATCTAAAATATTATAT
Found at i:23149297 original size:20 final size:20
Alignment explanation
Indices: 23149272--23149312 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
23149262 ATCCCAATCC
23149272 AAGG-AAATTATTTTCTAAAA
1 AAGGAAAATTATTTT-TAAAA
23149292 AAGGAAAAATTATTTTTAAAA
1 AAGG-AAAATTATTTTTAAAA
23149313 TAAATCATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 5 0.26
22 10 0.53
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34
Consensus pattern (20 bp):
AAGGAAAATTATTTTTAAAA
Found at i:23153565 original size:16 final size:16
Alignment explanation
Indices: 23153544--23153574 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23153534 AAAAATATAT
23153544 AAAATGAATAAAATAA
1 AAAATGAATAAAATAA
*
23153560 AAAATGAATAGAATA
1 AAAATGAATAAAATA
23153575 CATAATAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (16 bp):
AAAATGAATAAAATAA
Found at i:23153732 original size:16 final size:17
Alignment explanation
Indices: 23153707--23153745 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
23153697 AACAAATAAC
*
23153707 ATAAAAAAATAA-ACAA
1 ATAAATAAATAAGACAA
23153723 ATAAATAAATAAGACAA
1 ATAAATAAATAAGACAA
*
23153740 GTAAAT
1 ATAAAT
23153746 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (17 bp):
ATAAATAAATAAGACAA
Found at i:23159108 original size:19 final size:18
Alignment explanation
Indices: 23159086--23159132 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
23159076 CCGAAACAGT
*
23159086 AAAAAAAAATTGAAAAAGA
1 AAAAAAAAACTGAAAAA-A
*
23159105 AAAAAAATACTGAAAAAA
1 AAAAAAAAACTGAAAAAA
23159123 AAATAAAAAA
1 AAA-AAAAAA
23159133 GGGGTCATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.81, C:0.02, G:0.06, T:0.11
Consensus pattern (18 bp):
AAAAAAAAACTGAAAAAA
Found at i:23159303 original size:3 final size:3
Alignment explanation
Indices: 23159295--23159359 Score: 66
Period size: 3 Copynumber: 22.7 Consensus size: 3
23159285 TTCGGGAACA
* *
23159295 AAG AAG AAG AAG AAA AAG AGAG AAG AAG GA- AAG AAG -AG AAG AAG
1 AAG AAG AAG AAG AAG AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG
*
23159339 GA- AAG AAG -AG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AA
23159360 AGAAAAAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
2 6 0.12
3 42 0.82
4 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:23159320 original size:19 final size:17
Alignment explanation
Indices: 23159289--23159357 Score: 81
Period size: 16 Copynumber: 4.1 Consensus size: 17
23159279 TTCATTTTCG
23159289 GGAACAAAGA-AGAAGAA
1 GGAA-AAAGAGAGAAGAA
23159306 -GAAAAAGAGAGAAGAA
1 GGAAAAAGAGAGAAGAA
*
23159322 GGAAAGA-AGAGAAGAA
1 GGAAAAAGAGAGAAGAA
23159338 GGAAAGAAGAGAAGAAGAA
1 GGAAA-AAGAG-AGAAGAA
23159357 G
1 G
23159358 AAAGAAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
15 5 0.11
16 24 0.53
17 6 0.13
18 2 0.04
19 8 0.18
ACGTcount: A:0.64, C:0.01, G:0.35, T:0.00
Consensus pattern (17 bp):
GGAAAAAGAGAGAAGAA
Found at i:23159352 original size:8 final size:8
Alignment explanation
Indices: 23159295--23159355 Score: 60
Period size: 8 Copynumber: 7.9 Consensus size: 8
23159285 TTCGGGAACA
23159295 AAGAAGAAG
1 AAGAAG-AG
23159304 AAGAA-A-
1 AAGAAGAG
23159310 AAG-AGAG
1 AAGAAGAG
23159317 AAGAAG-G
1 AAGAAGAG
23159324 AAAGAAGAG
1 -AAGAAGAG
23159333 AAGAAG-G
1 AAGAAGAG
23159340 AAAGAAGAG
1 -AAGAAGAG
23159349 AAGAAGA
1 AAGAAGA
23159356 AGAAAGAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
5 1 0.02
6 4 0.09
7 6 0.13
8 27 0.60
9 7 0.16
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (8 bp):
AAGAAGAG
Found at i:23159370 original size:27 final size:26
Alignment explanation
Indices: 23159295--23159384 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 26
23159285 TTCGGGAACA
*
23159295 AAGAAG-AAGAAGAAAAAGAGAGAAG
1 AAGAAGAAAGAAAAAAAAGAGAGAAG
*
23159320 AAGGAAAGAAGAGAAGAAGGAAAGAAGAGAAG
1 AA-G-AAGAA-AGAA-AA-AAAAG-AGAGAAG
*
23159352 AAGAAGAAAGAAAAAAAAGGAGAGGAG
1 AAGAAGAAAGAAAAAAAA-GAGAGAAG
*
23159379 GAGAAG
1 AAGAAG
23159385 GAGGCTGGCG
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
25 2 0.04
26 1 0.02
27 17 0.33
28 4 0.08
29 8 0.15
30 6 0.12
31 5 0.10
32 9 0.17
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (26 bp):
AAGAAGAAAGAAAAAAAAGAGAGAAG
Found at i:23159456 original size:14 final size:14
Alignment explanation
Indices: 23159407--23159469 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
23159397 TGAGAGAAGA
23159407 AAAAAGAA--AAAG
1 AAAAAGAAGGAAAG
23159419 AAAAAGAGAAGGAGAAG
1 -AAAA-AGAAGGA-AAG
* * *
23159436 AAGAAGAGGGAAGG
1 AAAAAGAAGGAAAG
23159450 AAAAAGAAGGAAAG
1 AAAAAGAAGGAAAG
23159464 AAAAAG
1 AAAAAG
23159470 GTATTTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
13 4 0.10
14 23 0.57
15 6 0.15
16 4 0.10
17 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AAAAAGAAGGAAAG
Found at i:23159456 original size:17 final size:17
Alignment explanation
Indices: 23159412--23159469 Score: 50
Period size: 19 Copynumber: 3.4 Consensus size: 17
23159402 GAAGAAAAAA
*
23159412 GAAAAAGAAAAAGAGAAG
1 GAAAAAG-AAGAGAGAAG
*
23159430 GAGAAGAAGAAGAGGGAAG
1 GA-AA-AAGAAGAGAGAAG
23159449 GAAAAAGAAG-GA-AA-
1 GAAAAAGAAGAGAGAAG
23159463 GAAAAAG
1 GAAAAAG
23159470 GTATTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
14 7 0.20
15 2 0.06
16 1 0.03
17 6 0.17
18 4 0.11
19 12 0.34
20 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GAAAAAGAAGAGAGAAG
Found at i:23159824 original size:14 final size:14
Alignment explanation
Indices: 23159805--23159848 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
23159795 AAAAATAGTA
23159805 TAAAAATAAAATAT
1 TAAAAATAAAATAT
* *
23159819 TAAAAATATATTAAT
1 TAAAAATAAAAT-AT
23159834 TAAAAAATAAAATAT
1 T-AAAAATAAAATAT
23159849 GAGAAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 10 0.42
15 5 0.21
16 9 0.38
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
TAAAAATAAAATAT
Found at i:23159872 original size:17 final size:17
Alignment explanation
Indices: 23159835--23159873 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
23159825 TATATTAATT
* * *
23159835 AAAAAATAAAATATGAG
1 AAAAAATAAAAAACGAA
23159852 AAAAAATAAAAAACGAA
1 AAAAAATAAAAAACGAA
23159869 AAAAA
1 AAAAA
23159874 CTTTTTTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.79, C:0.03, G:0.08, T:0.10
Consensus pattern (17 bp):
AAAAAATAAAAAACGAA
Found at i:23160206 original size:133 final size:130
Alignment explanation
Indices: 23159968--23160212 Score: 321
Period size: 133 Copynumber: 1.9 Consensus size: 130
23159958 AACCGAAAAT
* * * **
23159968 AAAAAAATATGAACAAGGTGCCAAAGTCAGGTTATTTATTAAATTAATATAAAAAACTTAAATAA
1 AAAAAAATACGAACAAAGTGCCAAAATCAGGTTATTTATTAAAAAAATATAAAAAACTTAAATAA
* * * * *
23160033 TACATTTGAAAGATTTTATGCTAAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACG
66 TACATTTGAAACATTATATACTAAAATAAAATACAAAAATAAAATATTTTAAAAAATAATATACG
* *
23160098 AAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAA
1 AAAAAAATACGAACAAAGTGCCAAAATCA-GGTTATTTATTAAAAAAATAT-AAAAA-ACTTAAA
* *
23160163 TAATACATTTGAAACATTATGTACTAAAATAATATA-AAGAAATAAAATAT
63 TAATACATTTGAAACATTATATACTAAAATAAAATACAA-AAATAAAATAT
23160213 GAAAATAATA
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
130 24 0.25
131 19 0.20
132 6 0.06
133 48 0.49
ACGTcount: A:0.55, C:0.07, G:0.08, T:0.29
Consensus pattern (130 bp):
AAAAAAATACGAACAAAGTGCCAAAATCAGGTTATTTATTAAAAAAATATAAAAAACTTAAATAA
TACATTTGAAACATTATATACTAAAATAAAATACAAAAATAAAATATTTTAAAAAATAATATACG
Found at i:23160371 original size:297 final size:278
Alignment explanation
Indices: 23159910--23161216 Score: 1129
Period size: 297 Copynumber: 4.6 Consensus size: 278
23159900 ATTTTTTTGT
*
23159910 TAAAATAATATAAA-AAATAAAATATGAAAATAGTATATTTAAAAAAAAAACCGAAAATAAAAAA
1 TAAAATAATATAAAGAAATAAAATATGAAAATAATATATTTAAAAAAAAAACCGAAAATAAAAAA
* * * * *
23159974 ATATGAACAAGGTGCCAAAGTCAGGTTATTTATTAAATTAATATAAAAAACTTAAATAATACATT
66 ATACGAACAAAGTACCAAAATCAGGTTATTTAGTAAATTAATATAAAAAACTTAAATAATACATT
*
23160039 TGAAAGATTTTATGCTAAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAA
131 TGAAAGATTTTATGCTAAAATAAAATAACAAAATAATATATTTTAAAAAATAATATACGAAAAAA
23160104 ATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATAC
196 ATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATAC
23160169 ATTTGAAACATTATGTAC
261 ATTTGAAACATTATGTAC
23160187 TAAAATAATATAAAGAAATAAAATATGAAAATAATATATTTTAAAAAATAATATA-CGAAAATAA
1 TAAAATAATATAAAGAAATAAAATATGAAAATAATATA-TTTAAAAAA-AA-A-ACCGAAAATAA
* * *
23160251 AAAAATTACGAAGAAAGTATCAAAATCAGAGTTATTTAGTAAATTAATATAAAGAAACACTTAAG
62 AAAAA-TACGAACAAAGTACCAAAATCAG-GTTATTTAGTAAATTAATAT-AA-AAA-ACTTAAA
** * * *
23160316 TAATACATTTGAAATTTTTTTTGCTAAAATAATATAAAAATAAAATAAGAAAATAATATATTTTT
122 TAATACATTTGAAAGATTTTATGC----------T-AAAATAAAATAACAAAATAATATATTTTA
*
23160381 AAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTGAAAAAATAT
176 AAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATAT
*
23160446 AAAAAATACTTAAATAATACATTTGAAACATTATGTAC
241 AAAAAACACTTAAATAATACATTTGAAACATTATGTAC
* * * * **** *
23160484 TAAAATAATATGAAGAAATAAAATACGAAAAT-A-ATA--TGAAGAAAGTGTC-AAAATCAAGGT
1 TAAAATAATATAAAGAAATAAAATATGAAAATAATATATTTAAAAAAAAAACCGAAAAT-AA--A
* ** ** * ** * * * * * *
23160544 TATTTATTAA-ATTAGTATAAAAAAACA-CTTA--CA-T-AA-T-ATACCTAATACATTTGAAA-
63 AAAATACGAACA-AAGTA-CCAAAATCAGGTTATTTAGTAAATTAATA--TAAAAAACTT-AAAT
* ** ** *** * *
