Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 80 of 333
Found at i:24527976 original size:25 final size:27
Alignment explanation
Indices: 24527941--24528001 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
24527931 TAGATAATGA
24527941 AAAAATAATGA-ATAAATG-AAATTTGT
1 AAAAATAATGATA-AAATGAAAATTTGT
24527967 AAAAA-AATGATAAAATGAAAATTTGATT
1 AAAAATAATGATAAAATGAAAATTTG--T
24527995 AAAAATA
1 AAAAATA
24528002 TTCAAGTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
25 10 0.33
26 13 0.43
28 6 0.20
29 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (27 bp):
AAAAATAATGATAAAATGAAAATTTGT
Found at i:24534751 original size:15 final size:15
Alignment explanation
Indices: 24534731--24534763 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
24534721 CTATTAAATT
24534731 ACACAATGTAAGTTA
1 ACACAATGTAAGTTA
24534746 ACACAATGTAAGTTA
1 ACACAATGTAAGTTA
24534761 ACA
1 ACA
24534764 TGATATTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.15, G:0.12, T:0.24
Consensus pattern (15 bp):
ACACAATGTAAGTTA
Found at i:24535231 original size:43 final size:43
Alignment explanation
Indices: 24535170--24535255 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
24535160 GTCACAGGCA
* *
24535170 TCGCATTCACAATGAACTCAAACCACTCAACGAGCTGGAATGC
1 TCGCATCCACAATGAACTCAAACCACTCAACGAGCTCGAATGC
* **
24535213 TCGCATCCATAATGAACTCGGACCACTCAACGAGCTCGAATGC
1 TCGCATCCACAATGAACTCAAACCACTCAACGAGCTCGAATGC
24535256 CACATATCTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.33, C:0.31, G:0.17, T:0.19
Consensus pattern (43 bp):
TCGCATCCACAATGAACTCAAACCACTCAACGAGCTCGAATGC
Found at i:24538782 original size:29 final size:29
Alignment explanation
Indices: 24538714--24538844 Score: 95
Period size: 29 Copynumber: 4.6 Consensus size: 29
24538704 AACCCCTACA
* * * *
24538714 TACATGCATATGTCCCA-CTAGGCCTAATC
1 TACATTCATATGGCCCATC-AGGCCCAATT
*
24538743 T-CATTTATATGGCCCATCAGGCCCAATT
1 TACATTCATATGGCCCATCAGGCCCAATT
* *
24538771 TACATTCATATGGCCCACCAGACCCAATT
1 TACATTCATATGGCCCATCAGGCCCAATT
* * * * * *
24538800 CATATTCATTTGTCCCATTAGGCCCAAAT
1 TACATTCATATGGCCCATCAGGCCCAATT
* * *
24538829 CACCTTTATATGGCCC
1 TACATTCATATGGCCC
24538845 GTTATGCCCA
Statistics
Matches: 79, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
28 21 0.27
29 58 0.73
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.30
Consensus pattern (29 bp):
TACATTCATATGGCCCATCAGGCCCAATT
Found at i:24548780 original size:43 final size:43
Alignment explanation
Indices: 24548719--24548800 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
24548709 CAGGCATCGT
*
24548719 ATCCATAATGAACTCGGACCAGTCAACGAGCTCGGATGCTCTC
1 ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCTCTC
24548762 ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
1 ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
24548801 CACATATCTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (43 bp):
ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCTCTC
Found at i:24550478 original size:29 final size:29
Alignment explanation
Indices: 24550415--24550482 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
24550405 TAATCAACCG
24550415 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
24550444 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
24550473 CGCACACTTA
1 CGCACACTTA
24550483 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:24550595 original size:174 final size:174
Alignment explanation
Indices: 24550304--24550631 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
24550294 AACTCAAGGT
* *
24550304 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
24550369 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
24550434 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
24550478 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
24550543 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
24550608 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
24550632 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:24550623 original size:29 final size:30
Alignment explanation
Indices: 24550584--24550662 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
24550574 CTTAATAATC
24550584 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
24550614 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
24550643 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
24550663 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:24555782 original size:27 final size:26
Alignment explanation
Indices: 24555752--24555828 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 26
24555742 GTCAACTGAT
*
24555752 ACAGATAATCGTGGCAGTGCCACAAGA
1 ACAGATAAT-GTGGCAGAGCCACAAGA
* *
24555779 ACAGATATATGTGACAGAGCCACGAGA
1 ACAGATA-ATGTGGCAGAGCCACAAGA
* * *
24555806 TCAAATAATTGTGGCATAGCCAC
1 ACAGATAA-TGTGGCAGAGCCAC
24555829 CAGGCTGCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 38 0.93
28 2 0.05
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
ACAGATAATGTGGCAGAGCCACAAGA
Found at i:24555999 original size:28 final size:26
Alignment explanation
Indices: 24555937--24555999 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
24555927 AAAGTACCCC
** * *
24555937 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
24555963 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
24555991 TAGGGGTAT
1 TAGGGGTAT
24556000 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:24557022 original size:16 final size:16
Alignment explanation
Indices: 24556997--24557029 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24556987 CTAAAAGAAA
24556997 AAGAAAAGATGAGCAG
1 AAGAAAAGATGAGCAG
*
24557013 AAGAAGAGATGAGCAG
1 AAGAAAAGATGAGCAG
24557029 A
1 A
24557030 GAATTTGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.33, T:0.06
Consensus pattern (16 bp):
AAGAAAAGATGAGCAG
Found at i:24563614 original size:27 final size:26
Alignment explanation
Indices: 24563579--24563687 Score: 103
Period size: 27 Copynumber: 4.0 Consensus size: 26
24563569 AGCATGGCTG
* *
24563579 CCAGAACAGATAATATGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
* *
24563605 CCAGATACAGATAATCGTGGCAGTGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
*
24563633 CAAGAACAGATATATGTGACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* *
24563660 CCA-AATCAGATAATTGTGGCATAGCCA
1 CCAGAA-CAGATAA-TGTGACAGAGCCA
24563687 C
1 C
24563688 TAGGACGCTT
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
26 8 0.12
27 46 0.68
28 14 0.21
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:24565770 original size:53 final size:54
Alignment explanation
Indices: 24565687--24565843 Score: 205
Period size: 53 Copynumber: 2.9 Consensus size: 54
24565677 TTCTTTAAAT
* * *
24565687 TTTCCTATATGATGTCATAACCTACCAGTTACAG-TCTTACACGATATGGTCTTG
1 TTTCC-ATATGATGTCATAACCCACTAGTTACAGATCTTACACGATATGGTCTTC
* *
24565741 TTTCCATATGATGTCATAACCCACTAGTTAC-GATCTTACACAATATGGTATTC
1 TTTCCATATGATGTCATAACCCACTAGTTACAGATCTTACACGATATGGTCTTC
* *
24565794 TTTCCATATGATGTCATAACCCA-TCAGTTA-AGATCTTATATGATATGGTC
1 TTTCCATATGATGTCATAACCCACT-AGTTACAGATCTTACACGATATGGTC
24565844 GTATTTAGTG
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
52 2 0.02
53 84 0.92
54 5 0.05
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (54 bp):
TTTCCATATGATGTCATAACCCACTAGTTACAGATCTTACACGATATGGTCTTC
Found at i:24566880 original size:16 final size:16
Alignment explanation
Indices: 24566859--24566893 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
24566849 TTAAGGTTGG
24566859 AATTGAATAGAGCTGT
1 AATTGAATAGAGCTGT
24566875 AATTGAATAGAGCTGT
1 AATTGAATAGAGCTGT
24566891 AAT
1 AAT
24566894 CAGTAATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (16 bp):
AATTGAATAGAGCTGT
Found at i:24567133 original size:58 final size:58
Alignment explanation
Indices: 24567071--24567194 Score: 151
Period size: 58 Copynumber: 2.1 Consensus size: 58
24567061 TTTTAATAAG
* * * *
24567071 ATTATTATTAAAAATAATTTGATAAATATAATAAATATTTTAACCATATT-TTAACATA
1 ATTATTATTAAAAATAATTTAATAAA-ATAATAAATAATTTAACAAAATTCTTAACATA
* * * * *
24567129 ATTATTATTAAATATAATTTAATAAAATGATATATAATTTAATAAAATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
24567187 ATTATTAT
1 ATTATTAT
24567195 ATGAATTAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
57 17 0.30
58 39 0.70
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
Found at i:24572307 original size:24 final size:22
Alignment explanation
Indices: 24572280--24572428 Score: 81
Period size: 22 Copynumber: 6.6 Consensus size: 22
24572270 CATCATACAT
**
24572280 GCTCTTTCGAGTCATGGTCAGTAA
1 GCTCTTTCGAG-C-TGAACAGTAA
*
24572304 GCTCCTTCGAGCTGAACAGTAA
1 GCTCTTTCGAGCTGAACAGTAA
*
24572326 GCTCTATT-GAGCTGAAACGGTAA
1 GCTCT-TTCGAGCTG-AACAGTAA
* * * *
24572349 GCTCTAAT-AAGTTGAATAGTAA
1 GCTCT-TTCGAGCTGAACAGTAA
*
24572371 GCTCTATT-GAGCTGAACAATAA
1 GCTCT-TTCGAGCTGAACAGTAA
** *
24572393 GCTCCAAT-GAGCTGAAATAGTAA
1 GCT-CTTTCGAGCTG-AACAGTAA
*
24572416 GCTCTTACGAGCT
1 GCTCTTTCGAGCT
24572429 ATGGTGAGTC
Statistics
Matches: 98, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
22 52 0.53
23 36 0.37
24 10 0.10
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (22 bp):
GCTCTTTCGAGCTGAACAGTAA
Found at i:24572326 original size:22 final size:21
Alignment explanation
Indices: 24572298--24572420 Score: 104
Period size: 22 Copynumber: 5.5 Consensus size: 21
24572288 GAGTCATGGT
24572298 CAGTAAGCTCCT-TCGAGCTGAA
1 CAGTAAGCT-CTAT-GAGCTGAA
24572320 CAGTAAGCTCTATTGAGCTGAAA
1 CAGTAAGCTCTA-TGAGCTG-AA
* * *
24572343 CGGTAAGCTCTAATAAGTTGAA
1 CAGTAAGCTCT-ATGAGCTGAA
*
24572365 TAGTAAGCTCTATTGAGCTGAA
1 CAGTAAGCTCTA-TGAGCTGAA
* *
24572387 CAATAAGCTCCAATGAGCTGAAA
1 CAGTAAGCT-CTATGAGCTG-AA
*
24572410 TAGTAAGCTCT
1 CAGTAAGCTCT
24572421 TACGAGCTAT
Statistics
Matches: 81, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
21 3 0.04
22 48 0.59
23 29 0.36
24 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (21 bp):
CAGTAAGCTCTATGAGCTGAA
Found at i:24572351 original size:45 final size:43
Alignment explanation
Indices: 24572298--24572420 Score: 131
Period size: 45 Copynumber: 2.7 Consensus size: 43
