Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 78 of 333
Found at i:23886834 original size:53 final size:52
Alignment explanation
Indices: 23886751--23886867 Score: 144
Period size: 53 Copynumber: 2.2 Consensus size: 52
23886741 TTCCACGAAG
* * * * *
23886751 GCTTCCATCTCTTAGTTCGCCACAAGGGCTTCTATTTCTTAAATCACCACAAAT
1 GCTTCCAT-TTTTAGATCGCCACAAAGGCTTCCATTTCATAAATCACCAC-AAT
* *
23886805 GCTTCCATTTTTAGATCTCCACAAAGGCTTCCATTTCATAGATCACCACAAT
1 GCTTCCATTTTTAGATCGCCACAAAGGCTTCCATTTCATAAATCACCACAAT
23886857 GACTTCCATTT
1 G-CTTCCATTT
23886868 CAGATACGTT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
52 4 0.07
53 43 0.78
54 8 0.15
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.34
Consensus pattern (52 bp):
GCTTCCATTTTTAGATCGCCACAAAGGCTTCCATTTCATAAATCACCACAAT
Found at i:23886869 original size:27 final size:27
Alignment explanation
Indices: 23886750--23886868 Score: 125
Period size: 27 Copynumber: 4.4 Consensus size: 27
23886740 TTTCCACGAA
* * * *
23886750 GGCTTCCATCTCTTAGTTCGCCACAAG
1 GGCTTCCATTTCTTAGATCACCACAAT
* *
23886777 GGCTTCTATTTCTTAAATCACCACAAAT
1 GGCTTCCATTTCTTAGATCACCAC-AAT
* *
23886805 -GCTTCCATTT-TTAGATCTCCACAAA
1 GGCTTCCATTTCTTAGATCACCACAAT
*
23886830 GGCTTCCATTTCATAGATCACCACAAT
1 GGCTTCCATTTCTTAGATCACCACAAT
*
23886857 GACTTCCATTTC
1 GGCTTCCATTTC
23886869 AGATACGTTA
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
25 2 0.03
26 20 0.27
27 51 0.68
28 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (27 bp):
GGCTTCCATTTCTTAGATCACCACAAT
Found at i:23886894 original size:53 final size:53
Alignment explanation
Indices: 23886770--23886894 Score: 139
Period size: 53 Copynumber: 2.4 Consensus size: 53
23886760 TCTTAGTTCG
* * *
23886770 CCACAAGGGCTTCTATTTCTTAAATCACCACAAATGCTTCCATTTTTAGATCT
1 CCACAAAGGCTTCTATTTCATAAATCACCACAAATGCTTCCATTTTCAGATCT
* *
23886823 CCACAAAGGCTTCCATTTCATAGATCACCAC-AATGACTTCCA-TTTCAGATACGT
1 CCACAAAGGCTTCTATTTCATAAATCACCACAAATG-CTTCCATTTTCAGAT-C-T
* *
23886877 -TACAAAGGCTTTTATTTC
1 CCACAAAGGCTTCTATTTC
23886895 CTGATGTGTT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
52 11 0.18
53 49 0.80
54 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.34
Consensus pattern (53 bp):
CCACAAAGGCTTCTATTTCATAAATCACCACAAATGCTTCCATTTTCAGATCT
Found at i:23887058 original size:23 final size:23
Alignment explanation
Indices: 23887031--23887077 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
23887021 TAACCCGCCA
*
23887031 GCCATAGTCTTAAAGGATATGGT
1 GCCATAGCCTTAAAGGATATGGT
* * *
23887054 GCCATGGCCTTATATGATATGGT
1 GCCATAGCCTTAAAGGATATGGT
23887077 G
1 G
23887078 ACATGGCCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.32
Consensus pattern (23 bp):
GCCATAGCCTTAAAGGATATGGT
Found at i:23891787 original size:20 final size:20
Alignment explanation
Indices: 23891762--23891806 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
23891752 CACTCCAAAT
23891762 TGTGGAAAAGCCACCAATAA
1 TGTGGAAAAGCCACCAATAA
* ** *
23891782 TGTGGACAAGCTGCTAATAA
1 TGTGGAAAAGCCACCAATAA
23891802 TGTGG
1 TGTGG
23891807 TCGAGCCACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.22
Consensus pattern (20 bp):
TGTGGAAAAGCCACCAATAA
Found at i:23896208 original size:10 final size:10
Alignment explanation
Indices: 23896186--23896232 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
23896176 CAATCTGTCG
*
23896186 AAAA-TAATA
1 AAAATTAATT
23896195 AAAATTAATT
1 AAAATTAATT
*
23896205 AAAATTTGATAT
1 AAAA-TTAAT-T
23896217 AAAATTAATT
1 AAAATTAATT
23896227 AAAATT
1 AAAATT
23896233 CAACAAGTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 15 0.47
11 8 0.25
12 5 0.16
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (10 bp):
AAAATTAATT
Found at i:23898326 original size:37 final size:37
Alignment explanation
Indices: 23898262--23898348 Score: 99
Period size: 37 Copynumber: 2.3 Consensus size: 37
23898252 TTACAAGATA
23898262 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
23898299 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
23898336 AACATCGATTATA
1 AA-ATC-ATTATA
23898349 GAAAAACTCA
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
36 4 0.09
37 30 0.68
38 4 0.09
39 6 0.14
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:23903827 original size:27 final size:26
Alignment explanation
Indices: 23903796--23903879 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 26
23903786 TTTAACTAGT
23903796 GAACCCTAGTTAGCCAAACCAACTGGC
1 GAACCCTAGTTA-CCAAACCAACTGGC
* * * *
23903823 GAACCCCAGTCCACCAAACCAATTGGT
1 GAACCCTAGT-TACCAAACCAACTGGC
* * *
23903850 GAACCCTGGTTCTCCAAATCAACTGGC
1 GAACCCTAGTT-ACCAAACCAACTGGC
23903877 GAA
1 GAA
23903880 TGCCATTCTA
Statistics
Matches: 44, Mismatches: 11, Indels: 4
0.75 0.19 0.07
Matches are distributed among these distances:
27 43 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.33, G:0.18, T:0.17
Consensus pattern (26 bp):
GAACCCTAGTTACCAAACCAACTGGC
Found at i:23903876 original size:54 final size:54
Alignment explanation
Indices: 23903794--23903909 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
23903784 ACTTTAACTA
*
23903794 GTGAACCCTAGTTAGCCAAACCAACTGGCGAACCCCAGTCCACCAAACCAATTG
1 GTGAACCCTAGTTAGCCAAACCAACTGGCGAACCCCAGTCCACAAAACCAATTG
* ** * ** * *
23903848 GTGAACCCTGGTTCTCCAAATCAACTGGCGAATGCCATTCTACAAAACCAATTG
1 GTGAACCCTAGTTAGCCAAACCAACTGGCGAACCCCAGTCCACAAAACCAATTG
*
23903902 GCGAACCC
1 GTGAACCC
23903910 CCTTACCACA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.32, C:0.33, G:0.17, T:0.18
Consensus pattern (54 bp):
GTGAACCCTAGTTAGCCAAACCAACTGGCGAACCCCAGTCCACAAAACCAATTG
Found at i:23909492 original size:9 final size:9
Alignment explanation
Indices: 23909478--23909502 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
23909468 TGGATTATTT
23909478 TGAATGAAA
1 TGAATGAAA
23909487 TGAATGAAA
1 TGAATGAAA
23909496 TGAATGA
1 TGAATGA
23909503 TTGAATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (9 bp):
TGAATGAAA
Found at i:23909898 original size:42 final size:43
Alignment explanation
Indices: 23909835--23909939 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 43
23909825 GATTTGAGAT
* *
23909835 TTACATGTAAGACCATGTCTGGGACATAGGCATCG-TATCTG-A
1 TTACATGTAAGACCATATCTGGGACAGAGGCATCGATA-CTGAA
* * * *
23909877 TTTCGTGTAAGACCCTATCTGGGATAGAGGCATCGATACTGAA
1 TTACATGTAAGACCATATCTGGGACAGAGGCATCGATACTGAA
*
23909920 TTACATGTAAGACCACATCT
1 TTACATGTAAGACCATATCT
23909940 AGGATGTTAG
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
42 32 0.63
43 19 0.37
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (43 bp):
TTACATGTAAGACCATATCTGGGACAGAGGCATCGATACTGAA
Found at i:23920377 original size:13 final size:13
Alignment explanation
Indices: 23920359--23920383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23920349 AGCCAAGTAT
23920359 CACACGGCCATGG
1 CACACGGCCATGG
23920372 CACACGGCCATG
1 CACACGGCCATG
23920384 TCTGTTGGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (13 bp):
CACACGGCCATGG
Found at i:23921906 original size:27 final size:27
Alignment explanation
Indices: 23921875--23921968 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
23921865 AGAGATCGCT
*
23921875 ACAAATGCTTTCATTTCATGATTTGCC
1 ACAAAGGCTTTCATTTCATGATTTGCC
* *
23921902 ACAAAGGCTTTCTTTTCATGGTTTGCC
1 ACAAAGGCTTTCATTTCATGATTTGCC
* *
23921929 ACAAAGGC---CATTCCAT-ATTACGCC
1 ACAAAGGCTTTCATTTCATGATT-TGCC
23921953 ACAAAGGCTTTC-TTTC
1 ACAAAGGCTTTCATTTC
23921969 TCTATCATTT
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
23 2 0.04
24 17 0.31
26 3 0.05
27 33 0.60
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.35
Consensus pattern (27 bp):
ACAAAGGCTTTCATTTCATGATTTGCC
Found at i:23922849 original size:6 final size:6
Alignment explanation
Indices: 23922838--23923023 Score: 147
Period size: 6 Copynumber: 30.8 Consensus size: 6
23922828 AACCAAAATG
*
23922838 AGAATC AGAATC AGAATC AGTAA-C AGAATC A-AATC AGAATC A-ATGTTC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA--ATC
* *
23922886 -GTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
23922934 AGAATC AGTAA-C AGAATC AGAACC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
23922982 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
23923024 GTGAATGCAA
Statistics
Matches: 145, Mismatches: 16, Indels: 38
0.73 0.08 0.19
Matches are distributed among these distances:
5 17 0.12
6 114 0.79
7 11 0.08
8 3 0.02
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:23922993 original size:85 final size:84
Alignment explanation
Indices: 23922838--23923023 Score: 318
Period size: 85 Copynumber: 2.2 Consensus size: 84
23922828 AACCAAAATG
* * *
23922838 AGAATCAGAATCAGAATCAGTAACAGAATCAAATCAGAATCAATGTTCGTAACAGAATCAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATCAAACCAGAATCAATATTAGTAACAGAATCAGAATC
*
23922903 AGAATCAGAATTAGGTGAC
66 AGAATCAGAATTACGTGAC
*
23922922 AGAATCAGAATCAGAATCAGTAACAGAATCAGAACCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCA-AACCAGAATCAATATTAGTAACAGAATCAGAAT
23922987 CAGAATCAGAATTACGTGAC
65 CAGAATCAGAATTACGTGAC
23923007 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
23923024 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
84 31 0.32
85 65 0.68
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (84 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAAACCAGAATCAATATTAGTAACAGAATCAGAATC
AGAATCAGAATTACGTGAC
Found at i:23923177 original size:27 final size:25
Alignment explanation
Indices: 23923140--23923204 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 25
23923130 AGCATGGCTG
23923140 CCAGAACAGATATCGTGACAGAGCCA
1 CCAGAACAGATATCGTGACA-AGCCA
* *
23923166 CCAGATACAGATATTGTGGCAAGCCA
1 CCAGA-ACAGATATCGTGACAAGCCA
23923192 CCAGAATCAGATA
1 CCAGAA-CAGATA
23923205 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 1 0.03
26 21 0.60
27 13 0.37
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (25 bp):
CCAGAACAGATATCGTGACAAGCCA
Found at i:23923209 original size:26 final size:26
Alignment explanation
Indices: 23923140--23923213 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 26
23923130 AGCATGGCTG
*
23923140 CCAGAA-CAGAT-ATCGTGACAGAGCCA
1 CCAGAATCAGATAAT-GTGGCA-AGCCA
*
23923166 CCAG-ATACAGATATTGTGGCAAGCCA
1 CCAGAAT-CAGATAATGTGGCAAGCCA
23923192 CCAGAATCAGATAATGTGGCAA
1 CCAGAATCAGATAATGTGGCAA
23923214 ACCCACCTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
25 1 0.02
26 27 0.66
27 12 0.29
28 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAATCAGATAATGTGGCAAGCCA
Found at i:23923601 original size:27 final size:26
Alignment explanation
Indices: 23923522--23923604 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
23923512 TCGATTGGTT
* * *
23923522 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
23923548 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
23923575 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
23923602 AAC
1 AAC
23923605 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:23923918 original size:79 final size:79
Alignment explanation
Indices: 23923811--23924011 Score: 235
Period size: 79 Copynumber: 2.5 Consensus size: 79
23923801 ATCGTAATTT
* * * * *
23923811 TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAG
1 TACCCTACAGGGGTAT-TTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAG
23923876 GGTATTTC-GATAATTC
65 GGTATTTCGGA-AA-TC
* * * * *
23923892 TACCCTA-AGGGGTATTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGG
1 TACCCTACAGGGGTATTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGG
23923956 GTATTTCGGAAATC
66 GTATTTCGGAAATC
* **
23923970 TACCCTACAGGGGTATTTCAGTAATTCTACATTACAGGGGTA
1 TACCCTACAGGGGTATTT-GGTAATTCTACCCTACAGGGGTA