23160600 CAT-TTTTTGCTAAA-ATAATATAAAAAAATAAAATAAGAAAATAATATATTTTAAAAAACAATA
123 AATACATTTG--AAAGATTTTATGCTAAAATAAAATAACAAAATAATATATTTTAAAAAATAATA
*
23160663 TATG-AAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACT
186 TACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACT
23160727 TAAATAATACATTTGAAACATTATGTAC
251 TAAATAATACATTTGAAACATTATGTAC
** **
23160755 TAAAATAATATAAAGAAAT-AAATACAAAAATAATATATTTTTAAAAAAATTA-CG---A-AAAA
1 TAAAATAATATAAAGAAATAAAATATGAAAATAATATA--TTTAAAAAAAAAACCGAAAATAAAA
* * * * * *
23160814 ATATA--AATAAAGTGCTAAAATCAGGGTTATTTATTAAA-AAATATAAAAAAACAATTAAATAA
64 AAATACGAACAAAGTACCAAAATCA-GGTTATTTAGTAAATTAATAT-AAAAAAC--TTAAATAA
* ** *
23160876 TACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAATACGAAAATAATATATTTTAAA
125 TACATTTGAAAGATT-T-TA-T--GCTAA-A-ATA-AAAT--A-AC-AAAATAATATATTTTAAA
23160941 AAA-AAT-TACG-AAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAA
178 AAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAA
23161003 AAAACACTTAAATAATACATTTGAAACATTATGTAC
243 AAAACACTTAAATAATACATTTGAAACATTATGTAC
* * * *
23161039 TAAAATAAGGGTTTTAAA-ATAA-AATAATACGAAAGTAATATATTTTAAAAAATAAGATA-TGA
1 TAAAATAA----TATAAAGA-AATAA-AATATGAAAATAATATA-TTTAAAAAA-AA-A-ACCGA
* * *
23161101 AAATAAAAAAATACGAAAAAAGTGCCAAAATCAGTGTTATTTATTAAATTAATATAAAAAACACT
56 AAATAAAAAAATACGAACAAAGTACCAAAATCAG-GTTATTTAGTAAATTAATAT-AAAAA-ACT
** * *
23161166 TCCATAATACATTTGAAACATTTT-TGCTAAAATAATATAA-AAAATAATATA
118 TAAATAATACATTTGAAAGATTTTATGCTAAAATAAAATAACAAAATAATATA
23161217 CGAAAATATT
Statistics
Matches: 846, Mismatches: 100, Indels: 162
0.76 0.09 0.15
Matches are distributed among these distances:
266 6 0.01
267 5 0.01
268 4 0.00
269 4 0.00
270 12 0.01
271 109 0.13
272 49 0.06
273 10 0.01
274 6 0.01
275 5 0.01
276 9 0.01
277 15 0.02
278 22 0.03
279 13 0.02
280 3 0.00
281 17 0.02
282 26 0.03
283 38 0.04
284 111 0.13
285 11 0.01
286 52 0.06
287 2 0.00
288 22 0.03
289 23 0.03
290 8 0.01
291 14 0.02
292 12 0.01
293 1 0.00
294 1 0.00
295 12 0.01
296 4 0.00
297 207 0.24
298 11 0.01
299 2 0.00
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.30
Consensus pattern (278 bp):
TAAAATAATATAAAGAAATAAAATATGAAAATAATATATTTAAAAAAAAAACCGAAAATAAAAAA
ATACGAACAAAGTACCAAAATCAGGTTATTTAGTAAATTAATATAAAAAACTTAAATAATACATT
TGAAAGATTTTATGCTAAAATAAAATAACAAAATAATATATTTTAAAAAATAATATACGAAAAAA
ATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATAC
ATTTGAAACATTATGTAC
Found at i:23160504 original size:13 final size:13
Alignment explanation
Indices: 23160486--23160527 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
23160476 TTATGTACTA
23160486 AAATAATATGAAG
1 AAATAATATGAAG
* *
23160499 AAATAAAAT-ACG
1 AAATAATATGAAG
23160511 AAAATAATATGAAG
1 -AAATAATATGAAG
23160525 AAA
1 AAA
23160528 GTGTCAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
12 2 0.09
13 19 0.83
14 2 0.09
ACGTcount: A:0.67, C:0.02, G:0.12, T:0.19
Consensus pattern (13 bp):
AAATAATATGAAG
Found at i:23160629 original size:13 final size:13
Alignment explanation
Indices: 23160611--23160647 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
23160601 ATTTTTTGCT
23160611 AAAATAATATAAA
1 AAAATAATATAAA
* *
23160624 AAAATAAAATAAG
1 AAAATAATATAAA
23160637 AAAATAATATA
1 AAAATAATATA
23160648 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.22
Consensus pattern (13 bp):
AAAATAATATAAA
Found at i:23160697 original size:271 final size:280
Alignment explanation
Indices: 23160055--23161046 Score: 1176
Period size: 297 Copynumber: 3.5 Consensus size: 280
23160045 ATTTTATGCT
**
23160055 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATAAGAAAATAATATATTTTAAAAAA-AATATACG-AAAAAATACGAATAAAGTGCT
23160120 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGT
64 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGT
** *
23160185 ACTAAAATAATATAAAGAAATAAAATATGAAAATAATATATTTTAAAAAATAATATACGAAAATA
129 ACTAAAATAATATAAAGAAAT-AAATACAAAAATAATATA--TTGAAAAA-AAT-TACG---A-A
* * * * * * *
23160250 AAAAAATTACGAAGAAAGTATCAAAATCAGAGTTATTTAGTAAATTAATATAAAGAAACACTTAA
185 AAAAGA-TA--AATAAAGTCT-AAAATCAG-GTTA-TTA-TAAA-AAACATAAAAAAACAATTAA
* **
23160315 GTAATACATTTGAAATTTTTTTTGCTAAAATAATAT--A
242 ATAATACATTTGAAACATTTTTTGCTAAAATAATATAAA
*
23160352 AAAATAAAATAAGAAAATAATATATTTTTAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATAAGAAAATAATATA-TTTTAAAAAAAATATACG-AAAAAATACGAATAAAGTGCT
* *
23160417 AAAATCAGGGTTATTTATTGAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
64 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGT
* * * *
23160482 ACTAAAATAATATGAAGAAATAAAATACGAAAAT-A-ATA-TGAAGAAAGTGT-C-AAAATCAAG
129 ACTAAAATAATATAAAGAAAT-AAATACAAAAATAATATATTGAAAAAAAT-TACGAAAA--AAG
* * ** * * * * * **
23160542 GT-TATTTA-T-T-AAATTA-G-TA-TA-AAAAAACACTTACATAA-TA-TACCTAATACATTTG
190 ATAAATAAAGTCTAAAATCAGGTTATTATAAAAAACA-TAAAAAAACAATTAAATAATACATTTG
23160597 AAACATTTTTTGCTAAAATAATATAAA
254 AAACATTTTTTGCTAAAATAATATAAA
*
23160624 AAAATAAAATAAGAAAATAATATATTTTAAAAAACAATATATGAAAAAATACGAATAAAGTGCTA
1 AAAATAAAATAAGAAAATAATATATTTTAAAAAA-AATATACGAAAAAATACGAATAAAGTGCTA
23160689 AAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGTA
65 AAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGTA
* *
23160754 CTAAAATAATATAAAGAAATAAATACAAAAATAATATATTTTTAAAAAAATTACGAAAAAATATA
130 CTAAAATAATATAAAGAAATAAATACAAAAATAATATA--TTGAAAAAAATTACGAAAAAAGATA
*
23160819 AATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAATATAAAAAAACAATTAAATAATACATTTG
193 AATAAAGT-CTAAAATCA-GGTTA-TTA-TAAAAAACATAAAAAAACAATTAAATAATACATTTG
* * *
23160884 AAACATTATGTACTAAAATAATATAAA
254 AAACATTTTTTGCTAAAATAATATAAA
* *
23160911 GAAAT-AAATACGAAAATAATATATTTTAAAAAAAAT-TACGAAAAAATACGAATAAAGTGCTAA
1 AAAATAAAATAAGAAAATAATATATTTTAAAAAAAATATACGAAAAAATACGAATAAAGTGCTAA
23160974 AATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGTAC
66 AATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGTAC
23161039 TAAAATAA
131 TAAAATAA
23161047 GGGTTTTAAA
Statistics
Matches: 609, Mismatches: 58, Indels: 69
0.83 0.08 0.09
Matches are distributed among these distances:
270 46 0.08
271 117 0.19
272 42 0.07
274 6 0.01
275 11 0.02
276 7 0.01
277 1 0.00
278 1 0.00
279 10 0.02
281 2 0.00
282 3 0.00
283 2 0.00
284 101 0.17
285 11 0.02
286 37 0.06
287 43 0.07
290 1 0.00
291 3 0.00
292 5 0.01
295 3 0.00
296 1 0.00
297 147 0.24
298 9 0.01
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.29
Consensus pattern (280 bp):
AAAATAAAATAAGAAAATAATATATTTTAAAAAAAATATACGAAAAAATACGAATAAAGTGCTAA
AATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGTAC
TAAAATAATATAAAGAAATAAATACAAAAATAATATATTGAAAAAAATTACGAAAAAAGATAAAT
AAAGTCTAAAATCAGGTTATTATAAAAAACATAAAAAAACAATTAAATAATACATTTGAAACATT
TTTTGCTAAAATAATATAAA
Found at i:23160863 original size:142 final size:142
Alignment explanation
Indices: 23160586--23161224 Score: 838
Period size: 142 Copynumber: 4.4 Consensus size: 142
23160576 ATAATATACC
* * * *
23160586 TAATACATTTGAAACATTTTTTGCTAAAATAATATAAAAAAATAAAATAAGAAAATAATATATTT
1 TAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAAT-AAATACGAAAATAATATATTT
* *
23160651 TAAAAAACAATATATGAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATA
64 TAAAAAA-AATATACGAAAAAATACAAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATA
23160716 TAAAAAACACTTAAA
128 TAAAAAACACTTAAA
*
23160731 TAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAATACAAAAATAATATATTTT
1 TAATACATTTGAAACATTATGTACTAAAATAATATAAA-AAATAAATACGAAAATAATATATTTT
* *
23160796 TAAAAAAAT-TACGAAAAAATATAAATAAAGTGCTAAAATCAGGGTTATTTATT-AAAAAATATA
65 AAAAAAAATATACGAAAAAATACAAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATAT-
*
23160859 AAAAAACAATTAAA
129 AAAAAACACTTAAA
23160873 TAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAATACGAAAATAATATATTTT
1 TAATACATTTGAAACATTATGTACTAAAATAATATAAA-AAATAAATACGAAAATAATATATTTT
*
23160938 AAAAAAAAT-TACGAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATA
65 AAAAAAAATATACGAAAAAATACAAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATA
23161002 AAAAACACTTAAA
130 AAAAACACTTAAA
* * *
23161015 TAATACATTTGAAACATTATGTACTAAAATAAGGGTTTTAAAATAAAATAATACGAAAGTAATAT
1 TAATACATTTGAAACATTATGTACTAAAATAA----TATAAAA-AATA-AATACGAAAATAATAT
** * *
23161080 ATTTTAAAAAATAAGATATGAAAATAAAAAAATACGAAA-AAAGTGCCAAAATCAGTGTTATTTA
60 ATTTT-AAAAA-AA-ATAT----ACGAAAAAATAC-AAATAAAGTGCTAAAATCAGGGTTATTTA
** **
23161144 TTAAATTAATATAAAAAACACTTCCA
117 TTAAAAAAATATAAAAAACACTTAAA
* *
23161170 TAATACATTTGAAACATT-TTTGCTAAAATAATATAAAAAATAATATACGAAAATA
1 TAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAA-ATACGAAAATA
23161225 TTTTACTTAT
Statistics
Matches: 443, Mismatches: 32, Indels: 34
0.87 0.06 0.07
Matches are distributed among these distances:
141 9 0.02
142 213 0.48
143 12 0.03
144 28 0.06
145 37 0.08
146 8 0.02
147 20 0.05
148 6 0.01
149 15 0.03
150 8 0.02
151 1 0.00
154 11 0.02
155 73 0.16
156 2 0.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (142 bp):
TAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAATACGAAAATAATATATTTTA
AAAAAAATATACGAAAAAATACAAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAA
AAAACACTTAAA
Found at i:23160874 original size:413 final size:416
Alignment explanation
Indices: 23160163--23160932 Score: 1157
Period size: 413 Copynumber: 1.8 Consensus size: 416
23160153 AACACTTAAA
