Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 82 of 333
Found at i:25254473 original size:20 final size:20
Alignment explanation
Indices: 25254450--25254512 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
25254440 GAACATCTCG
25254450 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
25254470 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
25254490 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
25254510 TGT
1 TGT
25254513 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:25254577 original size:25 final size:25
Alignment explanation
Indices: 25254549--25254596 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
25254539 ATATATAAAC
* * *
25254549 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
25254574 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
25254597 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:25270832 original size:92 final size:92
Alignment explanation
Indices: 25270721--25270890 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
25270711 GCCCCTAAGT
* *
25270721 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
25270786 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
25270813 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
25270878 CGAGTTCGGATGC
66 CGAGTTCGGATGC
25270891 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:25270887 original size:46 final size:46
Alignment explanation
Indices: 25270716--25270887 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
25270706 AACCCGCCCC
* * *
25270716 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
25270762 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
25270808 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
25270854 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
25270888 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:25270906 original size:46 final size:46
Alignment explanation
Indices: 25270718--25270906 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
25270708 CCCGCCCCTA
* ** * *
25270718 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
25270763 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
25270811 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
25270856 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
25270902 AGTGA
1 AGTGA
25270907 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:25271360 original size:30 final size:30
Alignment explanation
Indices: 25271326--25271385 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
25271316 ATTTAATACG
25271326 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
25271356 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
25271386 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:25273733 original size:17 final size:17
Alignment explanation
Indices: 25273694--25273733 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
25273684 AAAACCCCTG
* *
25273694 CAAAAATTAGATTTTCG
1 CAAAATTTAGATTTTCA
25273711 CAAAATTTAGATTTTCA
1 CAAAATTTAGATTTTCA
25273728 CAAAAT
1 CAAAAT
25273734 ACCTACATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (17 bp):
CAAAATTTAGATTTTCA
Found at i:25291723 original size:27 final size:27
Alignment explanation
Indices: 25291692--25291869 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
25291682 TAAATTGTAC
25291692 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25291719 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25291745 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25291773 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
25291801 AGCACTAAATGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25291828 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25291855 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25291870 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25291806 original size:82 final size:81
Alignment explanation
Indices: 25291693--25291848 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
25291683 AAATTGTACA
* * *
25291693 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAATGTGCGAAATGAATACGTA-GCACTAAGTG
25291757 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25291774 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAATGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAATGTGCGAAATGAATACGTAGCACTAAGTG
*
25291839 TGCGAGTTGA
65 TGCGAATTGA
25291849 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAATGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25291860 original size:82 final size:81
Alignment explanation
Indices: 25291689--25291869 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
25291679 GATTAAATTG
* * *
25291689 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAATGTGCGAAATGAATACGATGCACTAA
25291754 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25291770 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAATGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAATGTGCGAAATGAATACGAT-GCACT
* **
25291834 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25291852 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25291870 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAATGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25291880 original size:27 final size:27
Alignment explanation
Indices: 25291827--25291880 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
25291817 TTTGATTACG
* * *
25291827 TAGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGAGCTCAATATA
* *
25291854 TAGCACTGAGTGTGCGGGCTCAATATA