23924012 AAACGGTAAT
Statistics
Matches: 101, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
78 9 0.09
79 60 0.59
80 26 0.26
81 6 0.06
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (79 bp):
TACCCTACAGGGGTATTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGG
GTATTTCGGAAATC
Found at i:23924006 original size:27 final size:27
Alignment explanation
Indices: 23923804--23924011 Score: 251
Period size: 27 Copynumber: 7.8 Consensus size: 27
23923794 GGGCAAAATC
* * * *
23923804 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
23923831 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
23923858 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
23923885 ATAATTCTACCCTA-AGGGGTATTT-G
1 GTAATTCTACCCTACAGGGGTATTTCG
* * * *
23923910 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
23923937 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
23923964 G-AAATCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
**
23923990 GTAATTCTACATTACAGGGGTA
1 GTAATTCTACCCTACAGGGGTA
23924012 AAACGGTAAT
Statistics
Matches: 156, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
25 13 0.08
26 41 0.26
27 102 0.65
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:23924009 original size:53 final size:54
Alignment explanation
Indices: 23923804--23924011 Score: 271
Period size: 53 Copynumber: 3.9 Consensus size: 54
23923794 GGGCAAAATC
* * * *
23923804 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCG
*
23923858 GTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTA-AGGGGTATTT-G
1 GTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCG
* * *
23923910 GTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCG
* * **
23923964 G-AAATCTACCCTACAGGGGTATTTCAGTAATTCTACATTACAGGGGTA
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTA
23924012 AAACGGTAAT
Statistics
Matches: 136, Mismatches: 14, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
52 37 0.27
53 62 0.46
54 37 0.27
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCG
Found at i:23924073 original size:25 final size:26
Alignment explanation
Indices: 23924007--23924185 Score: 156
Period size: 26 Copynumber: 7.0 Consensus size: 26
23923997 TACATTACAG
*
23924007 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATT-TGTAAATCGA
23924034 GGGTAAAAC-GATAATTTGTAAA-CTGA
1 GGGTAAAACAG-TAATTTGTAAATC-GA
*
23924060 GGGT-AAACAGTAATTTGTAAATCAA
1 GGGTAAAACAGTAATTTGTAAATCGA
* * **
23924085 TGGTAAAACGGTAATTTACAAAT-GA
1 GGGTAAAACAGTAATTTGTAAATCGA
23924110 GGGTAAAACAGT-ATTT-TAAATCGA
1 GGGTAAAACAGTAATTTGTAAATCGA
** *
23924134 GGGT-AAATGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATT-TGTAAATCGA
* * *
23924160 AGGTAAAACGGTAATTCTTTAAATCG
1 GGGTAAAACAGTAATT-TGTAAATCG
23924186 GAGTATTTGG
Statistics
Matches: 128, Mismatches: 14, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
23 9 0.07
24 13 0.10
25 32 0.25
26 41 0.32
27 33 0.26
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (26 bp):
GGGTAAAACAGTAATTTGTAAATCGA
Found at i:23924090 original size:51 final size:51
Alignment explanation
Indices: 23924007--23924185 Score: 177
Period size: 51 Copynumber: 3.5 Consensus size: 51
23923997 TACATTACAG
* **
23924007 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTGTAAACTGA
1 GGGTAAAACAGTAATT-TGTAAATCGAGGGTAAAACGATAATTTACAAA-TGA
* * *
23924060 GGGT-AAACAGTAATTTGTAAATCAATGGTAAAACGGTAATTTACAAATGA
1 GGGTAAAACAGTAATTTGTAAATCGAGGGTAAAACGATAATTTACAAATGA
* * *
23924110 GGGTAAAACAGT-ATTT-TAAATCGAGGGT-AAATGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTGTAAATCGAGGGTAAAACGATAATT-TACAAAT-GA
* * *
23924160 AGGTAAAACGGTAATTCTTTAAATCG
1 GGGTAAAACAGTAATT-TGTAAATCG
23924186 GAGTATTTGG
Statistics
Matches: 108, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
48 10 0.09
49 16 0.15
50 23 0.21
51 37 0.34
52 11 0.10
53 11 0.10
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (51 bp):
GGGTAAAACAGTAATTTGTAAATCGAGGGTAAAACGATAATTTACAAATGA
Found at i:23926197 original size:6 final size:6
Alignment explanation
Indices: 23926182--23926374 Score: 116
Period size: 6 Copynumber: 31.8 Consensus size: 6
23926172 AACCAAAATG
* *
23926182 AGAATT AGAATC AGAATC AGTAA-C AGAATC ATAATC AGAAT- A-AATGTTC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAA---TC
* * * *
23926231 -GTAA-C AGAATC AGAATC AAAATA AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
23926279 AAAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
23926327 AGAATT AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
23926375 GTGAATGCAA
Statistics
Matches: 145, Mismatches: 22, Indels: 40
0.70 0.11 0.19
Matches are distributed among these distances:
4 2 0.01
5 12 0.08
6 117 0.81
7 10 0.07
8 2 0.01
9 2 0.01
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:23926222 original size:30 final size:30
Alignment explanation
Indices: 23926182--23926346 Score: 150
Period size: 30 Copynumber: 5.7 Consensus size: 30
23926172 AACCAAAATG
*
23926182 AGAATTAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
*
23926212 ATAATCAGAAT-A-AATGTTC-GTAACAGAATC
1 AGAATCAGAATCAGAA---TCAGTAACAGAATC
* * *
23926242 AGAATCAAAATAAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATCA-GTAACAGAATC
*
23926267 AGAATCAGAATCAAAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
* *
23926297 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
*
23926327 AGAATTAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
23926347 AATTACGTGA
Statistics
Matches: 107, Mismatches: 15, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
24 2 0.02
25 16 0.15
26 1 0.01
27 1 0.01
28 3 0.03
29 3 0.03
30 74 0.69
31 5 0.05
32 2 0.02
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGTAACAGAATC
Found at i:23926361 original size:85 final size:85
Alignment explanation
Indices: 23926182--23926374 Score: 224
Period size: 85 Copynumber: 2.2 Consensus size: 85
23926172 AACCAAAATG
* * * *
23926182 AGAATTAGAATCAGAATCAGTAACAGAATCATAATCAGAATAAATGTTCGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATAAATATTAGTAACAGAATCAGAAT
* *
23926247 CAAAATAAGAATTAGGTGAC
66 CAAAATAAGAATCAGATGAC
* * *
23926267 AGAATCAGAATCAAAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATAAATATTAGTAACAGAATCAGAAT
* * *
23926332 TAGAATCAGAATCAGAATTACGTGAC
66 CAAAATAAGAATCAG----A--TGAC
23926358 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
23926375 GTGAATGCAA
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
85 69 0.78
91 20 0.22
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATAAATATTAGTAACAGAATCAGAAT
CAAAATAAGAATCAGATGAC
Found at i:23926528 original size:27 final size:26
Alignment explanation
Indices: 23926491--23926556 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
23926481 AGCATGGCTG
*
23926491 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
23926517 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
23926544 CCAGAATCAGATA
1 CCAGAA-CAGATA
23926557 CTGTGGCACA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:23926561 original size:27 final size:26
Alignment explanation
Indices: 23926491--23926564 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
23926481 AGCATGGCTG
* *
23926491 CCAGAA-CAGATATCGTGACAGAGTCA
1 CCAGAATCAGATAT-GTGGCAGAGCCA
23926517 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATA-TGTGGCAGAGCCA
23926544 CCAGAATCAGATACTGTGGCA
1 CCAGAATCAGATA-TGTGGCA
23926565 CAAAGCCATA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
25 1 0.02
26 4 0.10
27 33 0.80
28 3 0.07
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAATCAGATATGTGGCAGAGCCA
Found at i:23926752 original size:22 final size:22
Alignment explanation
Indices: 23926704--23926762 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
23926694 GTAAATACGT
*
23926704 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
23926726 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
23926748 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
23926763 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:23927167 original size:27 final size:27
Alignment explanation
Indices: 23927131--23927326 Score: 227
Period size: 27 Copynumber: 7.4 Consensus size: 27
23927121 GGGCAAAATC
* *
23927131 GTAATT-TACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
23927157 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
23927184 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * * *
23927211 ATAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
23927238 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
23927265 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
23927291 GAAATCCTACCCTAC-AGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCG
23927317 GTAATTCTAC
1 GTAATTCTAC
23927327 ATTATAGGGT
Statistics
Matches: 145, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
25 9 0.06
26 26 0.18
27 110 0.76
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCG
Found at i:23927202 original size:54 final size:54
Alignment explanation
Indices: 23927131--23927335 Score: 265
Period size: 54 Copynumber: 3.9 Consensus size: 54
23927121 GGGCAAAATC
* * * *
23927131 GTAATT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCG
* *
23927184 GTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTATAGGGGTATTTCG
* *
23927238 GTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCG
* * **
23927291 GAAATCCTACCCTAC-AGGGTATTTCAGTAATTCTACATTATAGGG
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGG
23927336 TAAAACAATA
Statistics
Matches: 134, Mismatches: 15, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
52 28 0.21
53 17 0.13
54 88 0.66
55 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCG
Found at i:23927373 original size:27 final size:27
Alignment explanation
Indices: 23927332--23927680 Score: 422
Period size: 27 Copynumber: 13.0 Consensus size: 27
23927322 TCTACATTAT
**
23927332 AGGGTAAAACAATAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * * *
23927359 AGAGTAAAACGATAATTTTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTATAAATC-G
* * * * *
23927386 ACGGTAAACCAGTAATTCTGTAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
23927413 AGGGTAAAACGGTAATT-T-TACAATCG
1 AGGGTAAAACGGTAATTCTATA-AATCG
*
23927439 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
23927466 AGGGTAAAACGATAATTCTATAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
*
23927493 AGGGTAAAACAGTAATTCTATAAA-CTG
1 AGGGTAAAACGGTAATTCTATAAATC-G
*
23927520 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
23927547 AGGGTAAAACGGTAATTCTATAAA-CTG
1 AGGGTAAAACGGTAATTCTATAAATC-G
*
23927574 AGGGTAAAACGGTAATT-TGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * *
23927600 AGGGTAAAACGATAATTTTAAAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
23927627 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
23927654 AGGGTAAAACGGTAAATCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
23927681 GGAGTACTTT
Statistics
Matches: 278, Mismatches: 34, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.01
26 47 0.17
27 225 0.81
28 4 0.01
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTATAAATCG
Found at i:23927680 original size:134 final size:134
Alignment explanation
Indices: 23927332--23927680 Score: 504
Period size: 134 Copynumber: 2.6 Consensus size: 134
23927322 TCTACATTAT
* * * * * * *
23927332 AGGGTAAAACAATAATTCTATAAATCGAGAGTAAAACGATAATTTTGTAAACTGACGGTAAACCA
1 AGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACG
* * *
23927397 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAATCGAGGGTAAAACGGTAATTCTGTAA