24572288 GAGTCATGGT
*
24572298 CAGTAAGCTCCTTCGAGCTGAACAGTAAGCTCTATTGAGCTGAAA
1 CAGTAAGCTCCTT-GAGCTGAATAGTAAGCTCTATTGAGCTG-AA
* * *
24572343 CGGTAAGCT-CTAATAAGTTGAATAGTAAGCTCTATTGAGCTGAA
1 CAGTAAGCTCCT--TGAGCTGAATAGTAAGCTCTATTGAGCTGAA
* *
24572387 CAATAAGCTCCAATGAGCTGAAATAGTAAGCTCT
1 CAGTAAGCTCC-TTGAGCTG-AATAGTAAGCTCT
24572421 TACGAGCTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
44 16 0.25
45 47 0.73
46 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (43 bp):
CAGTAAGCTCCTTGAGCTGAATAGTAAGCTCTATTGAGCTGAA
Found at i:24572428 original size:45 final size:45
Alignment explanation
Indices: 24572312--24572420 Score: 148
Period size: 45 Copynumber: 2.4 Consensus size: 45
24572302 AAGCTCCTTC
* ** *
24572312 GAGCTGAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTAAT
1 GAGCTGAATAGTAAGCTCTATTGAGCTGAAACAATAAGCTCCAAT
* *
24572357 AAGTTGAATAGTAAGCTCTATTGAGCTG-AACAATAAGCTCCAAT
1 GAGCTGAATAGTAAGCTCTATTGAGCTGAAACAATAAGCTCCAAT
24572401 GAGCTGAAATAGTAAGCTCT
1 GAGCTG-AATAGTAAGCTCT
24572421 TACGAGCTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 17 0.31
45 38 0.69
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (45 bp):
GAGCTGAATAGTAAGCTCTATTGAGCTGAAACAATAAGCTCCAAT
Found at i:24578131 original size:27 final size:27
Alignment explanation
Indices: 24578100--24578277 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24578090 TAAATTTTAC
24578100 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24578127 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24578153 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24578181 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24578209 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24578236 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24578263 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24578278 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24578214 original size:82 final size:81
Alignment explanation
Indices: 24578101--24578256 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24578091 AAATTTTACA
* *
24578101 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24578165 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24578182 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24578247 TGCGAGTTGA
65 TGCGAATTGA
24578257 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24578268 original size:82 final size:81
Alignment explanation
Indices: 24578097--24578277 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24578087 GATTAAATTT
* *
24578097 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24578162 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24578178 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24578242 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24578260 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24578278 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24586382 original size:27 final size:27
Alignment explanation
Indices: 24586351--24586528 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24586341 TAAATTTTAC
24586351 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24586378 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24586404 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24586432 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24586460 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24586487 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24586514 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24586529 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24586465 original size:82 final size:81
Alignment explanation
Indices: 24586352--24586507 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24586342 AAATTTTACA
* *
24586352 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24586416 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24586433 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24586498 TGCGAGTTGA
65 TGCGAATTGA
24586508 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24586519 original size:82 final size:81
Alignment explanation
Indices: 24586348--24586528 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24586338 GATTAAATTT
* *
24586348 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24586413 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24586429 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24586493 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24586511 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24586529 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24588721 original size:40 final size:41
Alignment explanation
Indices: 24588647--24588723 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 41
24588637 ACAGGGGTTT
* * *
24588647 TCACACGGCCGAGCACATGCCCGTGTCCTGGCCTGTGTCTC
1 TCACACGGCCGAGCACACGCCCGTGTCATCGCCTGTGTCTC
* *
24588688 TCACACGGCCTAG-ACACGCCTGTGTCATCGCCTGTG
1 TCACACGGCCGAGCACACGCCCGTGTCATCGCCTGTG
24588724 ACCAAAAACC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 19 0.61
41 12 0.39
ACGTcount: A:0.14, C:0.38, G:0.26, T:0.22
Consensus pattern (41 bp):
TCACACGGCCGAGCACACGCCCGTGTCATCGCCTGTGTCTC
Found at i:24590054 original size:51 final size:51
Alignment explanation
Indices: 24589999--24590098 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
24589989 CTACCACATA
*
24589999 ACATGTAA-CACATCCATAATGAACTCGGACCTCTCAACAAGCTTGGATGTT
1 ACATG-AATCACATCCATAATGAACTCAGACCTCTCAACAAGCTTGGATGTT
* * * *
24590050 ACATGAATCGCATCCATTATGAACTCAGACCTTTCAACGAGCTTGGATG
1 ACATGAATCACATCCATAATGAACTCAGACCTCTCAACAAGCTTGGATG
24590099 CTCGCATCCA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 2 0.05
51 41 0.95
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (51 bp):
ACATGAATCACATCCATAATGAACTCAGACCTCTCAACAAGCTTGGATGTT
Found at i:24595029 original size:49 final size:49
Alignment explanation
Indices: 24594964--24595196 Score: 254
Period size: 49 Copynumber: 4.7 Consensus size: 49
24594954 AGATATTGTG
* *
24594964 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACAAGATAACT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-AGATAACT
* * *
24595014 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAAC-T
* * * * ***
24595064 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAACT
* * *
24595114 AGGTCACGTGTGTACTACTAAGTGCAGGCTACTACGTGTACTGGATAA-T
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-AGATAACT
* *
24595163 TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
24595197 TGCGTACCAG
Statistics
Matches: 153, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
49 73 0.48
50 42 0.27
51 38 0.25
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGATAACT
Found at i:24595154 original size:101 final size:98
Alignment explanation
Indices: 24594967--24595196 Score: 293
Period size: 100 Copynumber: 2.3 Consensus size: 98
24594957 TATTGTGAGG
* * * *
24594967 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACAAGATAACTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACAAGATAACTGGTCACATGTGTACTACT
*
24595032 AAGTGCAGGCTACTATGTGTACCT-GATAACTTCGA
66 AAGTGCAGGCTACTACGTGTA-CTGGATAA-TT-GA
*** *
24595067 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATC-AGATGGTTAGGTCACGTGTGTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CAAGATAACT-GGTCACATGTGTACTA
*
24595131 CTAAGTGCAGGCTACTACGTGTACTGGATAATTGG
64 CTAAGTGCAGGCTACTACGTGTACTGGATAATTGA
* *
24595166 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
24595197 TGCGTACCAG
Statistics
Matches: 115, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
99 30 0.26
100 44 0.38
101 41 0.36
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACAAGATAACTGGTCACATGTGTACTACT
AAGTGCAGGCTACTACGTGTACTGGATAATTGA
Found at i:24600740 original size:49 final size:51
Alignment explanation
Indices: 24600663--24600805 Score: 191
Period size: 49 Copynumber: 2.8 Consensus size: 51
24600653 TATTGTGAGG
* * *
24600663 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATAA-TT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTCGA
* * * *
24600712 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTCGA
* *
24600763 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
24600806 GGTTAGTGTG
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 39 0.49
50 2 0.03
51 38 0.48
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (51 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTCGA
Found at i:24602453 original size:40 final size:40
Alignment explanation
Indices: 24602405--24602610 Score: 299
Period size: 40 Copynumber: 5.2 Consensus size: 40
24602395 GGACTAAGAT
*
24602405 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
24602445 CCGAAGGCATTTGTGCTAGTGATTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
24602485 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
24602525 CCAAAGGCATTTGTGCTAGTGGCTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
24602565 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
24602604 CCGAAGG
1 CCGAAGG
24602611 TACTTGGGTT
Statistics
Matches: 153, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.09
40 137 0.90
41 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:24607165 original size:68 final size:68
Alignment explanation
Indices: 24607015--24607172 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
24607005 CTAGCCAATT
* * *
24607015 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
24607080 TTTA
65 CATA
* * *
24607084 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
24607146 CTACATA
63 C-ACATA
*
24607153 GTATCTCGTAGCTTTCTTGT
1 -TATCTCGTAGCTCTCTTGT
24607173 ACACATGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
68 35 0.47
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:24611606 original size:39 final size:40
Alignment explanation
Indices: 24611562--24611818 Score: 349
Period size: 40 Copynumber: 6.5 Consensus size: 40
24611552 AAACCAAGTA
** * *
24611562 CCTTCGGGGTTTAG-CCGGATATAGCT-TCTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
24611601 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