1 TAGCACTAAGTGTGCGAGCTCAATATA
25291881 CATTCGTGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGAGCTCAATATA
Found at i:25294776 original size:46 final size:46
Alignment explanation
Indices: 25294723--25294859 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
25294713 TATATATACA
* * * *
25294723 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
25294769 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
25294815 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
25294860 ATACACTTCC
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:25294904 original size:47 final size:47
Alignment explanation
Indices: 25294833--25295211 Score: 553
Period size: 47 Copynumber: 8.1 Consensus size: 47
25294823 ACACATTTCG
* * * * * *
25294833 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
25294880 CATTGGCCATTCTGCCTTATCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
25294927 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
25294974 CATTGGCCATTCGACCTTATCATACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
25295021 CATTGGCCATTCGGCCTTATCACATATATGCATGGTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
25295068 CATTGGCCATTCGGCCTTATCATACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
25295115 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
25295162 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
25295209 CAT
1 CAT
25295212 AAAATCCTAA
Statistics
Matches: 304, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 303 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:25295042 original size:22 final size:22
Alignment explanation
Indices: 25295017--25295139 Score: 69
Period size: 22 Copynumber: 5.3 Consensus size: 22
25295007 GTTCACATTC
25295017 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*
25295039 ATCACATATATG-CA-T-GGTCACATT
1 ATCACAT-T-GGCCATTCGG-C-C-TT
25295063 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
25295086 ATCATACATAT-G-CATGTTC-ACATT
1 ATC--ACAT-TGGCCA--TTCGGCCTT
25295110 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
25295133 ATCACAT
1 ATCACAT
25295140 ATATGCATGT
Statistics
Matches: 77, Mismatches: 6, Indels: 36
0.65 0.05 0.30
Matches are distributed among these distances:
21 2 0.03
22 23 0.30
23 17 0.22
24 17 0.22
25 16 0.21
26 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:25295212 original size:25 final size:25
Alignment explanation
Indices: 25295133--25295212 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
25295123 ATTCGGCCTT
**
25295133 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* *
25295158 ATCACAT-T-TGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
* *
25295180 ATCTCATATATACACATTCACATTC
1 ATCACATATATGCACATTCACATTC
25295205 ATCACATA
1 ATCACATA
25295213 AAATCCTAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 6 0.15
25 19 0.46
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:25301551 original size:18 final size:17
Alignment explanation
Indices: 25301511--25301557 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
25301501 AATATTTATA
25301511 CTTTA-TTTTTTTATTT
1 CTTTATTTTTTTTATTT
*
25301527 TTCTTATTTTTTTTATTT
1 CT-TTATTTTTTTTATTT
25301545 CCTTTATTATTTT
1 -CTTTATT-TTTT
25301558 CTAAAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 1 0.04
17 3 0.12
18 16 0.64
19 5 0.20
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.79
Consensus pattern (17 bp):
CTTTATTTTTTTTATTT
Found at i:25306277 original size:11 final size:11
Alignment explanation
Indices: 25306261--25306297 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
25306251 GCTCGTTTTG
25306261 TTATCAACTCA
1 TTATCAACTCA
25306272 TTATCAACTCA
1 TTATCAACTCA
25306283 TTATCAACTCA
1 TTATCAACTCA
25306294 TTAT
1 TTAT
25306298 TTAATAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (11 bp):
TTATCAACTCA
Found at i:25307968 original size:47 final size:47
Alignment explanation
Indices: 25307913--25308186 Score: 440
Period size: 47 Copynumber: 5.8 Consensus size: 47
25307903 ATTTAGGATT
25307913 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* *
25307960 CGATGTGATGAATTTGAAAGTTTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
25308007 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
25308056 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
25308103 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
25308150 CAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
25308187 TCCCGAAGGG
Statistics
Matches: 211, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 164 0.78
49 47 0.22
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
Found at i:25308059 original size:96 final size:94
Alignment explanation
Indices: 25307913--25308186 Score: 440
Period size: 96 Copynumber: 2.9 Consensus size: 94
25307903 ATTTAGGATT
*
25307913 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
25307978 AGTTTATATATGTGATAAGGCCTAATGGC
66 AGTGTATATATGTGATAAGGCCTAATGGC
25308007 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
25308072 AAAGTGTATATATGTGATAAGGCCTAATGGC
64 AAAGTGTATATATGTGATAAGGCCTAATGGC
* * * * * * *
25308103 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
25308168 AGTGTATAAATGTGATAAG
66 AGTGTATATATGTGATAAG
25308187 TCCCGAAGGG
Statistics
Matches: 168, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
94 76 0.45
96 92 0.55
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGC
Found at i:25308060 original size:143 final size:141
Alignment explanation
Indices: 25307913--25308186 Score: 449
