Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 79 of 333
Found at i:24156162 original size:15 final size:15
Alignment explanation
Indices: 24156142--24156200 Score: 55
Period size: 15 Copynumber: 3.6 Consensus size: 15
24156132 TGCTTTTCAC
24156142 AACATGTATTCATTT
1 AACATGTATTCATTT
* *
24156157 AACATGTATAGACTTTT
1 AACATGTAT--TCATTT
24156174 CACAACATGTATTCATTT
1 ---AACATGTATTCATTT
24156192 AACATGTAT
1 AACATGTAT
24156201 AAACCATCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
15 18 0.51
17 4 0.11
18 4 0.11
20 9 0.26
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (15 bp):
AACATGTATTCATTT
Found at i:24156174 original size:35 final size:35
Alignment explanation
Indices: 24156134--24156201 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
24156124 TGCATATATG
24156134 CTTTTCACAACATGTATTCATTTAACATGTATAGA
1 CTTTTCACAACATGTATTCATTTAACATGTATAGA
24156169 CTTTTCACAACATGTATTCATTTAACATGTATA
1 CTTTTCACAACATGTATTCATTTAACATGTATA
24156202 AACCATCTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.34, C:0.18, G:0.07, T:0.41
Consensus pattern (35 bp):
CTTTTCACAACATGTATTCATTTAACATGTATAGA
Found at i:24162703 original size:19 final size:21
Alignment explanation
Indices: 24162654--24162707 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
24162644 TTACCAAAAA
*
24162654 AAAAAATCAAAATAATTTTTT
1 AAAAAATCAAAATAATATTTT
24162675 AAAAAATCAAAATAA-ATTTT
1 AAAAAATCAAAATAATATTTT
*
24162695 -AAAATTCAAAATA
1 AAAAAATCAAAATA
24162708 TTCATAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 12 0.39
20 4 0.13
21 15 0.48
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAAAATCAAAATAATATTTT
Found at i:24166393 original size:33 final size:33
Alignment explanation
Indices: 24166355--24166431 Score: 145
Period size: 33 Copynumber: 2.3 Consensus size: 33
24166345 TCTCCACATT
24166355 CCATTTCCCTTTTCCTTCTCCGTGCGTAGCCGC
1 CCATTTCCCTTTTCCTTCTCCGTGCGTAGCCGC
*
24166388 CCATTTCCCTTTTCCTTCTCCTTGCGTAGCCGC
1 CCATTTCCCTTTTCCTTCTCCGTGCGTAGCCGC
24166421 CCATTTCCCTT
1 CCATTTCCCTT
24166432 CCATCATTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.06, C:0.43, G:0.12, T:0.39
Consensus pattern (33 bp):
CCATTTCCCTTTTCCTTCTCCGTGCGTAGCCGC
Found at i:24167319 original size:15 final size:15
Alignment explanation
Indices: 24167301--24167330 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24167291 TTTTACTTAG
24167301 TTTAATCATCACCAT
1 TTTAATCATCACCAT
24167316 TTTAATCATCACCAT
1 TTTAATCATCACCAT
24167331 CCAAATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.40
Consensus pattern (15 bp):
TTTAATCATCACCAT
Found at i:24181800 original size:43 final size:43
Alignment explanation
Indices: 24181654--24181801 Score: 183
Period size: 43 Copynumber: 3.4 Consensus size: 43
24181644 TATCCTAGAT
* * *
24181654 ATGGTCTTACATGTTATCAAATATCAATGCCACA-ATCCCAGAC
1 ATGGTCTTACACGTAATCAAATATCAATGCCA-ATGTCCCAGAC
* * *
24181697 AGGGTCTTACACGAAATCAAATATCATTGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGAC
* *
24181740 ATGGTCTTACACATAATCTCAATAT-AATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATC-AAATATCAATGCCAATGTCCCAGAC
*
24181783 ATGGTCTTACATGTAATCA
1 ATGGTCTTACACGTAATCA
24181802 CATCTCGATA
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
42 1 0.01
43 83 0.93
44 5 0.06
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGAC
Found at i:24186041 original size:40 final size:39
Alignment explanation
Indices: 24185943--24186165 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
24185933 TCCTCGTTCA
* * ** * *
24185943 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
24185982 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
24186021 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
24186061 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
24186101 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
24186142 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24186166 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 108 0.69
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:24186099 original size:80 final size:79
Alignment explanation
Indices: 24185941--24186165 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
24185931 GCTCCTCGTT
* * ** * *
24185941 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
24186006 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
24186020 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
24186085 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
24186100 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
24186163 GGA
63 GGA
24186166 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 41 0.33
80 77 0.62
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:24186165 original size:120 final size:119
Alignment explanation
Indices: 24185943--24186165 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 119
24185933 TCCTCGTTCA
* * *
24185943 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
24186008 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
24186062 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
24186126 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
24186166 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 38 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:24190982 original size:27 final size:27
Alignment explanation
Indices: 24190951--24191128 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24190941 TAAATTGTAC
24190951 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24190978 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24191004 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24191032 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24191060 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24191087 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24191114 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24191129 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24191065 original size:82 final size:81
Alignment explanation
Indices: 24190952--24191107 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24190942 AAATTGTACA
* *
24190952 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24191016 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24191033 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24191098 TGCGAGTTGA
65 TGCGAATTGA
24191108 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24191119 original size:82 final size:81
Alignment explanation
Indices: 24190948--24191128 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24190938 GATTAAATTG
* *
24190948 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24191013 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24191029 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24191093 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24191111 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24191129 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24199057 original size:27 final size:27
Alignment explanation
Indices: 24199026--24199203 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24199016 TAAATTGTAC
24199026 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24199053 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24199079 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24199107 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24199135 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24199162 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24199189 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24199204 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24199140 original size:82 final size:81
Alignment explanation
Indices: 24199027--24199182 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24199017 AAATTGTACA
* *
24199027 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24199091 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24199108 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24199173 TGCGAGTTGA
65 TGCGAATTGA
24199183 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24199194 original size:82 final size:81
Alignment explanation
Indices: 24199023--24199203 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24199013 GATTAAATTG
* *
24199023 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24199088 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24199104 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24199168 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24199186 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24199204 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24210117 original size:12 final size:12
Alignment explanation
Indices: 24210089--24210117 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
24210079 TATACCTATA
24210089 TGGTAGAATTTT
1 TGGTAGAATTTT
24210101 T-GTAGAATTTT
1 TGGTAGAATTTT
24210112 TGGTAG
1 TGGTAG
24210118 GGCCAATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (12 bp):
TGGTAGAATTTT
Found at i:24211493 original size:28 final size:28
Alignment explanation
Indices: 24211431--24211584 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
24211421 ATATTAAGTC
* * *
24211431 CGCACACTCAGTGCTATATAA-CCAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
24211458 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
24211486 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
24211514 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
24211542 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
24211570 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24211585 GTACAATTTA
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 20 0.17
28 101 0.83
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:24211524 original size:56 final size:56
Alignment explanation
Indices: 24211431--24211609 Score: 261
Period size: 56 Copynumber: 3.2 Consensus size: 56
24211421 ATATTAAGTC
* * *
24211431 CGCACACTCAGTGCTATATAA-CCAACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
* *
24211486 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
* * * *
24211542 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTATATAA-TCAAACT
24211599 CGCACACTTAG
1 CGCACACTTAG
24211610 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
55 19 0.17
56 77 0.69
57 15 0.14
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.25
Consensus pattern (56 bp):
CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
Found at i:24214449 original size:23 final size:23
Alignment explanation
Indices: 24214398--24214454 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 23
24214388 AAAGGATGGA
24214398 CACATTTT-TTTTCTTTTGTTTT
1 CACATTTTCTTTTCTTTTGTTTT
*
24214420 CATCATTTTCTTTCTCTTTTTTTTT