* *
23160163 TAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATATGAAAATAATATATTT
1 TAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATAAGAAAATAATATATTT
*
23160228 TAAAAAATAATATACGAAAATAAAAAAATTACGAAGAAAGTATCAAAATCAGAGTTATTTAGTAA
66 TAAAAAACAATAT-----AATAAAAAAATTACGAAGAAAGTATCAAAATCAGAGTTATTTAGTAA
** * ** * * *
23160293 ATTAATATAAAGAAACACTTAAGTAATACATTTGAAATTTTTTTTGCTAAAATAATATAAAAATA
126 AAAAATATAAAGAAACACTTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATA
23160358 AAATAAGAAAATAATATATTTTTAAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATC
191 AAATAAGAAAATAATATATTTTTAAAAATAATATACGAAAAAAATAC-AATAAAGTGCTAAAATC
23160423 AGGGTTATTTATTGAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGTACTAAA
255 AGGGTTATTTATTGAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGTACTAAA
*
23160488 ATAATATGAAGAAATAAAATACGAAAATAATATGAAGAAAGTGTCAAAATCAAGGTTATTTATTA
320 ATAATATAAAGAAAT-AAATACGAAAATAATATGAAGAAAGTGTCAAAATCAAGGTTATTTATTA
23160553 AATTAGTATAAAAAAACACTTACATAATATACC
384 AATTAGTATAAAAAAACACTTACATAATATACC
* * *
23160586 TAATACATTTGAAACATTTTTTGCTAAAATAATATAAAAAAATAAAATAAGAAAATAATATATTT
1 TAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATAAGAAAATAATATATTT
* * * * *
23160651 TAAAAAACAATAT-ATGAAAAAA-TACGAATAAAGT-GCTAAAATCAGGGTTATTTATTAAAAAA
66 TAAAAAACAATATAATAAAAAAATTACGAAGAAAGTATC-AAAATCAGAGTTATTTAGTAAAAAA
23160713 ATATAAA-AAACACTTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAGAA-ATAA
130 ATATAAAGAAACACTTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAA-AATA-AA
23160776 ATACA-AAAATAATATATTTTTAAAAA-AAT-TACGAAAAAATATA-AATAAAGTGCTAAAATCA
193 ATA-AGAAAATAATATATTTTTAAAAATAATATACGAAAAAA-ATACAATAAAGTGCTAAAATCA
23160837 GGGTTATTTATT-AAAAAATATAAAAAA-ACAATTAAATAATACATTTGAAACATTATGTACTAA
256 GGGTTATTTATTGAAAAAATATAAAAAATAC--TTAAATAATACATTTGAAACATTATGTACTAA
23160900 AATAATATAAAGAAATAAATACGAAAATAATAT
319 AATAATATAAAGAAATAAATACGAAAATAATAT
23160933 ATTTTAAAAA
Statistics
Matches: 320, Mismatches: 20, Indels: 25
0.88 0.05 0.07
Matches are distributed among these distances:
411 2 0.01
412 32 0.10
413 77 0.24
414 10 0.03
415 51 0.16
416 67 0.21
417 9 0.03
423 72 0.22
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (416 bp):
TAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATAAGAAAATAATATATTT
TAAAAAACAATATAATAAAAAAATTACGAAGAAAGTATCAAAATCAGAGTTATTTAGTAAAAAAA
TATAAAGAAACACTTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATA
AGAAAATAATATATTTTTAAAAATAATATACGAAAAAAATACAATAAAGTGCTAAAATCAGGGTT
ATTTATTGAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGTACTAAAATAATA
TAAAGAAATAAATACGAAAATAATATGAAGAAAGTGTCAAAATCAAGGTTATTTATTAAATTAGT
ATAAAAAAACACTTACATAATATACC
Found at i:23161111 original size:710 final size:690
Alignment explanation
Indices: 23159902--23161224 Score: 1718
Period size: 710 Copynumber: 1.9 Consensus size: 690
23159892 TGGTGACGAT
* * *
23159902 TTTTTTGTTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTAAAAAAAAAACCGAAAA
1 TTTTTTGCTAAAATAATATAAAAAATAAAATAAGAAAATAATATATTTAAAAAAAAAA-C-AAAA
* * * **
23159967 TAAAAAAATATGAACAAGGTGCCAAAGTCAGGTTATTTATTAAATTAATATAAAAAACTTAAATA
64 TAAAAAAATACGAACAAAGTGCCAAAATCAGGTTATTTATTAAAAAAATATAAAAAACTTAAATA
* * * *
23160032 ATACATTTGAAAGATTTTATGCTAAAATAAAATACCAAAATAATATATTTTAAAAAATAATATAC
129 ATACATTTGAAACATTTTATGATAAAAAAAAATACAAAAATAATATATTTTAAAAAATAATATAC
*
23160097 GAAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAA
194 GAAAAAAATAC-AATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACAATTAA
*
23160162 ATAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATATGAAAATAATATATT
258 ATAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATT
23160227 TTAAAAAATAATATACGAAAATAAAAAAATTACGAAGAAAGTATCAAAATCAGAGTTATTTAGTA
323 TTAAAAAATAATATACG-----AAAAAAATTACGAAGAAAGTATCAAAATCAGAGTTATTTAGTA
** * ** * * *
23160292 AATTAATATAAAGAAACACTTAAGTAATACATTTGAAATTTTTTTTGCTAAAATAATATAAAAAT
383 AAAAAATATAAAGAAACACTTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
* * * *
23160357 AAAATAAGAAAATAATATATTTTTAAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAAT
448 AAAATAAGAAAATAATATATTTTAAAAAATAATATAAGAAAAAAATACGAAAAAAGTGCCAAAAT
*
23160422 CAGGGTTATTTATTGAAA-AAATATAAAAAATACTTAAATAATACATTTGAAACATTATGTACTA
513 CAGGGTTATTTATT-AAATAAATATAAAAAACACTTAAATAATACATTTGAAACATT-TGTACTA
*
23160486 AAATAATATGAAGAAATAAAATACGAAAATAATATGAAGAAAGTGTCAAAATCAAGGTTATTTAT
576 AAATAATAT-AAAAAATAAAATACGAAAATAATATGAAGAAAGTGTCAAAATCAAGGTTATTTAT
23160551 TAAATTAGTATAAAAAAACACTTACATAATATACCTAATACATTTGAAACA
640 TAAATTAGTATAAAAAAACACTTACATAATATACCTAATACATTTGAAACA
* * * *
23160602 TTTTTTGCTAAAATAATATAAAAAAATAAAATAAGAAAATAATATATTTTAAAAAACAA-TATAT
1 TTTTTTGCTAAAATAATAT-AAAAAATAAAATAAGAAAATAATATATTTAAAAAAAAAACAAAAT
* * *
23160666 GAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAA
65 AAAAAAATACGAACAAAGTGCCAAAATCA-GGTTATTTATTAAAAAAATAT-AAAAA-ACTTAAA
*
23160731 TAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAATACAAAAATAATATATTTT
127 TAATACATTTGAAACA-T-T-T--T---AT--GATAAA-AAA-AAATACAAAAATAATATATTTT
*
23160796 TAAAAA-AAT-TACGAAAAAATATA-AATAAAGTGCTAAAATCAGGGTTATTTATT-AAAAAATA
180 AAAAAATAATATACGAAAAAA-ATACAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATA
23160857 TAAAAAAACAATTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAAT-AAATA
244 T-AAAAAACAATTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATA
* * *
23160921 CGAAAATAATATATTTTAAAAAA-AAT-TACG-AAAAAA-TACGAATAAAGT-GCTAAAATCAGG
308 CGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATTACGAAGAAAGTATC-AAAATCAGA
*
23160981 GTTATTTATTAAAAAAATATAAA-AAACACTTAAATAATACATTTGAAACATTATGTACTAAAAT
372 GTTATTTAGTAAAAAAATATAAAGAAACACTTAAATAATACATTTGAAACATTATGTACTAAAAT
* * * *
23161045 AAGGGTTTTAAAATAAAATAATACGAAAGTAATATATTTTAAAAAATAAGATATGAAAATAAAAA
437 AA---TATAAAAATAAAAT-A-A-GAAAATAATATATTTTAAAAAAT-A-ATAT---AAGAAAAA
* * **
23161110 AATACGAAAAAAGTGCCAAAATCAGTGTTATTTATTAAATTAATATAAAAAACACTTCCATAATA
491 AATACGAAAAAAGTGCCAAAATCAGGGTTATTTATTAAATAAATATAAAAAACACTTAAATAATA
* * *
23161175 CATTTGAAACATTTTTGCTAAAATAATATAAAAAATAATATACGAAAATA
556 CATTTGAAACATTTGTACTAAAATAATATAAAAAATAAAATACGAAAATA
23161225 TTTTACTTAT
Statistics
Matches: 540, Mismatches: 52, Indels: 54
0.84 0.08 0.08
Matches are distributed among these distances:
698 26 0.05
699 57 0.11
700 62 0.11
701 63 0.12
702 13 0.02
703 2 0.00
704 2 0.00
705 21 0.04
706 2 0.00
707 8 0.01
708 22 0.04
709 55 0.10
710 159 0.29
711 14 0.03
712 8 0.01
713 26 0.05
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.30
Consensus pattern (690 bp):
TTTTTTGCTAAAATAATATAAAAAATAAAATAAGAAAATAATATATTTAAAAAAAAAACAAAATA
AAAAAATACGAACAAAGTGCCAAAATCAGGTTATTTATTAAAAAAATATAAAAAACTTAAATAAT
ACATTTGAAACATTTTATGATAAAAAAAAATACAAAAATAATATATTTTAAAAAATAATATACGA
AAAAAATACAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACAATTAAATA
ATACATTTGAAACATTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTA
AAAAATAATATACGAAAAAAATTACGAAGAAAGTATCAAAATCAGAGTTATTTAGTAAAAAAATA
TAAAGAAACACTTAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATAAG
AAAATAATATATTTTAAAAAATAATATAAGAAAAAAATACGAAAAAAGTGCCAAAATCAGGGTTA
TTTATTAAATAAATATAAAAAACACTTAAATAATACATTTGAAACATTTGTACTAAAATAATATA
AAAAATAAAATACGAAAATAATATGAAGAAAGTGTCAAAATCAAGGTTATTTATTAAATTAGTAT
AAAAAAACACTTACATAATATACCTAATACATTTGAAACA
Found at i:23164415 original size:49 final size:49
Alignment explanation
Indices: 23164360--23164648 Score: 461
Period size: 49 Copynumber: 6.1 Consensus size: 49
23164350 ATGTACAAGA
23164360 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
23164409 TATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
23164456 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
23164505 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
23164554 TATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--G
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * *
23164599 TA--TATATATGAAAAGGCCGAATGGTCAATGTGATGGAA-GTGGAAGTG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTG
23164646 TAT
1 TAT
23164649 AGCTGTGATA
Statistics
Matches: 226, Mismatches: 6, Indels: 17
0.91 0.02 0.07
Matches are distributed among these distances:
45 35 0.15
46 3 0.01
47 89 0.39
49 99 0.44
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (49 bp):
TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:23164562 original size:96 final size:97
Alignment explanation
Indices: 23164360--23164648 Score: 450
Period size: 96 Copynumber: 3.0 Consensus size: 97
23164350 ATGTACAAGA
23164360 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG--TATGTGATAA
1 TATG-ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
*
23164423 GGCCGAATGGCCAATGTGATGAATGTGAAGGTG
65 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG
23164456 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
1 TATG-ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
23164521 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG
65 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* *
23164554 TATG-TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTA--TATATATGAAAAG
1 TATGATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAG
* *
23164614 GCCGAATGGTCAATGTGATGGAA-GTGGAAGTG
66 GCCGAATGGCCAATGTGAT-GAATGTGAAAGTG
23164646 TAT
1 TAT
23164649 AGCTGTGATA
Statistics