Period size: 143 Copynumber: 1.9 Consensus size: 141
25307903 ATTTAGGATT
*
25307913 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * *
25307978 AGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
66 AGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA-A-ATGTGAT
25308043 AAGGCCTAATGGC
129 AAGGCCTAATGGC
25308056 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
25308121 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
66 AGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAA
25308186 G
131 G
25308187 TCCCGAAGGG
Statistics
Matches: 122, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
141 10 0.08
142 1 0.01
143 111 0.91
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (141 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAA
GGCCTAATGGC
Found at i:25308361 original size:37 final size:37
Alignment explanation
Indices: 25308305--25308383 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
25308295 CCGAGCTCTA
* * * *
25308305 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTAGAGATTATGTCCGGGT
*
25308342 AAGACCCGATAACTTCGTGTAGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTAGAGATTATGTCCGGGT
25308379 AAGAC
1 AAGAC
25308384 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTAGAGATTATGTCCGGGT
Found at i:25314548 original size:38 final size:38
Alignment explanation
Indices: 25314497--25314810 Score: 448
Period size: 38 Copynumber: 8.3 Consensus size: 38
25314487 ATATTTGATG
* * *
25314497 TATATTCGGGTTAAATCCCGCAGACTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
*
25314535 TATATCAGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
**
25314573 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* *
25314611 TATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAA
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
*
25314649 TATGTCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* *
25314687 TATATCCGGGTTAAATCCTACAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* * * *
25314725 TATATTCGGGTTAAATCTCGCAGGCTTCATGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* * * *
25314763 TATATCCGAGTTAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
*
25314801 TATATTCGGG
1 TATATCCGGG
25314811 CCTTTGAGCC
Statistics
Matches: 245, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 245 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
Found at i:25314697 original size:114 final size:114
Alignment explanation
Indices: 25314497--25314810 Score: 493
Period size: 114 Copynumber: 2.8 Consensus size: 114
25314487 ATATTTGATG
* * *
25314497 TATATTCGGGTTAAATCCCGCAGACTTCGTGCTGGTATTATATCAGGGTTAAATCCCACAGGCTT
1 TATATTCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCACAGGCTT
* *
25314562 CGTGCTGGTATTATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
66 CGTGCTGGTATTATATCCGGGTTAAATCCTACAGGCTTCGTGCTGGTAA
* * * *
25314611 TATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAATATGTCCGGGTTAAATCCCACAGGCTT
1 TATATTCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCACAGGCTT
25314676 CGTGCTGGTATTATATCCGGGTTAAATCCTACAGGCTTCGTGCTGGTAA
66 CGTGCTGGTATTATATCCGGGTTAAATCCTACAGGCTTCGTGCTGGTAA
* * * *
25314725 TATATTCGGGTTAAATCTCGCAGGCTTCATGCTGGTATTATATCCGAGTTAAATCCCGCAGGCCT
1 TATATTCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCACAGGCTT
* *
25314790 AGTGCTGGTATTATATTCGGG
66 CGTGCTGGTATTATATCCGGG
25314811 CCTTTGAGCC
Statistics
Matches: 181, Mismatches: 19, Indels: 0
0.90 0.09 0.00
Matches are distributed among these distances:
114 181 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (114 bp):
TATATTCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCACAGGCTT
CGTGCTGGTATTATATCCGGGTTAAATCCTACAGGCTTCGTGCTGGTAA
Found at i:25320437 original size:38 final size:38
Alignment explanation
Indices: 25320386--25320698 Score: 448
Period size: 38 Copynumber: 8.3 Consensus size: 38
25320376 ATATTTGATG
*
25320386 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
25320424 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* * * *
25320462 TATATCTGGGTGAAATCTCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* * *
25320500 TATAACCGGGGTAAATCCCACAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
*
25320538 TATCTCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
** * *
25320576 TATATCCGGGTTAAATCCTGCAGGCTTC-AGCTGGTAA
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* *
25320613 TATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* * *
25320651 TAGATCCGGGTTAAATCCCACAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
*
25320689 TATATTCGGG
1 TATATCCGGG
25320699 CCTTTGAGCC
Statistics
Matches: 242, Mismatches: 32, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
37 33 0.14
38 209 0.86
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
Found at i:25324605 original size:46 final size:46
Alignment explanation
Indices: 25324472--25324691 Score: 207
Period size: 46 Copynumber: 4.7 Consensus size: 46
25324462 TGAGATGCCA
* * * *
25324472 ATGCCATGTCCCAGACATGATCTTACACAAGCTCTAGCATATCTGTGCCG
1 ATGCCATGTCCCAGACATG-TCTTACACTAGCACT--CATCTCT-AGCCG
* *
25324522 ATGCCTTGTCCCAGACATGGTCTTACACT-G-ACACATCTCCTAGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTAGCACTCATCT-CTAGCCG
*
25324568 ATG-CATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATGCCG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA-GCCG
* * * *
25324614 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CAATGTGGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTAGCACTCATC--TCTAGCCG