1 CA-CATTTTCTTT-TCTTTTGTTTT
24214445 C-CA-TTTCTTT
1 CACATTTTCTTT
24214455 ATTACTAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
22 9 0.29
23 8 0.26
24 3 0.10
25 11 0.35
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (23 bp):
CACATTTTCTTTTCTTTTGTTTT
Found at i:24225592 original size:25 final size:25
Alignment explanation
Indices: 24225542--24225594 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
24225532 TGTGTAACAA
* *
24225542 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
24225567 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
24225592 CAA
1 CAA
24225595 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:24228489 original size:39 final size:39
Alignment explanation
Indices: 24228432--24228584 Score: 261
Period size: 39 Copynumber: 3.9 Consensus size: 39
24228422 GTGCTGAGAT
* * *
24228432 TGTATTCGGGTTAGAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
24228471 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
24228510 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
* *
24228549 TGTGTCCGGGCTAAAGACCCGCAGGCTTCGTGCTGG
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
24228585 TGCTGGTAAT
Statistics
Matches: 109, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.18, C:0.25, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
Found at i:24235689 original size:43 final size:43
Alignment explanation
Indices: 24235633--24235805 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 43
24235623 AGCTCGTACA
* * * *
24235633 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * * *
24235675 ATGCCACTGTCCCAGATAAGGTCTTACACGAAATCGA-TTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACATATCG
* *
24235718 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
24235761 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
24235804 AT
1 AT
24235806 AACCTAATGT
Statistics
Matches: 106, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
42 6 0.06
43 98 0.92
44 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:24239809 original size:46 final size:46
Alignment explanation
Indices: 24239757--24239928 Score: 247
Period size: 46 Copynumber: 3.7 Consensus size: 46
24239747 TTGGGCATCC
* **
24239757 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTTTC-
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-TGCCT
24239803 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCT
* * *
24239849 GAGCTCGTTGAGTTGAGTTCGAGTTAACTTATGGATGTGAATGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCT
* **
24239895 GAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24239929 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 2 0.02
46 114 0.98
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCT
Found at i:24241504 original size:20 final size:20
Alignment explanation
Indices: 24241476--24241557 Score: 67
Period size: 20 Copynumber: 3.9 Consensus size: 20
24241466 CTAGGAAATA
24241476 TGTGATCTGAACTCATGAAT
1 TGTGATCTGAACTCATGAAT
* **
24241496 TGTGGTCTGAGTTCATGATAT
1 TGTGATCTGAACTCATGA-AT
*
24241517 ATGTGACATCTGAACTCATGAGT
1 -TGTG--ATCTGAACTCATGAAT
*
24241540 TGTGGTCT-AACTTCATGA
1 TGTGATCTGAAC-TCATGA
24241558 TATATGTGAC
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
19 3 0.06
20 24 0.49
21 2 0.04
22 8 0.16
23 1 0.02
24 11 0.22
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAACTCATGAAT
Found at i:24241534 original size:44 final size:44
Alignment explanation
Indices: 24241473--24241568 Score: 151
Period size: 44 Copynumber: 2.2 Consensus size: 44
24241463 TCACTAGGAA
* *
24241473 ATATGTG--ATCTGAACTCATGAATTGTGGTCTGAGTTCATGAT
1 ATATGTGACATCTGAACTCATGAATTGTGGTCTAACTTCATGAT
*
24241515 ATATGTGACATCTGAACTCATGAGTTGTGGTCTAACTTCATGAT
1 ATATGTGACATCTGAACTCATGAATTGTGGTCTAACTTCATGAT
24241559 ATATGTGACA
1 ATATGTGACA
24241569 CATGTTTTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
42 7 0.14
44 42 0.86
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (44 bp):
ATATGTGACATCTGAACTCATGAATTGTGGTCTAACTTCATGAT
Found at i:24245612 original size:44 final size:45
Alignment explanation
Indices: 24245557--24245643 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 45
24245547 CGGATGTCAC
* *
24245557 ATGCATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGA
1 ATGCATCGCATCCATAATGAACTCAGACCAACTCAACAAGCTCGA
24245602 ATGC-TCGCATCCATAATGAACTCAGACCAACTCAACAAGCTC
1 ATGCATCGCATCCATAATGAACTCAGACCAACTCAACAAGCTC
24245644 AGATGCTTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 36 0.90
45 4 0.10
ACGTcount: A:0.34, C:0.32, G:0.15, T:0.18
Consensus pattern (45 bp):
ATGCATCGCATCCATAATGAACTCAGACCAACTCAACAAGCTCGA
Found at i:24245741 original size:45 final size:45
Alignment explanation
Indices: 24245573--24245738 Score: 165
Period size: 45 Copynumber: 3.7 Consensus size: 45
24245563 CGCATCCATA
* * * * ** *
24245573 ATGAACTCGGACCAACTCAACGAGCTC-GAATGCTCGCATCCATA
1 ATGAACTCAGACCAACTCAACAAGCTCAGATTGCTCACATATATC
*
24245617 ATGAACTCAGACCAACTCAACAAGCTCAGA-TGCTTCACATATAAC
1 ATGAACTCAGACCAACTCAACAAGCTCAGATTGC-TCACATATATC
** ** * * * *
24245662 ACAAACTTGGACTAACTCAACAAGTTCATATTTCTCACATATATC
1 ATGAACTCAGACCAACTCAACAAGCTCAGATTGCTCACATATATC
24245707 ATGAACTCAGACCAACTCAACAAGCTCAGATT
1 ATGAACTCAGACCAACTCAACAAGCTCAGATT
24245739 TCTAAATTAC
Statistics
Matches: 96, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
44 28 0.29
45 66 0.69
46 2 0.02
ACGTcount: A:0.37, C:0.28, G:0.12, T:0.22
Consensus pattern (45 bp):
ATGAACTCAGACCAACTCAACAAGCTCAGATTGCTCACATATATC
Found at i:24248037 original size:25 final size:23
Alignment explanation
Indices: 24248009--24248133 Score: 69
Period size: 23 Copynumber: 5.3 Consensus size: 23
24247999 AAGCTTCTCC
24248009 TGAGCTGATGAACAGTAAGCTCTAA
1 TGAGCTGA--AACAGTAAGCTCTAA
*
24248034 TGAGCTGAAACGGTAAGCTCT-A
1 TGAGCTGAAACAGTAAGCTCTAA
* *
24248056 TCGAACTG-AACAATAAGCTC-ATA
1 T-GAGCTGAAACAGTAAGCTCTA-A
* * *
24248079 TGAGATGAAAC-GATAAACTCCAA
1 TGAGCTGAAACAG-TAAGCTCTAA
* * * *
24248102 TGTGTTGAAAATAGTAAGCTCTTA
1 TGAGCTG-AAACAGTAAGCTCTAA
*
24248126 CGAGCTGA
1 TGAGCTGA
24248134 TATATTGGTA
Statistics
Matches: 75, Mismatches: 17, Indels: 18
0.68 0.15 0.16
Matches are distributed among these distances:
22 16 0.21
23 35 0.47
24 15 0.20
25 9 0.12
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.24
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAA
Found at i:24248053 original size:23 final size:24
Alignment explanation
Indices: 24247995--24248055 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
24247985 GAGCCATGAT
**
24247995 CGGTAAGCTTCTCCTGAGCTGATGAA
1 CGGTAAGC-TCTAATGAGCTGA-GAA
*
24248021 CAGTAAGCTCTAATGAGCTGA-AA
1 CGGTAAGCTCTAATGAGCTGAGAA
24248044 CGGTAAGCTCTA
1 CGGTAAGCTCTA
24248056 TCGAACTGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
23 13 0.42
25 11 0.35
26 7 0.23
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (24 bp):
CGGTAAGCTCTAATGAGCTGAGAA
Found at i:24248087 original size:22 final size:21
Alignment explanation
Indices: 24248015--24248087 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
24248005 CTCCTGAGCT
24248015 GATGAACAGTAAGCTCTAATGA
1 GATGAACAGTAAGCTCT-ATGA
* *
24248037 GCTGAAACGGTAAGCTCTATCGA
1 GATG-AACAGTAAGCTCTAT-GA
*
24248060 -ACTGAACAATAAGCTCATATGA
1 GA-TGAACAGTAAGCTC-TATGA
24248082 GATGAA
1 GATGAA
24248088 ACGATAAACT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
22 21 0.51
23 20 0.49
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (21 bp):
GATGAACAGTAAGCTCTATGA
Found at i:24251804 original size:39 final size:40
Alignment explanation
Indices: 24251647--24251871 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
24251637 GCTCCTCGTT
* * * *
24251647 CAAATGCCTTTGGGACATAGCCCGG-TTATACTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
24251687 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
24251727 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
24251767 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * * *
24251806 CAAATACCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
24251847 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
24251872 CATCATTCAA
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 113 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:24251855 original size:79 final size:79
Alignment explanation
Indices: 24251647--24251871 Score: 229
Period size: 79 Copynumber: 2.8 Consensus size: 79
24251637 GCTCCTCGTT
* * * * * * * *
24251647 CAAATGCCTTTGGGACATAGCCCGGTTATACTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATACCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
24251712 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * * *
24251727 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATACCTTCGGGACTTAACCCGGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
*
24251791 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * * *
24251806 CAAATACCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATACCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
24251870 GA
64 GA
24251872 CATCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
78 3 0.02
79 58 0.48
80 58 0.48
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATACCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:24253930 original size:28 final size:28
Alignment explanation
Indices: 24253867--24254020 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
24253857 ATATTAAGTC
* *
24253867 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
24253894 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
24253922 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
24253950 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
24253978 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
24254006 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24254021 GTACAATTTA
Statistics
Matches: 123, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 101 0.82
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:24253956 original size:56 final size:56
Alignment explanation
Indices: 24253867--24254045 Score: 270
Period size: 56 Copynumber: 3.2 Consensus size: 56
24253857 ATATTAAGTC
* *
24253867 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
*
24253922 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
24253978 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTATATAA-TCAAACT
24254035 CGCACACTTAG
1 CGCACACTTAG
24254046 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 21 0.19
56 76 0.67
57 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (56 bp):
CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
Found at i:24262116 original size:20 final size:20
Alignment explanation
Indices: 24262088--24262155 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
24262078 CTTAAAAATA