24611641 CCTTCGGGACTTAGCCCGGTTATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
24611681 CCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
24611721 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
24611761 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
24611801 CCTTCGGG-CTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
24611819 TTATCAATCC
Statistics
Matches: 200, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 23 0.12
40 177 0.88
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:24611643 original size:40 final size:40
Alignment explanation
Indices: 24611589--24611822 Score: 380
Period size: 40 Copynumber: 5.9 Consensus size: 40
24611579 GATATAGCTT
*
24611589 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
24611629 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
24611669 CTAGCACAATTGCCTTCGAGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
24611709 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
24611749 CTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
24611789 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
24611823 CAATCCGAAT
Statistics
Matches: 181, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 13 0.07
40 168 0.93
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:24619578 original size:40 final size:40
Alignment explanation
Indices: 24619524--24619753 Score: 363
Period size: 40 Copynumber: 5.8 Consensus size: 40
24619514 GATATAGCTT
* *
24619524 CTCGCTCAAATGCCTTCGGGACTTAGCCTGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
24619564 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
24619604 CTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
24619644 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
** *
24619684 CTCGCACAAATGCCTTCGGGACTTAGCCTTGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
24619724 CTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGG
24619754 CTATCAATCC
Statistics
Matches: 177, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 8 0.05
40 169 0.95
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:24637691 original size:85 final size:85
Alignment explanation
Indices: 24637586--24637758 Score: 330
Period size: 85 Copynumber: 2.0 Consensus size: 85
24637576 TCAACTTGCC
24637586 TTTTCGGCCAAATCTCAGAATCTTCTTCCATGGTGACACCTTCAAGAACACTTTATCACCCACCT
1 TTTTCGGCCAAATCTCAGAATCTTCTTCCATGGTGACACCTTCAAGAACACTTTATCACCCACCT
24637651 GAAATTCAATCTC-TTTTCTT
66 GAAATTCAATC-CATTTTCTT
24637671 TTTTCGGCCAAATCTCAGAATCTTCTTCCATGGTGACACCTTCAAGAACACTTTATCACCCACCT
1 TTTTCGGCCAAATCTCAGAATCTTCTTCCATGGTGACACCTTCAAGAACACTTTATCACCCACCT
24637736 GAAATTCAATCCATTTTCTT
66 GAAATTCAATCCATTTTCTT
24637756 TTT
1 TTT
24637759 AAGTCTACAT
Statistics
Matches: 87, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
84 1 0.01
85 86 0.99
ACGTcount: A:0.26, C:0.29, G:0.09, T:0.36
Consensus pattern (85 bp):
TTTTCGGCCAAATCTCAGAATCTTCTTCCATGGTGACACCTTCAAGAACACTTTATCACCCACCT
GAAATTCAATCCATTTTCTT
Found at i:24644998 original size:25 final size:26
Alignment explanation
Indices: 24644942--24644999 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 26
24644932 CCGAAATTCT
24644942 GATA-TCATGGCCCGAAGCCAAATCAACC
1 GATATTCATGGCCCGAAGCCAAAT--A-C
24644970 GATATTCATGGCCCGAAGCCAAAT-C
1 GATATTCATGGCCCGAAGCCAAATAC
24644995 GATAT
1 GATAT
24645000 AACTCGCACC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.21
28 4 0.14
29 19 0.66
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (26 bp):
GATATTCATGGCCCGAAGCCAAATAC
Found at i:24649937 original size:51 final size:51
Alignment explanation
Indices: 24649845--24649942 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 51
24649835 AAATATTATG
* * * *
24649845 TTAATTTGATCTTTATTTAATAAATTTAATCGGTAACATTTACACATTTTA
1 TTAATATGATCATTATTTAACAAATTTAATCAGTAACATTTACACATTTTA
* * * *
24649896 TTAATATGATCATTATTTAACAAATTTAGTTATTAATATTTACACAT
1 TTAATATGATCATTATTTAACAAATTTAATCAGTAACATTTACACAT
24649943 CCCATCAACA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 39 1.00
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (51 bp):
TTAATATGATCATTATTTAACAAATTTAATCAGTAACATTTACACATTTTA
Found at i:24650160 original size:31 final size:31
Alignment explanation
Indices: 24650107--24650168 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
24650097 ATTTTTAAAA
* *
24650107 GAACTAATTTACTTAATATCAAAATTGAGAG
1 GAACCAATTTACTCAATATCAAAATTGAGAG
* *
24650138 GAACCAATTTGCTCAATTTCAAAATTGAGAG
1 GAACCAATTTACTCAATATCAAAATTGAGAG
24650169 AGTTAAGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.31
Consensus pattern (31 bp):
GAACCAATTTACTCAATATCAAAATTGAGAG
Found at i:24650619 original size:18 final size:21
Alignment explanation
Indices: 24650584--24650626 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
24650574 AATTTTATCC
24650584 TAAAAAATTATATAAAAAT-A
1 TAAAAAATTATATAAAAATAA
*
24650604 TAAAACATTAT-T-AAAATAA
1 TAAAAAATTATATAAAAATAA
24650623 TAAA
1 TAAA
24650627 TTAATAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 6 0.29
20 10 0.48
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (21 bp):
TAAAAAATTATATAAAAATAA
Found at i:24651685 original size:41 final size:41
Alignment explanation
Indices: 24651639--24651722 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
24651629 TTTCAGGGGT
24651639 TCTAGGTATTCATCTCCTACTACGGGACAAAGAACGAAAAG
1 TCTAGGTATTCATCTCCTACTACGGGACAAAGAACGAAAAG
24651680 TCTAGGTATTCATCTCCTACTACGGGACAAAGAACGAAAAG
1 TCTAGGTATTCATCTCCTACTACGGGACAAAGAACGAAAAG
24651721 TC
1 TC
24651723 AGACAAGACA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.23
Consensus pattern (41 bp):
TCTAGGTATTCATCTCCTACTACGGGACAAAGAACGAAAAG
Found at i:24651914 original size:17 final size:17
Alignment explanation
Indices: 24651892--24651925 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24651882 AAGATTGTCC
*
24651892 AAAAATGGCAGAGAATA
1 AAAAATGACAGAGAATA
24651909 AAAAATGACAGAGAATA
1 AAAAATGACAGAGAATA
24651926 TTGTAGGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.21, T:0.12
Consensus pattern (17 bp):
AAAAATGACAGAGAATA
Found at i:24654023 original size:13 final size:13
Alignment explanation
Indices: 24654005--24654034 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
24653995 TAAACAGGCC
24654005 ATGTGATATGGTT
1 ATGTGATATGGTT
24654018 ATGTGATATGGTT
1 ATGTGATATGGTT
24654031 ATGT
1 ATGT
24654035 TACGAGTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (13 bp):
ATGTGATATGGTT
Found at i:24654080 original size:42 final size:42
Alignment explanation
Indices: 24654021--24654104 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
24654011 TATGGTTATG
24654021 TGATATGGTTATGTTACGAGTTAGTAC-AGTTATGTACAAAAA
1 TGATATGGTTATGTTACGAGTTAGTACAAG-TATGTACAAAAA
*
24654063 TGATATGGTTATGTTACGAGTTGGTACAAGTATGTACAAAAA
1 TGATATGGTTATGTTACGAGTTAGTACAAGTATGTACAAAAA
24654105 ATTCATAAGT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
42 38 0.95
43 2 0.05
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.35
Consensus pattern (42 bp):
TGATATGGTTATGTTACGAGTTAGTACAAGTATGTACAAAAA
Found at i:24659055 original size:49 final size:47
Alignment explanation
Indices: 24658988--24659341 Score: 546
Period size: 47 Copynumber: 7.4 Consensus size: 47
24658978 CGGCCAAGAC
24658988 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
24659035 AAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
24659084 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
24659131 AAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
24659180 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
24659227 AAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * * * * * *
24659274 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
24659321 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
24659342 TCCCGAAGGG
Statistics
Matches: 283, Mismatches: 20, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 193 0.68
49 90 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
Found at i:24659152 original size:96 final size:96
Alignment explanation
Indices: 24658988--24659341 Score: 572
Period size: 96 Copynumber: 3.7 Consensus size: 96
24658978 CGGCCAAGAC
* *
24658988 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
24659053 ATAAGGCCTAATAGCCGATGTGATGAATGTG
66 ATAAGGCCTAATAGCCGATGTGATGAATGTG
24659084 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
24659149 ATAAGGCCTAATAGCCGATGTGATGAATGTG
66 ATAAGGCCTAATAGCCGATGTGATGAATGTG
* * *
24659180 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
* *
24659243 ATGAGGCCTAATGGCCGATGTGATGAATGTG
66 ATAAGGCCTAATAGCCGATGTGATGAATGTG
* * * * *
24659274 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
24659337 ATAAG
66 ATAAG
24659342 TCCCGAAGGG
Statistics
Matches: 240, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 93 0.39
95 1 0.00
96 146 0.61
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
ATAAGGCCTAATAGCCGATGTGATGAATGTG
Found at i:24663348 original size:20 final size:20
Alignment explanation
Indices: 24663323--24663361 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24663313 ACAATTTCAA
24663323 TTATTTGAC-ACATTTACAAC
1 TTATTTGACAAC-TTTACAAC
*
24663343 TTATTTTACAACTTTACAA
1 TTATTTGACAACTTTACAA
24663362 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.44
Consensus pattern (20 bp):
TTATTTGACAACTTTACAAC
Found at i:24696439 original size:14 final size:14
Alignment explanation
Indices: 24696403--24696441 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
24696393 CCATGGGCAT
24696403 TTCTTTTCTTT-TA
1 TTCTTTTCTTTATA
24696416 TTCTTTTCTTTATA
1 TTCTTTTCTTTATA
24696430 -TCTCTTTCTTTA
1 TTCT-TTTCTTTA
24696442 ACATTGTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (14 bp):
TTCTTTTCTTTATA
Found at i:24697778 original size:23 final size:23
Alignment explanation
Indices: 24697752--24697801 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
24697742 ACCACATTGG
*
24697752 TAAGGCTACATATTCATACATCA
1 TAAGGATACATATTCATACATCA
* * *
24697775 TAAGTATAGATATTTATACATCA
1 TAAGGATACATATTCATACATCA
24697798 TAAG
1 TAAG