66 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAAACGAGGGTAAAACGGTAATTCTGTAA
23927462 ATCG
131 ATCG
* * *
23927466 AGGGTAAAACGATAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACG
1 AGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACG
*
23927531 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGGTAAAACGGTAATT-TGTA
66 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAAAC-GAGGGTAAAACGGTAATTCTGTA
23927595 AATCG
130 AATCG
* *
23927600 AGGGTAAAACGATAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAA-TCGAGGGTAAAAC
1 AGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACT-GAGGGTAAAAC
* *
23927664 GGTAAATCTATAAATCG
65 GGTAATTCTGTAAATCG
23927681 GGAGTACTTT
Statistics
Matches: 192, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
133 1 0.01
134 173 0.90
135 18 0.09
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (134 bp):
AGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACG
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAAACGAGGGTAAAACGGTAATTCTGTAA
ATCG
Found at i:23934262 original size:105 final size:104
Alignment explanation
Indices: 23934065--23934344 Score: 375
Period size: 105 Copynumber: 2.7 Consensus size: 104
23934055 GTATATGCAC
* * * ** * *
23934065 TAGTGGCGTTTTATATAAAACGCAGCAATATTTCAGCATTAGCGGCGTTTGCCATAAAACGCCGC
1 TAGTGGCGTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCGC
*
23934130 TAAATTGTTGACCAAAACGGCGTCGTTATAGAGG-GGCAT
66 AAAATTGTTGACCAAAACGGCGTCGTTAT-GAGGAGGCAT
*
23934169 TAGTGGCGTTTTAATGTAAAACGCCGCAATATATCATAATTAGCGGTGTTTGTCTTAAAACGCCG
1 TAGTGGCGTTTT-ATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCG
** *
23934234 CAAAATTGTTGAGGAAAACGGCGTCGTTATGTGGAGGCAT
65 CAAAATTGTTGACCAAAACGGCGTCGTTATGAGGAGGCAT
* *
23934274 TAGTGGCGTTTGTATGTAAAACGCCGCAATATATCATAATTAACGGCGTTTGT-TCTAAAACACC
1 TAGTGGCGTTT-TATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCT-TAAAACGCC
*
23934338 ACAAAAT
64 GCAAAAT
23934345 GTTATGTTAT
Statistics
Matches: 156, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
104 16 0.10
105 139 0.89
106 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (104 bp):
TAGTGGCGTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCGC
AAAATTGTTGACCAAAACGGCGTCGTTATGAGGAGGCAT
Found at i:23941547 original size:30 final size:29
Alignment explanation
Indices: 23941469--23941554 Score: 97
Period size: 30 Copynumber: 3.0 Consensus size: 29
23941459 CATAGTATCA
* * *
23941469 TATCTTGGGTTTCTTTATCCTGGATCTTTT
1 TATCTTGGATTTCTTTATTCTGGGT-TTTT
23941499 TAT-TCTGGATTTCTTTATTCTGGGTTTTT
1 TATCT-TGGATTTCTTTATTCTGGGTTTTT
23941528 CTATCTTGGATTTCTTTATT-T-GGTTTT
1 -TATCTTGGATTTCTTTATTCTGGGTTTT
23941555 CTTGTTATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
28 6 0.12
29 6 0.12
30 37 0.74
31 1 0.02
ACGTcount: A:0.10, C:0.13, G:0.16, T:0.60
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGGTTTTT
Found at i:23941555 original size:14 final size:15
Alignment explanation
Indices: 23941478--23941557 Score: 78
Period size: 15 Copynumber: 5.4 Consensus size: 15
23941468 ATATCTTGGG
*
23941478 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
23941493 TCTT-TTTATTCTGGA
1 T-TTCTTTATTCTGGA
*
23941508 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
23941523 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
23941538 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
23941552 TTTCTT
1 TTTCTT
23941558 GTTATTTTTA
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
14 15 0.27
15 35 0.64
16 5 0.09
ACGTcount: A:0.10, C:0.14, G:0.14, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:23943993 original size:46 final size:46
Alignment explanation
Indices: 23943940--23944115 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
23943930 TATTTGGGCA
23943940 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
23943986 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
23944033 TCTGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
23944079 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23944116 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.62
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23944095 original size:93 final size:93
Alignment explanation
Indices: 23943936--23944108 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
23943926 AGGATATTTG
* *
23943936 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
*
23944001 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
23944029 GGCATCTGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
23944094 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
23944109 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:23946748 original size:118 final size:115
Alignment explanation
Indices: 23946619--23946956 Score: 448
Period size: 118 Copynumber: 3.0 Consensus size: 115
23946609 TTTTGTTCTC
* *
23946619 TTTTATTTTATTTTCAAATTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTT
1 TTTTATTTTATTTT-AAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
23946684 TATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTATTTTATTTTAAATA
65 TATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTA-TTTATTTT-AATA
23946737 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTAA-ATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* **
23946802 CATTTAATTTGAATCACGAAAAATAA-TTT--CA----A--TA-TTT--TA
65 TATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTATTTATTTTAATA
23946841 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTAA-ATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * * *
23946906 CTTTTTTTTTTGAATCAAGAAAAATAATTTCAATATTTTATTATATTTTAA
65 -TATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTATT-TATTTTAA
23946957 CATTACCTAA
Statistics
Matches: 193, Mismatches: 12, Indels: 30
0.82 0.05 0.13
Matches are distributed among these distances:
104 67 0.35
105 21 0.11
106 2 0.01
107 3 0.02
108 3 0.02
111 1 0.01
112 1 0.01
115 4 0.02
116 3 0.02
117 5 0.03
118 83 0.43
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (115 bp):
TTTTATTTTATTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTT
ATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTATTTATTTTAATA
Found at i:23946799 original size:62 final size:61
Alignment explanation
Indices: 23946619--23946811 Score: 211
Period size: 62 Copynumber: 3.2 Consensus size: 61
23946609 TTTTGTTCTC
*
23946619 TTTTATTTTATTTTCAAATTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATA
1 TTTTATTTTATTTT-AAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATA
* * * * * *
23946681 TTTTATTTT-TTTTGAATCA-CGAA--AAA-TAATTTTAACATTT-TA-TTTTATTTTAAATA
1 TTTTATTTTATTTTAAATTACCTAATTAAATTAA-ATT-ATATTTAAAGTTTTATTTTAAATA
*
23946737 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATA
1 TTTTATTTTATTTTAA-ATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATA
* *
23946799 TTTCATTTAATTT
1 TTTTATTTTATTT
23946812 GAATCACGAA
Statistics
Matches: 105, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
56 25 0.24
57 11 0.10
58 8 0.08
59 6 0.06
60 8 0.08
61 10 0.10
62 37 0.35
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (61 bp):
TTTTATTTTATTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATA
Found at i:23946854 original size:104 final size:105
Alignment explanation
Indices: 23946735--23947014 Score: 441
Period size: 104 Copynumber: 2.7 Consensus size: 105
23946725 TTATTTTAAA
23946735 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
1 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
*
23946800 TTC-ATTTAATTTGAATCACGAAAAATAATTTCAATATTT
66 TTCTATTTAATTTGAATCAAGAAAAATAATTTCAATATTT
23946839 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
1 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
* **
23946904 TTCTTTTTTTTTTGAATCAAGAAAAATAATTTCAATATTT
66 TTCTATTTAATTTGAATCAAGAAAAATAATTTCAATATTT
* *
23946944 TA--TTA---TATTTTAACATTACCTAATTAAATTAAATTGTATTT-AGGTTTTACTTTAAATA-
1 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
*
23947002 TTCTATTTTATTT
66 TTCTATTTAATTT
23947015 CACTTTAATT
Statistics
Matches: 167, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
98 11 0.07
99 15 0.09
100 36 0.22
103 3 0.02
104 68 0.41
105 34 0.20
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.53
Consensus pattern (105 bp):
TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
TTCTATTTAATTTGAATCAAGAAAAATAATTTCAATATTT
Found at i:23947127 original size:9 final size:9
Alignment explanation
Indices: 23947113--23947220 Score: 82
Period size: 9 Copynumber: 12.1 Consensus size: 9
23947103 CCAGCAACTC
23947113 ACATAATTT
1 ACATAATTT
23947122 ACATAATTT
1 ACATAATTT
23947131 ACATAA--T
1 ACATAATTT
*
23947138 ACATAACTT
1 ACATAATTT
23947147 ACATAATTT
1 ACATAATTT
*
23947156 AAAGTTTGAATTT
1 ACA---T-AATTT
*
23947169 -CATAACTT
1 ACATAATTT
23947177 ACATAATTT
1 ACATAATTT
* *
23947186 ACATTACTT
1 ACATAATTT
23947195 ACATAA--T
1 ACATAATTT
* *
23947202 ACATGACTT
1 ACATAATTT
23947211 ACATAATTT
1 ACATAATTT
23947220 A
1 A
23947221 AAGATCAAAT
Statistics
Matches: 79, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
7 13 0.16
8 4 0.05
9 55 0.70
12 2 0.03
13 5 0.06
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.40
Consensus pattern (9 bp):
ACATAATTT
Found at i:23947142 original size:16 final size:16
Alignment explanation
Indices: 23947121--23947217 Score: 72
Period size: 16 Copynumber: 6.1 Consensus size: 16
23947111 TCACATAATT
*
23947121 TACATAATTTACATAA
1 TACATAACTTACATAA
23947137 TACATAACTTACATAA
1 TACATAACTTACATAA
** * ** *
23947153 TTTA-AAGTTTGA-AT
1 TACATAACTTACATAA
*
23947167 TTCATAACTTACATAA
1 TACATAACTTACATAA
*
23947183 TTTACATTACTTACATAA
1 --TACATAACTTACATAA
*
23947201 TACATGACTTACATAA
1 TACATAACTTACATAA
23947217 T
1 T
23947218 TTAAAGATCA
Statistics
Matches: 62, Mismatches: 15, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
14 4 0.06
15 10 0.16
16 34 0.55
18 14 0.23
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.39
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:23947151 original size:34 final size:34
Alignment explanation
Indices: 23947108--23947220 Score: 128
Period size: 34 Copynumber: 3.4 Consensus size: 34
23947098 GTTCACCAGC
*
23947108 AACTCACATAATTTACATAATTTACATAATACAT
1 AACTTACATAATTTACATAATTTACATAATACAT
* *
23947142 AACTTACATAATTTA-A-AGTTTGA-AT--TTCAT
1 AACTTACATAATTTACATAATTT-ACATAATACAT
* *
23947172 AACTTACATAATTTACATTACTTACATAATACAT
1 AACTTACATAATTTACATAATTTACATAATACAT
*
23947206 GACTTACATAATTTA
1 AACTTACATAATTTA
23947221 AAGATCAAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
30 19 0.29
31 2 0.03
32 10 0.15
33 2 0.03
34 32 0.49
ACGTcount: A:0.43, C:0.15, G:0.03, T:0.39
Consensus pattern (34 bp):
AACTTACATAATTTACATAATTTACATAATACAT
Found at i:23947232 original size:64 final size:64
Alignment explanation
Indices: 23947108--23947289 Score: 202
Period size: 64 Copynumber: 2.7 Consensus size: 64
23947098 GTTCACCAGC
* * * **
23947108 AACTCACATAATTTACATAATTTACATAATACATAACTTACATAATTTAAAGTTTGAATTTCAT
1 AACTTACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAT
* *
23947172 AACTTACATAATTTACATTACTTACATAATACATGACTTACATAATTTAAAGATCAAATTTCAT
1 AACTTACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAT
* * *
23947236 TACTTTATGTCATACATAATACATAACTTAAATAATTTACATAACTTACATAAT
1 AAC-TTA---CATA-AT-TTACATAACTTACATAA--TACATAACTTACATAAT
23947290 ACATAAATAT
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
64 59 0.60
65 3 0.03
68 4 0.04
69 2 0.02
70 14 0.14
72 16 0.16
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (64 bp):
AACTTACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAT
Found at i:23947279 original size:9 final size:9