24262088 TGTGATCTGAACTCATGAGT
1 TGTGATCTGAACTCATGAGT
* ** *
24262108 TGTGGTCTGAGTTCATGATAT
1 TGTGATCTGAACTCATGA-GT
*
24262129 ATGTGACATCTGAACTCATAAGT
1 -TGTG--ATCTGAACTCATGAGT
24262152 TGTG
1 TGTG
24262156 GTCTAAGTTC
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
20 15 0.43
21 1 0.03
22 8 0.23
23 1 0.03
24 10 0.29
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAACTCATGAGT
Found at i:24262146 original size:44 final size:44
Alignment explanation
Indices: 24262085--24262180 Score: 160
Period size: 44 Copynumber: 2.2 Consensus size: 44
24262075 TCACTTAAAA
* *
24262085 ATATGTG--ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGAT
1 ATATGTGACATCTGAACTCATAAGTTGTGGTCTAAGTTCATGAT
24262127 ATATGTGACATCTGAACTCATAAGTTGTGGTCTAAGTTCATGAT
1 ATATGTGACATCTGAACTCATAAGTTGTGGTCTAAGTTCATGAT
24262171 ATATGTGACA
1 ATATGTGACA
24262181 CATGTTTTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
42 7 0.14
44 43 0.86
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.36
Consensus pattern (44 bp):
ATATGTGACATCTGAACTCATAAGTTGTGGTCTAAGTTCATGAT
Found at i:24273265 original size:41 final size:40
Alignment explanation
Indices: 24273211--24273372 Score: 152
Period size: 41 Copynumber: 3.9 Consensus size: 40
24273201 TCCTAGCACC
*
24273211 GGCTTAAAAGCCCTTCGAGACCAAGCTCGGATTAGACTACT
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGAC-ACT
* * *
24273252 GGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-TTATGACACT
1 GGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-GACACT
* * *
24273292 GGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG-CACT
1 GGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--ATTAGACACT
24273335 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTTAGAC
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGAC
24273373 CCCGATTAGC
Statistics
Matches: 99, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
39 1 0.01
40 17 0.17
41 48 0.48
42 19 0.19
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACACT
Found at i:24276325 original size:25 final size:25
Alignment explanation
Indices: 24276273--24276330 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
24276263 ATAAAACCTA
24276273 AAAATGAAAAAGTATTAAATGAAAAT
1 AAAAT-AAAAAGTATTAAATGAAAAT
*
24276299 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAATGAAAAT
24276324 -AAATAAA
1 AAAATAAA
24276331 CATAAAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 7 0.23
25 13 0.43
26 10 0.33
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.21
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAATGAAAAT
Found at i:24285035 original size:22 final size:21
Alignment explanation
Indices: 24285007--24285048 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
24284997 AAACCCATAC
*
24285007 GTGAATTCTAAATTGTGATATT
1 GTGAATTCTAAAGTGT-ATATT
24285029 GTGAATTCTAAAGTGTATAT
1 GTGAATTCTAAAGTGTATAT
24285049 ATATGTGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (21 bp):
GTGAATTCTAAAGTGTATATT
Found at i:24285110 original size:47 final size:47
Alignment explanation
Indices: 24285046--24285717 Score: 1138
Period size: 47 Copynumber: 14.3 Consensus size: 47
24285036 CTAAAGTGTA
24285046 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
24285093 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
24285140 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
24285189 TATATATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
24285236 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
24285283 TATATA--TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24285328 TATATATGTGATAAGGCCTAATGGCCGATG-GATGAATATGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24285374 TATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
24285421 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
24285470 TATATATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
24285517 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24285564 TATATA--TGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
24285609 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
24285656 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24285703 TATAAATGTGATAAG
1 TATATATGTGATAAG
24285718 TCCCGAAGGG
Statistics
Matches: 592, Mismatches: 24, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
45 89 0.15
46 44 0.07
47 366 0.62
49 93 0.16
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:24285580 original size:281 final size:282
Alignment explanation
Indices: 24285046--24285717 Score: 1242
Period size: 281 Copynumber: 2.4 Consensus size: 282
24285036 CTAAAGTGTA
24285046 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
24285111 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 TAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
24285176 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAAAGTGTATAT
131 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAAAGTGTATAT
24285241 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGATAAGGCCTAATGGC
196 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGATAAGGCCTAATGGC
24285306 CGATGTGATGAATGTGAAAGTG
261 CGATGTGATGAATGTGAAAGTG
*
24285328 TATATATGTGATAAGGCCTAATGGCCGATG-GATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
24285392 TAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 TAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
24285457 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAAAGTGTATAT
131 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAAAGTGTATAT
*
24285522 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGATAAGGCCTAATGGT
196 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGATAAGGCCTAATGGC
24285587 CGATGTGATGAATGTGAAAGTG
261 CGATGTGATGAATGTGAAAGTG
* *
24285609 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * *
24285674 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 TAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
24285718 TCCCGAAGGG
Statistics
Matches: 379, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
280 10 0.03
281 279 0.74
282 90 0.24
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (282 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTG
Found at i:24285595 original size:22 final size:22
Alignment explanation
Indices: 24285522--24285595 Score: 53
Period size: 22 Copynumber: 3.3 Consensus size: 22
24285512 AAGTGTATAT
*
24285522 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGTCG
* * **
24285544 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GTCG
*
24285567 ATATGATAAGGCCTAATGGTCG
1 ATGTGATAAGGCCTAATGGTCG
24285589 ATGTGAT
1 ATGTGAT
24285596 GAATGTGAAA
Statistics
Matches: 36, Mismatches: 11, Indels: 10
0.63 0.19 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.58
23 13 0.36
24 1 0.03
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGTCG
Found at i:24285637 original size:328 final size:327
Alignment explanation
Indices: 24285046--24285717 Score: 1134
Period size: 328 Copynumber: 2.0 Consensus size: 327
24285036 CTAAAGTGTA
24285046 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
24285111 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCGATGTGAT
*
24285176 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAAAGTGTATAT
130 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
24285241 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGATAAGGCCTAATGGC
195 A-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGATAAGGCCTAATGGC
* * * *
24285306 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG-GATGAATATGAA
259 CGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATATGAA
24285370 AGTG
324 AGTG
*
24285374 TATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
*
24285439 CCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGG
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGA
*
24285503 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
129 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
*
24285568 TA-TGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
194 TAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--TGATAAGGCCTAATG
* * * *
24285632 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTG
257 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATATG
24285697 AAAGTG
322 AAAGTG
*
24285703 TATAAATGTGATAAG
1 TATATATGTGATAAG
24285718 TCCCGAAGGG
Statistics
Matches: 324, Mismatches: 15, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
326 44 0.14
328 205 0.63
329 28 0.09
330 47 0.15
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (327 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATATGAAAG
TG
Found at i:24285892 original size:37 final size:37
Alignment explanation
Indices: 24285836--24285914 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
24285826 CCGAGCTCTA
* * *
24285836 AAGACCGGATGACTACGTGTGG-GATTTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGA-TTATGTCCGGGT
* *
24285873 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
24285910 AAGAC
1 AAGAC
24285915 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 34 0.94
38 2 0.06
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:24287490 original size:40 final size:40
Alignment explanation
Indices: 24287128--24287478 Score: 544
Period size: 40 Copynumber: 8.8 Consensus size: 40
24287118 GAGAATTGAG
* *
24287128 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTTCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
24287168 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
24287208 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
24287248 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
24287288 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
24287328 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* *
24287368 AGTGATGTATCCGGACTAAGT-TCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
* * * *
24287408 AGTGATATATCCGTGCTAA-CCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * * * *
24287447 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCA
24287479 GTCATGCTGG
Statistics
Matches: 289, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
39 32 0.11
40 257 0.89
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:24290526 original size:49 final size:49
Alignment explanation
Indices: 24290473--24290796 Score: 520
Period size: 47 Copynumber: 6.8 Consensus size: 49
24290463 TTTAGGATTG
*
24290473 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCT
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
24290522 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
24290571 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
24290618 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