24697802 TATAGACCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (23 bp):
TAAGGATACATATTCATACATCA
Found at i:24697802 original size:23 final size:23
Alignment explanation
Indices: 24697761--24697807 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
24697751 GTAAGGCTAC
24697761 ATATTCATACATCATAAGTATAG
1 ATATTCATACATCATAAGTATAG
*
24697784 ATATTTATACATCATAAGTATAG
1 ATATTCATACATCATAAGTATAG
24697807 A
1 A
24697808 CCTATAATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.36
Consensus pattern (23 bp):
ATATTCATACATCATAAGTATAG
Found at i:24698788 original size:27 final size:27
Alignment explanation
Indices: 24698686--24698789 Score: 77
Period size: 27 Copynumber: 3.9 Consensus size: 27
24698676 AATACTTTAG
*
24698686 TTTACCAAATTA-CTGAAATACCCTCGA
1 TTTACAAAATTATC-GAAATACCCTCGA
* ** * *
24698713 CTTGTAAAATTA-CCAAAGTACCCCCGA
1 TTTACAAAATTATCGAAA-TACCCTCGA
* ***
24698740 TTTACAGAATTATCGTTTTACCCTCGA
1 TTTACAAAATTATCGAAATACCCTCGA
*
24698767 TTTACAAAATTATTGAAATACCC
1 TTTACAAAATTATCGAAATACCC
24698790 CTGTAGGGTA
Statistics
Matches: 55, Mismatches: 20, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
26 3 0.05
27 51 0.93
28 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTATCGAAATACCCTCGA
Found at i:24698804 original size:27 final size:27
Alignment explanation
Indices: 24698774--24698914 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 27
24698764 CGATTTACAA
*
24698774 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
24698801 AATTACTGAAATACCCCTGTAGGGTTG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
24698828 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* ** *
24698855 AAATACCAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
24698882 AATTAGC-GAGATACCCTTGTGGGGTAA
1 AATTA-CTGAAATACCCCTGTAGGGTAG
24698909 AATTAC
1 AATTAC
24698915 CATTTGCCCC
Statistics
Matches: 97, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 95 0.98
28 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:24698832 original size:54 final size:54
Alignment explanation
Indices: 24698774--24698916 Score: 189
Period size: 54 Copynumber: 2.6 Consensus size: 54
24698764 CGATTTACAA
* * ** *
24698774 AATTATTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTTG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTGG
*
24698828 AATTACTGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTGG
* * *
24698882 AATTAGC-GAGATACCCTTGTGGGGTAAAATTACCA
1 AATTA-CTGAAATACCCTTGTAGGGTAGAATTACCA
24698917 TTTGCCCCTA
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 77 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTGG
Found at i:24699340 original size:22 final size:22
Alignment explanation
Indices: 24699309--24699366 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
24699299 ATTTTGAGTG
*
24699309 TGGCTTTGTGCCAACCT-ACATA
1 TGGCTCTGTGCCAACCTGA-ATA
*
24699331 TGGCTCTGTGCCAACCTGATTA
1 TGGCTCTGTGCCAACCTGAATA
*
24699353 TGGCTGTGTGCCAA
1 TGGCTCTGTGCCAA
24699367 ACGTACTTGC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (22 bp):
TGGCTCTGTGCCAACCTGAATA
Found at i:24699699 original size:6 final size:6
Alignment explanation
Indices: 24699690--24699820 Score: 90
Period size: 6 Copynumber: 21.3 Consensus size: 6
24699680 TTGCATTCAC
* * * *
24699690 ATTCTG ATTCTG ATTCT- ATTACTTG ATACTG ATTCTG ATTCAG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
24699740 ATTCTG ATTCTG ATTCTG ATTTTG ATTCTG ATTCTG -TCACCAG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
24699789 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
24699821 AATGTTTCTT
Statistics
Matches: 96, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
5 6 0.06
6 80 0.83
7 6 0.06
8 4 0.04
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:24699721 original size:25 final size:25
Alignment explanation
Indices: 24699690--24699775 Score: 97
Period size: 25 Copynumber: 3.5 Consensus size: 25
24699680 TTGCATTCAC
24699690 ATTCTGATTCTGATTCTATTACTTG
1 ATTCTGATTCTGATTCTATTACTTG
* * * *
24699715 ATACTGATTCTGATTC-AGTCACCTA
1 ATTCTGATTCTGATTCTA-TTACTTG
24699740 ATTCTGATTCTGATTCTGATT--TTG
1 ATTCTGATTCTGATTCT-ATTACTTG
24699764 ATTCTGATTCTG
1 ATTCTGATTCTG
24699776 TCACCAGATT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
24 14 0.28
25 34 0.68
26 1 0.02
27 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTATTACTTG
Found at i:24699767 original size:43 final size:43
Alignment explanation
Indices: 24699695--24699811 Score: 157
Period size: 43 Copynumber: 2.7 Consensus size: 43
24699685 TTCACATTCT
**
24699695 GATTCTGATTCT-ATTACTTGATACTGATTCTGATTCAGTCACCTA
1 GATTCTGATTCTGATT-C-TGATTTTGATTCTGATTCAGTCACC-A
*
24699740 -ATTCTGATTCTGATTCTGATTTTGATTCTGATTCTGTCACCA
1 GATTCTGATTCTGATTCTGATTTTGATTCTGATTCAGTCACCA
*
24699782 GATTCTGATTCTGATTCTCATTTTGATTCT
1 GATTCTGATTCTGATTCTGATTTTGATTCT
24699812 AGTTCTGATA
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
42 1 0.02
43 50 0.76
44 12 0.18
45 3 0.05
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.47
Consensus pattern (43 bp):
GATTCTGATTCTGATTCTGATTTTGATTCTGATTCAGTCACCA
Found at i:24701874 original size:27 final size:27
Alignment explanation
Indices: 24701772--24701875 Score: 75
Period size: 27 Copynumber: 3.9 Consensus size: 27
24701762 AATATTTTAG
* *
24701772 TTTACCAAATTATTGAAATACCCTCGA
1 TTTACAAAATTATCGAAATACCCTCGA
* ** * *
24701799 CTTGTAAAATTA-CCAAAGTACCCCCGA
1 TTTACAAAATTATCGAAA-TACCCTCGA
* * ***
24701826 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTATCGAAATACCCTCGA
*
24701853 TTTACAAAATTATTGAAATACCC
1 TTTACAAAATTATCGAAATACCC
24701876 CTGTAGGGTA
Statistics
Matches: 53, Mismatches: 22, Indels: 4
0.67 0.28 0.05
Matches are distributed among these distances:
26 3 0.06
27 49 0.92
28 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTATCGAAATACCCTCGA
Found at i:24701890 original size:27 final size:27
Alignment explanation
Indices: 24701867--24701968 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 27
24701857 CAAAATTATT
*
24701867 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
24701894 GAAATATCCCTGTAGGGTTGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
24701921 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
24701948 AAAATACCCCTTTAGGGTAGA
1 GAAATACCCCTGTAGGGTAGA
24701969 CGGATTTGAT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:24703884 original size:40 final size:40
Alignment explanation
Indices: 24703795--24704058 Score: 335
Period size: 40 Copynumber: 6.7 Consensus size: 40
24703785 TTGAATGCTG
* * *
24703795 TCCGGGCTAAGTCTCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* *
24703834 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATT-CTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TTACTAAA
24703874 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24703913 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24703953 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24703993 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
24704034 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24704059 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 12, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 50 0.25
40 141 0.69
41 11 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24704076 original size:120 final size:118
Alignment explanation
Indices: 24703847--24704091 Score: 316
Period size: 120 Copynumber: 2.1 Consensus size: 118
24703837 GGACTAAGAT
* *
24703847 CCGAAGGCATTTGTGCGAGATTCTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATTCTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAA
* ** * *
24703912 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
66 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATC
*
24703966 CCGAAGGCATTTGTGCGAG-TTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT
1 CCGAAGGCATTTGTGCGAGATT-CTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACT
* * * *
24704030 ATAA-CCGGGCTATGTCCTGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATT
64 A-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATC
24704085 CCGAAGG
1 CCGAAGG
24704092 TACGTGATTT
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
118 2 0.02
119 48 0.44
120 58 0.53
121 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATTCTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAA
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATC
Found at i:24705548 original size:22 final size:22
Alignment explanation
Indices: 24705517--24705574 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
24705507 ATTCTGATTG
*
24705517 TGGCTTTGTGCCAACCT-ACATA
1 TGGCTCTGTGCCAACCTGA-ATA
*
24705539 TGGCTCTGTGCCAACCTGATTA
1 TGGCTCTGTGCCAACCTGAATA
*
24705561 TGGCTGTGTGCCAA
1 TGGCTCTGTGCCAA
24705575 ACGTACTTGC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (22 bp):
TGGCTCTGTGCCAACCTGAATA
Found at i:24705907 original size:6 final size:6
Alignment explanation
Indices: 24705898--24705977 Score: 65
Period size: 6 Copynumber: 13.0 Consensus size: 6
24705888 TTGCATTCAC
* * * *
24705898 ATTCTG ATTCTG ATTCTG -TTAGTTG ATGCTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
24705948 ATTCTG ATTCTG ATTCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
24705978 TCACCTGGTT
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
5 3 0.05
6 49 0.84
7 4 0.07
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:24705929 original size:25 final size:25
Alignment explanation
Indices: 24705901--24705964 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
24705891 CATTCACATT
* ** *
24705901 CTGATTCTGATTCTGTTAGTTGATG
1 CTGATTCTGATTCTGTCACCTAATG
*
24705926 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATG
24705951 CTGATTCTGATTCT
1 CTGATTCTGATTCT
24705965 AATTCTGATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATG
Found at i:24705951 original size:19 final size:19
Alignment explanation
Indices: 24705929--24705993 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
24705919 GTTGATGCTG
24705929 ATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGTCACCTA
*
24705948 ATTCTGATTCTG--ATTCTA
1 ATTCTGATTCTGTCA-CCTA
*