Matches: 185, Mismatches: 5, Indels: 10
0.93 0.03 0.05
Matches are distributed among these distances:
92 40 0.22
93 3 0.02
94 3 0.02
96 93 0.50
98 46 0.25
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (97 bp):
TATGATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:23167853 original size:72 final size:72
Alignment explanation
Indices: 23167761--23167900 Score: 228
Period size: 72 Copynumber: 1.9 Consensus size: 72
23167751 GTCCGAGCGA
* *
23167761 TCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACTATTTCCTGGG
1 TCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCGGG
23167826 CTCGTCG
66 CTCGTCG
* *
23167833 TCGCATTCACATTC-AGCTGATACTTCTTATCATCTGGATTTGGCGGGCAATGACAATTTCCCGG
1 TCGCATTCACATTCGA-CTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCGG
23167897 GCTC
65 GCTC
23167901 ATCGGGGGGC
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
71 1 0.02
72 62 0.98
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (72 bp):
TCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCGGG
CTCGTCG
Found at i:23173081 original size:37 final size:38
Alignment explanation
Indices: 23173011--23173105 Score: 120
Period size: 37 Copynumber: 2.5 Consensus size: 38
23173001 AGGTTTTTTT
** **
23173011 ACAATAATAATAACTAACAATAATTATGGTTTTTACTA
1 ACAATAATAATAACTAACAATAACAATAATTTTTACTA
*
23173049 ACAATAATAATAAC-AATAATAACAATAATTTTTACTA
1 ACAATAATAATAACTAACAATAACAATAATTTTTACTA
* *
23173086 ACAATATTAATAACTCACAA
1 ACAATAATAATAACTAACAA
23173106 CAAAAAATAA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
37 31 0.65
38 17 0.35
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.33
Consensus pattern (38 bp):
ACAATAATAATAACTAACAATAACAATAATTTTTACTA
Found at i:23173222 original size:19 final size:18
Alignment explanation
Indices: 23173189--23173229 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
23173179 AAAAATTATA
23173189 CCTTC-TTTTTTCCTTCT
1 CCTTCTTTTTTTCCTTCT
23173206 CCTTCTTTTTCTTCCTTCT
1 CCTTCTTTTT-TTCCTTCT
23173225 -CTTCT
1 CCTTCT
23173230 CCTTTCTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.23
18 9 0.41
19 8 0.36
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (18 bp):
CCTTCTTTTTTTCCTTCT
Found at i:23173235 original size:19 final size:19
Alignment explanation
Indices: 23173189--23173237 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
23173179 AAAAATTATA
23173189 CCTTCT-TTT-TTCCTTCT
1 CCTTCTCTTTCTTCCTTCT
*
23173206 CCTTCTTTTTCTTCCTTCT
1 CCTTCTCTTTCTTCCTTCT
23173225 -CTTCTCCTTTCTT
1 CCTTCT-CTTTCTT
23173238 TCCCTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 6 0.21
18 8 0.29
19 14 0.50
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (19 bp):
CCTTCTCTTTCTTCCTTCT
Found at i:23173399 original size:18 final size:18
Alignment explanation
Indices: 23173376--23173419 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
23173366 CACTTTTTTA
*
23173376 TTTTTTTT-GTTTTCAGT
1 TTTTTTTTCGTTTTCAAT
*
23173393 GTTTTTTTTCTTTTTCAAT
1 -TTTTTTTTCGTTTTCAAT
23173412 TTTTTTTT
1 TTTTTTTT
23173420 ATTGTTGCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.80
Consensus pattern (18 bp):
TTTTTTTTCGTTTTCAAT
Found at i:23173400 original size:19 final size:19
Alignment explanation
Indices: 23173376--23173425 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
23173366 CACTTTTTTA
*
23173376 TTTTTTTTGTTTTCAGTGT
1 TTTTTTTTGTTTTCAATGT
*
23173395 TTTTTTTCT-TTTTCAATTT
1 TTTTTTT-TGTTTTCAATGT
23173414 TTTTTTATTGTT
1 TTTTTT-TTGTT
23173426 GCGACTGTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 22 0.85
20 4 0.15
ACGTcount: A:0.08, C:0.06, G:0.08, T:0.78
Consensus pattern (19 bp):
TTTTTTTTGTTTTCAATGT
Found at i:23176553 original size:79 final size:79
Alignment explanation
Indices: 23176370--23176926 Score: 772
Period size: 79 Copynumber: 7.1 Consensus size: 79
23176360 AATTAAAGGT
* * * * *
23176370 AAATAAAATCCATTTCGGGATTGATTCCC-ACTGTTCAATGATTTTATTCCAAATTTTA-TTTAT
1 AAATAAAATCCGTTTCGAGATTGATTCCCGTC-GTTTAACGATTTTATTCCAAATTTTATTTTAT
*
23176433 TT-CTAAAATCGAGTA
65 TTCCAAAAAT-GAGTA
* * *
23176448 AAATAAAATCCATTTCGGGATTGATTCCTGTCGTTTAACGATTTTATTCCAAATTTTATTTTATT
1 AAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCAAATTTTATTTTATT
23176513 TCCAAAAATGAGTA
66 TCCAAAAATGAGTA
* ** * *
23176527 AAATAAAATCCGTTTCGGGATTGATTCGTGTCGTTTAACAATTTTATTCCAAATTTTGTTTTATT
1 AAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCAAATTTTATTTTATT
23176592 TCCAAAAATGAGTA
66 TCCAAAAATGAGTA
23176606 AAATAAAATCCGTTTCGAGATTGATTCCCG-CTGTTTAACGATTTTATTCCAAATTTTATTTTAT
1 AAATAAAATCCGTTTCGAGATTGATTCCCGTC-GTTTAACGATTTTATTCCAAATTTTATTTTAT
23176670 TTCCAAAAATGAGTA
65 TTCCAAAAATGAGTA
* *
23176685 AAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTCATTCCAAATTTTGTTTTATT
1 AAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCAAATTTTATTTTATT
*
23176750 TCCAAAAAGGAGTA
66 TCCAAAAATGAGTA
* *
23176764 AAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTCATTCCAAATTTTGTTTTATT
1 AAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCAAATTTTATTTTATT
*
23176829 TCCAAAAACGAGTA
66 TCCAAAAATGAGTA
* *
23176843 AAATAAAATCCGTTTCGAGATTGATTCCCG-CTGTTCAACGGA-TTTATT--ACATTTTGATTTT
1 AAATAAAATCCGTTTCGAGATTGATTCCCGTC-GTTTAAC-GATTTTATTCCAAATTTT-ATTTT
* *
23176904 GTTACCAAAAATGAG-A
63 ATTTCCAAAAATGAGTA
*
23176920 AATTAAA
1 AAATAAA
23176927 TTAAATAAAA
Statistics
Matches: 445, Mismatches: 26, Indels: 17
0.91 0.05 0.03
Matches are distributed among these distances:
77 13 0.03
78 70 0.16
79 353 0.79
80 9 0.02
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (79 bp):
AAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCAAATTTTATTTTATT
TCCAAAAATGAGTA
Found at i:23176871 original size:158 final size:158
Alignment explanation
Indices: 23176282--23176872 Score: 778
Period size: 158 Copynumber: 3.7 Consensus size: 158
23176272 TATTAAAACT
* * * * *
23176282 AATAAAATCTGTTTC-AGGATTTATTCCAGCCGTTCAACAGATTTTATTCCATTAATTTTATTTT
1 AATAAAATCCGTTTCGA-GATTGATTCCCGTCGTTTAAC-GATTTTATTCCA--AATTTTATTTT
* * * * * *
23176346 ATTTCCAAACGGGAAATTAAAGGT-AAATAAAATCCATTTCGGGATTGATTCCC-ACTGTTCAAT
62 ATTTCC-AA----AAA-T-GA-GTAAAATAAAATCCGTTTCGAGATTGATTCCCGTC-GTTTAAC
* * *
23176409 GATTTTATTCCAAATTTT-ATTTATTTCTAAAATCGAGTAA
118 GATTTTATTCCAAATTTTGTTTTATTTCCAAAAACGAGTAA
* * *
23176449 AATAAAATCCATTTCGGGATTGATTCCTGTCGTTTAACGATTTTATTCCAAATTTTATTTTATTT
1 AATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCAAATTTTATTTTATTT
* ** *
23176514 CCAAAAATGAGTAAAATAAAATCCGTTTCGGGATTGATTCGTGTCGTTTAACAATTTTATTCCAA
66 CCAAAAATGAGTAAAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCAA
*
23176579 ATTTTGTTTTATTTCCAAAAATGAGTAA
131 ATTTTGTTTTATTTCCAAAAACGAGTAA
23176607 AATAAAATCCGTTTCGAGATTGATTCCCG-CTGTTTAACGATTTTATTCCAAATTTTATTTTATT
1 AATAAAATCCGTTTCGAGATTGATTCCCGTC-GTTTAACGATTTTATTCCAAATTTTATTTTATT
*
23176671 TCCAAAAATGAGTAAAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTCATTCCA
65 TCCAAAAATGAGTAAAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCA
*
23176736 AATTTTGTTTTATTTCCAAAAAGGAGTAA
130 AATTTTGTTTTATTTCCAAAAACGAGTAA
* *
23176765 AATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTCATTCCAAATTTTGTTTTATTT
1 AATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCAAATTTTATTTTATTT
*
23176830 CCAAAAACGAGTAAAATAAAATCCGTTTCGAGATTGATTCCCG
66 CCAAAAATGAGTAAAATAAAATCCGTTTCGAGATTGATTCCCG
23176873 CTGTTCAACG
Statistics
Matches: 387, Mismatches: 31, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
156 2 0.01
157 50 0.13
158 270 0.70
159 4 0.01
163 2 0.01
164 17 0.04
166 12 0.03
167 30 0.08
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (158 bp):
AATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCAAATTTTATTTTATTT
CCAAAAATGAGTAAAATAAAATCCGTTTCGAGATTGATTCCCGTCGTTTAACGATTTTATTCCAA
ATTTTGTTTTATTTCCAAAAACGAGTAA
Found at i:23177073 original size:83 final size:83
Alignment explanation
Indices: 23176920--23177081 Score: 206
Period size: 83 Copynumber: 2.0 Consensus size: 83
23176910 AAAAATGAGA
* * *
23176920 AATTAAATTAAATAAAATATGTTTCGAGATTTATTCCCATCGTTAACAAGATTTTATTTTATTTG
1 AATTAAATTAAATAAAATATGTTTCAAGATTTACTCCCACCGTTAACAAGATTTTATTTTATTTG
23176985 ATTTTGTTTCCAAATTTG
66 ATTTTGTTTCCAAATTTG
* * *
23177003 AATTGAATTAAATAAAATCTGTTTCAAGATTTACTGCCACCGTTTAAC-A-ATTTT-TTTTCGAT
1 AATTAAATTAAATAAAATATGTTTCAAGATTTACTCCCACCG-TTAACAAGATTTTATTTT--AT
23177065 ATTG-TTTTGTTTCCAAA
63 -TTGATTTTGTTTCCAAA
23177082 CAAATACGTA
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
81 4 0.06
82 5 0.07
83 52 0.75
84 8 0.12
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.46
Consensus pattern (83 bp):
AATTAAATTAAATAAAATATGTTTCAAGATTTACTCCCACCGTTAACAAGATTTTATTTTATTTG
ATTTTGTTTCCAAATTTG
Found at i:23177189 original size:59 final size:59
Alignment explanation
Indices: 23177097--23177208 Score: 145
Period size: 59 Copynumber: 1.9 Consensus size: 59
23177087 ACGTAATCAA
* * * * * *
23177097 ATAATTCTGTTTCGGGATTTATTCTCTCCGTTTAGCAAATTTTTTTTTGATTTAATGAT
1 ATAATTCTGTTTCAGGATTTAATATCTCCGTTTAACAAAATTGTTTTTGATTTAATGAT
*
23177156 ATAATTTTGTTTCAGGATTTAATAT-TGCCGTTTAACAAAATTGTTTTTGATTT
1 ATAATTCTGTTTCAGGATTTAATATCT-CCGTTTAACAAAATTGTTTTTGATTT
23177209 TGTTTCAGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
58 1 0.02
59 44 0.98
ACGTcount: A:0.25, C:0.10, G:0.13, T:0.52
Consensus pattern (59 bp):