*
25324662 ATG-CATGTCCTAGACATGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGTCTTACACTAGC
25324692 TCACAATAGC
Statistics
Matches: 145, Mismatches: 16, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 37 0.26
47 30 0.21
48 24 0.17
49 2 0.01
50 25 0.17
51 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTAGCCG
Found at i:25324684 original size:94 final size:93
Alignment explanation
Indices: 25324476--25324691 Score: 265
Period size: 94 Copynumber: 2.3 Consensus size: 93
25324466 ATGCCAATGC
* * ** *
25324476 CATGTCCCAGACATGATCTTACACAAGCTCTAGCATATCTGTGCCGATGCCTTGTCCCAGACATG
1 CATGTCCCAGACATG-TCTTACACTAGCACTA-CATATCAATGCCGATGCCATGTCCCAGACATG
*
25324541 GTCTTACACTGACACATCTCCTAGCCGATG
64 GTCTTACACTGACACATCACCTAGCCGATG
*
25324571 CATGTCCCAGACATGTCTTACACTAGCACT-CATCTCAATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTAGCACTACATATCAATGCCGATGCCATGTCCCAGACATGGT
* * * *
25324635 CTTACACTGGCTC-TCACAATGTGGCCGATG
66 CTTACACTGACACATCAC---CTAGCCGATG
*
25324665 CATGTCCTAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
25324692 TCACAATAGC
Statistics
Matches: 106, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
91 3 0.03
92 41 0.39
94 47 0.44
95 15 0.14
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCACTACATATCAATGCCGATGCCATGTCCCAGACATGGT
CTTACACTGACACATCACCTAGCCGATG
Found at i:25325067 original size:30 final size:31
Alignment explanation
Indices: 25325028--25325086 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
25325018 ATAACCTATA
25325028 TTTTGGCAAAATGACCATTTTACCCCTAGAC
1 TTTTGGCAAAATGACCATTTTACCCCTAGAC
*
25325059 TTTT-GCAAAATGACCATTTTATCCCTAG
1 TTTTGGCAAAATGACCATTTTACCCCTAG
25325087 TTTTGAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.36
Consensus pattern (31 bp):
TTTTGGCAAAATGACCATTTTACCCCTAGAC
Found at i:25326353 original size:12 final size:12
Alignment explanation
Indices: 25326336--25326362 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25326326 AGTTTCCATG
25326336 ATTCAACTAGCC
1 ATTCAACTAGCC
25326348 ATTCAACTAGCC
1 ATTCAACTAGCC
25326360 ATT
1 ATT
25326363 TCATAGTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (12 bp):
ATTCAACTAGCC
Found at i:25334303 original size:40 final size:40
Alignment explanation
Indices: 25334225--25334408 Score: 219
Period size: 40 Copynumber: 4.5 Consensus size: 40
25334215 ACCCAAGTAT
* *
25334225 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* **
25334264 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
25334304 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATGC
* ** *
25334347 CTTCGGGACTTAGCCCGGATATAGTAACTTCCACAAATGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
*
25334387 CTGCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
25334409 CATCCGAATA
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 12 0.10
40 76 0.61
41 1 0.01
43 35 0.28
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:25334360 original size:83 final size:80
Alignment explanation
Indices: 25334225--25334408 Score: 244
Period size: 83 Copynumber: 2.3 Consensus size: 80
25334215 ACCCAAGTAT
* *
25334225 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* * **
25334289 CACTAGCATGAATGC
66 AACTACCACAAATGC
*
25334304 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
* *
25334369 AGTAACTTCCACAAATGT
63 AGTAACTACCACAAATGC
*
25334387 CTGCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
25334409 CATCCGAATA
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 12 0.13
80 10 0.11
81 1 0.01
83 67 0.74
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTACCACAAATGC
Found at i:25337648 original size:47 final size:47
Alignment explanation
Indices: 25337576--25337801 Score: 219
Period size: 47 Copynumber: 4.8 Consensus size: 47
25337566 GGTAAGGTGC
*
25337576 CGATGCCATGTCCTAGACATAGTCTTACACTGGCTCACATCTCAAGT
1 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCACATCTCAAGT
* * * * *
25337623 TGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGC
1 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCA-CATCTC-AAGT
* * * *
25337671 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAATGT
1 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCACATCTCAA-GT
* * *** *
25337717 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCCCATAATGTGGC
1 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCACAT-CTCAAGT
* *
25337765 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCACA
1 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCACA
25337802 CACAAATGAC
Statistics
Matches: 146, Mismatches: 26, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 39 0.27
47 78 0.53
48 27 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCACATCTCAAGT
Found at i:25337743 original size:94 final size:93
Alignment explanation
Indices: 25337574--25337801 Score: 296
Period size: 94 Copynumber: 2.4 Consensus size: 93
25337564 TGGGTAAGGT
* * *
25337574 GCCGATGCCATGTCCTAGACATAGTCTTACACTGGCTCACATCTCAAGTTGATGCCATGTCCCAG
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCACACATCTCAAGTCGATGCCATGTCCCAG
* * *
25337639 ACATGGTCTTACACTGACTATCAT-CTCGTA
64 ACATAGTCTTACACTGACTACCATAAT-GTA
* * *
25337669 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGTCGATGCCATGTCCCAGA
1 GCCGATGCATGTCCTAGACATGTCTTACACTAGCACACATCTCAA-GTCGATGCCATGTCCCAGA
* * *
25337734 CATAGTCTTACACTGGCTCCCATAATGTG
65 CATAGTCTTACACTGACTACCATAATGTA
*
25337763 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTCACA
1 GCCGATGCATGTCCTAGACATGTCTTACACTAGCACACA