24705966 ATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGTCACCTA
*
24705985 GTTCTGATT
1 ATTCTGATT
24705994 ATGATTCTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
17 1 0.03
18 15 0.38
19 22 0.56
20 1 0.03
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (19 bp):
ATTCTGATTCTGTCACCTA
Found at i:24705970 original size:37 final size:37
Alignment explanation
Indices: 24705929--24706007 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24705919 GTTGATGCTG
*
24705929 ATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTA
1 ATTCTGATTCTGTCACCTAATTCTGATTATGATTCTA
**
24705966 ATTCTGATTCTGTCACCTGGTTCTGATTATGATTCTA
1 ATTCTGATTCTGTCACCTAATTCTGATTATGATTCTA
*
24706003 GTTCT
1 ATTCT
24706008 AATAATGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (37 bp):
ATTCTGATTCTGTCACCTAATTCTGATTATGATTCTA
Found at i:24707161 original size:47 final size:46
Alignment explanation
Indices: 24706957--24707183 Score: 219
Period size: 44 Copynumber: 4.8 Consensus size: 46
24706947 AACATAGGGT
* * *
24706957 ATAATGCCAATGCCATGTCCCAGACATGGTCTTACTCTAGCTCTCACA
1 ATAATGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATA
* * * *
24707005 TATCCATGCTGATGCATGTCCCAGACATGTCTTACACTAGCACATC-TC
1 -AT-AATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC-TCATA
* *
24707053 GT-A-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATC
1 ATAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATA
* * * *
24707097 TTAATGCCAATGCCATGTCCCAGGCATGGTCTTACACTGGCTCTCATA
1 ATAATGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATA
* *
24707145 AT-GTGGTCGATGCATGTCCCAGACATGTCTTACACTAGC
1 ATAAT-GCCGATGCATGTCCCAGACATGTCTTACACTAGC
24707184 ACACACACAT
Statistics
Matches: 149, Mismatches: 21, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
43 2 0.01
44 37 0.25
45 2 0.01
46 18 0.12
47 28 0.19
48 37 0.25
49 18 0.12
50 7 0.05
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
ATAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATA
Found at i:24710490 original size:16 final size:16
Alignment explanation
Indices: 24710469--24710510 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
24710459 TTATTGACAC
*
24710469 TTCTTATTGTTTTTTT
1 TTCTTATTGTTTGTTT
24710485 TTCTTATT-TTTGTTT
1 TTCTTATTGTTTGTTT
*
24710500 TTATT-TTGTTT
1 TTCTTATTGTTT
24710511 ACATTATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 2 0.09
15 13 0.57
16 8 0.35
ACGTcount: A:0.07, C:0.05, G:0.07, T:0.81
Consensus pattern (16 bp):
TTCTTATTGTTTGTTT
Found at i:24737941 original size:14 final size:13
Alignment explanation
Indices: 24737922--24737951 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
24737912 TTTAATTGAA
24737922 TTAGTTAATTAAGT
1 TTAGTTAATT-AGT
24737936 TTAGTTAATTAGT
1 TTAGTTAATTAGT
24737949 TTA
1 TTA
24737952 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:24740705 original size:93 final size:93
Alignment explanation
Indices: 24740597--24740767 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
24740587 GCCCCTAAGT
*
24740597 GAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24740662 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
24740690 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24740755 CGAGTTCGGATGC
66 CGAGTTCGGATGC
24740768 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:24740764 original size:46 final size:46
Alignment explanation
Indices: 24740592--24740764 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
24740582 AACCCGCCCC
* * *
24740592 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
24740638 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
24740686 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
24740731 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
24740765 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:24742408 original size:48 final size:48
Alignment explanation
Indices: 24742334--24742588 Score: 307
Period size: 48 Copynumber: 5.3 Consensus size: 48
24742324 AAGTACCAAC
* * * * *
24742334 ACATGGTCTTACATGAATC-CACATATCATTGCCAATGCCATGTCCCAG
1 ACATGGTCTTACA-CAAGCACATATATCATCGCCGATGCCATGTCCCAG
** *
24742382 ACATGGTCTTACACAAGCACATATATCATCATCGATGCCATGTCCCAC
1 ACATGGTCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAG
* * *
24742430 ACATGGTCTTACAC-AGACAAATATATCATTGCCGATGCCATGTCCTAG
1 ACATGGTCTTACACAAG-CACATATATCATCGCCGATGCCATGTCCCAG
* *
24742478 ACATGGTCTTACACAAGCACATATATCATCGTCGATGCCATGTCCCAA
1 ACATGGTCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAG
* * * * * *
24742526 ACATGGTCTTACACAGGCATATAAATCATCACCGATGCCATCTCCTAG
1 ACATGGTCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAG
24742574 ACATGGTCTTACACA
1 ACATGGTCTTACACA
24742589 TGCGCACTTC
Statistics
Matches: 177, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
47 5 0.03
48 170 0.96
49 2 0.01
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (48 bp):
ACATGGTCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAG
Found at i:24742496 original size:96 final size:96
Alignment explanation
Indices: 24742356--24742588 Score: 376
Period size: 96 Copynumber: 2.4 Consensus size: 96
24742346 ATGAATCCAC
* *
24742356 ATATCATTGCCAATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCATCGATGCC
1 ATATCATTGCCGATGCCATGTCCTAGACATGGTCTTACACAAGCACATATATCATCATCGATGCC
*
24742421 ATGTCCCACACATGGTCTTACACAGACAAAT
66 ATGTCCCAAACATGGTCTTACACAGACAAAT
*
24742452 ATATCATTGCCGATGCCATGTCCTAGACATGGTCTTACACAAGCACATATATCATCGTCGATGCC
1 ATATCATTGCCGATGCCATGTCCTAGACATGGTCTTACACAAGCACATATATCATCATCGATGCC
* *
24742517 ATGTCCCAAACATGGTCTTACACAGGCATAT
66 ATGTCCCAAACATGGTCTTACACAGACAAAT
* ** *
24742548 AAATCATCACCGATGCCATCTCCTAGACATGGTCTTACACA
1 ATATCATTGCCGATGCCATGTCCTAGACATGGTCTTACACA
24742589 TGCGCACTTC
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 127 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (96 bp):
ATATCATTGCCGATGCCATGTCCTAGACATGGTCTTACACAAGCACATATATCATCATCGATGCC
ATGTCCCAAACATGGTCTTACACAGACAAAT
Found at i:24757239 original size:52 final size:52
Alignment explanation
Indices: 24757161--24757268 Score: 216
Period size: 52 Copynumber: 2.1 Consensus size: 52
24757151 TTCTGTGGAT
24757161 GTTTGCAAACTGCAACTGTGTATATAATATCAGTGCTGGTAAATGAAGTTGG
1 GTTTGCAAACTGCAACTGTGTATATAATATCAGTGCTGGTAAATGAAGTTGG
24757213 GTTTGCAAACTGCAACTGTGTATATAATATCAGTGCTGGTAAATGAAGTTGG
1 GTTTGCAAACTGCAACTGTGTATATAATATCAGTGCTGGTAAATGAAGTTGG
24757265 GTTT
1 GTTT
24757269 TGGTTAGAGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 56 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (52 bp):
GTTTGCAAACTGCAACTGTGTATATAATATCAGTGCTGGTAAATGAAGTTGG
Found at i:24765715 original size:41 final size:41
Alignment explanation
Indices: 24765655--24765838 Score: 198
Period size: 41 Copynumber: 4.6 Consensus size: 41
24765645 CGAGCTTGGG
24765655 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAAT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAAT
* * *
24765696 TTCGAAGGGCTTTTAAGCCAGTACTAATAACCGAACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAAT
* **
24765737 TTCGAAGGGCTTTTGAGCCAGTG-TCAT-ACCGAACTTGGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAAT
* * * * **
24765776 TCCGAAGGGCCTTCGAGCCAGTGGCCTAAT--CCGAGCTTGGT
1 TTCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAAT
*
24765817 CTCGAAGGGC-TTTGAGCCAGTG
1 TTCGAAGGGCTTTTGAGCCAGTG
24765839 TTAAGAATCG
Statistics
Matches: 125, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
39 31 0.25
40 14 0.11
41 77 0.62
42 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAAT
Found at i:24765796 original size:80 final size:80
Alignment explanation
Indices: 24765641--24765839 Score: 215
Period size: 80 Copynumber: 2.5 Consensus size: 80
24765631 TCGGGGTGTA
* * * *
24765641 AATCCGAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAATTTCGAAGGGC
1 AATCCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTG-TAATAACCGAACTTAATTCCGAAGGGC
* *
24765706 TTTTAAGCCAGT-ACT
65 CTTCAAGCCAGTGACT
* **
24765721 AATAACCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCAT-ACCGAACTTGGTTCCGAAGGG
1 AAT--CCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTCCGAAGGG
* *
24765785 CCTTCGAGCCAGTGGCCT
64 CCTTCAAGCCAGT-GACT
* * *
24765803 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTGT
1 AATCCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGT
24765840 TAAGAATCGT
Statistics
Matches: 101, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
79 13 0.13
80 49 0.49
81 3 0.03
82 36 0.36
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
AATCCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTCCGAAGGGCC
TTCAAGCCAGTGACT
Found at i:24787116 original size:79 final size:82
Alignment explanation
Indices: 24787005--24787189 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
24786995 GCTACTCGTT
* * *
24787005 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
24787068 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
24787085 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
24787148 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
24787165 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24787190 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:24787189 original size:40 final size:40
Alignment explanation
Indices: 24786986--24787189 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
24786976 CGGAATTTAA
** *
24786986 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
24787026 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
24787066 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
24787105 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
24787145 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
24787185 CCGGA
1 CCGGA
24787190 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:24794994 original size:40 final size:40
Alignment explanation
Indices: 24794957--24795140 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
24794947 GCTACTCGTT
*
24794957 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
24794997 CAATTGCCTTTGGAACTTAACCC-GTATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGT-TATAGTAACTCGCA