ATAATTCTGTTTCAGGATTTAATATCTCCGTTTAACAAAATTGTTTTTGATTTAATGAT
Found at i:23184995 original size:23 final size:23
Alignment explanation
Indices: 23184965--23185009 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
23184955 AAATATAGTA
23184965 TTAATAGTTAATTAATACATTAT
1 TTAATAGTTAATTAATACATTAT
* *
23184988 TTAATAGTTGATTAGTACATTA
1 TTAATAGTTAATTAATACATTA
23185010 AAAAAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (23 bp):
TTAATAGTTAATTAATACATTAT
Found at i:23190022 original size:73 final size:73
Alignment explanation
Indices: 23189935--23190131 Score: 286
Period size: 84 Copynumber: 2.5 Consensus size: 73
23189925 ACAACTTGAC
23189935 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
23190000 CACTAACA
66 CACTAACA
23190008 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCATCATTACATCCACTTAAAATAAATCA
1 AACTTAGTTGGAATACAACTAAG--------TT---TCATCATTACATCCACTTAAAATAAATCA
23190073 CCACCTACTACCACTAACA
55 CCACCTACTACCACTAACA
*
23190092 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
23190132 AATAATAATA
Statistics
Matches: 112, Mismatches: 1, Indels: 22
0.83 0.01 0.16
Matches are distributed among these distances:
73 37 0.33
76 2 0.02
81 2 0.02
84 71 0.63
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:23190048 original size:84 final size:84
Alignment explanation
Indices: 23189960--23190129 Score: 331
Period size: 84 Copynumber: 2.0 Consensus size: 84
23189950 CAACTAAGTT
23189960 TCATCATTACATCCACTTAAAATAAATCACCACCTACTACCACTAACAAACTTAGTTGGAATACA
1 TCATCATTACATCCACTTAAAATAAATCACCACCTACTACCACTAACAAACTTAGTTGGAATACA
*
23190025 ACTAAGTTTCATCATTACA
66 ACTAAGTTACATCATTACA
23190044 TCATCATTACATCCACTTAAAATAAATCACCACCTACTACCACTAACAAACTTAGTTGGAATACA
1 TCATCATTACATCCACTTAAAATAAATCACCACCTACTACCACTAACAAACTTAGTTGGAATACA
23190109 ACTAAGTTACATCATTACA
66 ACTAAGTTACATCATTACA
23190128 TC
1 TC
23190130 CAAATAATAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 85 1.00
ACGTcount: A:0.41, C:0.26, G:0.05, T:0.28
Consensus pattern (84 bp):
TCATCATTACATCCACTTAAAATAAATCACCACCTACTACCACTAACAAACTTAGTTGGAATACA
ACTAAGTTACATCATTACA
Found at i:23190140 original size:3 final size:3
Alignment explanation
Indices: 23190132--23190169 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
23190122 ATTACATCCA
23190132 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
23190170 AACATGTGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:23194432 original size:3 final size:3
Alignment explanation
Indices: 23194426--23194460 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
23194416 ATTACAGCCA
23194426 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
23194461 AACATGTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:23208251 original size:41 final size:41
Alignment explanation
Indices: 23208205--23208282 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
23208195 TTTGATCTCT
23208205 AAAAAGGATTTAGTCATACTTTTTGACGCCATTCTTAGATA
1 AAAAAGGATTTAGTCATACTTTTTGACGCCATTCTTAGATA
23208246 AAAAAGGATTTAGTCATACTTTTTGACGCCATTCTTA
1 AAAAAGGATTTAGTCATACTTTTTGACGCCATTCTTA
23208283 CTCCCACCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.37
Consensus pattern (41 bp):
AAAAAGGATTTAGTCATACTTTTTGACGCCATTCTTAGATA
Found at i:23211239 original size:27 final size:27
Alignment explanation
Indices: 23210945--23211240 Score: 310
Period size: 27 Copynumber: 11.0 Consensus size: 27
23210935 ATATCCCTAG
* *
23210945 TTTGTAAAATTACCAAAATACCCCTAA
1 TTTGTAAAATTACCAAAATACCCTTGA
* * *
23210972 TTTATGAAATTACCAAAATATCCTTGA
1 TTTGTAAAATTACCAAAATACCCTTGA
* * * **
23210999 TTTGTGAAATTATCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCCTTGA
*
23211026 TTTGTAAAATTACCAAAATACCCCTGA
1 TTTGTAAAATTACCAAAATACCCTTGA
* * *
23211053 TTTGTAAAATTATCGAAATACCCTCGA
1 TTTGTAAAATTACCAAAATACCCTTGA
* * *
23211080 CTTGTAAAATAACCAAAATACCCTAGA
1 TTTGTAAAATTACCAAAATACCCTTGA
*
23211107 TTTATAAAATTACCAAAATA-CCTCTGA
1 TTTGTAAAATTACCAAAATACCCT-TGA
* *
23211134 TTTGAAAAATTACTAAAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCCTTGA
* * *
23211161 TTTGGAAAATTA-TAGAAATACCAC-TGG
1 TTTGTAAAATTACCA-AAATACC-CTTGA
*
23211188 TTTGTAAAATTACCAAAATACCCTTGG
1 TTTGTAAAATTACCAAAATACCCTTGA
* *
23211215 TTTGTAAATTTACCAAAACACCCTTG
1 TTTGTAAAATTACCAAAATACCCTTG
23211241 TAGGGTGAAA
Statistics
Matches: 224, Mismatches: 39, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
26 6 0.03
27 213 0.95
28 5 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCTTGA
Found at i:23211535 original size:41 final size:41
Alignment explanation
Indices: 23211477--23211559 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
23211467 TGGAGGAAGA
*
23211477 AATTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACC
1 AATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACC
* * *
23211518 AATTGAGGATCGCATGGTTGCTTGATGATCGTGGATTCACC
1 AATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACC
23211559 A
1 A
23211560 GTGGCTTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (41 bp):
AATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACC
Found at i:23212064 original size:11 final size:11
Alignment explanation
Indices: 23212048--23212073 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23212038 ATTACATGTA
23212048 TGATATTATTG
1 TGATATTATTG
23212059 TGATATTATTG
1 TGATATTATTG
23212070 TGAT
1 TGAT
23212074 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:23214796 original size:27 final size:27
Alignment explanation
Indices: 23214774--23215106 Score: 198
Period size: 27 Copynumber: 12.3 Consensus size: 27
23214764 AGAATTACTG
*
23214774 AAATACCTCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* * * * *
23214801 AAATACCCCTAATTTTTGAAATTATCG
1 AAATACCCCTAGTTTGTAAAATTACCA
* * *
23214828 AAATACCCTCGAG-CTGTAAAATTACCG
1 AAATACCC-CTAGTTTGTAAAATTACCA
* * *
23214855 AGATA-CCCTCGATTTGTAAAGTTACCA
1 AAATACCCCTAG-TTTGTAAAATTACCA
*
23214882 AAATACCCCT-GATTTGTAAAATTATCA
1 AAATACCCCTAG-TTTGTAAAATTACCA
* *
23214909 AAATA-CCCTCGACTTGTAAAATTACCA
1 AAATACCCCTAG-TTTGTAAAATTACCA
* * *
23214936 AAATACCCCTAATTTGAAAAATTACCG
1 AAATACCCCTAGTTTGTAAAATTACCA
* * *
23214963 AAATA-CCCTTGATTTGGAAAATTACAA
1 AAATACCCCTAG-TTTGTAAAATTACCA
**
23214990 AAATACCCCT-GATTTACAAAATTA-CA
1 AAATACCCCTAG-TTTGTAAAATTACCA
* * * **
23215016 GAAATACTCTTAACTTTCAAAAATTA-CA
1 -AAATACCCCT-AGTTTGTAAAATTACCA
** *
23215044 GAAATACCATTGGTTTGTAAAATTACCA
1 -AAATACCCCTAGTTTGTAAAATTACCA
* * *
23215072 AAATA-CCCTTGTTTTGTAGATTTACCA
1 AAATACCCCTAG-TTTGTAAAATTACCA
*
23215099 AAACACCC
1 AAATACCC
23215107 TTGTAGTGTG
Statistics
Matches: 239, Mismatches: 53, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
25 2 0.01
26 14 0.06
27 184 0.77
28 39 0.16
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATACCCCTAGTTTGTAAAATTACCA
Found at i:23214824 original size:54 final size:54
Alignment explanation
Indices: 23214774--23215089 Score: 223
Period size: 54 Copynumber: 5.8 Consensus size: 54
23214764 AGAATTACTG
* * * * *
23214774 AAATACCTCTAGTTTGTAAAATTACCAAAATACCCCTAATTTTTGAAATTATC-G
1 AAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTA-CAA
* * * * * *
23214828 AAATACCCTCGAG-CTGTAAAATTACCGAGATA-CCCTCGATTTGTAAAGTTACCA
1 AAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCT-GATTTGTAAAATTACAA
* * *
23214882 AAATACCCCT-GATTTGTAAAATTATCAAAATA-CCCTCGACTTGTAAAATTACCA
1 AAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCT-GATTTGTAAAATTACAA
* * * * *
23214936 AAATACCCCTAATTTGAAAAATTACCGAAATACCCTTGATTTGGAAAATTACAA
1 AAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACAA
** * * * ** *
23214990 AAATACCCCT-GATTTACAAAATTA-CAGAAATACTCTTAACTTTCAAAAATTACAG
1 AAATACCCCTAG-TTTGTAAAATTACCA-AAATACCCCTGA-TTTGTAAAATTACAA
** * * *
23215045 AAATACCATTGGTTTGTAAAATTACCAAAATACCCTTGTTTTGTA
1 AAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
23215090 GATTTACCAA
Statistics
Matches: 207, Mismatches: 43, Indels: 24
0.76 0.16 0.09
Matches are distributed among these distances:
52 1 0.00
53 7 0.03
54 151 0.73
55 45 0.22
56 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACAA
Found at i:23214874 original size:81 final size:81
Alignment explanation
Indices: 23214774--23215080 Score: 266
Period size: 81 Copynumber: 3.8 Consensus size: 81
23214764 AGAATTACTG
* * * * *
23214774 AAATACCTCTAGTTTGTAAAATTACCAAAATACCCCTAATTTTTGAAATTATCGAAATACCCTCG
1 AAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCTCG
*
23214839 AGC-TGTAAAATTACCG
66 A-CTTGTAAAATTACCA
* * * *
23214855 AGATA-CCCTCGATTTGTAAAGTTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCTC
1 AAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCTC
23214919 GACTTGTAAAATTACCA
65 GACTTGTAAAATTACCA
* * * * *
23214936 AAATACCCCTAATTTGAAAAATTACCGAAATACCCTTGATTTGGAAAATTA-CAAAAATACCC-C
1 AAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATC-AAAATACCCTC
* **
23214999 TGATTTACAAAATTA-CA
65 -GACTTGTAAAATTACCA
* * ** ** ** *
23215016 GAAATACTCTTAACTTTCAAAAATTA-CAGAAATACCATTGGTTTGTAAAATTACCAAAATACCC
1 -AAATACCCCTAA-TTTGTAAAATTACCA-AAATACCCCTAATTTGTAAAATTATCAAAATACCC
23215080 T
63 T
23215081 TGTTTTGTAG
Statistics
Matches: 189, Mismatches: 27, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
80 8 0.04
81 135 0.71
82 45 0.24
83 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCTCG
ACTTGTAAAATTACCA
Found at i:23215404 original size:41 final size:41