Alignment explanation
Indices: 23947255--23947326 Score: 60
Period size: 9 Copynumber: 8.2 Consensus size: 9
23947245 TCATACATAA
23947255 TACATAACT
1 TACATAACT
* *
23947264 TAAATAATT
1 TACATAACT
23947273 TACATAACT
1 TACATAACT
23947282 TACATAA--
1 TACATAACT
*
23947289 TACATAA-A
1 TACATAACT
* * *
23947297 TATATATCA
1 TACATAACT
23947306 TATCATAACT
1 TA-CATAACT
23947316 TACATAACT
1 TACATAACT
23947325 TA
1 TA
23947327 ATTATACTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
7 7 0.14
8 5 0.10
9 33 0.65
10 6 0.12
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (9 bp):
TACATAACT
Found at i:23947289 original size:34 final size:34
Alignment explanation
Indices: 23947248--23947322 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
23947238 CTTTATGTCA
* *
23947248 TACATAATACATAACT-TAAATAATTTACATAACT
1 TACATAATACATAAATATAAATAATAT-CATAACT
* *
23947282 TACATAATACATAAATATATATCATATCATAACT
1 TACATAATACATAAATATAAATAATATCATAACT
23947316 TACATAA
1 TACATAA
23947323 CTTAATTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 29 0.81
35 7 0.19
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.35
Consensus pattern (34 bp):
TACATAATACATAAATATAAATAATATCATAACT
Found at i:23952151 original size:17 final size:15
Alignment explanation
Indices: 23952131--23952168 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
23952121 TTCTTTCAAA
23952131 TATTAATAACTTTCTAC
1 TATTAA-AA-TTTCTAC
23952148 TATT-AAATTTCTAC
1 TATTAAAATTTCTAC
23952162 TATTAAA
1 TATTAAA
23952169 TAATATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 11 0.55
15 4 0.20
16 1 0.05
17 4 0.20
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTAAAATTTCTAC
Found at i:23952160 original size:14 final size:14
Alignment explanation
Indices: 23952141--23952169 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
23952131 TATTAATAAC
23952141 TTTCTACTATTAAA
1 TTTCTACTATTAAA
23952155 TTTCTACTATTAAA
1 TTTCTACTATTAAA
23952169 T
1 T
23952170 AATATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTCTACTATTAAA
Found at i:23952350 original size:13 final size:14
Alignment explanation
Indices: 23952334--23952362 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23952324 TTCTAAATAT
23952334 TTATAA-TTTTTAA
1 TTATAATTTTTTAA
23952347 TTATAATTTTTTAA
1 TTATAATTTTTTAA
23952361 TT
1 TT
23952363 CAACTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTATAATTTTTTAA
Found at i:23952805 original size:21 final size:21
Alignment explanation
Indices: 23952779--23952840 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
23952769 TTAGAGCCGA
*
23952779 GGCAGCAAAGAGGGAGGCAGC
1 GGCAGCAGAGAGGGAGGCAGC
*
23952800 GGCAGCAGCGAGGGAGGCAGC
1 GGCAGCAGAGAGGGAGGCAGC
*
23952821 GGCAGCAGTGAGGGAGGCAG
1 GGCAGCAGAGAGGGAGGCAG
23952841 AGGTACGACC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.27, C:0.19, G:0.52, T:0.02
Consensus pattern (21 bp):
GGCAGCAGAGAGGGAGGCAGC
Found at i:23952826 original size:42 final size:42
Alignment explanation
Indices: 23952777--23952866 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
23952767 ACTTAGAGCC
* *
23952777 GAGGCAGCAAAGAGGGAGGCAGCGGCA-GCAGCGAGGGAGGCA
1 GAGGCAGCAAAGAGGGAGGCAGAGGCACG-ACCGAGGGAGGCA
* ** *
23952819 GCGGCAGCAGTGAGGGAGGCAGAGGTACGACCGAGGGAGGCA
1 GAGGCAGCAAAGAGGGAGGCAGAGGCACGACCGAGGGAGGCA
23952861 GAGGCA
1 GAGGCA
23952867 ACAGCAATGG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.50, T:0.02
Consensus pattern (42 bp):
GAGGCAGCAAAGAGGGAGGCAGAGGCACGACCGAGGGAGGCA
Found at i:23955841 original size:40 final size:40
Alignment explanation
Indices: 23955764--23956021 Score: 371
Period size: 40 Copynumber: 6.5 Consensus size: 40
23955754 AAACCAAGTA
* *
23955764 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
23955803 TCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23955843 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23955883 CCTTCGGGACTTAGTCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23955923 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23955963 CCTTCAGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTC-GGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
23956003 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23956022 TTATCATCTG
Statistics
Matches: 199, Mismatches: 15, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.08
40 181 0.91
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23958068 original size:104 final size:103
Alignment explanation
Indices: 23957912--23958551 Score: 615
Period size: 104 Copynumber: 6.3 Consensus size: 103
23957902 ATAACTTGTA
* * * *
23957912 GACCTACGTTCTCAGCTGATGTTTAAAGGTTAGCTGAATTAAGCTCGCAACCTCTAGTTATTCGG
1 GACCTACATTCT-AGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGCAACCTCTAGTTATTTGA
* *
23957977 GTTAGCTAAGTTAAGCTCGCAACTCCAACACAACTCACG
65 GTTAGCTGAGTTAAGCTCGCAACTCCAACACAACTCGCG
* * * *
23958016 GACCTACATTCCTAGCTGATGCTTAAAGGTTAACTGAGTTAAGCTCGAAACCTCCAGTTATTTGA
1 GACCTACATT-CTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGCAACCTCTAGTTATTTGA
* * *
23958081 GTTAACTGAGTCAAGCTTGC--CT------C-A-T---G
65 GTTAGCTGAGTTAAGCTCGCAACTCCAACACAACTCGCG
* * * *
23958107 GACCTACATTCTCAGTTGATGTTTAAAGGTTAGCTCAGTTAAACTCGCAACCTCTAGTTATTTGG
1 GACCTACATTCT-AGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGCAACCTCTAGTTATTTGA
* * * * *
23958172 GTTAACTAAGTTAAGCTGGCAAC-CCTAACACAACTTGTG
65 GTTAGCTGAGTTAAGCTCGCAACTCC-AACACAACTCGCG
* * * * * *
23958211 GACCTACATTCCCAGCTGATGTTTAAAAGTTAGCTGAGTTAAGATCGCGACCTTTAGTTATTTGG
1 GACCTACATT-CTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGCAACCTCTAGTTATTTGA
* *
23958276 GTTAGCTGAGTTAAGCTCGCAACCCCTACACAACTCGCG
65 GTTAGCTGAGTTAAGCTCGCAACTCCAACACAACTCGCG
* * * * *
23958315 GATCTACGTTCCCAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCACAACCTCCAGTTATTTGA
1 GACCTACATT-CTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGCAACCTCTAGTTATTTGA
* * * **
23958380 GTTAGCTGAGTTAAACTCGCAACTCCGACACAGCTCGTA
65 GTTAGCTGAGTTAAGCTCGCAACTCCAACACAACTCGCG
** * * ** * * *
23958419 GAATTACGTTTCTAGATGACATTTAAAGGTTAGCTGAGTTAAGCTTGTAACCTTTAGTTATTTGA
1 GACCTAC-ATTCTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGCAACCTCTAGTTATTTGA
* * * *
23958484 GTTAGCTGAGTTAAGGTCACAACTTCAACACAGCTCGCG
65 GTTAGCTGAGTTAAGCTCGCAACTCCAACACAACTCGCG
* *
23958523 GACCTATATTCTCAGCTTATGTTTAAAGG
1 GACCTACATTCT-AGCTGATGTTTAAAGG
23958552 ATAACTATGT
Statistics
Matches: 437, Mismatches: 79, Indels: 40
0.79 0.14 0.07
Matches are distributed among these distances:
90 2 0.00
91 72 0.16
93 1 0.00
94 1 0.00
95 1 0.00
96 1 0.00
99 1 0.00
100 1 0.00
101 1 0.00
102 2 0.00
103 4 0.01
104 343 0.78
105 7 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (103 bp):
GACCTACATTCTAGCTGATGTTTAAAGGTTAGCTGAGTTAAGCTCGCAACCTCTAGTTATTTGAG
TTAGCTGAGTTAAGCTCGCAACTCCAACACAACTCGCG
Found at i:23958170 original size:91 final size:91
Alignment explanation
Indices: 23958010--23958188 Score: 243
Period size: 91 Copynumber: 2.0 Consensus size: 91
23958000 TCCAACACAA
* *
23958010 CTCACGGACCTACATTCCTAGCTGATGCTTAAAGGTTAACTGAGTTAAGCTCGAAACCTCCAGTT
1 CTCACGGACCTACATTCCTAGCTGATGCTTAAAGGTTAACTCAGTTAAACTCGAAACCTCCAGTT
*
23958075 ATTTGAGTTAACTGAGTCAAGCTTGC
66 ATTTGAGTTAACTAAGTCAAGCTTGC
* * * * * *
23958101 CTCATGGACCTACATT-CTCAGTTGATGTTTAAAGGTTAGCTCAGTTAAACTCGCAACCTCTAGT
1 CTCACGGACCTACATTCCT-AGCTGATGCTTAAAGGTTAACTCAGTTAAACTCGAAACCTCCAGT
* *
23958165 TATTTGGGTTAACTAAGTTAAGCT
65 TATTTGAGTTAACTAAGTCAAGCT
23958189 GGCAACCCTA
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
90 2 0.03
91 74 0.97
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (91 bp):
CTCACGGACCTACATTCCTAGCTGATGCTTAAAGGTTAACTCAGTTAAACTCGAAACCTCCAGTT
ATTTGAGTTAACTAAGTCAAGCTTGC
Found at i:23958250 original size:195 final size:195
Alignment explanation
Indices: 23957912--23958292 Score: 539
Period size: 195 Copynumber: 2.0 Consensus size: 195
23957902 ATAACTTGTA
* * *
23957912 GACCTACGTTCTCAGCTGATGTTTAAAGGTTAGCTGAATTAAGCTCGCAACCTCTAGTTATTCGG
1 GACCTACATTCTCAGCTGATGTTTAAAGGTTAGCTCAATTAAACTCGCAACCTCTAGTTATTCGG
* *
23957977 GTTAGCTAAGTTAAGCTCGCAACTCCAACACAACTCACGGACCTACATTCCTAGCTGATGCTTAA
66 GTTAACTAAGTTAAGCTCGCAACTCCAACACAACTCACGGACCTACATTCCCAGCTGATGCTTAA
* *
23958042 AGGTTAACTGAGTTAAGCTCGAAACCTCCAGTTATTTGAGTTAACTGAGTCAAGCTTGCCTCATG
131 AAGTTAACTGAGTTAAGATCGAAACCTCCAGTTATTTGAGTTAACTGAGTCAAGCTTGCCTCATG
* * *
23958107 GACCTACATTCTCAGTTGATGTTTAAAGGTTAGCTCAGTTAAACTCGCAACCTCTAGTTATTTGG
1 GACCTACATTCTCAGCTGATGTTTAAAGGTTAGCTCAATTAAACTCGCAACCTCTAGTTATTCGG
* *** *
23958172 GTTAACTAAGTTAAGCTGGCAAC-CCTAACACAACTTGTGGACCTACATTCCCAGCTGATGTTTA
66 GTTAACTAAGTTAAGCTCGCAACTCC-AACACAACTCACGGACCTACATTCCCAGCTGATGCTTA
* ** ** * * *
23958236 AAAGTTAGCTGAGTTAAGATCGCGACCTTTAGTTATTTGGGTTAGCTGAGTTAAGCT
130 AAAGTTAACTGAGTTAAGATCGAAACCTCCAGTTATTTGAGTTAACTGAGTCAAGCT
23958293 CGCAACCCCT
Statistics
Matches: 162, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
194 2 0.01
195 160 0.99
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (195 bp):
GACCTACATTCTCAGCTGATGTTTAAAGGTTAGCTCAATTAAACTCGCAACCTCTAGTTATTCGG
GTTAACTAAGTTAAGCTCGCAACTCCAACACAACTCACGGACCTACATTCCCAGCTGATGCTTAA
AAGTTAACTGAGTTAAGATCGAAACCTCCAGTTATTTGAGTTAACTGAGTCAAGCTTGCCTCATG
Found at i:23959056 original size:22 final size:22
Alignment explanation
Indices: 23959028--23959071 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
23959018 TATGGATGGG
23959028 GTGAAATTTATTAAATTTCATT
1 GTGAAATTTATTAAATTTCATT
23959050 GTGAAATTTATTAAATTTCATT
1 GTGAAATTTATTAAATTTCATT
23959072 CACTGAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (22 bp):
GTGAAATTTATTAAATTTCATT
Found at i:23963887 original size:33 final size:33
Alignment explanation
Indices: 23963739--23964035 Score: 133
Period size: 33 Copynumber: 8.8 Consensus size: 33
23963729 TCGTTTTCTT
*
23963739 GATGCCATAGTCCAACTATGGTCTTA-CA-CAA
1 GATGCCATAGCCCAACTATGGTCTTATCATCAA
* * ** *
23963770 -TTGCCATGGCCCTGCCATGGTCTTA-CACTTGC-A
1 GATGCCATAGCCCAACTATGGTCTTATCA--T-CAA
* * *
23963803 -ATGCCATAACCCAA-TCATGGTCTTATCATTAG
1 GATGCCATAGCCCAACT-ATGGTCTTATCATCAA
* * *
23963835 GATACCATAGCCTAGCTATGGTCTTATCATCAA
1 GATGCCATAGCCCAACTATGGTCTTATCATCAA
* * *
23963868 GATGTCATCGCCCAACTATGGTCTTACACTTATACATA
1 GATGCCATAGCCCAACTATGGTCTT--A-TCAT-CA-A
* * * * **
23963906 TACTGCCATGGTCCAACCATGGTCTTATGTTCAA
1 GA-TGCCATAGCCCAACTATGGTCTTATCATCAA
* * * * * *
23963940 GGTGTCATAACCCAATTATGGTCTTTTCATTAA
1 GATGCCATAGCCCAACTATGGTCTTATCATCAA
*
23963973 AATGCCATAGCCCAACTATGGTCTTA-CATTCAAA
1 GATGCCATAGCCCAACTATGGTCTTATCA-TC-AA
* * * *
23964007 CATTGCCATGGCTCAACCATGGTCTTATC
1 GA-TGCCATAGCCCAACTATGGTCTTATC
23964036 TGTCAATTCA
Statistics
Matches: 191, Mismatches: 56, Indels: 33
0.68 0.20 0.12
Matches are distributed among these distances:
30 21 0.11
32 3 0.02
33 105 0.55
34 8 0.04
35 24 0.13
36 6 0.03
37 3 0.02
38 2 0.01
39 19 0.10
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (33 bp):
GATGCCATAGCCCAACTATGGTCTTATCATCAA
Found at i:23965073 original size:15 final size:16
Alignment explanation
Indices: 23965041--23965073 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23965031 TTTAACAAGT
23965041 TTTACTCCTTTTTCAA
1 TTTACTCCTTTTTCAA
*
23965057 TTTAGTCCTTTTT-AA
1 TTTACTCCTTTTTCAA
23965072 TT
1 TT
23965074 AACTATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.18, C:0.18, G:0.03, T:0.61
Consensus pattern (16 bp):
TTTACTCCTTTTTCAA
Found at i:23967501 original size:68 final size:68
Alignment explanation
Indices: 23967374--23967504 Score: 165
Period size: 68 Copynumber: 1.9 Consensus size: 68
23967364 AAGTCCTCCA
* * *
23967374 AGACATTAAACATGGGTTCAAAATGTGTAAGACCATAGCTAGGCTATAGCAACTCATGGAGTCTG