* *
24795037 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
24795076 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
24795117 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
24795141 ACATCATTCA
Statistics
Matches: 116, Mismatches: 20, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.27
40 71 0.61
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:24795068 original size:79 final size:82
Alignment explanation
Indices: 24794957--24795141 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 82
24794947 GCTACTCGTT
* * * *
24794957 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTTGGAACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCG
* * *
24795021 TATTTAGTAAC-TCGCA
66 GATATAGTAACTTAGCA
* * **
24795037 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCG
* *
24795100 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
24795117 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24795142 CATCATTCAA
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 55 0.62
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCG
GATATAGTAACTTAGCA
Found at i:24798789 original size:40 final size:40
Alignment explanation
Indices: 24798745--24798967 Score: 237
Period size: 40 Copynumber: 5.6 Consensus size: 40
24798735 GCTCCTCGTT
*
24798745 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
24798785 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
* *
24798825 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
*
24798865 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAAT-TCGCA
* * * * *
24798904 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
24798945 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
24798968 ACAGCATTCA
Statistics
Matches: 161, Mismatches: 12, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
38 3 0.02
39 44 0.27
40 105 0.65
41 8 0.05
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:24798929 original size:79 final size:80
Alignment explanation
Indices: 24798745--24798968 Score: 289
Period size: 79 Copynumber: 2.8 Consensus size: 80
24798735 GCTCCTCGTT
* * *
24798745 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
24798809 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
*
24798825 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
24798889 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * *
24798904 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
24798965 CGGA
63 CGGA
24798969 CAGCATTCAA
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
78 12 0.09
79 60 0.47
80 55 0.43
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:24809531 original size:66 final size:66
Alignment explanation
Indices: 24809409--24809532 Score: 158
Period size: 66 Copynumber: 1.9 Consensus size: 66
24809399 ATTCGGATAG
* *
24809409 CTGTCAGGTGCAACGACAATTTTGAACGCAATTTGGAATTAACCCATACAGCGACATTGAAGACT
1 CTGTCAGGTGCAACGACAATTTTGAACGCAATCTGGAATTAACCCATACAACGACATTGAAGACT
24809474 T
66 T
** * * * * * *
24809475 CTGTCAGGTGCGGCGATAATTTTGGATGCAATCTGGAATTAACTCATGCAATGACATT
1 CTGTCAGGTGCAACGACAATTTTGAACGCAATCTGGAATTAACCCATACAACGACATT
24809533 AATGCAATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (66 bp):
CTGTCAGGTGCAACGACAATTTTGAACGCAATCTGGAATTAACCCATACAACGACATTGAAGACT
T
Found at i:24810550 original size:17 final size:17
Alignment explanation
Indices: 24810528--24810561 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24810518 CACTAACATT
*
24810528 AAAATGTAATGACAATG
1 AAAATGCAATGACAATG
24810545 AAAATGCAATGACAATG
1 AAAATGCAATGACAATG
24810562 TATACTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.09, G:0.18, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATG
Found at i:24810961 original size:21 final size:21
Alignment explanation
Indices: 24810935--24810985 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
24810925 TTATTTTTAG
*
24810935 CAACTTCCTCTTCTTCAGCAAT
1 CAACTTCCTCTTCTGCAGC-AT
*
24810957 -AACTTCATCTTCTGCAGCAT
1 CAACTTCCTCTTCTGCAGCAT
24810977 CAACTTCCT
1 CAACTTCCT
24810986 TCTAAACAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.24, C:0.35, G:0.06, T:0.35
Consensus pattern (21 bp):
CAACTTCCTCTTCTGCAGCAT
Found at i:24813749 original size:27 final size:26
Alignment explanation
Indices: 24813691--24813803 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
24813681 AGGAAGCGTC
* *
24813691 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
24813719 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
24813746 CTGGTGGCTCTGCCACGATTATTTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
24813774 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
24813800 CTGG
1 CTGG
24813804 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 7 0.09
27 37 0.49
28 32 0.42
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:24813776 original size:55 final size:54
Alignment explanation
Indices: 24813691--24813803 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
24813681 AGGAAGCGTC
*
24813691 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
24813746 CTGGTGGCTCTGCCAC-GATTATTTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
24813800 CTGG
1 CTGG
24813804 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 19 0.37
55 33 0.63
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:24818429 original size:28 final size:28
Alignment explanation
Indices: 24818398--24818465 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
24818388 TCAATGCCTT
* *
24818398 GCACACTTAGTGCCATACTCGATATCTC
1 GCACACTAAGTGCCACACTCGATATCTC
*
24818426 GCACACTAAGTGCCACACTCGATATCTT
1 GCACACTAAGTGCCACACTCGATATCTC
24818454 GCACACTAAGTG
1 GCACACTAAGTG
24818466 TCGTACATAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (28 bp):
GCACACTAAGTGCCACACTCGATATCTC
Found at i:24818516 original size:40 final size:40
Alignment explanation
Indices: 24818454--24818548 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
24818444 TCGATATCTT
* * **
24818454 GCACACTAAGTGTCGTACATAGCTGGAA-CTATCTCAAATC
1 GCACACTAAGTGCCATACATAGC-CAAAGCTATCTCAAATC
* * *
24818494 GCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATC
1 GCACACTAAGTGCCATACATAGCCAAAGCTATCTCAAATC
*
24818534 CCACACTAAGTGCCA
1 GCACACTAAGTGCCA
24818549 CAAATAGTCT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.04
40 44 0.96
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (40 bp):
GCACACTAAGTGCCATACATAGCCAAAGCTATCTCAAATC
Found at i:24825986 original size:28 final size:28
Alignment explanation
Indices: 24825955--24826023 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 28
24825945 AAATGCCTCG
* * *
24825955 CACACTAAGTTCCATACTCGATGTCTCA
1 CACACTAAGTGCCACACTCGATATCTCA
*
24825983 CACACTAAGTGCCACACTCGATATCTCG
1 CACACTAAGTGCCACACTCGATATCTCA
24826011 CACACTAAGTGCC
1 CACACTAAGTGCC
24826024 GTACATAGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.29, C:0.35, G:0.13, T:0.23
Consensus pattern (28 bp):
CACACTAAGTGCCACACTCGATATCTCA
Found at i:24826072 original size:40 final size:40
Alignment explanation
Indices: 24826008--24826104 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
24825998 ACTCGATATC
* * * *
24826008 TCGCACACTAAGTGCCGTACATAGCCGAAGTTATTTCAAA
1 TCGCACACTAAGTGCCATACATAGCCAAAGCTATGTCAAA
* * *
24826048 TTGCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATACATAGCCAAAGCTATGTCAAA
*
24826088 TCGTACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
24826105 CAAATAGCTA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCAAAGCTATGTCAAA
Found at i:24830005 original size:17 final size:17
Alignment explanation
Indices: 24829983--24830018 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
24829973 GCCCTGTGTA
24829983 ACTCCCTGACTTGGATC
1 ACTCCCTGACTTGGATC
24830000 ACTCCCTGACTTGGATC
1 ACTCCCTGACTTGGATC
24830017 AC
1 AC
24830019 ACGGCCAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (17 bp):
ACTCCCTGACTTGGATC
Found at i:24832778 original size:144 final size:144
Alignment explanation
Indices: 24832483--24832770 Score: 567
Period size: 144 Copynumber: 2.0 Consensus size: 144
24832473 CTAACATTGA
24832483 AAATTTTCAATTCATTGTCCCCTATGGCCAGCCACCCTATTTCTAAGGGTCTAATTGCCCTTTAA
1 AAATTTTCAATTCATTGTCCCCTATGGCCAGCCACCCTATTTCTAAGGGTCTAATTGCCCTTTAA
24832548 AGGCCCCCAATATTTATTCCCTAGCTATTTGACAACTTTACCTATCAATTCAGGACTTTTAAACT
66 AGGCCCCCAATATTTATTCCCTAGCTATTTGACAACTTTACCTATCAATTCAGGACTTTTAAACT
24832613 TTATGCGATTTAGT
131 TTATGCGATTTAGT
*
24832627 AAATTTTCAATTCATTGTCCCCTATGGCCGGCCACCCTATTTCTAAGGGTCTAATTGCCCTTTAA
1 AAATTTTCAATTCATTGTCCCCTATGGCCAGCCACCCTATTTCTAAGGGTCTAATTGCCCTTTAA
24832692 AGGCCCCCAATATTTATTCCCTAGCTATTTGACAACTTTACCTATCAATTCAGGACTTTTAAACT
66 AGGCCCCCAATATTTATTCCCTAGCTATTTGACAACTTTACCTATCAATTCAGGACTTTTAAACT
24832757 TTATGCGATTTAGT
131 TTATGCGATTTAGT
24832771 CCTTTTTCGC
Statistics
Matches: 143, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
144 143 1.00
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (144 bp):
AAATTTTCAATTCATTGTCCCCTATGGCCAGCCACCCTATTTCTAAGGGTCTAATTGCCCTTTAA
AGGCCCCCAATATTTATTCCCTAGCTATTTGACAACTTTACCTATCAATTCAGGACTTTTAAACT
TTATGCGATTTAGT
Found at i:24838148 original size:41 final size:41
Alignment explanation
Indices: 24838102--24838186 Score: 125
Period size: 41 Copynumber: 2.1 Consensus size: 41
24838092 ATGGCCGAGC
*
24838102 ACACGCCCATGTCCCTGGCCCGTATCCTTCACACGACAATG
1 ACACGCCCATGTCCCTGGCCCGTATCCTTAACACGACAATG
* * * *
24838143 ACACGCTCATGTCCCTGGCCCGTGTCCTTAACACGGCCATG
1 ACACGCCCATGTCCCTGGCCCGTATCCTTAACACGACAATG
24838184 ACA
1 ACA
24838187 TGTCCGTGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.21, C:0.40, G:0.19, T:0.20
Consensus pattern (41 bp):
ACACGCCCATGTCCCTGGCCCGTATCCTTAACACGACAATG
Found at i:24839281 original size:46 final size:45
Alignment explanation
Indices: 24839185--24839400 Score: 183
Period size: 46 Copynumber: 4.7 Consensus size: 45
24839175 GCATATCTGT
* * *
24839185 GCCGATGCCATGTCCCATACATGGTCTTACACTGAC-TCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTC-AAG
* *
24839231 GCTGATGCATGTCCCAGACATGTCTTACATTGGCTTACATCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCAAG
* * * * * * *
24839277 GCTGATGCATGTCTCAAACATG-CTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCAAG
24839322 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG-TTC-TCAT-AATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATC-TCAA---G
24839370 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
24839401 AGCTCACACA
Statistics
Matches: 141, Mismatches: 18, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
44 11 0.08
45 41 0.29
46 58 0.41
47 15 0.11
48 16 0.11
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCAAG
Found at i:24846431 original size:40 final size:41
Alignment explanation
Indices: 24846342--24846420 Score: 131
Period size: 42 Copynumber: 1.9 Consensus size: 41
24846332 ACATGGCCAT
*
24846342 ACAACACGCCCATGGGGCTGACCATGTGTCACACACGACAAC
1 ACAACACACCCATGGGGCTGACCATGTGTCACACACGAC-AC
*
24846384 ACAACACACCCATGGGGCTGACCGTGTGTCACACACG
1 ACAACACACCCATGGGGCTGACCATGTGTCACACACG
24846421 GCCTAGACAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (41 bp):
ACAACACACCCATGGGGCTGACCATGTGTCACACACGACAC
Found at i:24847375 original size:95 final size:95
Alignment explanation
Indices: 24847210--24847430 Score: 242
Period size: 95 Copynumber: 2.3 Consensus size: 95
24847200 AAATGCCAAC
* *
24847210 GCCATGTCCCAGACATGGTCTTACACTAGCTAGCACATCAAAGTCGATGCCATGTCCCAGATAGG
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTAGCACATAAAAGTCGATGCCATGTCCCAGATAAG
* *
24847275 TCTTACAC-AGGCTATGATCTAT-CG-GTGTCGAT
65 TCTTACACTA-GCT-TG-TATATCCGAG-GCCGAT
* *
24847307 GCCATGTCCCAGACAGGTCTTACACT-GAC-A-CACTTAACAAG-CTGTTGCCATGTCCCAGATA
1 GCCATGTCCCAGACAGGTCTTACACTAG-CTAGCACATAA-AAGTC-GATGCCATGTCCCAGATA
24847368 AGTCTTACACTAGCTTGTATATCCCGAGGCCGAT
63 AGTCTTACACTAGCTTGTATAT-CCGAGGCCGAT
*
24847402 G-CATGTCCCAGACATGTCTTACACTAGCT
1 GCCATGTCCCAGACAGGTCTTACACTAGCT
24847431 CTCATCTCAA
Statistics
Matches: 108, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
93 4 0.04
94 32 0.30
95 43 0.40
96 14 0.13
97 15 0.14
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (95 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTAGCACATAAAAGTCGATGCCATGTCCCAGATAAGT
CTTACACTAGCTTGTATATCCGAGGCCGAT
Found at i:24847456 original size:94 final size:96
Alignment explanation
Indices: 24847210--24847527 Score: 277
Period size: 94 Copynumber: 3.4 Consensus size: 96
24847200 AAATGCCAAC
* * *
24847210 GCCATGTCCCAGACATGGTCTTACACTAGCTAGCACATC-AAAGTCGATGCCATGTCCCAGATAG
1 GCCATGTCCCAGACAT-GTCTTACACTAGCT--CACATCTCAAGCCGATGCCATGTCCCAGATAA
* *
24847274 GTCTTACAC-AGGCTATGATCTATCGGTGTCGAT
63 GTCTTACACTAGGCTATGATATATCGGTGCCGAT
* * * ** * *
24847307 GCCATGTCCCAGACAGGTCTTACACT-GACACACTTAACAAGCTGTTGCCATGTCCCAGATAAGT
1 GCCATGTCCCAGACATGTCTTACACTAG-CTCACATCTCAAGCCGATGCCATGTCCCAGATAAGT
24847371 CTTACACTA-GCT-TG-TATATCCCGAG-GCCGAT
65 CTTACACTAGGCTATGATATAT--CG-GTGCCGAT
* * *
24847402 G-CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG-CATGTCCCAGACATGT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA-GCCGATGCCATGTCCCAGATAAGT
*
24847465 CTTACACT-GGCTATCATGATAT--G-GCCGAT
65 CTTACACTAGGCTATGAT-ATATCGGTGCCGAT
* * * *
24847494 G-CTTGTACCAGAGATGTCTTACACTAGCACACAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCACAT
24847528 ATCACCACAT
Statistics
Matches: 182, Mismatches: 27, Indels: 29
0.76 0.11 0.12
Matches are distributed among these distances:
92 36 0.20
93 4 0.02
94 61 0.34
95 48 0.26
96 14 0.08
97 19 0.10
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (96 bp):
GCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCCCAGATAAGTC
TTACACTAGGCTATGATATATCGGTGCCGAT
Found at i:24847461 original size:46 final size:47
Alignment explanation
Indices: 24847201--24847521 Score: 200
Period size: 46 Copynumber: 6.8 Consensus size: 47
24847191 CATGGAATAA
* * *
24847201 AATGCCAACGCCATGTCCCAGACATGGTCTTACACTAGCTAGCA-CATC
1 AATGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTATCATC-TC
* * * * *
24847249 AAAGTCGATGCCATGTCCCAGATAGGTCTTACAC-AGGCTATGATCTATC
1 AATGCCGATGCCATGTCCCAGACATGTCTTACACTA-GCTATCATC--TC
** * *
24847298 GGTGTCGATGCCATGTCCCAGACAGGTCTTACACT-GAC-A-CA-CTTAAC
1 AATGCCGATGCCATGTCCCAGACATGTCTTACACTAG-CTATCATC-T--C
* * * * *
24847345 AA-GCTGTTGCCATGTCCCAGATAAGTCTTACACTAGCTTGTAT-ATCCC
1 AATGCCGATGCCATGTCCCAGACATGTCTTACACTAGC---TATCATCTC
* * *
24847393 GAGGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATCTC
1 AATGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTATCATCTC
* *
24847439 AATGCCGATG-CATGTCCCAGACATGTCTTACACTGGCTATCA--TG
1 AATGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTATCATCTC
* * *
24847483 ATATGGCCGATG-CTTGTACCAGAGATGTCTTACACTAGC
1 A-AT-GCCGATGCCATGTCCCAGACATGTCTTACACTAGC
24847522 ACACATATCA
Statistics
Matches: 217, Mismatches: 38, Indels: 38
0.74 0.13 0.13
Matches are distributed among these distances:
44 2 0.01
45 5 0.02
46 102 0.47
47 17 0.08
48 49 0.23
49 39 0.18
50 2 0.01
51 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (47 bp):
AATGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTATCATCTC
Found at i:24849922 original size:68 final size:65
Alignment explanation
Indices: 24849709--24849915 Score: 217
Period size: 64 Copynumber: 3.2 Consensus size: 65
24849699 ATATAGTTCG
* * *
24849709 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCG
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACA-TATATTCTCG
24849770 TA
64 TA
* * * * *
24849772 GCTCTCTTGTCTACATGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATA-TCTCG
1 GCTCTCTTGTCTACATG-GT-GTACACTTAGTACCACCCATGCGACCTAGCTACATATATTCTCG
24849836 TA
64 TA
* * *
24849838 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTT
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTC
24849903 GTA
63 GTA
24849906 GCTCTCTTGT
1 GCTCTCTTGT
24849916 ACACATGATG
Statistics
Matches: 119, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 15 0.13
64 30 0.25
65 27 0.23
66 28 0.24
67 2 0.02
68 16 0.13
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
Found at i:24850656 original size:30 final size:30
Alignment explanation
Indices: 24850622--24850682 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
24850612 TCCTTAACTC
24850622 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
24850652 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
24850682 A
1 A
24850683 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:24857984 original size:27 final size:27
Alignment explanation
Indices: 24857953--24858130 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
24857943 TAAATTGTAC
*
24857953 AGCACTAAGTGCGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24857980 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24858006 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24858034 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24858062 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24858089 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24858116 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24858131 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24858067 original size:82 final size:81
Alignment explanation
Indices: 24857954--24858109 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
24857944 AAATTGTACA
* *
24857954 GCACTAAGTGCGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGCGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24858018 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
24858035 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGCGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24858100 TGCGAGTTGA
65 TGCGAATTGA
24858110 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGCGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24858121 original size:82 final size:81
Alignment explanation
Indices: 24857950--24858130 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
24857940 GATTAAATTG
* * *
24857950 TACAGCACTAAGTGCGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24858015 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24858031 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24858095 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24858113 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24858131 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24875082 original size:21 final size:23
Alignment explanation
Indices: 24875032--24875084 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 23
24875022 TGATCAAATA
24875032 TCAA-CATC-TAGCATTCATTTG
1 TCAAGCATCATAGCATTCATTTG
*
24875053 TCAATCATCATAGCA-TCA-TTG
1 TCAAGCATCATAGCATTCATTTG
*
24875074 TCACGCATCAT
1 TCAAGCATCAT
24875085 TATAAAGTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 16 0.57
22 7 0.25
23 5 0.18
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.34
Consensus pattern (23 bp):
TCAAGCATCATAGCATTCATTTG
Found at i:24878674 original size:22 final size:22
Alignment explanation
Indices: 24878647--24878691 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
24878637 GGGATATGTT
24878647 AAACTAAAAGAATTGAGAGAGA
1 AAACTAAAAGAATTGAGAGAGA
24878669 AAACTAAAAGAATTGAGAGAGA
1 AAACTAAAAGAATTGAGAGAGA
24878691 A
1 A
24878692 TGAGAATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.04, G:0.22, T:0.13
Consensus pattern (22 bp):
AAACTAAAAGAATTGAGAGAGA
Found at i:24878736 original size:39 final size:39
Alignment explanation
Indices: 24878688--24878769 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
24878678 GAATTGAGAG
*
24878688 AGAATGAGAATAAGACATTCAGCTAAAGAGAAAAAGAAA
1 AGAAGGAGAATAAGACATTCAGCTAAAGAGAAAAAGAAA
* *
24878727 AGAAGGAGAATAGGACATTCGGCTAAAGAGAAAAAGAAA
1 AGAAGGAGAATAAGACATTCAGCTAAAGAGAAAAAGAAA
24878766 AGAA
1 AGAA
24878770 TGTCAGTCAG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.57, C:0.07, G:0.24, T:0.11
Consensus pattern (39 bp):
AGAAGGAGAATAAGACATTCAGCTAAAGAGAAAAAGAAA
Found at i:24884048 original size:137 final size:137
Alignment explanation
Indices: 24883843--24884119 Score: 545
Period size: 137 Copynumber: 2.0 Consensus size: 137
24883833 AAAAATCTGA
24883843 AAGAAAAACTTTAAGGGCATTTTGGTCATTTGGTTAATAAAAGAATAAAAAGGGAAAAATCAAGA