Alignment explanation
Indices: 23215347--23215467 Score: 206
Period size: 41 Copynumber: 3.0 Consensus size: 41
23215337 GGAGGAAGAA
*
23215347 ATTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
*
23215388 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* *
23215429 ATTGAGGATTGCATGGTTGCTTGACAACCGTGGATCCAC
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCAC
23215468 TGGTGGCTTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:23215654 original size:22 final size:22
Alignment explanation
Indices: 23215626--23215674 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
23215616 ATAGTTTTGC
23215626 GCCAACCT-ACATATGGCTCTGT
1 GCCAACCTGA-ATATGGCTCTGT
* *
23215648 GCCAACCTGATTATGGCTGTGT
1 GCCAACCTGAATATGGCTCTGT
23215670 GCCAA
1 GCCAA
23215675 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (22 bp):
GCCAACCTGAATATGGCTCTGT
Found at i:23215974 original size:11 final size:11
Alignment explanation
Indices: 23215958--23215983 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23215948 ATTGCGTGTA
23215958 TGATATTATTG
1 TGATATTATTG
23215969 TGATATTATTG
1 TGATATTATTG
23215980 TGAT
1 TGAT
23215984 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:23225014 original size:40 final size:40
Alignment explanation
Indices: 23224921--23225057 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
23224911 AAGCCAAGTA
* * *
23224921 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGC-TCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACCAATG
*
23224959 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
*
23224999 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
23225039 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23225058 TTATCATCCA
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
38 12 0.13
39 16 0.18
40 62 0.69
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
Found at i:23237547 original size:17 final size:19
Alignment explanation
Indices: 23237518--23237552 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
23237508 TTTCTCTTTT
23237518 CTTTGCTAAGCTC-ATCAG
1 CTTTGCTAAGCTCTATCAG
23237536 CTTTGC-AAGCTCTATCA
1 CTTTGCTAAGCTCTATCA
23237553 ACTAGAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (19 bp):
CTTTGCTAAGCTCTATCAG
Found at i:23244308 original size:56 final size:56
Alignment explanation
Indices: 23244246--23244491 Score: 341
Period size: 56 Copynumber: 4.4 Consensus size: 56
23244236 CATGGCATCT
* * *
23244246 ATATATGTGTGCGAGTAAGATCACGTTTAATACATTGGCATCGGTATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
* * * *
23244302 ATATATGTGTGCGATTAAGACCACATTTAATACGTTGGCATCAATATGTAAATT-CG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT-GATTCCG
* * * * *
23244358 ATATATGTGTGCGAGTAAGACCATGTTTAATATGTTGACATTGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
**
23244414 ATATATCCGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
*
23244470 ATTTATGTGTGCGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
23244492 CTATTTGGGA
Statistics
Matches: 163, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
55 3 0.02
56 157 0.96
57 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
Found at i:23244509 original size:56 final size:56
Alignment explanation
Indices: 23244246--23244522 Score: 326
Period size: 56 Copynumber: 4.9 Consensus size: 56
23244236 CATGGCATCT
* * * *
23244246 ATATATGTGTGCGAGTAAGATCACGTTTAATACATTGGCATCGGTATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCG
* * *
23244302 ATATATGTGTGCGATTAAGACCACATTTAATACGTTGGCATCAATATGTAAATT-CG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGT-GATTCCG
** * * * *
23244358 ATATATGTGTGCGAGTAAGACCATGTTTAATATGTTGACATTGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCG
** *
23244414 ATATATCCGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCG
* ***
23244470 ATTTATGTGTGCGAGTAAGACC-CTATTTGGGACAG-TGGCATCGATATGTGATT
1 ATATATGTGTGCGAGTAAGACCAC-ATTTAATAC-GTTGGCATCGATATGTGATT
23244523 ACATGTAAGA
Statistics
Matches: 188, Mismatches: 29, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
55 4 0.02
56 180 0.96
57 4 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCG
Found at i:23247442 original size:13 final size:13
Alignment explanation
Indices: 23247424--23247450 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23247414 GTCTGTTGAG
23247424 TTTGTGATTAGAA
1 TTTGTGATTAGAA
23247437 TTTGTGATTAGAA
1 TTTGTGATTAGAA
23247450 T
1 T
23247451 ATCGAACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TTTGTGATTAGAA
Found at i:23249300 original size:12 final size:12
Alignment explanation
Indices: 23249283--23249313 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
23249273 GACTGGGGAC
23249283 AAAGTCTTTTTG
1 AAAGTCTTTTTG
23249295 AAAGTCTTTTTG
1 AAAGTCTTTTTG
23249307 AAAGTCT
1 AAAGTCT
23249314 CACCATGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (12 bp):
AAAGTCTTTTTG
Found at i:23251022 original size:28 final size:27
Alignment explanation
Indices: 23250990--23251078 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
23250980 GTGACAGAGT
23250990 CACCAGATACA-ATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
23251018 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
23251045 CACGAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
23251073 CACCAG
1 CACCAG
23251079 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
27 26 0.50
28 26 0.50
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:23251037 original size:55 final size:55
Alignment explanation
Indices: 23250965--23251078 Score: 126
Period size: 55 Copynumber: 2.1 Consensus size: 55
23250955 AGCATGGTTG
* *
23250965 CCAGATACAGAAAATGTGACAGAGTCACCAGATACA-ATATTTTGTGGCAGT-GCCA
1 CCAGATACAGAAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
23251020 CCAGA-ACAGATATATGTGGCAGGGCCACGAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGA-AAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
23251075 CCAG
1 CCAG
23251079 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
54 9 0.18
55 41 0.82
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (55 bp):
CCAGATACAGAAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:23251046 original size:27 final size:27
Alignment explanation
Indices: 23250979--23251078 Score: 103
Period size: 28 Copynumber: 3.6 Consensus size: 27
23250969 ATACAGAAAA
* *
23250979 TGTGACAGAGTCACCAGATACA-ATATTT
1 TGTGGCAGAGCCACCAGA-ACAGATA-TT
* *
23251007 TGTGGCAGTGCCACCAGAACAGATATA
1 TGTGGCAGAGCCACCAGAACAGATATT
* *
23251034 TGTGGCAGGGCCACGAGAACAGATAATT
1 TGTGGCAGAGCCACCAGAACAGAT-ATT
*
23251062 TGTGGCATAGCCACCAG
1 TGTGGCAGAGCCACCAG
23251079 GACGCTTCCT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
27 26 0.43
28 34 0.57
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (27 bp):
TGTGGCAGAGCCACCAGAACAGATATT
Found at i:23251231 original size:28 final size:28
Alignment explanation
Indices: 23251184--23251274 Score: 134
Period size: 28 Copynumber: 3.3 Consensus size: 28
23251174 AAATTAACCC
*
23251184 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
23251212 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
23251240 TA-GGGTATAATGGTAA-TTTGTATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
23251266 TAGGGGTAT
1 TAGGGGTAT
23251275 TCTAGTACAT
Statistics
Matches: 59, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
26 11 0.19
27 21 0.36
28 27 0.46
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:23258891 original size:55 final size:56
Alignment explanation
Indices: 23258826--23258939 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 56
23258816 AGCATGGCTG
* *
23258826 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
23258882 CCAGA-ACAGATATATGTGGCAGGGCCACTAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
23258937 CCA
1 CCA
23258940 AGACGCTTCC
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.56
56 21 0.42
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:23258903 original size:27 final size:27
Alignment explanation
Indices: 23258851--23258939 Score: 108
Period size: 27 Copynumber: 3.2 Consensus size: 27
23258841 GTGACAGAGT
23258851 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
23258880 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
23258907 CACTAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
23258935 CACCA
1 CACCA
23258940 AGACGCTTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:23259093 original size:28 final size:28
Alignment explanation
Indices: 23259046--23259138 Score: 161
Period size: 28 Copynumber: 3.3 Consensus size: 28
23259036 AAATTAACCC
*
23259046 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
23259074 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
23259102 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
23259130 TAGGGGTAT
1 TAGGGGTAT
23259139 TCTAGTACAT
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
27 1 0.02
28 62 0.98
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:23261932 original size:56 final size:56
Alignment explanation
Indices: 23261846--23262081 Score: 382
Period size: 56 Copynumber: 4.2 Consensus size: 56
23261836 TAGATGTCTA
23261846 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
*
23261902 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATATGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