1 AGACATTAAACATGGGTTCAAAATATGTAAGACCATAGCTAGACTATAGAAACTCATGGAGTCTG
23967439 TTG
66 TTG
** ** * *
23967442 AGACATTAAACATGGGTTCATGATATGTTTGACCATAGCTCGACTATGGAAACAT-ATGGAGTC
1 AGACATTAAACATGGGTTCAAAATATGTAAGACCATAGCTAGACTATAGAAAC-TCATGGAGTC
23967505 CGCCAAGATA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
68 52 0.98
69 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (68 bp):
AGACATTAAACATGGGTTCAAAATATGTAAGACCATAGCTAGACTATAGAAACTCATGGAGTCTG
TTG
Found at i:23988560 original size:22 final size:22
Alignment explanation
Indices: 23988534--23988575 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
23988524 CTTGTGTTAT
23988534 AATTAGAAGCAAATAGGTTTAG
1 AATTAGAAGCAAATAGGTTTAG
*
23988556 AATTAGAAGGAAATAGGTTT
1 AATTAGAAGCAAATAGGTTT
23988576 TCGATGACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.24, T:0.29
Consensus pattern (22 bp):
AATTAGAAGCAAATAGGTTTAG
Found at i:23990618 original size:46 final size:45
Alignment explanation
Indices: 23990469--23990683 Score: 213
Period size: 46 Copynumber: 4.6 Consensus size: 45
23990459 TTTGTGTGTG
23990469 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGA-G-
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-TTGA-GACGA
* *
23990515 AGCTAGTGTAAGACAATGTCTCGGACATGGCATCGGCATTGAGACGA
1 AGCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTTGAGACGA
* *
23990562 GAGCTAGTGTAAGACATGTCTGGGACATGTATTGGCCTTGAGACGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACG-A
** * *
23990609 AGCTAGTGTAAGACATGTCTACGACATGCATCGG-CTACGAGATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-TGAGACGA
* *
23990654 TAGTTAGTGTAAGACCATGTTTGGGACATG
1 -AGCTAGTGTAAGA-CATGTCTGGGACATG
23990684 GAATCTGCAC
Statistics
Matches: 143, Mismatches: 16, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
45 7 0.05
46 77 0.54
47 38 0.27
48 21 0.15
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGA
Found at i:23990844 original size:55 final size:55
Alignment explanation
Indices: 23990783--23990893 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
23990773 ATGAGGAAAG
*
23990783 TATAACCGTGTTGTAAATAGTACAGGTACCTAATTGGTACGTATGAGATATGAGC
1 TATAACCGTGTTGTAAATAGTACAGGTACCTAATTGGTACATATGAGATATGAGC
23990838 TATAACCGTGTTGTAAATAGTACAGGTACCTAATTGGTACATATGAGATATGAGC
1 TATAACCGTGTTGTAAATAGTACAGGTACCTAATTGGTACATATGAGATATGAGC
23990893 T
1 T
23990894 CTCTATATAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.32
Consensus pattern (55 bp):
TATAACCGTGTTGTAAATAGTACAGGTACCTAATTGGTACATATGAGATATGAGC
Found at i:23992704 original size:53 final size:53
Alignment explanation
Indices: 23992624--23992728 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 53
23992614 TTCCTTTTTA
* * * * * *
23992624 AACTTACCATTTCTATGTCTTGACATGGTCTTACGTGGTATCCTTGACTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGACTTATG
* * *
23992677 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGACTTAT
23992729 AGTAGTTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGACTTATG
Found at i:24000729 original size:232 final size:232
Alignment explanation
Indices: 24000318--24000781 Score: 748
Period size: 232 Copynumber: 2.0 Consensus size: 232
24000308 AAGACGGATA
* *
24000318 GTCTTGATTATATAATCATTATGCTCTTAGTCAAATTATTTAAGCACGTAGTATCACAAACGCCA
1 GTCTTGATTACATAATCATTATGCTCTTAGTCAAATTATTTAAGCAAGTAGTATCACAAACGCCA
* *
24000383 GATTGTGAGTCAATAATAAACACACATATGACCACCTAGTAGATGCATCTATCAAAACCATAACA
66 AATTGTGAGTCAATAATAAACACACATATGACCACCTAGTAGATGCATCTATCAAAACCATAAAA
* * * * *
24000448 TATTTGAATGGTCCACATAGTGGATGAATGATTTCACATATATCACCTTGAATATGTTTCAAAAT
131 TATTTGAATGGTCCACATAGTGGATGAATGACTTCACATATACCACCTTGAATACGTTTAAAAAA
**
24000513 TGTGGGAGATTCAATCCCAAACTTTTTTATAGTGATG
196 TACGGGAGATTCAATCCCAAACTTTTTTATAGTGATG
* *
24000550 GTCTTGATTGCATAATCATTATGCTCTTATTCAAATTATTTAAGCAAGTAGTATCACAAACGCCA
1 GTCTTGATTACATAATCATTATGCTCTTAGTCAAATTATTTAAGCAAGTAGTATCACAAACGCCA
* * *
24000615 AATTGTGAGTTAATAATAAACACACATATGACCACCTAGTAGATGTATCTATCAAACCCATAAAA
66 AATTGTGAGTCAATAATAAACACACATATGACCACCTAGTAGATGCATCTATCAAAACCATAAAA
* *
24000680 TTTTTGAATGGTCCACATGGTGGATGAATGACTTCACATATACCACCTTGAATACGTTTAAAAAA
131 TATTTGAATGGTCCACATAGTGGATGAATGACTTCACATATACCACCTTGAATACGTTTAAAAAA
* *
24000745 TACGGGAGATTCAATCCCAAACTTTTTTCTGGTGATG
196 TACGGGAGATTCAATCCCAAACTTTTTTATAGTGATG
24000782 CTCTAATAAA
Statistics
Matches: 212, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
232 212 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (232 bp):
GTCTTGATTACATAATCATTATGCTCTTAGTCAAATTATTTAAGCAAGTAGTATCACAAACGCCA
AATTGTGAGTCAATAATAAACACACATATGACCACCTAGTAGATGCATCTATCAAAACCATAAAA
TATTTGAATGGTCCACATAGTGGATGAATGACTTCACATATACCACCTTGAATACGTTTAAAAAA
TACGGGAGATTCAATCCCAAACTTTTTTATAGTGATG
Found at i:24007303 original size:21 final size:21
Alignment explanation
Indices: 24007277--24007316 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
24007267 CTGCATTGGG
24007277 TTAGTTTTCTCTTAAACCCAT
1 TTAGTTTTCTCTTAAACCCAT
24007298 TTAGTTTTCTCTTAAACCC
1 TTAGTTTTCTCTTAAACCC
24007317 CAGAGGCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.25, G:0.05, T:0.47
Consensus pattern (21 bp):
TTAGTTTTCTCTTAAACCCAT
Found at i:24021740 original size:25 final size:25
Alignment explanation
Indices: 24021712--24021796 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 25
24021702 ATGATTTCCT
24021712 TGCCTTATAGAACTTATCAATGCCA
1 TGCCTTATAGAACTTATCAATGCCA
** * *
24021737 TGCCTTGGCAT-GGTCTTA-CATGATTTCCT
1 TGCCTT---ATAGAACTTATCA--A-TGCCA
24021766 TGCCTTATAGAACTTATCAATGCCA
1 TGCCTTATAGAACTTATCAATGCCA
24021791 TGCCTT
1 TGCCTT
24021797 GACATGGTCT
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
25 15 0.34
26 5 0.11
27 10 0.23
28 5 0.11
29 9 0.20
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (25 bp):
TGCCTTATAGAACTTATCAATGCCA
Found at i:24021750 original size:54 final size:54
Alignment explanation
Indices: 24021559--24021820 Score: 357
Period size: 54 Copynumber: 4.9 Consensus size: 54
24021549 TTTCCTTTTT
* * * * * *
24021559 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * **
24021613 -AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * *
24021666 TTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 -GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* *
24021721 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
24021775 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
24021821 ATCTTACCAA
Statistics
Matches: 187, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 45 0.24
54 95 0.51
55 44 0.24
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:24021948 original size:47 final size:46
Alignment explanation
Indices: 24021783--24022008 Score: 194
Period size: 47 Copynumber: 4.8 Consensus size: 46
24021773 TAGAACTTAT
* *
24021783 CAATGCCATGCCTTGACATGGTCTTACATGATATCCTTA-TC-TTAC
1 CAATGCCATGTCTTGACATGGTCTTACATG-GATCCTTAGTCATTAC
***
24021828 CAAATGCCATGTTCCAAACATGGTCTTACATGGTATCCTT-GTC-TTAGTGC
1 C-AATGCCATG-TCTTGACATGGTCTTACATGG-ATCCTTAGTCATTA---C
** ** * *
24021878 CAATGCCACATCTTGATGTGGTCTTACATGGAGTCCTTAGTCAATGC
1 CAATGCCATGTCTTGACATGGTCTTACATGGA-TCCTTAGTCATTAC
* * *
24021925 CGATGCCATGTCTTGACATGGTCTTACACGGGATCCTT-G-CCTTAC
1 CAATGCCATGTCTTGACATGGTCTTACA-TGGATCCTTAGTCATTAC
24021970 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTA
1 CAATGCCATGTCTTGACATGGTCTTACATGG-ATCCTTA
24022009 ACCGTCAATT
Statistics
Matches: 143, Mismatches: 25, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
44 2 0.01
45 37 0.26
46 10 0.07
47 57 0.40
48 24 0.17
49 10 0.07
50 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (46 bp):
CAATGCCATGTCTTGACATGGTCTTACATGGATCCTTAGTCATTAC
Found at i:24022566 original size:30 final size:30
Alignment explanation
Indices: 24022521--24022578 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
24022511 TCGCTAACTC
* *
24022521 AAACTTTTTCAAAATTACAATTTTGCCCAT
1 AAACCTTTGCAAAATTACAATTTTGCCCAT
**
24022551 AAACCTTTGCAAAATTATGATTTTGCCC
1 AAACCTTTGCAAAATTACAATTTTGCCC
24022579 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACCTTTGCAAAATTACAATTTTGCCCAT
Found at i:24027068 original size:30 final size:30
Alignment explanation
Indices: 24027034--24027093 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
24027024 TATGTTCACA
24027034 TAAA-TCACGCATAACAAACCAAATCATGTT
1 TAAATTCA-GCATAACAAACCAAATCATGTT
* *
24027064 TAAATTGAGCTTAACAAACCAAATCATGTT
1 TAAATTCAGCATAACAAACCAAATCATGTT
24027094 CACATAAAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.45, C:0.20, G:0.08, T:0.27
Consensus pattern (30 bp):
TAAATTCAGCATAACAAACCAAATCATGTT
Found at i:24027978 original size:26 final size:26
Alignment explanation
Indices: 24027928--24027978 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
24027918 CTCATCTCAT
*
24027928 TATCAACCAAATACTACATATACATA
1 TATCAACCAAATACTACATAAACATA
24027954 TATCATACCAAA-ACTACCA-AAACAT
1 TATCA-ACCAAATACTA-CATAAACAT
24027979 CATCTACAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24
Consensus pattern (26 bp):
TATCAACCAAATACTACATAAACATA
Found at i:24033942 original size:5 final size:5
Alignment explanation
Indices: 24033934--24033967 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
24033924 ATGAGATAGT
* *
24033934 TTTTA TTTTA TTTTA TTCTA TTTTA TTTAA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
24033968 GGAAGTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:24034157 original size:14 final size:14
Alignment explanation
Indices: 24034138--24034195 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
24034128 AAACATTATA
24034138 TTTTAATTTGATAT
1 TTTTAATTTGATAT
*
24034152 TTTTAATTATTATGATT
1 TTTTAATT-TGAT-A-T
* *
24034169 TTTTAATTTAAAAT
1 TTTTAATTTGATAT
24034183 TTTTAATCTTGAT
1 TTTTAAT-TTGAT
24034196 TAAATGTAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
14 16 0.46
15 7 0.20
16 3 0.09
17 9 0.26
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (14 bp):
TTTTAATTTGATAT
Found at i:24042472 original size:3 final size:3
Alignment explanation
Indices: 24042466--24042499 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
24042456 AAGAAGACAG
24042466 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
24042500 CGATGATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:24044094 original size:20 final size:20
Alignment explanation
Indices: 24044071--24044121 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
24044061 TTTATATTAT
*
24044071 ATATTTATATGTT-ATTTTTA
1 ATATTTATAT-TTAATGTTTA
*
24044091 ATATTTAGATTTAATGTTTA
1 ATATTTATATTTAATGTTTA
24044111 ATA-TTATATTT
1 ATATTTATATTT
24044122 TTGTTTGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (20 bp):
ATATTTATATTTAATGTTTA
Found at i:24047283 original size:39 final size:39
Alignment explanation
Indices: 24047237--24047411 Score: 271
Period size: 39 Copynumber: 4.5 Consensus size: 39
24047227 CATACTCATT
* * *
24047237 TTTAAGCATATATCATATTACACATATAATCACCTAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* *
24047276 TTCAAGCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
*
24047315 TTTAAGCATATATCACAATATACATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* *
24047354 TTTAAGCATATGTCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
24047393 -TTAAGCATATATCACAATA
1 TTTAAGCATATATCACAATA
24047412 TATGTAACAC
Statistics
Matches: 124, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
38 18 0.15
39 106 0.85
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATCACATAACA
Found at i:24047547 original size:16 final size:16
Alignment explanation
Indices: 24047492--24047547 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