24290667 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
* * * *
24290714 GATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
* * *
24290761 AACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
24290797 TCCCGAAGGG
Statistics
Matches: 261, Mismatches: 10, Indels: 10
0.93 0.04 0.04
Matches are distributed among these distances:
47 142 0.54
48 1 0.00
49 118 0.45
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
Found at i:24290627 original size:96 final size:96
Alignment explanation
Indices: 24290473--24290796 Score: 535
Period size: 96 Copynumber: 3.4 Consensus size: 96
24290463 TTTAGGATTG
*
24290473 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
24290538 AAGTGTATATATATGTGATAAGGCCTAATGGCC
64 AAGTGTATATATATGTGATAAGGCCTAATGGCC
24290571 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
24290636 GTGTATATATATGTGATAAGGCCTAATGGCC
66 GTGTATATATATGTGATAAGGCCTAATGGCC
24290667 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * * *
24290732 GTG--TATATATGTGACAGGGCCGAGTGGCC
66 GTGTATATATATGTGATAAGGCCTAATGGCC
* * * *
24290761 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
24290797 TCCCGAAGGG
Statistics
Matches: 217, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
94 54 0.25
96 142 0.65
98 21 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATATGTGATAAGGCCTAATGGCC
Found at i:24290972 original size:37 final size:37
Alignment explanation
Indices: 24290915--24290993 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24290905 CCGAGCTCTA
* * * *
24290915 AAGACCCGATGACTTTGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
24290952 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
24290989 AAGAC
1 AAGAC
24290994 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
Found at i:24297894 original size:27 final size:27
Alignment explanation
Indices: 24297845--24297896 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
24297835 GTGAGGCTGC
*
24297845 CAAATATTGTGACAAAGTAACCAGATG
1 CAAATATTGTGACAAAGCAACCAGATG
* * *
24297872 CAAATATTGTGGCTAAGCCACCAGA
1 CAAATATTGTGACAAAGCAACCAGA
24297897 ACAGATATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (27 bp):
CAAATATTGTGACAAAGCAACCAGATG
Found at i:24307921 original size:39 final size:39
Alignment explanation
Indices: 24307832--24307988 Score: 244
Period size: 39 Copynumber: 4.1 Consensus size: 39
24307822 ATTCAAGACA
*
24307832 CTGGAAATGTATCCGGGCTAAGGTCCCGCAGGCTT-GTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
24307870 CTAGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
24307909 CTGGAAATGTATCCGAGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
24307948 TTGGAAATGTATCCGGGCTAAAGTTCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
24307987 CT
1 CT
24307989 AGTAATATAA
Statistics
Matches: 107, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 32 0.30
39 75 0.70
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:24310239 original size:28 final size:28
Alignment explanation
Indices: 24310207--24310358 Score: 151
Period size: 28 Copynumber: 5.4 Consensus size: 28
24310197 GAACATAGGT
24310207 ACTGTGTGTGCGAGTTCCGTAATTGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
* * **
24310235 ACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTCCGTAATTGA-GC
* * *
24310264 ACTGTGTGTGCAAGTTTCGTAACTGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
* * **
24310292 ACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTCCGTAATTGA-GC
** **
24310321 ACTGTGTGTGCGAGTTTTGTAACCGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
24310349 ACTGTGTGTG
1 ACTGTGTGTG
24310359 TGAGATCGGT
Statistics
Matches: 97, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
28 55 0.57
29 42 0.43
ACGTcount: A:0.16, C:0.16, G:0.36, T:0.32
Consensus pattern (28 bp):
ACTGTGTGTGCGAGTTCCGTAATTGAGC
Found at i:24310272 original size:57 final size:57
Alignment explanation
Indices: 24310207--24310389 Score: 285
Period size: 57 Copynumber: 3.2 Consensus size: 57
24310197 GAACATAGGT
* *
24310207 ACTGTGTGTGCGAGTTCCGTAATTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
*
24310264 ACTGTGTGTGCAAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
* * * *
24310321 ACTGTGTGTGCGAGTTTTGTAACCGAGCACTGTGTGTGTGAGATCGGTTGTTGGGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
24310378 ACTAAGTGTGTG
1 ACT--GTGTGTG
24310390 AAATGAGATC
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
57 109 0.94
59 7 0.06
ACGTcount: A:0.16, C:0.15, G:0.37, T:0.32
Consensus pattern (57 bp):
ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
Found at i:24313497 original size:39 final size:39
Alignment explanation
Indices: 24313443--24313599 Score: 233
Period size: 39 Copynumber: 4.0 Consensus size: 39
24313433 CAAGACACTG
* *
24313443 GAAATGTATCCGGGCTAAGGTCCCGCAGGCTTTGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* *
24313482 GAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* * *
24313521 GAAATGTATCCGAGCTAAAGTCCCGCAGGCTTCGTGTTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* *
24313560 GAAATGTATCCGGGCTAAAGTTCCGCAGGCTTTGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
24313599 G
1 G
24313600 TAATATAATT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
Found at i:24315866 original size:28 final size:28
Alignment explanation
Indices: 24315834--24315985 Score: 151
Period size: 28 Copynumber: 5.4 Consensus size: 28
24315824 GAACATAGGT
24315834 ACTGTGTGTGCGAGTTCCGTAATTGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
* * **
24315862 ACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTCCGTAATTGA-GC
* * *
24315891 ACTGTGTGTGCAAGTTTCGTAACTGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
* * **
24315919 ACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTCCGTAATTGA-GC
** **
24315948 ACTGTGTGTGCGAGTTTTGTAACCGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
24315976 ACTGTGTGTG
1 ACTGTGTGTG
24315986 TGAGATCGGT
Statistics
Matches: 97, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
28 55 0.57
29 42 0.43
ACGTcount: A:0.16, C:0.16, G:0.36, T:0.32
Consensus pattern (28 bp):
ACTGTGTGTGCGAGTTCCGTAATTGAGC
Found at i:24315899 original size:57 final size:57
Alignment explanation
Indices: 24315834--24316016 Score: 285
Period size: 57 Copynumber: 3.2 Consensus size: 57
24315824 GAACATAGGT
* *
24315834 ACTGTGTGTGCGAGTTCCGTAATTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
*
24315891 ACTGTGTGTGCAAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
* * * *
24315948 ACTGTGTGTGCGAGTTTTGTAACCGAGCACTGTGTGTGTGAGATCGGTTGTTGGGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
24316005 ACTAAGTGTGTG
1 ACT--GTGTGTG
24316017 AAATGAGATC
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
57 109 0.94
59 7 0.06
ACGTcount: A:0.16, C:0.15, G:0.37, T:0.32
Consensus pattern (57 bp):
ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
Found at i:24319131 original size:39 final size:39
Alignment explanation
Indices: 24319077--24319233 Score: 233
Period size: 39 Copynumber: 4.0 Consensus size: 39
24319067 CAAGACACTG
* *
24319077 GAAATGTATCCGGGCTAAGGTCCCGCAGGCTTTGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* *
24319116 GAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* * *
24319155 GAAATGTATCCGAGCTAAAGTCCCGCAGGCTTCGTGTTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* *
24319194 GAAATGTATCCGGGCTAAAGTTCCGCAGGCTTTGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
24319233 G
1 G
24319234 TAATATAATT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
Found at i:24321508 original size:28 final size:28
Alignment explanation
Indices: 24321476--24321627 Score: 151
Period size: 28 Copynumber: 5.4 Consensus size: 28
24321466 GAACATAGGT
24321476 ACTGTGTGTGCGAGTTCCGTAATTGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
* * **
24321504 ACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTCCGTAATTGA-GC
* * *
24321533 ACTGTGTGTGCAAGTTTCGTAACTGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
* * **
24321561 ACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTCCGTAATTGA-GC
** **
24321590 ACTGTGTGTGCGAGTTTTGTAACCGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
24321618 ACTGTGTGTG
1 ACTGTGTGTG
24321628 TGAGATCGGT
Statistics
Matches: 97, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
28 55 0.57
29 42 0.43
ACGTcount: A:0.16, C:0.16, G:0.36, T:0.32
Consensus pattern (28 bp):
ACTGTGTGTGCGAGTTCCGTAATTGAGC
Found at i:24321541 original size:57 final size:57
Alignment explanation
Indices: 24321476--24321658 Score: 285
Period size: 57 Copynumber: 3.2 Consensus size: 57
24321466 GAACATAGGT
* *
24321476 ACTGTGTGTGCGAGTTCCGTAATTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
*
24321533 ACTGTGTGTGCAAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
* * * *
24321590 ACTGTGTGTGCGAGTTTTGTAACCGAGCACTGTGTGTGTGAGATCGGTTGTTGGGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
24321647 ACTAAGTGTGTG
1 ACT--GTGTGTG
24321659 AAATGAGATC
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
57 109 0.94
59 7 0.06
ACGTcount: A:0.16, C:0.15, G:0.37, T:0.32
Consensus pattern (57 bp):
ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
Found at i:24324777 original size:39 final size:39
Alignment explanation
Indices: 24324723--24324879 Score: 233
Period size: 39 Copynumber: 4.0 Consensus size: 39
24324713 CAAGACACTG
* *
24324723 GAAATGTATCCGGGCTAAGGTCCCGCAGGCTTTGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* *
24324762 GAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* * *
24324801 GAAATGTATCCGAGCTAAAGTCCCGCAGGCTTCGTGTTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* *
24324840 GAAATGTATCCGGGCTAAAGTTCCGCAGGCTTTGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
24324879 G
1 G
24324880 TAATATAATT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
Found at i:24327154 original size:28 final size:28
Alignment explanation
Indices: 24327122--24327273 Score: 151
Period size: 28 Copynumber: 5.4 Consensus size: 28
24327112 GAACATAGGT
24327122 ACTGTGTGTGCGAGTTCCGTAATTGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
* * **
24327150 ACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTCCGTAATTGA-GC
* * *
24327179 ACTGTGTGTGCAAGTTTCGTAACTGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
* * **
24327207 ACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTCCGTAATTGA-GC
** **
24327236 ACTGTGTGTGCGAGTTTTGTAACCGAGC
1 ACTGTGTGTGCGAGTTCCGTAATTGAGC
24327264 ACTGTGTGTG
1 ACTGTGTGTG
24327274 TGAGATCGGT
Statistics
Matches: 97, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
28 55 0.57
29 42 0.43
ACGTcount: A:0.16, C:0.16, G:0.36, T:0.32
Consensus pattern (28 bp):
ACTGTGTGTGCGAGTTCCGTAATTGAGC