25337802 CACAAATGAC
Statistics
Matches: 115, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
93 20 0.17
94 87 0.76
95 8 0.07
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (93 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTAGCACACATCTCAAGTCGATGCCATGTCCCAGAC
ATAGTCTTACACTGACTACCATAATGTA
Found at i:25339781 original size:40 final size:40
Alignment explanation
Indices: 25339680--25339903 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
25339670 TATTCGAATG
* * * *
25339680 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCCGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
25339721 ACA-ACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCCGG-CTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
25339761 ATATCCCGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCCGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
25339801 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCCGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * * *
25339841 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACA
1 ATATCCCGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
25339881 ACATCCGGGCTAAGACCTGAAGG
1 ATATCCCGGCTAAGACCCGAAGG
25339904 ACTTGCGCAA
Statistics
Matches: 150, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.81
41 27 0.18
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCCGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:25339852 original size:80 final size:80
Alignment explanation
Indices: 25339680--25339903 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
25339670 TATTCGAATG
* * * * *
25339680 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACTACAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTACATCCGGGCTAAGACCCGAAGGC
25339745 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTTGCT
* * * * * *
25339761 ATATCCCGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
* *
25339826 TTTGTGCTAG-TGACT
66 TTCGTGCGAGTTG-CT
* * * *
25339841 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACAACATCCGGGCTAAGACCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGG
25339904 ACTTGCGCAA
Statistics
Matches: 119, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 2 0.02
80 87 0.73
81 30 0.25
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGCT
Found at i:25339897 original size:120 final size:121
Alignment explanation
Indices: 25339680--25339903 Score: 274
Period size: 120 Copynumber: 1.9 Consensus size: 121
25339670 TATTCGAATG
** * * *
25339680 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACTACAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGTGACTACAACCGGACTAAGATCCAAAGGC
* * *
25339745 ATTCGTGCGAGTTGCTATATCCCGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCAACATCCCGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
25339801 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAG-TCCCAAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGTGACTACAACCGGACTAAGAT-CCAAAGG
* * * *
25339864 CATTTATGCTAG-TGACAACATCCGGGCTAAGACCTGAAGG
65 CATTCATGCGAGTTG-CAACATCCCGGCTAAGACCCGAAGG
25339904 ACTTGCGCAA
Statistics
Matches: 86, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
119 3 0.03
120 53 0.62
121 30 0.35
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGTGACTACAACCGGACTAAGATCCAAAGGC
ATTCATGCGAGTTGCAACATCCCGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:25345409 original size:37 final size:37
Alignment explanation
Indices: 25345333--25345409 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
25345323 TTATTACGAA
* * * *
25345333 GTCTTACCCGGACATAATCTCCACACGAAGTTATGGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
25345370 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
25345407 GTC
1 GTC
25345410 GTTAGAGCTC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:25345608 original size:47 final size:47
Alignment explanation
Indices: 25345530--25346056 Score: 829
Period size: 47 Copynumber: 11.1 Consensus size: 47
25345520 CCCTTCGGGA
* * * * * *
25345530 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
25345577 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25345624 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25345671 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25345720 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25345767 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25345814 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
25345863 CTTATCACATATTTATACTTTCACGTTCATGACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25345910 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25345957 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
25346006 CTTATCACATATATACACTTTCATGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25346053 CTTA
1 CTTA
25346057 CTATCATTTC
Statistics
Matches: 444, Mismatches: 30, Indels: 12
0.91 0.06 0.02
Matches are distributed among these distances:
47 307 0.69
49 137 0.31
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25345731 original size:96 final size:96
Alignment explanation
Indices: 25345530--25346056 Score: 841
Period size: 96 Copynumber: 5.5 Consensus size: 96
25345520 CCCTTCGGGA
* * * * * * * *
25345530 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
25345593 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
25345624 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
25345689 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