24047482 ATTTTAGATA
*
24047492 ATTTATGTTATTTACT
1 ATTTATATTATTTACT
* *
24047508 ATTCATGTTATTTACT
1 ATTTATATTATTTACT
*
24047524 ATTAATATTATTTACT
1 ATTTATATTATTTACT
24047540 ATTTATAT
1 ATTTATAT
24047548 CCAAAAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (16 bp):
ATTTATATTATTTACT
Found at i:24050068 original size:31 final size:31
Alignment explanation
Indices: 24050032--24050108 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
24050022 ATTAATCCCC
* *
24050032 AAAATACATAGATTAAGTTATACCAATCTCA
1 AAAATACAAAAATTAAGTTATACCAATCTCA
*
24050063 AAAATATAAAAATTAAGTTATACCAATCTCA
1 AAAATACAAAAATTAAGTTATACCAATCTCA
*
24050094 AAAATATAAAAATTA
1 AAAATACAAAAATTA
24050109 CTTAAAACGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.29
Consensus pattern (31 bp):
AAAATACAAAAATTAAGTTATACCAATCTCA
Found at i:24057372 original size:34 final size:34
Alignment explanation
Indices: 24057334--24057401 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
24057324 ATCACATATA
* * **
24057334 TCCATCAAAATTCATCATGCAAATGGAACTTAAC
1 TCCATCAAAATTCACCATCCAAACAGAACTTAAC
**
24057368 TCCATTGAAATTCACCATCCAAACAGAACTTAAC
1 TCCATCAAAATTCACCATCCAAACAGAACTTAAC
24057402 ATTTTCTGGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.25
Consensus pattern (34 bp):
TCCATCAAAATTCACCATCCAAACAGAACTTAAC
Found at i:24058599 original size:39 final size:40
Alignment explanation
Indices: 24058555--24058824 Score: 354
Period size: 39 Copynumber: 6.9 Consensus size: 40
24058545 TACAATATAC
* * **
24058555 ATAATCACACAATATTTAAACATATATCACAATACT-TGT
1 ATAATCACATAACATTTAAACATATATCACAATACTACAT
*
24058594 ATAATCACATAACATTTAAACATATATCATAATA-TACAT
1 ATAATCACATAACATTTAAACATATATCACAATACTACAT
* * * **
24058633 ATAATCACATAATATTTAAACATAAATCATAATACT-TGT
1 ATAATCACATAACATTTAAACATATATCACAATACTACAT
* * *
24058672 ATAATCATATAACATTCAAGCATATATCACAATA-TACAT
1 ATAATCACATAACATTTAAACATATATCACAATACTACAT
*
24058711 ATAATCACATAACATTTAAGCATATATCACAATACT-CAT
1 ATAATCACATAACATTTAAACATATATCACAATACTACAT
* *
24058750 ATAATCACAAAACATTTAAGCATATATCACAATA-TACAT
1 ATAATCACATAACATTTAAACATATATCACAATACTACAT
24058789 ATAATCACATAACATTTAAACATATATCACAATACT
1 ATAATCACATAACATTTAAACATATATCACAATACT
24058825 CAAAAACATT
Statistics
Matches: 203, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
38 3 0.01
39 197 0.97
40 3 0.01
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (40 bp):
ATAATCACATAACATTTAAACATATATCACAATACTACAT
Found at i:24058675 original size:78 final size:78
Alignment explanation
Indices: 24058546--24058824 Score: 427
Period size: 78 Copynumber: 3.6 Consensus size: 78
24058536 TTGGGTTGTT
* *
24058546 ACAATATAC--ATAATCACACAATATTTAAACATATATCACAATACTTGTATAATCACATAACAT
1 ACAATATACATATAATCACATAACATTTAAACATATATCACAATACTTGTATAATCACATAACAT
*
24058609 TTAAACATATATC
66 TTAAGCATATATC
* * * * *
24058622 ATAATATACATATAATCACATAATATTTAAACATAAATCATAATACTTGTATAATCATATAACAT
1 ACAATATACATATAATCACATAACATTTAAACATATATCACAATACTTGTATAATCACATAACAT
*
24058687 TCAAGCATATATC
66 TTAAGCATATATC
* ** *
24058700 ACAATATACATATAATCACATAACATTTAAGCATATATCACAATACTCATATAATCACAAAACAT
1 ACAATATACATATAATCACATAACATTTAAACATATATCACAATACTTGTATAATCACATAACAT
24058765 TTAAGCATATATC
66 TTAAGCATATATC
24058778 ACAATATACATATAATCACATAACATTTAAACATATATCACAATACT
1 ACAATATACATATAATCACATAACATTTAAACATATATCACAATACT
24058825 CAAAAACATT
Statistics
Matches: 183, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
76 8 0.04
78 175 0.96
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.32
Consensus pattern (78 bp):
ACAATATACATATAATCACATAACATTTAAACATATATCACAATACTTGTATAATCACATAACAT
TTAAGCATATATC
Found at i:24062003 original size:101 final size:101
Alignment explanation
Indices: 24061828--24062027 Score: 240
Period size: 101 Copynumber: 2.0 Consensus size: 101
24061818 ACTCTATTCG
* *
24061828 ATCATTGGGTGCTTCCCTCAAACCATGTCTAGTGTGGCAGCCTTCGCACCCACAGAACTAGTGGA
1 ATCATTGGGTGCTTCCCTCAAACCATGTCTAGTGTAGCAGCCTTCACACCCACAGAACTAGTGGA
* * *
24061893 TCTTATGTGGCTCGAGCTGCGGATCTTAAATCCTTA
66 GCTCATGTGGCTCGAGCTGCGAATCTTAAATCCTTA
* * * * * * *
24061929 ATCATTGGGT-CGTTCCCTCGACCCATGTTTGGTGTAGCGGCCTTTACACTCACAGAACTAGTGG
1 ATCATTGGGTGC-TTCCCTCAAACCATGTCTAGTGTAGCAGCCTTCACACCCACAGAACTAGTGG
* * * *
24061993 GGCTCATGTGGTTCGAGGTGCGAATCTTAACTCCT
65 AGCTCATGTGGCTCGAGCTGCGAATCTTAAATCCT
24062028 ACAACTAATG
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
100 1 0.01
101 81 0.99
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.29
Consensus pattern (101 bp):
ATCATTGGGTGCTTCCCTCAAACCATGTCTAGTGTAGCAGCCTTCACACCCACAGAACTAGTGGA
GCTCATGTGGCTCGAGCTGCGAATCTTAAATCCTTA
Found at i:24065201 original size:46 final size:44
Alignment explanation
Indices: 24065148--24065363 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 44
24065138 ATTGAGGGTT
* *
24065148 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GAC-TATGATGAGAGCC
* * *
24065194 AGTGTAAGACATGTCCGGGACATGCATCGGCCT-CGA-GACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACTATGATGA-G--AGCC
* * *
24065240 AGTGTAAGACATGTCTAGGACATGCATCGACTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACTAT--GATGAGAGCC
* * * * *
24065286 AGTGTAAGACCATGTCTGGGACATGGCATCGACACAAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-TATGATGAGAGCC
24065333 AGTGTAAGACAGTGTCTGGGACATGGCATCG
1 AGTGTAAGACA-TGTCTGGGACAT-GCATCG
24065364 GTACCTTGCC
Statistics
Matches: 141, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 4 0.03
46 74 0.52
47 46 0.33
48 10 0.07
49 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTATGATGAGAGCC
Found at i:24066581 original size:22 final size:22
Alignment explanation
Indices: 24066518--24066579 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
24066508 TGTTGATTGG
* *
24066518 TCACACGGGCATGTTGCCATTC
1 TCACACGGGCGTGTTGCCCTTC
* *
24066540 CCACACAGGCGTGTTGCCCTTC
1 TCACACGGGCGTGTTGCCCTTC
24066562 TCACACGGGCGTG-TGCCC
1 TCACACGGGCGTGTTGCCC
24066580 CTGTGCCAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
21 5 0.15
22 29 0.85
ACGTcount: A:0.15, C:0.37, G:0.26, T:0.23
Consensus pattern (22 bp):
TCACACGGGCGTGTTGCCCTTC
Found at i:24068894 original size:12 final size:12
Alignment explanation
Indices: 24068872--24068913 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
24068862 ATTGGTCAAT
24068872 TCTACTTCTACA
1 TCTACTTCTACA
** *
24068884 TCTGTTTCTACG
1 TCTACTTCTACA
24068896 TCTACTTCTACA
1 TCTACTTCTACA
24068908 TCTACT
1 TCTACT
24068914 GCTATGTTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.19, C:0.31, G:0.05, T:0.45
Consensus pattern (12 bp):
TCTACTTCTACA
Found at i:24069539 original size:16 final size:16
Alignment explanation
Indices: 24069520--24069550 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24069510 AATTAATAAC
*
24069520 AAAATAATTTAAAATA
1 AAAATAATTAAAAATA
24069536 AAAATAATTAAAAAT
1 AAAATAATTAAAAAT
24069551 TGACACACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATAATTAAAAATA
Found at i:24070362 original size:15 final size:15
Alignment explanation
Indices: 24070342--24070371 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24070332 TTTATCCCAG
24070342 TATTAAACAAGTTAA
1 TATTAAACAAGTTAA
*
24070357 TATTAATCAAGTTAA
1 TATTAAACAAGTTAA
24070372 CAAAAGATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.37
Consensus pattern (15 bp):
TATTAAACAAGTTAA
Found at i:24072934 original size:41 final size:43
Alignment explanation
Indices: 24072878--24072993 Score: 146
Period size: 41 Copynumber: 2.7 Consensus size: 43
24072868 GCTATCTCAC
* * *
24072878 ATCGATGCCACTGTCCCAAACAGGGTCTTACACG-AATCAAAT
1 ATCGATGCCAATGTCCCAAACATGGTCTTACACGTAACCAAAT
* * * *
24072920 A-CGATGCTAATGTCCCAGACATGGTCTTACTCGTAACCACAT
1 ATCGATGCCAATGTCCCAAACATGGTCTTACACGTAACCAAAT
*
24072962 ATCGATGCCAACGTCCCAAACATGGTCTTACA
1 ATCGATGCCAATGTCCCAAACATGGTCTTACA
24072994 TGAGAACACA
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 27 0.44
42 8 0.13
43 26 0.43
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
ATCGATGCCAATGTCCCAAACATGGTCTTACACGTAACCAAAT
Found at i:24072978 original size:43 final size:42
Alignment explanation
Indices: 24072878--24072993 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 42
24072868 GCTATCTCAC
* *
24072878 ATCGATGCC-ACTGTCCCAAACAGGGTCTTACACGAATCAAAT
1 ATCGATGCCAAC-GTCCCAAACATGGTCTTACACGAACCAAAT
* * * * *
24072920 A-CGATGCTAATGTCCCAGACATGGTCTTACTCGTAACCACAT
1 ATCGATGCCAACGTCCCAAACATGGTCTTACACG-AACCAAAT
24072962 ATCGATGCCAACGTCCCAAACATGGTCTTACA
1 ATCGATGCCAACGTCCCAAACATGGTCTTACA
24072994 TGAGAACACA
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 25 0.42
42 9 0.15
43 26 0.43
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (42 bp):
ATCGATGCCAACGTCCCAAACATGGTCTTACACGAACCAAAT
Found at i:24073004 original size:43 final size:42
Alignment explanation
Indices: 24072878--24073007 Score: 131
Period size: 43 Copynumber: 3.1 Consensus size: 42
24072868 GCTATCTCAC
* * * *
24072878 ATCGATGCC-ACTGTCCCAAACAGGGTCTTACACGAATCAAAT
1 ATCGATGCCAAC-GTCCCAAACATGGTCTTACATGAAACACAT
* * * *
24072920 A-CGATGCTAATGTCCCAGACATGGTCTTAC-TCGTAACCACAT
1 ATCGATGCCAACGTCCCAAACATGGTCTTACAT-G-AAACACAT
24072962 ATCGATGCCAACGTCCCAAACATGGTCTTACATGAGAACACAT
1 ATCGATGCCAACGTCCCAAACATGGTCTTACATGA-AACACAT
24073005 ATC
1 ATC
24073008 AGGAACCCTA
Statistics
Matches: 71, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
41 24 0.34
42 10 0.14
43 36 0.51
44 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
ATCGATGCCAACGTCCCAAACATGGTCTTACATGAAACACAT
Found at i:24073911 original size:25 final size:26
Alignment explanation
Indices: 24073883--24073937 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
24073873 TTAATTTATG
24073883 TTATATT-ATAACATATATTAA-CATA
1 TTATATTAATAACATAT-TTAACCATA
* *
24073908 TTAT-TTAATTACATATTTAACCTTA
1 TTATATTAATAACATATTTAACCATA
24073933 TTATA
1 TTATA
24073938 AAATATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (26 bp):
TTATATTAATAACATATTTAACCATA
Found at i:24084168 original size:14 final size:13
Alignment explanation
Indices: 24084149--24084200 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 13
24084139 TTTAATTAGC
24084149 TTAATTAACTTTAA
1 TTAATTAA-TTTAA
24084163 TTAATTAATTTAA
1 TTAATTAATTTAA
*
24084176 TCCTTAATTAATTTACT
1 ---TTAATTAATTTA-A
24084193 TTAATTAA
1 TTAATTAA
24084201 AACTAGCCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
13 5 0.15
14 16 0.48
16 12 0.36
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
TTAATTAATTTAA
Found at i:24086055 original size:40 final size:40
Alignment explanation
Indices: 24085956--24086089 Score: 110
Period size: 40 Copynumber: 3.3 Consensus size: 40
24085946 TATAATCTCA
* * * * * *
24085956 CACACTAAGTGCCTTT-CATAGCCGAAGCTATCTCAGTCTCA
1 CACACTAAGTG-CTTTATATAACCAAAGCTATCTCAATAT-G
* ** *
24085997 CACACTAAGTCCCATATATAACCAAAGCTAT-TCCAATTTG
1 CACACTAAGTGCTTTATATAACCAAAGCTATCT-CAATATG
* * *
24086037 TACACTAAGTGCTTTATATAACCGAAGCTATCTCGATATG
1 CACACTAAGTGCTTTATATAACCAAAGCTATCTCAATATG
24086077 CACACTAAGTGCT
1 CACACTAAGTGCT
24086090 GAACATAATC
Statistics
Matches: 73, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
40 46 0.63
41 27 0.37
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (40 bp):
CACACTAAGTGCTTTATATAACCAAAGCTATCTCAATATG
Found at i:24094924 original size:45 final size:45
Alignment explanation
Indices: 24094883--24094997 Score: 162
Period size: 45 Copynumber: 2.6 Consensus size: 45
24094873 GATATAGTTA
*
24094883 GCTAGGCTCGAAGGCTCGAATAGTATCTCACCGGCATTATAGCCT
1 GCTAGGCTCAAAGGCTCGAATAGTATCTCACCGGCATTATAGCCT
* * *
24094928 GCTAGGCTCAAAAG-TCCGAATAGTATCTCACTGGCATCATAGCCT
1 GCTAGGCTCAAAGGCT-CGAATAGTATCTCACCGGCATTATAGCCT