Found at i:24327187 original size:57 final size:57
Alignment explanation
Indices: 24327122--24327304 Score: 285
Period size: 57 Copynumber: 3.2 Consensus size: 57
24327112 GAACATAGGT
* *
24327122 ACTGTGTGTGCGAGTTCCGTAATTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
*
24327179 ACTGTGTGTGCAAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
* * * *
24327236 ACTGTGTGTGCGAGTTTTGTAACCGAGCACTGTGTGTGTGAGATCGGTTGTTGGGGC
1 ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
24327293 ACTAAGTGTGTG
1 ACT--GTGTGTG
24327305 AAATGAGATC
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
57 109 0.94
59 7 0.06
ACGTcount: A:0.16, C:0.15, G:0.37, T:0.32
Consensus pattern (57 bp):
ACTGTGTGTGCGAGTTTCGTAACTGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGC
Found at i:24330416 original size:39 final size:39
Alignment explanation
Indices: 24330359--24330518 Score: 248
Period size: 39 Copynumber: 4.1 Consensus size: 39
24330349 ATTCAAGACA
* * *
24330359 CTGGAAATGTATCCGGGCTGAGGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
24330398 CTAGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
24330437 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
24330476 TTGGAAATGTATCCGGGCTAAAGTTCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
24330515 CTGG
1 CTGG
24330519 TAATATAATT
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.19, C:0.23, G:0.32, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:24336769 original size:28 final size:28
Alignment explanation
Indices: 24336674--24336769 Score: 113
Period size: 28 Copynumber: 3.4 Consensus size: 28
24336664 ACATACATAC
* *
24336674 ATATGGCCCACTAGGCCCAATCTCATAT
1 ATATGGCCCATTAGGCCCAATCTCATTT
* * *
24336702 ATATGGCACATCAGGCCCAAT-TCAAATTC
1 ATATGGCCCATTAGGCCCAATCTC--ATTT
24336731 ATATGGCCCATTAGGCCCAATCTCATTT
1 ATATGGCCCATTAGGCCCAATCTCATTT
*
24336759 ATATGGACCAT
1 ATATGGCCCAT
24336770 CCAGCCCAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
27 2 0.04
28 31 0.55
29 21 0.38
30 2 0.04
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCTCATTT
Found at i:24336776 original size:28 final size:27
Alignment explanation
Indices: 24336686--24336787 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 27
24336676 ATGGCCCACT
*
24336686 AGGCCCAATCTCATATATATGGCACATC
1 AGGCCCAATCTCATTTATATGGC-CATC
* *
24336714 AGGCCCAAT-TCAAATTCATATGGCCCATT
1 AGGCCCAATCTC--ATTTATATGG-CCATC
24336743 AGGCCCAATCTCATTTATATGGACCATCC
1 AGGCCCAATCTCATTTATATGG-CCAT-C
*
24336772 A-GCCCAAATCACATTT
1 AGGCCC-AATCTCATTT
24336788 CATTCATGCT
Statistics
Matches: 61, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
27 2 0.03
28 26 0.43
29 30 0.49
30 3 0.05
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (27 bp):
AGGCCCAATCTCATTTATATGGCCATC
Found at i:24347943 original size:27 final size:28
Alignment explanation
Indices: 24347881--24347944 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
24347871 CAGTCACTTG
*
24347881 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
24347909 CCC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
24347935 CCCACAAGGG
1 CCCACAAGGG
24347945 TATCTCGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:24347954 original size:27 final size:27
Alignment explanation
Indices: 24347924--24348057 Score: 178
Period size: 27 Copynumber: 5.0 Consensus size: 27
24347914 AGGGCAAAAT
* * *
24347924 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
24347951 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
24347978 GGTACTTCTACCCTACAAGGGTTTTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
24348005 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
24348032 AGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
24348058 TAATAATTTT
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:24349520 original size:31 final size:31
Alignment explanation
Indices: 24349472--24349599 Score: 222
Period size: 31 Copynumber: 4.2 Consensus size: 31
24349462 TTATTCTTGA
*
24349472 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
24349502 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
24349533 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
24349564 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
24349595 CATAT
1 CATAT
24349600 AAACGGTATG
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.05
31 87 0.95
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:24349677 original size:42 final size:42
Alignment explanation
Indices: 24349618--24349709 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
24349608 TGGCCCTTAG
* *
24349618 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGGAA
1 GCCCATTTCAATATCACAGGTAATGTCAATGAATGTATGCAA
24349660 GCCCATTTCAATATCACAGGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACAGGTAATGTCAATGAATGTATGCAA
*
24349702 GCCTATTT
1 GCCCATTT
24349710 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACAGGTAATGTCAATGAATGTATGCAA
Found at i:24349885 original size:25 final size:25
Alignment explanation
Indices: 24349857--24349926 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
24349847 CTCTTTTAAT
24349857 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
24349882 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
24349907 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
24349927 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:24350879 original size:27 final size:26
Alignment explanation
Indices: 24350849--24350934 Score: 68
Period size: 27 Copynumber: 3.1 Consensus size: 26
24350839 GTAATTCTAC
24350849 AAACCAAGTGTATTTCAGTAATTTTGT
1 AAACCAAGTGTATTTC-GTAATTTTGT
*
24350876 AAACC-AGTGGTATTTC-TATATTTTTT
1 AAACCAAGT-GTATTTCGTA-ATTTTGT
* *
24350902 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGTGTATTTC-GTAATTTTGT
24350932 AAA
1 AAA
24350935 TCAGGGGTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 15
0.71 0.06 0.23
Matches are distributed among these distances:
25 2 0.04
26 9 0.19
27 12 0.26
28 6 0.13
29 8 0.17
30 8 0.17
31 2 0.04
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (26 bp):
AAACCAAGTGTATTTCGTAATTTTGT
Found at i:24350954 original size:27 final size:27
Alignment explanation
Indices: 24350898--24351062 Score: 156
Period size: 27 Copynumber: 6.1 Consensus size: 27
24350888 TTTCTATATT
* *
24350898 TTTTAGAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
** *
24350926 TTTTGTAAATCAGGGGTATTTTGGCAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
24350953 TTTTACAAAT-TGAGGGTATTTCGATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * * *
24350980 TTTCACAAACCAGTGGTATTTCGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
24351007 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
*
24351034 TTTTACAAATTAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
24351061 TT
1 TT
24351063 CTATCCTACA
Statistics
Matches: 113, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.03
27 102 0.90
28 8 0.07
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:24351079 original size:81 final size:81
Alignment explanation
Indices: 24350913--24351095 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 81
24350903 GAAAGTCAAG
* **
24350913 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGCAATTTTACAAATTGAGGGTATTTCGAT
1 GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGCAATTTTACAAATTGAGGGTATTTCGAT
*
24350978 AATTTCACAAACCAGT
66 AATTTCACAAACCAGA
* * *
24350994 GGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATT-AGGGGTATTTTG
1 GGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTGGCAATTTTACAAATTGA-GGGTATTTCG
* **
24351057 GTAA-TTCTATCCTA-CAGA
64 ATAATTTC-A-CAAACCAGA
*
24351075 GGTATTTCAGTAATTTCACAA
1 GGTATTTCAGTAATTTTACAA
24351096 TCGAGGGTAA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
80 5 0.06
81 80 0.92
82 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGCAATTTTACAAATTGAGGGTATTTCGAT
AATTTCACAAACCAGA
Found at i:24351131 original size:27 final size:27
Alignment explanation
Indices: 24351094--24351291 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
24351084 GTAATTTCAC
*
24351094 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
24351121 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
24351148 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
24351175 AATCGAGGGTAAAATGGCAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
24351202 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
24351229 AATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
24351256 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
24351283 AATCGAGGG
1 AATCGAGGG
24351292 GATTTCAGTA
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:24351210 original size:81 final size:81
Alignment explanation
Indices: 24351094--24351291 Score: 299
Period size: 81 Copynumber: 2.4 Consensus size: 81
24351084 GTAATTTCAC
* * * *
24351094 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
* *
24351158 AAAACGGTAATTCTGTA
65 AAAACGATAATTCTATA
* *
24351175 AATCGAGGGTAAAATGGCAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
24351240 AAACGATAATTCTATA
66 AAACGATAATTCTATA
*
24351256 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
24351292 GATTTCAGTA
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
81 105 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.27
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGATAATTCTATA
Found at i:24351303 original size:81 final size:81
Alignment explanation
Indices: 24351137--24351311 Score: 251
Period size: 81 Copynumber: 2.2 Consensus size: 81
24351127 GGGTAAAATG
* * *
24351137 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGCAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGCAATTCTACA
* *
24351202 AATCGAGGGTAAAACG
66 AATCGAGGGGAAAACA
* *
24351218 GTAATTTTGTAAATCGAGGGTGAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
1 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGCAATTCTACA
***
24351283 AATCGAGGGGATTTCA
66 AATCGAGGGGAAAACA
*
24351299 GTAATTTGGTAAA
1 GTAATTTTGTAAA
24351312 CTAAAATATT
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGCAATTCTACA
AATCGAGGGGAAAACA
Found at i:24354429 original size:44 final size:42
Alignment explanation
Indices: 24354351--24354475 Score: 121
Period size: 42 Copynumber: 2.9 Consensus size: 42
24354341 TTCGTTATAA
** * *
24354351 GATTTCGTGTAAGACCACATCTGGGACGTTGGCATCGACT-TCT
1 GATTTCGTGTAAGACCATGTCTTGGAC-ATGGCATCGA-TATCT
*
24354394 GTTTTACGTGTAAGACCATGTCTTGGACATCGGCATCG-TATCT
1 GATTT-CGTGTAAGACCATGTCTTGGACAT-GGCATCGATATCT
*
24354437 GATTTCGTGTAAGACCCTGTC-TGGAACAGTGGCATCGAT
1 GATTTCGTGTAAGACCATGTCTTGG-ACA-TGGCATCGAT
24354476 GTTTGATTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
41 3 0.04
42 26 0.38
43 14 0.20
44 26 0.38
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.31