** * * *
23261958 CGAGTAAGACCATATTTAATACTTTGGCATCGATATGTGATTTTGATATATGTGTA
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
* * *
23262014 CGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTCCGATTTATGTGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
23262070 CAGAGTAAGACC
1 C-GAGTAAGACC
23262082 CTGTCTGGGA
Statistics
Matches: 166, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
56 156 0.94
57 10 0.06
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
Found at i:23265103 original size:41 final size:41
Alignment explanation
Indices: 23265046--23265123 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
23265036 ATATATATAT
23265046 ATAACTTCAAAAGTACCAAAATAGATTATCGATAGTGGTAC
1 ATAACTTCAAAAGTACCAAAATAGATTATCGATAGTGGTAC
*
23265087 ATAACTTCAAAAGTACCAAAATAGTTTATCGATAGTG
1 ATAACTTCAAAAGTACCAAAATAGATTATCGATAGTG
23265124 CGATGACGTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (41 bp):
ATAACTTCAAAAGTACCAAAATAGATTATCGATAGTGGTAC
Found at i:23272492 original size:40 final size:39
Alignment explanation
Indices: 23272394--23272617 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 39
23272384 TCCTCGTTCA
* * ** * *
23272394 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
23272433 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
23272472 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
23272512 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
23272552 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
23272593 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAACCCGGAT
23272618 AGCATTCAAT
Statistics
Matches: 157, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 109 0.69
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:23272550 original size:80 final size:79
Alignment explanation
Indices: 23272392--23272617 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
23272382 GCTCCTCGTT
* * ** * *
23272392 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
23272457 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
23272471 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
23272536 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
23272551 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
23272614 GGAT
63 GGAT
23272618 AGCATTCAAT
Statistics
Matches: 125, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 41 0.33
80 78 0.62
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:23272616 original size:120 final size:119
Alignment explanation
Indices: 23272394--23272617 Score: 290
Period size: 120 Copynumber: 1.9 Consensus size: 119
23272384 TCCTCGTTCA
* * *
23272394 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
23272459 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
23272513 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
23272577 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGAT
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGAT
23272618 AGCATTCAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 38 0.43
120 43 0.48
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:23272625 original size:41 final size:41
Alignment explanation
Indices: 23272548--23272625 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23272538 TTAGTATCTC
* *
23272548 GCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAACCCGGATACATTCACTTA
*
23272589 GCACAAA-GCCTTCGGGA-CTTAGCCCGGATAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAACCCGGATA-CATTCA
23272626 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAACCCGGATACATTCACTTA
Found at i:23279594 original size:40 final size:39
Alignment explanation
Indices: 23279496--23279718 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
23279486 TCCTCGTTCA
* * * ** * *
23279496 AATGCCTTCGGGACATAGCCCAGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
23279535 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
23279574 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
23279614 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
23279654 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
23279695 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23279719 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.25
40 108 0.70
41 8 0.05
42 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:23279652 original size:80 final size:79
Alignment explanation
Indices: 23279494--23279718 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
23279484 GCTCCTCGTT
* * * ** * *
23279494 CAAATGCCTTCGGGACATAGCCCAGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
23279559 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
23279573 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
23279638 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
23279653 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
23279716 GGA
63 GGA
23279719 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 40 0.33
80 77 0.63
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:23279718 original size:120 final size:119
Alignment explanation
Indices: 23279496--23279718 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 119
23279486 TCCTCGTTCA
* * *
23279496 AATGCCTTCGGGACATAGCCCAGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCAGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
23279561 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * * *
23279615 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCAGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
23279679 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
23279719 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCAGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:23284702 original size:42 final size:45
Alignment explanation
Indices: 23284617--23284722 Score: 128
Period size: 42 Copynumber: 2.4 Consensus size: 45
23284607 AGCTGTATCA
* *
23284617 ATCTCACACACTAAGTGCCAATATATATATAGCCAAAGCTATCTCG
1 ATCTCGCACACTAAGTG-CAATAGATATATAGCCAAAGCTATCTCG
* *
23284663 ATCTCGCACACTAAGTGCAA-AGATATA-ATCGAAA-CTATCTCG
1 ATCTCGCACACTAAGTGCAATAGATATATAGCCAAAGCTATCTCG
* *
23284705 ATTTCGCACATTAAGTGC
1 ATCTCGCACACTAAGTGC
23284723 CCATAATTAG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
42 24 0.44
43 5 0.09
44 6 0.11
45 3 0.06
46 16 0.30
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (45 bp):
ATCTCGCACACTAAGTGCAATAGATATATAGCCAAAGCTATCTCG
Found at i:23286796 original size:18 final size:18
Alignment explanation
Indices: 23286773--23286813 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
23286763 TTTACTTAGT
23286773 ACTTGAACGACTGTGTAC
1 ACTTGAACGACTGTGTAC
* *
23286791 ACTTGAATGATTGTGTAC
1 ACTTGAACGACTGTGTAC
23286809 ACTTG
1 ACTTG
23286814 CACAAACCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (18 bp):
ACTTGAACGACTGTGTAC
Found at i:23291781 original size:28 final size:28
Alignment explanation
Indices: 23291749--23291821 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
23291739 TATAGTACTC
* *
23291749 AGTGTACGAAATATTGAGAATGGCACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
23291777 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
23291805 AGTGTGCAAAATATTGA
1 AGTGTGCGAAATATTGA
23291822 ATGATTCAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:23293799 original size:29 final size:29
Alignment explanation
Indices: 23293765--23294029 Score: 214
Period size: 29 Copynumber: 9.6 Consensus size: 29
23293755 CCGTAACCGA
* *
23293765 GCACTGTATGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCAGTTGTTGAG
23293794 GCACTGTGTGTGCGAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGATCAGTTGTTGAG
* * * * ****
23293823 GCATTGTGTGTACGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCAGTTGTTGAG
* *
23293851 ACACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCAGTTGTTGAG
* * * **
23293880 GCACTGTGTGTGCGAGTTCCGTAGCCGA-
1 GCACTGTGTGTGCGAGATCAGTTGTTGAG
23293908 GCACTGTGTGTGCGAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGATCAGTTGTTGAG
* ****
23293937 GCACTGTGTGTGCGAGTTCCA-TAACCGA-
1 GCACTGTGTGTGCGAGAT-CAGTTGTTGAG
*
23293965 GCACTGTGTATGCGAGATC---------G
1 GCACTGTGTGTGCGAGATCAGTTGTTGAG
*
23293985 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCAGTTGTTGAG
23294014 GCACTGTGTGTGCGAG
1 GCACTGTGTGTGCGAG
23294030 TTCCGTAACC
Statistics
Matches: 185, Mismatches: 38, Indels: 26
0.74 0.15 0.10
Matches are distributed among these distances:
20 18 0.10
27 1 0.01
28 58 0.31
29 106 0.57
30 2 0.01
ACGTcount: A:0.17, C:0.18, G:0.36, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCAGTTGTTGAG
Found at i:23293856 original size:57 final size:57
Alignment explanation
Indices: 23293794--23293983 Score: 317
Period size: 57 Copynumber: 3.3 Consensus size: 57
23293784 GGTTGTTGAG
* *
23293794 GCACTGTGTGTGCGAGATCAGTTGTTGAGGCATTGTGTGTACGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCGA
* * *
23293851 ACACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAGCCGA
1 GCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCGA
*
23293908 GCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTCCATAACCGA
1 GCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCGA
*
23293965 GCACTGTGTATGCGAGATC
1 GCACTGTGTGTGCGAGATC
23293984 GGCACTGTGT
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 123 1.00