24094973 GCTAGGCTCAAAGGC-CTGAATAGTA
1 GCTAGGCTCAAAGGCTC-GAATAGTA
24094998 CCGTATGATA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
44 2 0.03
45 60 0.97
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.23
Consensus pattern (45 bp):
GCTAGGCTCAAAGGCTCGAATAGTATCTCACCGGCATTATAGCCT
Found at i:24099530 original size:40 final size:40
Alignment explanation
Indices: 24099468--24099636 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
24099458 AAGCCAAGTA
* * * *
24099468 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
* *
24099507 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
24099547 CCTTCGGGACTTAGCCCGG--ATCG----T---ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
24099578 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
24099618 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
24099637 TTATCATCCA
Statistics
Matches: 110, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
31 26 0.24
33 3 0.03
34 1 0.01
37 1 0.01
38 3 0.03
39 12 0.11
40 64 0.58
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:24099578 original size:31 final size:31
Alignment explanation
Indices: 24099540--24099598 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
24099530 AGTAACTCGC
24099540 ACAAATGCCTTCGGGACTTAGCCCGGATCGT
1 ACAAATGCCTTCGGGACTTAGCCCGGATCGT
24099571 ACAAATGCCTTCGGGACTTAGCCCGGAT
1 ACAAATGCCTTCGGGACTTAGCCCGGAT
24099599 ATAGTAACTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (31 bp):
ACAAATGCCTTCGGGACTTAGCCCGGATCGT
Found at i:24099619 original size:71 final size:71
Alignment explanation
Indices: 24099503--24099636 Score: 259
Period size: 71 Copynumber: 1.9 Consensus size: 71
24099493 TACTCACTCG
24099503 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
24099568 CGTACA
66 CGTACA
*
24099574 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
24099637 TTATCATCCA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (71 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
CGTACA
Found at i:24103431 original size:47 final size:47
Alignment explanation
Indices: 24103379--24103673 Score: 457
Period size: 47 Copynumber: 6.3 Consensus size: 47
24103369 ACAAGATACG
* * *
24103379 TATATGTGATAAGCCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
24103426 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
24103473 TATATGTGATAAGGCCGAGTGGACAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
24103520 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
24103567 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGT-AAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTGTA
*
24103614 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
24103661 TAAATGTGATAAG
1 TATATGTGATAAG
24103674 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
46 3 0.01
47 221 0.97
48 3 0.01
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:24111740 original size:46 final size:46
Alignment explanation
Indices: 24111672--24111762 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
24111662 TATATATACA
* *
24111672 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* * *
24111718 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
24111763 ATACACTTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:24111808 original size:47 final size:47
Alignment explanation
Indices: 24111736--24112067 Score: 513
Period size: 47 Copynumber: 7.1 Consensus size: 47
24111726 ACACGTTTCG
* * * * * *
24111736 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
24111783 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
24111830 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
24111877 CATTGGCCATTCAGCCTTATCACACATATGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
24111924 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
24111971 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * **
24112018 CATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
24112065 CAT
1 CAT
24112068 AAAATCCTAA
Statistics
Matches: 266, Mismatches: 18, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 265 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:24111898 original size:22 final size:22
Alignment explanation
Indices: 24111779--24111900 Score: 72
Period size: 22 Copynumber: 5.3 Consensus size: 22
24111769 TTCCACGTTC
*
24111779 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCAGCCTT
* *
24111801 ATCACATATATG-CATGTTCA-CATT
1 ATCACAT-T-GGCCA--TTCAGCCTT
*
24111825 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
* *
24111848 ATCACATATATG-CATGTTCA-CATT
1 ATCACAT-T-GGCCA--TTCAGCCTT
24111872 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTGGCCATTCAGCCTT
24111895 ATCACA
1 ATCACA
24111901 CATATGCATG
Statistics
Matches: 75, Mismatches: 11, Indels: 28
0.66 0.10 0.25
Matches are distributed among these distances:
22 27 0.36
23 14 0.19
24 14 0.19
25 20 0.27
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:24111947 original size:22 final size:22
Alignment explanation
Indices: 24111920--24112038 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
24111910 GTTCATATTC
24111920 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
24111942 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
24111966 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
24111989 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
24112013 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
24112036 ATC
1 ATC
24112039 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 19 0.27
23 18 0.25
24 18 0.25
25 16 0.23
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:24111971 original size:25 final size:25
Alignment explanation
Indices: 24111848--24111972 Score: 67
Period size: 24 Copynumber: 5.2 Consensus size: 25
24111838 ATTCGGCCTT
*
24111848 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
*
24111873 AT--CACAT-TGGCCA--TTCAGCCTT-
1 ATCACACATAT-G-CATGTTCA-CATTC
*
24111895 ATCACACATATGCATGTTCATATTC
1 ATCACACATATGCATGTTCACATTC
* *
24111920 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
24111942 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
24111967 ATCACA
1 ATCACA
24111973 TTGGCCATTC
Statistics
Matches: 73, Mismatches: 9, Indels: 36
0.62 0.08 0.31
Matches are distributed among these distances:
22 13 0.18
23 20 0.27
24 21 0.29
25 19 0.26
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:24118010 original size:48 final size:48
Alignment explanation
Indices: 24117896--24118322 Score: 407
Period size: 48 Copynumber: 8.9 Consensus size: 48
24117886 GGCATTGACG
* * * *
24117896 TTGATATGTGTGTTAGTGTAAGACCATGTCTGGTACACGGCATTGGCCA
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA
* * * *
24117945 -T-ATTATGAGAGCCAGTGTAAGACCATGTCTGGCACATGGCATCGGCA
1 TTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* ** *
24117992 TTGATATGTGTGATAGTGTAAGACTTTGTCTGGGACATGGCATCGGCG
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * ** *
24118040 TTGATATGTGTGCTAGAGTAAGACAATGTCTGGGACATGGCATTAGCG
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
*
24118088 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCA
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * * *
24118136 TTGATATGTGTGCTAGAGAAAGACCATTTTTGGAACATGGCATCGACCA
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-GCA
* * * * * *
24118185 --CACTATGAGAGCTAGTGTAAGACCATGTCTAGGACATGACATCGGTGA
1 TTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA
* * * * *
24118233 -TGATATGTATGCTAGAGTAAGACCATGTTTGGGACATGGAATCGGCC
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * *
24118280 TCGATATGTGAGCCAGTGTAAGACCATGTC-CGGATATGGCATC
1 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC
24118323 AACATTTTAC
Statistics
Matches: 304, Mismatches: 66, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
47 14 0.05
48 286 0.94
49 4 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (48 bp):
TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
Found at i:24118143 original size:144 final size:143
Alignment explanation
Indices: 24117883--24118303 Score: 452
Period size: 144 Copynumber: 2.9 Consensus size: 143
24117873 GTATCCATGC
* * * * *
24117883 CATGGCATTGACGTTGATATGTGTGTTAGTGTAAGACCATGTCTGGTACACGGCATTGGCCAT-A
1 CATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGA
* * * * *
24117947 TTATGAGAGCCAGTGTAAGACCATGTCTGGCACATGGCATCGGCATTGATATGTGTGATAGTGTA
66 -TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTGTA
*
24118012 AGAC-TTTGTCTGGGA
130 AGACATTT-T-TGGAA
* * * * *
24118027 CATGGCATCGGCGTTGATATGTGTGCTAGAGTAAGACAATGTCTGGGACATGGCATTAGCGTTGA
1 CATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGA
* * *
24118092 TATGTGTGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGATATGTGTGCTAGAGAAA
66 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTGTAA
24118157 GACCATTTTTGGAA
131 GA-CATTTTTGGAA
*** * * * * * *
24118171 CATGGCATCGAC-CACACTATGAGAGCTAGTGTAAGACCATGTCTAGGACATGACATCGGTGATG
1 CATGGCATCGACGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATG
* * * * * * * *
24118235 ATATGTATGCTAGAGTAAGACCATGTTTGGGACATGGAATCGGCCTCGATATGTGAGCCAGTGTA
65 ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTGTA
24118300 AGAC
130 AGAC
24118304 CATGTCCGGA
Statistics
Matches: 229, Mismatches: 44, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
143 2 0.01
144 221 0.97
145 3 0.01
146 3 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (143 bp):
CATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGA
TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTGTAA
GACATTTTTGGAA
Found at i:24118547 original size:25 final size:25
Alignment explanation
Indices: 24118519--24118572 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
24118509 GAGTAAGTTC
24118519 TATCTATGAGAATGATTTCAAGACA
1 TATCTATGAGAATGATTTCAAGACA
*
24118544 TATCTATGAGAATGATTTCAGGACA
1 TATCTATGAGAATGATTTCAAGACA
24118569 -ATCT
1 TATCT
24118573 TGTAATCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 4 0.14
25 24 0.86
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (25 bp):
TATCTATGAGAATGATTTCAAGACA
Found at i:24120244 original size:46 final size:46
Alignment explanation
Indices: 24120172--24120439 Score: 278
Period size: 46 Copynumber: 5.8 Consensus size: 46
24120162 TGTAACCCGC
* * *
24120172 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * *
24120218 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * *
24120268 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
*
24120311 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * * **
24120361 -C-TCA-CGAACTCGGACTCAACTCAACAAGTTCAGAAATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
24120404 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
24120440 ATGCCCAAAT
Statistics
Matches: 182, Mismatches: 26, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
43 13 0.07
44 3 0.02
45 4 0.02
46 88 0.48
47 54 0.30
48 5 0.03
49 4 0.02
50 11 0.06
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:24120339 original size:93 final size:93
Alignment explanation
Indices: 24120180--24120444 Score: 449
Period size: 93 Copynumber: 2.8 Consensus size: 93
24120170 GCCCATAAGT
* * * * *
24120180 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
24120245 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
24120273 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
*
24120338 CGAGTTCGGATGCCTATTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
24120366 GAACTCGGACTCAACTCAACAAGTTCAGAAATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
24120431 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
24120445 CAAATATCCC