1 AAGAAAAACTTTAAGGGCATTTTGGTCATTTGGTTAATAAAAGAATAAAAAGGGAAAAATCAAGA
*
24883908 AAAAATGATGTCCATCTTCTCTTTGGGTGCCAAAATTTGGGGAGTCTCTAGAGCTAGGGTTTTTA
66 AAAAATGATGTCCATCTTCTCTTTGGGTGCCAAAATTTAGGGAGTCTCTAGAGCTAGGGTTTTTA
24883973 ACTTTTC
131 ACTTTTC
24883980 AAGAAAAACTTTAAGGGCATTTTGGTCATTTGGTTAATAAAAGAATAAAAAGGGAAAAATCAAGA
1 AAGAAAAACTTTAAGGGCATTTTGGTCATTTGGTTAATAAAAGAATAAAAAGGGAAAAATCAAGA
24884045 AAAAATGATGTCCATCTTCTCTTTGGGTGCCAAAATTTAGGGAGTCTCTAGAGCTAGGGTTTTTA
66 AAAAATGATGTCCATCTTCTCTTTGGGTGCCAAAATTTAGGGAGTCTCTAGAGCTAGGGTTTTTA
24884110 ACTTTTC
131 ACTTTTC
24884117 AAG
1 AAG
24884120 CTTTATTGTA
Statistics
Matches: 139, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 139 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (137 bp):
AAGAAAAACTTTAAGGGCATTTTGGTCATTTGGTTAATAAAAGAATAAAAAGGGAAAAATCAAGA
AAAAATGATGTCCATCTTCTCTTTGGGTGCCAAAATTTAGGGAGTCTCTAGAGCTAGGGTTTTTA
ACTTTTC
Found at i:24893637 original size:48 final size:48
Alignment explanation
Indices: 24893572--24893960 Score: 733
Period size: 48 Copynumber: 8.1 Consensus size: 48
24893562 GCTGAAATTG
*
24893572 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
24893620 ATGTATGAGATATGTATATATGGTAAAGTCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
24893668 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
24893716 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
24893764 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
24893812 ATGTATGAGATATTTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
24893860 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
24893908 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
24893956 ATGTA
1 ATGTA
24893961 GGCGATGTGA
Statistics
Matches: 333, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 333 1.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:24894215 original size:37 final size:37
Alignment explanation
Indices: 24894107--24894215 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
24894097 GGAAATATAT
*
24894107 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
24894144 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
24894181 TTCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
24894216 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:24908297 original size:39 final size:40
Alignment explanation
Indices: 24908181--24908356 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
24908171 ACCCAAGTAT
24908181 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
24908220 CTTCAGGTCTTAGCCCGGATATAGCAACTCGTACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
24908260 CTTCGGGTCTTAGCCC-GATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * * *
24908299 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
24908339 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
24908357 TTATCATCCG
Statistics
Matches: 114, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
38 1 0.01
39 42 0.37
40 71 0.62
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:24908313 original size:79 final size:79
Alignment explanation
Indices: 24908181--24908351 Score: 229
Period size: 79 Copynumber: 2.2 Consensus size: 79
24908171 ACCCAAGTAT
* * * *
24908181 CTTCGGGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCAGGTCTTAGCCCGGATATAGC
1 CTTCGGG-TCTTAGCCCGATATAACAACTAGCACAAATGCCTTCAGGACATAGCCCGGATATAGC
*
24908245 AACTCGTACAAATGC
65 AACTCGCACAAATGC
* *
24908260 CTTCGGGTCTTAGCCCGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGATATAA-CAACTAGCACAAATGCCTTCAGGACATAGCCCGGATATAGC
*
24908324 AACTCGCACGAATGC
65 AACTCGCACAAATGC
*
24908339 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
24908352 TCCGGTTATC
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 79 0.98
80 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CTTCGGGTCTTAGCCCGATATAACAACTAGCACAAATGCCTTCAGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:24922163 original size:47 final size:47
Alignment explanation
Indices: 24922058--24922302 Score: 313
Period size: 47 Copynumber: 5.2 Consensus size: 47
24922048 AATTCTAAAT
24922058 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
24922107 TGTGATAAGGCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATA
1 TGTGATAAGGCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
*
24922154 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG-TATATG
1 TGTGATAAGGC-TAATGGCCGATGTGATGAATGTGAAAGTGATATATA
*
24922201 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTG-AAGTG-TATATA
1 TGTGATAAGGC-TAATGGCCGATGTGATGAATGTGAAAGTGATATATA
* * * * * *
24922247 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-A
1 TGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
24922294 TGTGATAAG
1 TGTGATAAG
24922303 TCCCGAAGGG
Statistics
Matches: 178, Mismatches: 12, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
46 36 0.20
47 77 0.43
48 48 0.27
49 17 0.10
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
Found at i:24922299 original size:93 final size:93
Alignment explanation
Indices: 24922058--24922302 Score: 330
Period size: 93 Copynumber: 2.6 Consensus size: 93
24922048 AATTCTAAAT
* *
24922058 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTAATG
1 TGTGACAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA-A-ATGTGATAAGGCTAATG
24922123 GCCGATGTGATGAATGTGAAGTGTATATATA
64 GCCGATGTGATGAATGTGAAGTG-ATATATA
* ** ***
24922154 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGACAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGC-TAATGG
24922219 CCGATGTGATGAATGTGAAGTG-TATATA
65 CCGATGTGATGAATGTGAAGTGATATATA
* * * * *
24922247 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGACAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
24922303 TCCCGAAGGG
Statistics
Matches: 133, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
93 51 0.38
94 10 0.08
95 28 0.21
96 44 0.33
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (93 bp):
TGTGACAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCTAATGGC
CGATGTGATGAATGTGAAGTGATATATA
Found at i:24922474 original size:37 final size:37
Alignment explanation
Indices: 24922418--24922496 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24922408 TCGAGCTCTA
* * *
24922418 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
24922455 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
24922492 AAGAC
1 AAGAC
24922497 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:24926256 original size:24 final size:24
Alignment explanation
Indices: 24926229--24926296 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 24
24926219 CGATCACGCA
24926229 AAAAGAGACGAGTCCAAGAAACCT
1 AAAAGAGACGAGTCCAAGAAACCT
* * *
24926253 AAAATAG--GTG-ACAAGGAAACCT
1 AAAAGAGACGAGTCCAA-GAAACCT
24926275 AAAAGAGACGAGTCCAAGAAAC
1 AAAAGAGACGAGTCCAAGAAAC
24926297 TCAGTAAGTC
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
21 3 0.09
22 15 0.44
24 13 0.38
25 3 0.09
ACGTcount: A:0.51, C:0.18, G:0.22, T:0.09
Consensus pattern (24 bp):
AAAAGAGACGAGTCCAAGAAACCT
Found at i:24926799 original size:28 final size:28
Alignment explanation
Indices: 24926736--24926886 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
24926726 ATATTAAGTC
*
24926736 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
24926763 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
24926791 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
24926819 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
24926847 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
24926876 CGCACACTTAG
1 CGCACACTTAG
24926887 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:24930083 original size:39 final size:40
Alignment explanation
Indices: 24930018--24930284 Score: 364
Period size: 40 Copynumber: 6.7 Consensus size: 40
24930008 TATTCGGATG
* * *
24930018 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
24930058 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
24930097 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
24930136 ATATCCGAGG-TAAGTACCGAAGGCATTTGTGCGAGTTACT
1 ATAACCG-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
24930176 ATAACTGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
24930216 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
24930256 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
24930285 AGCAAGTAGC
Statistics
Matches: 209, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
39 73 0.35
40 136 0.65
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:24930167 original size:40 final size:40
Alignment explanation
Indices: 24930022--24930317 Score: 363
Period size: 40 Copynumber: 7.5 Consensus size: 40
24930012 CGGATGATAA
* * *
24930022 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
24930062 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
24930101 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
24930140 CCGAGG-TAAGTACCGAAGGCATTTGTGCGAGTTACTATAA
1 CCG-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
24930180 CTGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
24930220 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
24930260 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
24930300 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
24930318 TACTTGGTTT
Statistics
Matches: 234, Mismatches: 17, Indels: 11
0.89 0.06 0.04
Matches are distributed among these distances:
39 88 0.38
40 146 0.62
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:24935347 original size:47 final size:48
Alignment explanation
Indices: 24935278--24935371 Score: 136
Period size: 47 Copynumber: 2.0 Consensus size: 48
24935268 GTTGCTACAG
* * * *
24935278 TGTGCCTGTGTAAGACCATGTCTAGGA-ATGGCGTCGGGGATGATATT
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGCCATCGGCGATGATATT
*
24935325 TGTGCCAGTGTAAGACCATGTCTGGGACATGCCATCGGCGATGATAT
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGCCATCGGCGATGATAT
24935372 GTGGATTCAT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 25 0.61
48 16 0.39
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTAGGACATGCCATCGGCGATGATATT
Done.