25345720 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--GTATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
25345783 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
25345814 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-T-T
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* * *
25345877 ATACTTTCACGTTCATGACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
25345910 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
25345975 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
**
25346006 CTTATCACATATATACACTTTCATGTTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
25346057 CTATCATTTC
Statistics
Matches: 403, Mismatches: 22, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
94 151 0.37
95 1 0.00
96 249 0.62
97 1 0.00
98 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25345799 original size:143 final size:143
Alignment explanation
Indices: 25345530--25346056 Score: 887
Period size: 143 Copynumber: 3.7 Consensus size: 143
25345520 CCCTTCGGGA
* * * * * * * *
25345530 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
25345593 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACA
25345658 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
25345671 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
25345736 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACA
25345801 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
25345814 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATTTAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
25345879 ACTTTCACGTTCATGACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACA
25345944 TCGGCCATTAGGC
131 TCGGCCATTAGGC
25345957 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
**
25346022 ACTTTCATGTTCATCACATCGGCCATTAGGCCTTA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
25346057 CTATCATTTC
Statistics
Matches: 363, Mismatches: 21, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 9 0.02
142 1 0.00
143 353 0.97
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:25352294 original size:40 final size:40
Alignment explanation
Indices: 25352199--25352423 Score: 222
Period size: 40 Copynumber: 5.6 Consensus size: 40
25352189 TATTCGAATG
* *
25352199 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GCGACT
* * * * * * *
25352240 ACAACCGGACTAAGATCTGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-CGACT
* *
25352280 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* *
25352320 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * *
25352360 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
* * *
25352400 ACATTCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
25352424 CTTGTGCAAG
Statistics
Matches: 153, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
39 1 0.01
40 124 0.81
41 27 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:25352379 original size:80 final size:80
Alignment explanation
Indices: 25352199--25352459 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
25352189 TATTCGAATG
* * * * *
25352199 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTACAACCGGACTAAGATCTGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTACATCCGGGCTAAGACCCGAAGGC
*
25352264 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * *
25352280 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
* *
25352345 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
25352360 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATTCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
* * *
25352425 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
25352439 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
25352460 ATTAGTTGAG
Statistics
Matches: 152, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 92 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:25352417 original size:120 final size:120
Alignment explanation
Indices: 25352199--25352459 Score: 298
Period size: 120 Copynumber: 2.2 Consensus size: 120
25352189 TATTCGAATG
* * * *
25352199 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTACAACCGGACTAAGATCTGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTACAACCGGACTAAGATCCGAAGGC
* * * * *
25352264 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * * *
25352320 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTACAACCGGACTAAGAT-CCGAAGG
* * * *
25352383 CATTTATGCTAG-TGACCACATTCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
25352439 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
25352460 ATTAGTTGAG
Statistics
Matches: 119, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 15 0.13
119 19 0.16
120 54 0.45
121 31 0.26
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTACAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:25355588 original size:53 final size:54
Alignment explanation
Indices: 25355520--25355677 Score: 167
Period size: 53 Copynumber: 2.9 Consensus size: 54
25355510 TTCCTTTTTA
*
25355520 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGATATCCTTGCCTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGA-ATCCTTGCCTTATCGT
* * * * *
25355573 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACAT-GAATCCTTGCCTTATCGT
** ** * *
25355628 AGTTTATGAATGCCATGTCTTGACATGGTTTTACATGAATTCCTTGCCTT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGAA-TCCTTGCCTT
25355678 GTAAAACTTA
Statistics
Matches: 84, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
53 44 0.52
54 4 0.05
55 36 0.43
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGAATCCTTGCCTTATCGT
Found at i:25355675 original size:55 final size:52
Alignment explanation
Indices: 25355520--25355696 Score: 140
Period size: 53 Copynumber: 3.3 Consensus size: 52
25355510 TTCCTTTTTA
* * *
25355520 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGATATCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGAT-TCCTTGCCTTATG
* * * *
25355573 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGA-TCTTTGCCTTATCG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACAT--GATTCCTTGCCTTAT-G
** * ** * * *
25355627 TAGTTTATGAATGCCATGTCTTGACATGGTTTTACATGAATTCCTTGCCTTGTAA
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATG-ATTCCTTGCCTTAT-G
*
25355682 AACTTACCAATGCCA
1 AACTCACCAATGCCA
25355697 CACCTTGGCA
Statistics
Matches: 96, Mismatches: 22, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
53 44 0.46
54 13 0.14
55 39 0.41
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.36
Consensus pattern (52 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGATTCCTTGCCTTATG
Found at i:25361050 original size:30 final size:29
Alignment explanation
Indices: 25361014--25361071 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
25361004 AAAAGGAAGT
25361014 TTGGCACTAAGTGTGCGATTTAAACTAGCC
1 TTGGCACTAAGTGTGCGATTT-AACTAGCC
25361044 TTGGCACTAAGTGTGCGATTTAACTAGC
1 TTGGCACTAAGTGTGCGATTTAACTAGC
25361072 TTCGACTACT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (29 bp):
TTGGCACTAAGTGTGCGATTTAACTAGCC
Found at i:25366436 original size:8 final size:8
Alignment explanation
Indices: 25366423--25366447 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
25366413 GACACTCGAG
25366423 GATATGTT
1 GATATGTT
25366431 GATATGTT
1 GATATGTT
25366439 GATATGTT
1 GATATGTT
25366447 G
1 G
25366448 CATTCTCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (8 bp):
GATATGTT
Found at i:25368369 original size:30 final size:29
Alignment explanation
Indices: 25368333--25368393 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
25368323 AAAAGGAAGT
25368333 TTTGGCACTAAGTGTGCAATTTAAACTAGC
1 TTTGGCACTAAGTGTGCAATTT-AACTAGC
*
25368363 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCAATTTAACTAGC
25368392 TT
1 TT
25368394 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCAATTTAACTAGC
Found at i:25370619 original size:30 final size:30
Alignment explanation
Indices: 25370580--25370639 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
25370570 TGTTTTATTG
* *
25370580 TTAATTTTGTTATTATTTTAGGGGCATTTT
1 TTAAATTTGTTATTATTTTAGAGGCATTTT
25370610 TTAAATTTGTTATTATTTTAGAGGCATTTT
1 TTAAATTTGTTATTATTTTAGAGGCATTTT
25370640 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.23, C:0.03, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAAATTTGTTATTATTTTAGAGGCATTTT
Found at i:25370777 original size:11 final size:11
Alignment explanation
Indices: 25370761--25370790 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
25370751 TATATATATT
25370761 TAAAAATTATA
1 TAAAAATTATA
*
25370772 TAAAAATAATA
1 TAAAAATTATA
25370783 TAAAAATT
1 TAAAAATT
25370791 TAATACAAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:25380541 original size:19 final size:19
Alignment explanation
Indices: 25380517--25380554 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
25380507 AATTTAAGAT
25380517 GTTCTCGAGTATCTTCATG
1 GTTCTCGAGTATCTTCATG
*
25380536 GTTCTCGTGTATCTTCATG
1 GTTCTCGAGTATCTTCATG
25380555 TGGCAGTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.45
Consensus pattern (19 bp):
GTTCTCGAGTATCTTCATG
Found at i:25383046 original size:16 final size:16
Alignment explanation
Indices: 25382993--25383046 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
25382983 ATTTACTATT
25382993 TATAA-AAGATATTTA
1 TATAATAAGATATTTA
**
25383008 T-TAATTAAG-TAACTA
1 TATAA-TAAGATATTTA
*
25383023 TATTATAAGATATTTA
1 TATAATAAGATATTTA
25383039 TATAATAA
1 TATAATAA
25383047 ATAAATTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 7
0.69 0.14 0.17
Matches are distributed among these distances:
14 3 0.10
15 10 0.34
16 16 0.55
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43
Consensus pattern (16 bp):
TATAATAAGATATTTA
Found at i:25391259 original size:24 final size:24
Alignment explanation
Indices: 25391227--25391273 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
25391217 CTGTCAGGAG
*
25391227 AGGACTTAGGAGCTGATAAGGGAT
1 AGGACTTAGGAGCTAATAAGGGAT
* *
25391251 AGGATTTAGGAGCTAATTAGGGA
1 AGGACTTAGGAGCTAATAAGGGA
25391274 GAACAGTGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.36, T:0.23
Consensus pattern (24 bp):
AGGACTTAGGAGCTAATAAGGGAT
Found at i:25392721 original size:27 final size:27
Alignment explanation
Indices: 25392681--25392773 Score: 118
Period size: 27 Copynumber: 3.4 Consensus size: 27
25392671 AGGAAGCGTC
*
25392681 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
25392708 CTGGTTGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
25392735 CTGGTGGCTCTGCCACAATTATCT-ATT
1 CTGGTGGCTCTGCCACAATTATCTGA-T
*
25392762 CTGGTGACTCTG
1 CTGGTGGCTCTG
25392774 TAACATTATC
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
26 2 0.04
27 53 0.93
28 2 0.04
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:25394704 original size:16 final size:15
Alignment explanation
Indices: 25394675--25394724 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 15
25394665 TAATATAAAG
25394675 TGAATTGAAATATAT
1 TGAATTGAAATATAT
25394690 TGAATTGAGAATATAT
1 TGAATTGA-AATATAT
25394706 CTGATTAATTGAAATATAT
1 -TG---AATTGAAATATAT
25394725 ACTGATTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.27