Statistics
Matches: 163, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 163 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:24124195 original size:79 final size:81
Alignment explanation
Indices: 24124059--24124243 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
24124049 TTGAATGATG
* *
24124059 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
24124123 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
24124138 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
24124200 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
24124218 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24124244 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:24124257 original size:40 final size:40
Alignment explanation
Indices: 24124060--24124243 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
24124050 TGAATGATGT
* * * *
24124060 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
24124100 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
24124140 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
24124178 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24124219 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24124244 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:24124265 original size:79 final size:79
Alignment explanation
Indices: 24124112--24124276 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
24124102 GGACTAAGAT
* * **
24124112 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
24124177 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
24124191 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
24124254 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
24124270 CCGAAGG
1 CCGAAGG
24124277 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:24124771 original size:170 final size:170
Alignment explanation
Indices: 24124489--24124833 Score: 663
Period size: 170 Copynumber: 2.0 Consensus size: 170
24124479 AAGTATGATA
24124489 TCGAAAATTTGTGCATATGAAATTATCCGTTTAGCTATATGAATGCTATACTTTTGCTGTGCTGG
1 TCGAAAATTTGTGCATATGAAATTATCCGTTTAGCTATATGAATGCTATACTTTTGCTGTGCTGG
24124554 AATTCCTTGCTCAAAACTTACTAAGCATAAATTGCTTACTCCGTTTCTTTGATCCTCTATTTTAT
66 AATTCCTTGCTCAAAACTTACTAAGCATAAATTGCTTACTCCGTTTCTTTGATCCTCTATTTTAT
* *
24124619 AGATTTTGGTTCTCCAGCTATCGGACTTGGGATTTTGAAG
131 AGATTTTGGTTCTCCAACTATCGGACTCGGGATTTTGAAG
24124659 TCGAAAATTTGTGCATATGAAATTATCCGTTTAGCTATATGAATGCTATACTTTTGCTGTGCTGG
1 TCGAAAATTTGTGCATATGAAATTATCCGTTTAGCTATATGAATGCTATACTTTTGCTGTGCTGG
24124724 AATTCCTTGCTCAAAACTTACTAAGCATAAATTGCTTACTCCGTTTCTTTGATCCTCTATTTTAT
66 AATTCCTTGCTCAAAACTTACTAAGCATAAATTGCTTACTCCGTTTCTTTGATCCTCTATTTTAT
*
24124789 AGATTTTGGTTCTCCAACTATTGGACTCGGGATTTTGAAG
131 AGATTTTGGTTCTCCAACTATCGGACTCGGGATTTTGAAG
24124829 TCGAA
1 TCGAA
24124834 GTCGCCCACA
Statistics
Matches: 172, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
170 172 1.00
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (170 bp):
TCGAAAATTTGTGCATATGAAATTATCCGTTTAGCTATATGAATGCTATACTTTTGCTGTGCTGG
AATTCCTTGCTCAAAACTTACTAAGCATAAATTGCTTACTCCGTTTCTTTGATCCTCTATTTTAT
AGATTTTGGTTCTCCAACTATCGGACTCGGGATTTTGAAG
Found at i:24126752 original size:53 final size:53
Alignment explanation
Indices: 24126682--24126887 Score: 187
Period size: 53 Copynumber: 3.8 Consensus size: 53
24126672 CTTTCCTTTT
* * *
24126682 TAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * * * * *
24126735 TGAACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
** * * *** * * *
24126788 TCATAGTTTATCAATACCATATTTTGACATGGTCTTACATGATTTCCTTGCCTTG
1 T-A-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * *
24126843 TAAAACTTACCAATGTCATGCCTTGGCATGGTCTTACTTGGTATC
1 T-AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
24126888 TTTAAACCCT
Statistics
Matches: 115, Mismatches: 36, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
53 47 0.41
54 30 0.26
55 38 0.33
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (53 bp):
TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:24133104 original size:28 final size:28
Alignment explanation
Indices: 24133072--24133126 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
24133062 CTTAACTCTA
24133072 ACTTTGGCAAAATTACAATTTTGCCCTT
1 ACTTTGGCAAAATTACAATTTTGCCCTT
* * * *
24133100 ACTTTTGCATATTTACACTTTTGCCCT
1 ACTTTGGCAAAATTACAATTTTGCCCT
24133127 AAGGCTCGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.44
Consensus pattern (28 bp):
ACTTTGGCAAAATTACAATTTTGCCCTT
Found at i:24133244 original size:48 final size:48
Alignment explanation
Indices: 24133171--24133271 Score: 184
Period size: 48 Copynumber: 2.1 Consensus size: 48
24133161 ATGTTTTATG
24133171 ACATGATGATCATTTAGTTACCTACGGCAACATCAAATTTCCACTCTA
1 ACATGATGATCATTTAGTTACCTACGGCAACATCAAATTTCCACTCTA
* *
24133219 ACATGATGATCATTTATTTATCTACGGCAACATCAAATTTCCACTCTA
1 ACATGATGATCATTTAGTTACCTACGGCAACATCAAATTTCCACTCTA
24133267 ACATG
1 ACATG
24133272 TACTTATGAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.33
Consensus pattern (48 bp):
ACATGATGATCATTTAGTTACCTACGGCAACATCAAATTTCCACTCTA
Found at i:24144306 original size:26 final size:26
Alignment explanation
Indices: 24144291--24144342 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
24144281 ATGATTGTTT
24144291 TAATGATTTTTATGTTGGATTGCATA
1 TAATGATTTTTATGTTGGATTGCATA
24144317 TAATGATTTTTATGTTGGATTGCATA
1 TAATGATTTTTATGTTGGATTGCATA
24144343 ATCATGTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.04, G:0.19, T:0.50
Consensus pattern (26 bp):
TAATGATTTTTATGTTGGATTGCATA
Found at i:24145796 original size:39 final size:39
Alignment explanation
Indices: 24145743--24145866 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
24145733 GGACTTTAGC
* * *
24145743 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* * * * *
24145782 CTGGATATAATTCCAACTCATAGCCTGCAGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
24145821 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
24145860 CCGGATA
1 CCGGATA
24145867 CACATCAAAT
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:24151827 original size:48 final size:48
Alignment explanation
Indices: 24151756--24152621 Score: 887
Period size: 48 Copynumber: 18.2 Consensus size: 48
24151746 GTATCCATGC
*
24151756 CATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
*
24151804 CATGGCATCGGTGTTGATATGTGTGCTA-TAGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGT-GTAAGACCATGTCTGGGA
* * * *
24151852 CATGGCATCGGTGTTGATATGTTTGCTACTGTAAGACCATGTTTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * *
24151900 CATGACATCGGCATTGATATGTGTGCTAGAGTAAGA-C----C---GA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
*** * *
24151940 CATGGCATCGGC-CACATTATGAGAGCTAGTGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * * *
24151988 CATGGCATCAGCATTGATATGTGTGATAGTGTAAGACCATGTCTCGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* *** ** * * * **
24152036 CATGGCATCGAC-CACATTATAAGAGCCAATGTAAGACCATGTCTGCAA
1 CATGGCATCGGCGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * * * * *
24152084 CATGACATTGGTGTTGATGTGTGTGCTAGAGTAAGACCATGTCTAGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
**
24152132 CATGGCATCGGTATTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * *
24152180 CATGGCATTGACGTTGATATGTGTGCTAGAGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
*** * * *
24152228 CATGGCATCGGC-CACATTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * **
24152276 CATGGCATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAAGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
*** * * * *
24152324 CATGGCATCGGC-CACATTATGAGAGCCAGTGTAAAACCATGTCTGGGA
1 CATGGCATCGGCGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
* ** * *
24152372 CATGGTATCGTTGTTGATATGTGTGCTAGAGTAAGACCATGTTTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * *** * * *
24152420 TATGGCATCAGC-CACATTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
*
24152468 CATGGCATCGGCGTTGATATGTGTGCTAGAGTAAGACCATGTCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* *
24152516 CATGGCATCGGCGTTGATATGTGTGCTAGAGTAAGACCATATCTGGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * * *
24152564 CATGGCATCGGCCTTGATATGTGAGCCAGTGTAAGACCATGTCTAGGA
1 CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
24152612 CATGGCATCG
1 CATGGCATCG
24152622 ACATTTTACC
Statistics
Matches: 661, Mismatches: 137, Indels: 40
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.00
40 29 0.04
41 1 0.00
45 1 0.00
47 6 0.01
48 617 0.93
49 6 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
CATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
Found at i:24152216 original size:192 final size:193
Alignment explanation
Indices: 24151756--24152623 Score: 1029
Period size: 192 Copynumber: 4.6 Consensus size: 193
24151746 GTATCCATGC
* * **
24151756 CATGGCATC-GACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTG
1 CATGGCATCGGCCATTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTG
* *** * * * *
24151820 ATATGTGTGCTATAGTAAGACCATGTCTGGGACATGGCATCG---GTGTTGATATGTTTGCTACT
66 ATATGTGTGCTAGAGTAAGACCATGTCTGGGACATGGCATCGACCACATT-ATAAG--AGCCAGT
*
24151882 GTAAGACCATGTTTGGGACATGACATCGGCATTGATATGTGTGCTAGAGTAAGA-C----C---G
128 GTAAGACCATGTCTGGGACATGACATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAGG
24151939 A
193 A
* * * *
24151940 CATGGCATCGGCCA--CATTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCAT
1 CATGGCATCGGCCATTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CGT
* * * *
24152002 TGATATGTGTGATAGTGTAAGACCATGTCTCGGACATGGCATCGACCACATTATAAGAGCCAATG
64 TGATATGTGTGCTAGAGTAAGACCATGTCTGGGACATGGCATCGACCACATTATAAGAGCCAGTG
** * ** *
24152067 TAAGACCATGTCTGCAACATGACATTGGTGTTGATGTGTGTGCTAGAGTAAGACCATGTCTAGGA
129 TAAGACCATGTCTGGGACATGACATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAGGA
* *
24152132 CATGGCATCGG-TATTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGACGTTG
1 CATGGCATCGGCCATTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTG
* *
24152196 ATATGTGTGCTAGAGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTA
66 ATATGTGTGCTAGAGTAAGACCATGTCTGGGACATGGCATCGACCACATTATAAGAGCCAGTGTA
* *
24152261 AGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAAGA
131 AGACCATGTCTGGGACATGACATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAGGA
* * * * * * **
24152324 CATGGCATCGGCCA--CATTATGAGAGCCAGTGTAAAACCATGTCTGGGACATGGTATCGTTGTT
1 CATGGCATCGGCCATTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGTT
* * *
24152387 GATATGTGTGCTAGAGTAAGACCATGTTTGGGATATGGCATC-AGCCACATTATGAGAGCCAGTG
65 GATATGTGTGCTAGAGTAAGACCATGTCTGGGACATGGCATCGA-CCACATTATAAGAGCCAGTG
* * *
24152451 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTAGAGTAAGACCATGTCTGGGA
129 TAAGACCATGTCTGGGACATGACATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAGGA
* * * * *
24152516 CATGGCATCGG-CGTTGATATGTGTGCTAGAGTAAGACCATATCTGGGACATGGCATCGGCCTTG
1 CATGGCATCGGCCATTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTG
* * * *
24152580 ATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC
66 ATATGTGTGCTAGAGTAAGACCATGTCTGGGACATGGCATCGAC
24152624 ATTTTACCCT
Statistics
Matches: 581, Mismatches: 80, Indels: 38
0.83 0.11 0.05
Matches are distributed among these distances:
183 1 0.00
184 139 0.24
185 3 0.01
186 4 0.01
187 2 0.00
189 1 0.00
191 3 0.01
192 423 0.73
193 5 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (193 bp):
CATGGCATCGGCCATTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTG
ATATGTGTGCTAGAGTAAGACCATGTCTGGGACATGGCATCGACCACATTATAAGAGCCAGTGTA
AGACCATGTCTGGGACATGACATCGGCATTGATATGTGTGCTAGAGTAAGACCATGTCTAGGA
Done.