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTTGGACATGGCATCGATATCT
Found at i:24358745 original size:28 final size:27
Alignment explanation
Indices: 24358705--24358809 Score: 129
Period size: 28 Copynumber: 3.7 Consensus size: 27
24358695 GTAATGTGAT
*
24358705 TTGGGCGAGATGGGCCATATAAATGAGA
1 TTGGGCCA-ATGGGCCATATAAATGAGA
* *
24358733 TTGGGCCCAATGGGCCATATGAATGTAAA
1 TTGGG-CCAATGGGCCATATAAATG-AGA
*
24358762 TTGGGCTAGATGGGCCATATAAATGAGA
1 TTGGGCCA-ATGGGCCATATAAATGAGA
24358790 TTGGGCCAAGTGGGCCATAT
1 TTGGGCCAA-TGGGCCATAT
24358810 GCATGTCTGT
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
27 1 0.02
28 41 0.62
29 24 0.36
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (27 bp):
TTGGGCCAATGGGCCATATAAATGAGA
Found at i:24358782 original size:57 final size:57
Alignment explanation
Indices: 24358705--24358815 Score: 188
Period size: 57 Copynumber: 1.9 Consensus size: 57
24358695 GTAATGTGAT
24358705 TTGGGCGAGATGGGCCATATAAATGAGATTGGGCCCAA-TGGGCCATATGAATGTAAA
1 TTGGGCGAGATGGGCCATATAAATGAGATTGGG-CCAAGTGGGCCATATGAATGTAAA
* *
24358762 TTGGGCTAGATGGGCCATATAAATGAGATTGGGCCAAGTGGGCCATATGCATGT
1 TTGGGCGAGATGGGCCATATAAATGAGATTGGGCCAAGTGGGCCATATGAATGT
24358816 CTGTAAGGGT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
56 4 0.08
57 47 0.92
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.24
Consensus pattern (57 bp):
TTGGGCGAGATGGGCCATATAAATGAGATTGGGCCAAGTGGGCCATATGAATGTAAA
Found at i:24363983 original size:16 final size:16
Alignment explanation
Indices: 24363941--24363977 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
24363931 GTAGATCGGC
24363941 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
*
24363957 AAAAGCCGAAATGCTG
1 AAAAGCCGAAATGCCG
24363973 AAAAG
1 AAAAG
24363978 TTGAAAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.19, G:0.24, T:0.08
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:24364247 original size:28 final size:28
Alignment explanation
Indices: 24364207--24364310 Score: 124
Period size: 28 Copynumber: 3.7 Consensus size: 28
24364197 GTAATGTGAT
**
24364207 TTGGGCCGGATGGGCCATATAAATGAGA
1 TTGGGCCTAATGGGCCATATAAATGAGA
*
24364235 TTGGGCCTAATGGGCCATAT-AATGTGAA
1 TTGGGCCTAATGGGCCATATAAATGAG-A
*
24364263 TTGGG-CTAGATGGGCTATATAAATGAGA
1 TTGGGCCTA-ATGGGCCATATAAATGAGA
24364291 TTGGGCC-AAGTGGGCCATAT
1 TTGGGCCTAA-TGGGCCATAT
24364311 TCATGTATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
27 9 0.14
28 50 0.77
29 6 0.09
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATAAATGAGA
Found at i:24364267 original size:56 final size:56
Alignment explanation
Indices: 24364198--24364310 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 56
24364188 AGAATGAATG
* *
24364198 TAATGTGATTTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAA-TGGGCCATA
1 TAATGTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCC-AAGTGGGCCATA
* *
24364254 TAATGTGAATTGGGCTAGATGGGCTATATAAATGAGATTGGGCCAAGTGGGCCATA
1 TAATGTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCAAGTGGGCCATA
24364310 T
1 T
24364311 TCATGTATAT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 2 0.04
56 50 0.96
ACGTcount: A:0.28, C:0.12, G:0.32, T:0.27
Consensus pattern (56 bp):
TAATGTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCAAGTGGGCCATA
Found at i:24376061 original size:43 final size:41
Alignment explanation
Indices: 24376000--24376168 Score: 135
Period size: 43 Copynumber: 4.0 Consensus size: 41
24375990 ACATAAGCTT
* * * *
24376000 ATACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
* * * * * *
24376040 CATATCGGTGCCACTGTCCCAGACAAGGTTTTACACGAAATCGA
1 -ATA-CGATGCCAATGTCCCAGACATGGTCTTACATGTAATC-A
* *
24376084 TTAACGATGCCAATGTCCCAGAGATGGTCTTACACT-TAATATCA
1 AT-ACGATGCCAATGTCCCAGACATGGTCTTACA-TGT-A-ATCA
* *
24376128 ATACAATGCTAATGTCCCAGACATGGTCTTACATGTAATCA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
24376169 CATCTCGATA
Statistics
Matches: 98, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
41 7 0.07
42 7 0.07
43 76 0.78
44 5 0.05
45 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (41 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
Found at i:24379371 original size:39 final size:40
Alignment explanation
Indices: 24379313--24379391 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 40
24379303 TTTCTACTTT
* * *
24379313 TTCTTTTTCTTAATTCTCAT-TTTCGGTTTTGCTGTGTGA
1 TTCTTTTTCTTAATACTCATCTTTCAGTTTTGCGGTGTGA
* *
24379352 TTCTTTTTCTTGATACTCATCTTTTAGTTTTGCGGTGTGA
1 TTCTTTTTCTTAATACTCATCTTTCAGTTTTGCGGTGTGA
24379392 CCTGTGAGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
39 18 0.53
40 16 0.47
ACGTcount: A:0.11, C:0.15, G:0.16, T:0.57
Consensus pattern (40 bp):
TTCTTTTTCTTAATACTCATCTTTCAGTTTTGCGGTGTGA
Found at i:24380927 original size:34 final size:34
Alignment explanation
Indices: 24380833--24380929 Score: 101
Period size: 34 Copynumber: 2.9 Consensus size: 34
24380823 ATACATTTTG
*
24380833 GATACTGT-ACTGAAATGGGCTAAGGCCCACACT
1 GATACTGTCACTGATATGGGCTAAGGCCCACACT
* *
24380866 GATACTGTCACTG-TATTAGGCTAAGGCCCACAGT
1 GATACTGTCACTGATA-TGGGCTAAGGCCCACACT
* * *
24380900 -ATTATTGTGACTGATATGGGCTGAGGCCCA
1 GA-TACTGTCACTGATATGGGCTAAGGCCCA
24380930 GACCGTTCAA
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
33 10 0.19
34 41 0.77
35 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (34 bp):
GATACTGTCACTGATATGGGCTAAGGCCCACACT
Found at i:24385045 original size:43 final size:43
Alignment explanation
Indices: 24384997--24385152 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
24384987 AGCTAGTACA
24384997 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
* *
24385040 ATGCC-ACTGTCCCAGACAG-GATCTTACATGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
** * * * *
24385082 ATGCTGATGTCCCAGACATAGTCTTACACGTAATTTCAAAT-T-G
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA--TCAAATATCG
*
24385125 ATGCCAACGTCCCAGACGTGGTTTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
24385153 CGAAAATCAC
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
42 27 0.30
43 57 0.63
44 7 0.08
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:24391340 original size:49 final size:48
Alignment explanation
Indices: 24391265--24391506 Score: 250
Period size: 49 Copynumber: 4.9 Consensus size: 48
24391255 GTAGCCAAAG
* * *
24391265 TTATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGTAACCAA
1 TTATC-GGTACACGTAGTAGCCTGCACTTAGTACTACACATGTAACCAA
* * *
24391314 TTATTCAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TTA-TCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTAACC-AA
** * * * * *
24391364 CCATCTGATACACGTAGTAGCCTGCACTTAGTACAACACACGTGATCGAA
1 TTATC-GGTACACGTAGTAGCCTGCACTTAGTACTACACATGT-AACCAA
* * **
24391414 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -TTATC-GGTACACGTAGTAGCCTGCACTTAGTACTACACATGTAACCAA
*
24391464 TTATTCGGTACATGTAGTAGCCTGCACTTAGTACTACACATGT
1 TTA-TCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGT
24391507 GACCTCAGAA
Statistics
Matches: 157, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
49 76 0.48
50 46 0.29
51 35 0.22
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (48 bp):
TTATCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTAACCAA
Found at i:24401540 original size:49 final size:50
Alignment explanation
Indices: 24401484--24401721 Score: 284
Period size: 49 Copynumber: 4.8 Consensus size: 50
24401474 TAGCCAAAAC
* * *
24401484 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGATCT-AT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
* * *
24401533 TATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
* * * * * *
24401583 CATCCGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCT-AA-T
* * * *
24401634 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACC-AAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
*
24401683 TATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
24401722 CGTGACCTCA
Statistics
Matches: 159, Mismatches: 26, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
49 79 0.50
50 44 0.28
51 36 0.23
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
Found at i:24401670 original size:101 final size:98
Alignment explanation
Indices: 24401497--24401726 Score: 302
Period size: 100 Copynumber: 2.3 Consensus size: 98
24401487 CTGGTACGCA
* * * **
24401497 TAGTAGCCTGCACTTAGTACTACACATGCGATCTATTATCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCTATTATCGGGTACACATAGTAGCCTGCACTTA
**
24401562 GTACTACACATGTGACCTAACCATCCGA-TACACG
66 GTACTACACATGCAACC-AACCAT-CGAGTACACG
*
24401596 TAGTAGCCTGCACTTAGTACTACACACGTGAT-TGAAGTTATCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCT--A-TTATCGGGTACACATAGTAGCCTGCAC
** *
24401660 TTAGTACTACACATGCAACCAATTATCTAGTACACG
63 TTAGTACTACACATGCAACCAACCATCGAGTACACG
24401696 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
24401727 CCTCACAATA
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
98 1 0.01
99 32 0.28
100 42 0.36
101 41 0.35
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCTATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACATGCAACCAACCATCGAGTACACG
Found at i:24409661 original size:47 final size:48
Alignment explanation
Indices: 24409579--24409670 Score: 159
Period size: 47 Copynumber: 1.9 Consensus size: 48
24409569 TGAGAAAATT
24409579 CACAATGTGTTTCTTATATATATGATGTGATAATACAGATAAGATGAGC
1 CACAATGTGTTTC-TATATATATGATGTGATAATACAGATAAGATGAGC
*
24409628 CACAATGTGTTTC-CTATATATGATGTGATAATACAGATAAGAT
1 CACAATGTGTTTCTATATATATGATGTGATAATACAGATAAGAT
24409671 CCTTTATCTA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
47 29 0.69
49 13 0.31
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (48 bp):
CACAATGTGTTTCTATATATATGATGTGATAATACAGATAAGATGAGC
Found at i:24412629 original size:162 final size:162
Alignment explanation
Indices: 24412436--24412757 Score: 581
Period size: 162 Copynumber: 2.0 Consensus size: 162
24412426 CACACAAGCC
*
24412436 ATAACACGGGCGTGACATGGCCGAGTGGGGGGGCAGGCTCCAGGGAGACGGGCGTGTGCTCGGCC
1 ATAACACGGGCGTGACATGGCCGAGTGGGGGGGCACGCTCCAGGGAGACGGGCGTGTGCTCGGCC
* *
24412501 ATGTGAATACCTCTGTAGGTTCAAAATGAAAAATAAAGTCCAATAATTCAACACGGGTAAAGGAC
66 ATGTGAATACCCCTGTAGGTTCAAAATGAAAAATAAAGTCCAATAATTCAACACGAGTAAAGGAC
* *
24412566 ACGGGAATGTCCAAAGCACATGGGCGTGTGCA
131 ACGAGAATGTCCAAAGCACACGGGCGTGTGCA
*
24412598 ATAACACGGGCGTGACATGGCCGAGTGGGGGGGCACGCTCCAGGGAGACGGGCGTGTGCTTGGCC
1 ATAACACGGGCGTGACATGGCCGAGTGGGGGGGCACGCTCCAGGGAGACGGGCGTGTGCTCGGCC
24412663 ATGTGAATACCCCTGTAGGTTCAAAATGAAAAATAAAGTCCAATAATTCAACACGAGTAAAGGAC
66 ATGTGAATACCCCTGTAGGTTCAAAATGAAAAATAAAGTCCAATAATTCAACACGAGTAAAGGAC
*
24412728 ACGAGCATGTCCAAAGCACACGGGCGTGTG
131 ACGAGAATGTCCAAAGCACACGGGCGTGTG
24412758 AGGCTTAAAC
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