ACGTcount: A:0.18, C:0.19, G:0.34, T:0.28
Consensus pattern (57 bp):
GCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:23293880 original size:86 final size:86
Alignment explanation
Indices: 23293735--23293895 Score: 277
Period size: 86 Copynumber: 1.9 Consensus size: 86
23293725 AAGTGAACAT
** *
23293735 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTATGTGCGAGATCGGTTGTTGAGGCACTG
1 AGGCACTGTGTGTACGAGTTCCGTAACCGAACACTGTATGTGCGAGATCGGTTGTTGAGGCACTG
23293800 TGTGTGCGAGATCAGTTGTTG
66 TGTGTGCGAGATCAGTTGTTG
* *
23293821 AGGCATTGTGTGTACGAGTTCCGTAACCGAACACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
1 AGGCACTGTGTGTACGAGTTCCGTAACCGAACACTGTATGTGCGAGATCGGTTGTTGAGGCACTG
23293886 TGTGTGCGAG
66 TGTGTGCGAG
23293896 TTCCGTAGCC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 70 1.00
ACGTcount: A:0.18, C:0.17, G:0.36, T:0.29
Consensus pattern (86 bp):
AGGCACTGTGTGTACGAGTTCCGTAACCGAACACTGTATGTGCGAGATCGGTTGTTGAGGCACTG
TGTGTGCGAGATCAGTTGTTG
Found at i:23293978 original size:28 final size:28
Alignment explanation
Indices: 23293737--23293980 Score: 132
Period size: 29 Copynumber: 8.6 Consensus size: 28
23293727 GTGAACATAG
* * *
23293737 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCATAGCCGA
* * ** * **
23293765 GCACTGTATGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCATAGCCGA
* * **
23293793 GGCACTGTGTGTGCGAGAT-CAGTTGTTGA
1 -GCACTGTGTGTGCGAGTTCCA-TAGCCGA
* * * *
23293822 GGCATTGTGTGTACGAGTTCCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCATAGCCGA
* * ** * **
23293851 ACACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCATAGCCGA
*
23293879 GGCACTGTGTGTGCGAGTTCCGTAGCCGA
1 -GCACTGTGTGTGCGAGTTCCATAGCCGA
* * **
23293908 GCACTGTGTGTGCGAGAT-CAGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCA-TAGCCGA
*
23293936 GGCACTGTGTGTGCGAGTTCCATAACCGA
1 -GCACTGTGTGTGCGAGTTCCATAGCCGA
*
23293965 GCACTGTGTATGCGAG
1 GCACTGTGTGTGCGAG
23293981 ATCGGCACTG
Statistics
Matches: 164, Mismatches: 45, Indels: 14
0.74 0.20 0.06
Matches are distributed among these distances:
27 1 0.01
28 75 0.46
29 85 0.52
30 3 0.02
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCATAGCCGA
Found at i:23293990 original size:20 final size:20
Alignment explanation
Indices: 23293965--23294005 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
23293955 CCATAACCGA
23293965 GCACTGTGTATGCGAGATCG
1 GCACTGTGTATGCGAGATCG
*
23293985 GCACTGTGTGTGCGAGATCG
1 GCACTGTGTATGCGAGATCG
23294005 G
1 G
23294006 TTGTTGAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.39, T:0.24
Consensus pattern (20 bp):
GCACTGTGTATGCGAGATCG
Found at i:23293996 original size:77 final size:77
Alignment explanation
Indices: 23293908--23294050 Score: 259
Period size: 77 Copynumber: 1.9 Consensus size: 77
23293898 CCGTAGCCGA
*
23293908 GCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTCCATAACCGAGCACTGTG
1 GCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTCCATAACCAAGCACTGTG
23293973 TATGCGAGATCG
66 TATGCGAGATCG
* *
23293985 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTG
1 GCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTCCATAACCAAGCACTGTG
23294050 T
66 T
23294051 GTACAAGATC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 63 1.00
ACGTcount: A:0.18, C:0.20, G:0.34, T:0.28
Consensus pattern (77 bp):
GCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTCCATAACCAAGCACTGTG
TATGCGAGATCG
Found at i:23299058 original size:28 final size:28
Alignment explanation
Indices: 23299018--23299096 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
23299008 GCAATCAAAT
* * *
23299018 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
23299046 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
23299074 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
23299097 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:23308371 original size:94 final size:93
Alignment explanation
Indices: 23308131--23308403 Score: 304
Period size: 94 Copynumber: 2.9 Consensus size: 93
23308121 GGTAAAGTGT
* * * *
23308131 CGATGCCATGTCCCAAGCATGGTCTTACACTAACTCTCGCATATCTGTGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACT-A-GCTCACATATGTG-GCCGATG-CATGTCCCA
* *
23308196 GACATGGTCTTATACT-G-ACACATCTCATAGC
62 GACAT-GTCTTACACTAGCTCACATCTCATAGC
* * * * * * *
23308227 CGATG-CATGTCTCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAAAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT-GTGGCCGATGCATGTCCCAGAC
*
23308290 ATGTCTTACACTAGCTCTCATCTCA-ATGC
65 ATGTCTTACACTAGCTCACATCTCATA-GC
*
23308319 CGATGCCATGTCCCAAACATGGTTTTACACTAGCTCACATAATGTGGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-ATGTGGCCGATGCATGTCCCAGAC
23308384 ATGTCTTACACTAGCTCACA
65 ATGTCTTACACTAGCTCACA
23308404 CAAGTGACCC
Statistics
Matches: 147, Mismatches: 23, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
90 9 0.06
91 15 0.10
92 28 0.19
93 13 0.09
94 65 0.44
95 12 0.08
96 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (93 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATGTGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCTCACATCTCATAGC
Found at i:23308402 original size:46 final size:47
Alignment explanation
Indices: 23308131--23308403 Score: 224
Period size: 46 Copynumber: 5.8 Consensus size: 47
23308121 GGTAAAGTGT
* * *
23308131 CGATGCCATGTCCCA-AGCATGGTCTTACACTAACTCTCGCATATCTGTGC
1 CGATGCCATGTCCCAGA-CATGGTCTTACACT-A-GCTCACATATGTG-GC
* * * * *
23308181 CGATGCCATGTCCCAGACATGGTCTTATACT-G-ACACATCTCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT-GTGGC
* * * * *
23308227 CGATG-CATGTCTCAGACAT-GTCTTACACTGGCTTACATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT-GTGGC
* * * *
23308273 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATCTCAAT-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT--GTGGC
* *
23308319 CGATGCCATGTCCCAAACATGGTTTTACACTAGCTCACATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATGTGGC
23308367 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
23308404 CAAGTGACCC
Statistics
Matches: 186, Mismatches: 28, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
44 9 0.05
45 14 0.08
46 80 0.43
47 29 0.16
48 24 0.13
49 1 0.01
50 28 0.15
51 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATGTGGC
Found at i:23311637 original size:9 final size:9
Alignment explanation
Indices: 23311619--23311648 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
23311609 TTACCTTTAC
23311619 TAAAAATTT
1 TAAAAATTT
*
23311628 TAAAATTTT
1 TAAAAATTT
23311637 TAAAAATTT
1 TAAAAATTT
23311646 TAA
1 TAA
23311649 CTGAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
TAAAAATTT
Found at i:23314914 original size:28 final size:28
Alignment explanation
Indices: 23314872--23314929 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
23314862 CTAGTTTCTC
* *
23314872 TTATCCTAACGAAC-TTACCCTGTGTTTA
1 TTATCCCAACAAACTTTA-CCTGTGTTTA
*
23314900 TTATCCCAACAAACTTTATCTGTGTTTA
1 TTATCCCAACAAACTTTACCTGTGTTTA
23314928 TT
1 TT
23314930 GTCCTAGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 23 0.88
29 3 0.12
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (28 bp):
TTATCCCAACAAACTTTACCTGTGTTTA
Found at i:23318150 original size:18 final size:19
Alignment explanation
Indices: 23318118--23318153 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
23318108 TATTTTATAT
23318118 TTAAAATAATAAATATAAC
1 TTAAAATAATAAATATAAC
*
23318137 TTAAAAT-ATTAATATAA
1 TTAAAATAATAAATATAA
23318154 AAATATTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
TTAAAATAATAAATATAAC
Found at i:23318328 original size:79 final size:80
Alignment explanation
Indices: 23318239--23318397 Score: 209
Period size: 83 Copynumber: 2.0 Consensus size: 80
23318229 TTCAAACAAG
* *
23318239 AAAATCATTCTGTCAACAAAAA-TCCAATAAT-AAAAAA-CTTTGAAACATTACTAAATAATCTC
1 AAAATCATTCTGTCAA-AAAAATTCCAATAATAAAAAAATCTTTGAAACATCACTAAATAAT-AC
23318301 CAAA-GTTAAAAAAAAT
64 CAAAGGTTAAAAAAAAT
* *
23318317 AAAATTCATTCTGTCAAAAAAATTCTAATAATAAAAAAAAATCTTTGAAACATCACTGAATAATA
1 AAAA-TCATTCTGTCAAAAAAATTCCAATAAT--AAAAAAATCTTTGAAACATCACTAAATAATA
23318382 CCAAAGGTTAAAAAAA
63 CCAAAGGTTAAAAAAA
23318398 CATTCTGTCA
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
78 9 0.13
79 20 0.29
82 11 0.16
83 30 0.43
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.26
Consensus pattern (80 bp):
AAAATCATTCTGTCAAAAAAATTCCAATAATAAAAAAATCTTTGAAACATCACTAAATAATACCA
AAGGTTAAAAAAAAT
Found at i:23318701 original size:17 final size:17
Alignment explanation
Indices: 23318679--23318722 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 17
23318669 GCTAACAAAT
23318679 AATTTAAAATT-AATAAA
1 AATTTAAAATTCAA-AAA
23318696 AATTTAAAATTCAAAAA
1 AATTTAAAATTCAAAAA
23318713 AATTATAAAA
1 AATT-TAAAA
23318723 AGTAAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 18 0.72
18 7 0.28
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
AATTTAAAATTCAAAAA
Found at i:23323563 original size:21 final size:21
Alignment explanation
Indices: 23323516--23323555 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23323506 AATCAAATAC
* *
23323516 TCAATACTTAATCCTCAATCA
1 TCAATTCTCAATCCTCAATCA
*
23323537 TAAATTCTCAATCCTCAAT
1 TCAATTCTCAATCCTCAAT
23323556 TTTCAATTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.35
Consensus pattern (21 bp):
TCAATTCTCAATCCTCAATCA
Done.