162 153 1.00
ACGTcount: A:0.30, C:0.21, G:0.32, T:0.17
Consensus pattern (162 bp):
ATAACACGGGCGTGACATGGCCGAGTGGGGGGGCACGCTCCAGGGAGACGGGCGTGTGCTCGGCC
ATGTGAATACCCCTGTAGGTTCAAAATGAAAAATAAAGTCCAATAATTCAACACGAGTAAAGGAC
ACGAGAATGTCCAAAGCACACGGGCGTGTGCA
Found at i:24414546 original size:17 final size:17
Alignment explanation
Indices: 24414520--24414553 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24414510 CATGAATATG
24414520 TCTGTAGAACCTATGGA
1 TCTGTAGAACCTATGGA
*
24414537 TCTGTTGAACCTATGGA
1 TCTGTAGAACCTATGGA
24414554 GTTTGTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (17 bp):
TCTGTAGAACCTATGGA
Found at i:24438217 original size:28 final size:28
Alignment explanation
Indices: 24438152--24438302 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
24438142 GAGATTGGCG
* * * *
24438152 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
24438181 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
24438209 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
24438237 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
24438265 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
24438292 CTGAGTGTGCG
1 CTAAGTGTGCG
24438303 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.21
28 74 0.65
29 15 0.13
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:24442256 original size:13 final size:13
Alignment explanation
Indices: 24442238--24442262 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24442228 CCAAGTACAC
24442238 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
24442251 GCCCGTGTCCTT
1 GCCCGTGTCCTT
24442263 CACAAGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:24445582 original size:48 final size:48
Alignment explanation
Indices: 24445460--24445584 Score: 162
Period size: 48 Copynumber: 2.6 Consensus size: 48
24445450 TGAGATTATA
* * * * *
24445460 TGTAAGACCATGTTTGGGACATAGCACCGGTGATGATATATGTGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATATGTGCCTG
*
24445508 TGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATGTGTGCCAT-
1 TGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATATGTGCC-TG
* *
24445556 TGTAAGACCATGTCTGGAACACGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
24445585 ACGATGATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 67 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATATGTGCCTG
Found at i:24445592 original size:48 final size:48
Alignment explanation
Indices: 24445491--24445597 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 48
24445481 TAGCACCGGT
* * * * **
24445491 GATGATATATGTGTCTGTGTAAGACCATGTCTGGGACATGGCATCGGT
1 GATGATATGTGTGCCTGTGTAAGACCATGTCTGGAACACGGCATCGAC
*
24445539 AATGATATGTGTGCCAT-TGTAAGACCATGTCTGGAACACGGCATCGAC
1 GATGATATGTGTGCC-TGTGTAAGACCATGTCTGGAACACGGCATCGAC
24445587 GATGATATGTG
1 GATGATATGTG
24445598 GATTCATGTA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
48 49 0.98
49 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (48 bp):
GATGATATGTGTGCCTGTGTAAGACCATGTCTGGAACACGGCATCGAC
Found at i:24462531 original size:39 final size:39
Alignment explanation
Indices: 24462480--24462662 Score: 303
Period size: 39 Copynumber: 4.7 Consensus size: 39
24462470 TGTGTGAGAT
*
24462480 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
** *
24462519 TTATATAGGGGCTAAGTCCCAAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
*
24462558 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
* *
24462597 TTATATCCGGGCTAAATCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
24462636 TTATATCCGGGCTAAGTCCCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCA
24462663 ATTATGTTGG
Statistics
Matches: 133, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 133 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
Found at i:24466515 original size:20 final size:19
Alignment explanation
Indices: 24466479--24466529 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
24466469 AAGGGCTATT
*
24466479 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
24466498 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
24466518 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
24466530 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:24467336 original size:49 final size:49
Alignment explanation
Indices: 24467281--24467453 Score: 231
Period size: 49 Copynumber: 3.5 Consensus size: 49
24467271 TACAAGCTAG
*
24467281 TGTAAGACCTGTCTGGGACATGGCGTCGGCACTGATAGATGAGAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGGCACTGATAGATGAGAGCCAA
* * *
24467330 TGTAAGACCTGTCTAGGACATGGCATCGACACCGATAGATGAGAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGGCACTGATAGATGAGAGCCAA
* * * *
24467379 TGTAAGACCTGTCTGGGACATGACATCGGC-CTCGATATATGAAAGTCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGGCACT-GATAGATGAGAGCCAA
* * *
24467428 TATAAGATCTATCTGGGACATGGCAT
1 TGTAAGACCTGTCTGGGACATGGCAT
24467454 TGACTTTAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 1 0.01
49 107 0.99
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGGCACTGATAGATGAGAGCCAA
Found at i:24485806 original size:33 final size:33
Alignment explanation
Indices: 24485764--24485830 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
24485754 GTTTTCAGAA
24485764 GCTAAAGTCGACTTTGATTGAAA-CACCTGTACT
1 GCTAAAGTCGACTTTGATT-AAAGCACCTGTACT
* *
24485797 GCTAAAGTCGACTTTGGTTAAAGCACTTGTACT
1 GCTAAAGTCGACTTTGATTAAAGCACCTGTACT
24485830 G
1 G
24485831 ACACAGCCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 3 0.10
33 28 0.90
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (33 bp):
GCTAAAGTCGACTTTGATTAAAGCACCTGTACT
Found at i:24488532 original size:43 final size:42
Alignment explanation
Indices: 24488443--24488549 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
24488433 TGTGATTACA
* *
24488443 TGTAAGACCATGTCTAGGACATTGGCATTGTATTGAGATTATG
1 TGTAAGACCATGTCTGGGACATTAGCATTGTATT-AGATTATG
*
24488486 TGTAAGACCATGTCTGGGACATTAGCATTATTAATT-GATT-TCG
1 TGTAAGACCATGTCTGGGACATTAGCATT-GT-ATTAGATTAT-G
*
24488529 TGTAAGACCTTGTCTGGGACA
1 TGTAAGACCATGTCTGGGACA
24488550 GTTGCATCGA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 1 0.02
43 52 0.91
44 1 0.02
45 3 0.05
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTAGCATTGTATTAGATTATG
Found at i:24488576 original size:43 final size:43
Alignment explanation
Indices: 24488434--24488590 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
24488424 TTACCGATAT
* * *
24488434 GTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATT--
1 GTGATAACATGTAAGACCATGTCTGGGACATTAGCA-TG-ATTAA
* * ** *
24488477 GAGATTATGTGTAAGACCATGTCTGGGACATTAGCATTATTAA
1 GTGATAACATGTAAGACCATGTCTGGGACATTAGCATGATTAA
* ** * *
24488520 TTGATTTCGTGTAAGACCTTGTCTGGGACAGTT-GCATCGA-TAA
1 GTGATAACATGTAAGACCATGTCTGGGACA-TTAGCAT-GATTAA
*
24488563 GTGATAACATGTAAGACCATATCTGGGA
1 GTGATAACATGTAAGACCATGTCTGGGA
24488591 TATGGCATTG
Statistics
Matches: 92, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 85 0.92
44 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.32
Consensus pattern (43 bp):
GTGATAACATGTAAGACCATGTCTGGGACATTAGCATGATTAA
Found at i:24493994 original size:25 final size:25
Alignment explanation
Indices: 24493948--24493995 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
24493938 TTATAATATG
* * * *
24493948 AAAATGACCGTTTTGCCTCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
24493973 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
24493996 GGGTAAATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:24494098 original size:20 final size:20
Alignment explanation
Indices: 24494032--24494098 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
24494022 ATTTTAATAA
* *
24494032 ACATGGTATGGATGATATGC
1 ACATGATATGTATGATATGC
* *
24494052 ACATGACATGTATGATGTGC
1 ACATGATATGTATGATATGC
24494072 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
24494092 ACATGAT
1 ACATGAT
24494099 GTATTTATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:24494177 original size:25 final size:24
Alignment explanation
Indices: 24494148--24494268 Score: 165
Period size: 25 Copynumber: 5.0 Consensus size: 24
24494138 GAGGAAGAGT
24494148 AAAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATG
24494172 ATAAAGGGCTTATGCCCCAGTTATG
1 A-AAAGGGCTTATGCCCCAGTTATG
*
24494197 ATAAAGGGCTTATGCCCCAGTTATT
1 A-AAAGGGCTTATGCCCCAGTTATG
*
24494222 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATG
*
24494245 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
24494269 ATGAAAAAGC
Statistics
Matches: 91, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
23 19 0.21
24 16 0.18
25 56 0.62
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATG
Found at i:24494265 original size:48 final size:49
Alignment explanation
Indices: 24494147--24494268 Score: 169
Period size: 48 Copynumber: 2.5 Consensus size: 49
24494137 GGAGGAAGAG
24494147 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
* *
24494196 GATAAAGGGCTTATGCCCCAGTTATTA-AAAGGGCTT-TGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
*
24494244 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
24494269 ATGAAAAAGC
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
47 9 0.14
48 24 0.36
49 10 0.15
50 23 0.35
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (49 bp):
TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
Found at i:24494516 original size:31 final size:31
Alignment explanation
Indices: 24494462--24494522 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
24494452 CGTTTACAGT
*
24494462 AAAGGCTTCGGCCCAGTAATATGAGATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
**
24494493 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
24494523 AAATATGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:24499134 original size:85 final size:85
Alignment explanation
Indices: 24498991--24499169 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
24498981 GGCCGGCCAT
24498991 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
24499056 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
24499076 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
24499141 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
24499161 GGGCATGGG
1 GAGCATGGG
24499170 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:24500272 original size:47 final size:47
Alignment explanation
Indices: 24500176--24500641 Score: 675
Period size: 47 Copynumber: 9.7 Consensus size: 47
24500166 CGTAGTGAAT
* *
24500176 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
** * *
24500225 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTCATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* *
24500272 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* *
24500319 ATGTGATGAATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATA--TATGTGATAAGGCCGAATGGCCA
24500368 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
24500415 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
* *
24500464 ATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
* *
24500511 ATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
24500558 ATGTGATGAATGTGAACATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCGAATGGCCA
* * *
24500607 ATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
24500642 TCCCGAAGGG
Statistics
Matches: 393, Mismatches: 17, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
47 238 0.61
48 1 0.00
49 153 0.39
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:24500354 original size:96 final size:94
Alignment explanation
Indices: 24500176--24500641 Score: 675
Period size: 96 Copynumber: 4.9 Consensus size: 94
24500166 CGTAGTGAAT
* *
24500176 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
** * *
24500241 AGTGTATATATGTGATAAGGCCTCATAGCCG
64 AGTGTATATATGTGATAAGGCCGAATGGCCA
* *
24500272 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
24500337 TGTATATGTATGTGATAAGGCCTAATGGCCG
66 TGTATA--TATGTGATAAGGCCGAATGGCCA
24500368 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
24500433 TGTATATATATGTGATAAGGCCGAATGGCCA
66 TG--TATATATGTGATAAGGCCGAATGGCCA
* *
24500464 ATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-
* *
24500528 A-TGCATATATGAGATAAGGCCGAATGGCCA
64 AGTGTATATATGTGATAAGGCCGAATGGCCA
* *
24500558 ATGTGATGAATGTGAACATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGA
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
24500623 AGTGTATAAATGTGATAAG
64 AGTGTATATATGTGATAAG
24500642 TCCCGAAGGG
Statistics
Matches: 344, Mismatches: 17, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
94 94 0.27
95 1 0.00
96 243 0.71
97 2 0.01
98 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCGAATGGCCA
Found at i:24500434 original size:143 final size:143
Alignment explanation
Indices: 24500176--24500630 Score: 702
Period size: 143 Copynumber: 3.2 Consensus size: 143
24500166 CGTAGTGAAT
*
24500176 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
** * *
24500241 AGTGTATATATGTGATAAGGCCTCATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
24500306 GGCCTAATGGCCG
131 GGCCGAATGGCCA
24500319 ATGTGATGAATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
24500384 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGAT
66 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGAT
24500449 AAGGCCGAATGGCCA
129 AAGGCCGAATGGCCA
* * *
24500464 ATGTGATGAATGTGAACA-TGTGTATG--TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ATGTGATGAATGTGAA-AGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
24500526 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATATATGTG
65 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-A-GTGTATATATGTG
24500590 ATAAGGCCGAATGGCCA
127 ATAAGGCCGAATGGCCA
* *
24500607 ATGTGATGGATGTGGAAGTGTATA
1 ATGTGATGAATGTGAAAGTGTATA
24500631 AATGTGATAA
Statistics
Matches: 290, Mismatches: 15, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
142 1 0.00
143 235 0.81
144 2 0.01
145 51 0.18
146 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGATGAATGTGAAAGTGTATATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCGAATGGCCA
Found at i:24503134 original size:38 final size:38
Alignment explanation
Indices: 24503070--24503142 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
24503060 AATCCAAGTT
*
24503070 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCAGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCAGG
* *
24503108 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCC
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCC
24503143 GGATTAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCAGG
Found at i:24503260 original size:40 final size:40
Alignment explanation
Indices: 24503198--24503437 Score: 340
Period size: 40 Copynumber: 6.0 Consensus size: 40
24503188 AGGTCTCGAC
24503198 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
24503237 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
24503277 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
24503317 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
24503357 GATATATCCGTGCTAA-ACCCCAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
24503396 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
24503436 GA
1 GA
24503438 CATGTATTCG
Statistics
Matches: 181, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 36 0.20
40 145 0.80
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:24504835 original size:85 final size:85
Alignment explanation
Indices: 24504692--24504870 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
24504682 GGCCGGCCAT
24504692 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
24504757 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
24504777 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
24504842 GTAAGGATTAATGAAATAAA
66 GTAAGGATTAATAAAATAAA
*
24504862 GGGCATGGG
1 GAGCATGGG
24504871 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:24506188 original size:47 final size:47
Alignment explanation
Indices: 24506134--24506633 Score: 670
Period size: 47 Copynumber: 10.6 Consensus size: 47
24506124 TATTTGAATA
* * *
24506134 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
24506181 AATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
24506228 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
24506277 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
24506324 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24506373 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24506420 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
24506467 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGACAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24506514 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
24506561 AATGTGAACA-TGCATATATGTG-TAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
24506607 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
24506634 TCTCGAAGGG
Statistics
Matches: 420, Mismatches: 26, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
45 1 0.00
46 40 0.10
47 288 0.69
49 90 0.21
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:24506263 original size:96 final size:94
Alignment explanation
Indices: 24506134--24506633 Score: 686
Period size: 96 Copynumber: 5.3 Consensus size: 94
24506124 TATTTGAATA
* * * *
24506134 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA-AGTATATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATAT
* * *
24506198 ATGTGATAAGGCCTAATAGCCGATGTGATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
24506228 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAA-AGTGTAT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTAT
24506292 ATATGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
*
24506324 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATA
*
24506389 TGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
24506420 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATAT
* *
24506484 GTGTGATAAGGCCGAATGGACAATGTGATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
24506514 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATAT
24506578 ATGTG-TAAGGCCGAATGGCCAATGTGATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
24506607 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
24506634 TCTCGAAGGG
Statistics
Matches: 374, Mismatches: 27, Indels: 11
0.91 0.07 0.03
Matches are distributed among these distances:
92 1 0.00
93 43 0.11
94 153 0.41
96 175 0.47
97 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:24510435 original size:43 final size:43
Alignment explanation
Indices: 24510380--24510544 Score: 142
Period size: 43 Copynumber: 3.9 Consensus size: 43
24510370 TATTGAGATG
*
24510380 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTA-T-AT
1 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATTATTAAT
*
24510421 TGAGATTAT-GTGTAAGACCATGTC-AGGGACATTGGCATTATTAAT
1 T--GATT-TCATGTAAGACCATGTCTA-GGACATTGGCATTATTAAT
* * * * * *
24510466 TGATTTCATGTAAGACCCTGTCTAGGACAGTGGTATCAATAAG
1 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATTATTAAT
** * * *
24510509 TGATAGCATGTAAGACCATATCTGGGATA-TGGCATT
1 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATT
24510545 GTACAAGCTA
Statistics
Matches: 99, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 86 0.87
44 2 0.02
45 3 0.03
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTAGGACATTGGCATTATTAAT
Found at i:24513839 original size:41 final size:43
Alignment explanation
Indices: 24513771--24513876 Score: 126
Period size: 41 Copynumber: 2.5 Consensus size: 43
24513761 TGGCATTGGT
* * * * * *
24513771 ATATGTGATTACGTGTAAAATCATGTCTGGGACATTTGCATC-
1 ATATGTGATTACATGTAAGACCCTGTCTGGGACAGTGGCATCA
* *
24513813 GTATTTGATT-CATGTAAGACCCTGTCTGGGACAGTGGCATCA
1 ATATGTGATTACATGTAAGACCCTGTCTGGGACAGTGGCATCA
24513855 ATATGTGATTACATGTAAGACC
1 ATATGTGATTACATGTAAGACC
24513877 ACGTCTACGA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
41 25 0.48
42 16 0.31
43 11 0.21
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCCTGTCTGGGACAGTGGCATCA
Found at i:24516503 original size:18 final size:18
Alignment explanation
Indices: 24516473--24516508 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
24516463 AGTTAAGTCC
24516473 GAGATTCATCGAGCTGTAT
1 GAGATTCATCGAGC-GTAT
24516492 GAGATT-ATCGAGCGTAT
1 GAGATTCATCGAGCGTAT
24516509 TGGGCCGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (18 bp):
GAGATTCATCGAGCGTAT
Found at i:24517749 original size:20 final size:21
Alignment explanation
Indices: 24517699--24517749 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
24517689 ACCCATCCCC
*
24517699 ATGCAATATGTCATACATCGT
1 ATGCAATATATCATACATCGT
24517720 AT-C-ATAATATCATACAT-GT
1 ATGCAAT-ATATCATACATCGT
24517739 ATGCAATATAT
1 ATGCAATATAT
24517750 ATAATATGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 6 0.23
20 16 0.62
21 4 0.15
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (21 bp):
ATGCAATATATCATACATCGT
Found at i:24520867 original size:43 final size:41
Alignment explanation
Indices: 24520804--24520884 Score: 99
Period size: 43 Copynumber: 1.9 Consensus size: 41
24520794 TGAGATTATG
* * *
24520804 TGTAAGACCCTGTCTGGGATAGAGGCATCGTTATGTGATAACA
1 TGTAAGACCATATCTAGGATA-AGGCATCG-TATGTGATAACA
* *
24520847 TGTAAGACCATATCTAGGATATGGCATTGTATGTGATA
1 TGTAAGACCATATCTAGGATAAGGCATCGTATGTGATA
24520885 TATGTGTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 9 0.27
42 6 0.18
43 18 0.55
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATATCTAGGATAAGGCATCGTATGTGATAACA
Done.