16 7 0.23
17 2 0.07
19 7 0.23
20 6 0.20
ACGTcount: A:0.44, C:0.02, G:0.14, T:0.40
Consensus pattern (15 bp):
TGAATTGAAATATAT
Found at i:25394717 original size:20 final size:20
Alignment explanation
Indices: 25394692--25394731 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
25394682 AAATATATTG
25394692 AATTGAGAATATAT-CTGATT
1 AATTGA-AATATATACTGATT
25394712 AATTGAAATATATACTGATT
1 AATTGAAATATATACTGATT
25394732 GAAAACTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.40
Consensus pattern (20 bp):
AATTGAAATATATACTGATT
Found at i:25395090 original size:18 final size:18
Alignment explanation
Indices: 25395067--25395169 Score: 93
Period size: 18 Copynumber: 5.8 Consensus size: 18
25395057 TAAATAAAGG
25395067 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
* * *
25395085 TACTGAATAATTGACTGT
1 TACTGAATAACTGATTAT
* * *
25395103 TGCTGAATAAAC-GACTGT
1 TACTGAAT-AACTGATTAT
* *
25395121 TACTGAATAAATTATTAT
1 TACTGAATAACTGATTAT
*
25395139 TACTGAATAACTGATTAA
1 TACTGAATAACTGATTAT
*
25395157 TACT-AATGACTGA
1 TACTGAATAACTGA
25395170 CTGATACTGA
Statistics
Matches: 69, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
17 10 0.14
18 57 0.83
19 2 0.03
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:25397449 original size:49 final size:47
Alignment explanation
Indices: 25397193--25397505 Score: 171
Period size: 49 Copynumber: 6.6 Consensus size: 47
25397183 CTTGTGTGCC
* * * * * *
25397193 AGTGTCAGACATGTCTGGGACATGCATCGGCCAC--AATATGATACCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CACGTAAGATGAGAGCT
* * *
25397239 AGTGGAAGACCATGTCTGGGACATG-AT-ATTG-ACGTAGAGAATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACATGCATCA--GCACGTA-AG-ATGAGAGCT
* * * * *
25397288 AGTGTAAGACATGTTTGGGACATGCATCGACCTCG-ACGATGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-AGCACGTAAGATGAGAGCT
* * * * *
25397335 AGTGTAAGACGTGTCTGGGACACGCATC-G-GC-TAAGA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACGTAAGATG-AGAGCT
* *
25397379 AGTGTAAGAAATGTCAGGGACATGCATCAGCACGTATAGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACGTA-AGATGAGAGCT
* * * * * *
25397427 AGTATAAGACCATGTCTGGGACATGGCATCAACCTCG-ATGATGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCACGTAAGATGAGAGCT
*
25397476 AGTGTAAGACCATGTCCGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
25397506 GGCAACATAT
Statistics
Matches: 205, Mismatches: 41, Indels: 39
0.72 0.14 0.14
Matches are distributed among these distances:
43 1 0.00
44 31 0.15
45 3 0.01
46 10 0.05
47 50 0.24
48 31 0.15
49 66 0.32
50 8 0.04
51 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCACGTAAGATGAGAGCT
Found at i:25398331 original size:55 final size:55
Alignment explanation
Indices: 25398265--25398399 Score: 207
Period size: 55 Copynumber: 2.4 Consensus size: 55
25398255 GCACTTAAAA
* * * *
25398265 TTTAAAGTCAGTGTTGTACACGGGTAGGCCAGACGGGCGTATGTCATGGCCGTGT
1 TTTAAAGTCAGTGTTGTACAAGGGCAGGCCACACGGGCGTATGCCATGGCCGTGT
*
25398320 TTTAAAGTCAGTGTTGTACAAGGGCAGGCCACACGGGCGTGTGCCATGGCCGTGT
1 TTTAAAGTCAGTGTTGTACAAGGGCAGGCCACACGGGCGTATGCCATGGCCGTGT
*
25398375 TTTAAAGTCAGTGTTGCACATAGGG
1 TTTAAAGTCAGTGTTGTACA-AGGG
25398400 TAAGGGCACG
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 69 0.95
56 4 0.05
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.27
Consensus pattern (55 bp):
TTTAAAGTCAGTGTTGTACAAGGGCAGGCCACACGGGCGTATGCCATGGCCGTGT
Found at i:25398410 original size:55 final size:53
Alignment explanation
Indices: 25398265--25398416 Score: 187
Period size: 55 Copynumber: 2.8 Consensus size: 53
25398255 GCACTTAAAA
* * * *
25398265 TTTAAAGTCAGTGTTGTACACGGGTAGGCCAGACGGGCGTATGTCATGGCCGTGT
1 TTTAAAGTCAGTGTTGTACAAGGGTAGG--ACACGGGCGTGTGCCATGGCCGTGT
*
25398320 TTTAAAGTCAGTGTTGTACAAGGGCAGGCCACACGGGCGTGTGCCATGGCCGTGT
1 TTTAAAGTCAGTGTTGTACAAGGGTAGG--ACACGGGCGTGTGCCATGGCCGTGT
* *
25398375 TTTAAAGTCAGTGTTGCACATAGGGTAAGGGCACGGGCGTGT
1 TTTAAAGTCAGTGTTGTACA-AGGGT-AGGACACGGGCGTGT
25398417 CCTAAGCAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
55 80 0.92
56 4 0.05
57 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.35, T:0.26
Consensus pattern (53 bp):
TTTAAAGTCAGTGTTGTACAAGGGTAGGACACGGGCGTGTGCCATGGCCGTGT
Found at i:25406769 original size:19 final size:20
Alignment explanation
Indices: 25406741--25406781 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
25406731 TTGAAAAGTC
*
25406741 AACATTAGGTGAAAT-TAAT
1 AACATAAGGTGAAATATAAT
*
25406760 AACATAAGGTGTAATATAAT
1 AACATAAGGTGAAATATAAT
25406780 AA
1 AA
25406782 TACCTAAGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.51, C:0.05, G:0.15, T:0.29
Consensus pattern (20 bp):
AACATAAGGTGAAATATAAT
Found at i:25407677 original size:49 final size:48
Alignment explanation
Indices: 25407620--25407839 Score: 189
Period size: 49 Copynumber: 4.6 Consensus size: 48
25407610 CTTGTGTGCG
25407620 AGTGTAAGACCATGTCTGGGACATGCATCAAGCCCCGATGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-AGCCCCGATGATGATAGCC
* * * * *** * *
25407669 AGTGTAAGA-CGTGTCTGGGTCACGCATCGGCTAAGA-GTTG-T-GCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCCCGATGATGATAGCC
* * * *
25407713 AGTGTAAGA-CATGTCTGGGACATGCATCAGCACCTATAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCCCGAT-GATGATAGCC
* * * **
25407761 AGTATAAGACCATGTTTGGGACATGGCATCAACCTTGATGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCCCGATGATGATAGCC
* *
25407810 AGTGTAAGACCATGTCCGAGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACAT-GCATC
25407840 GACAACATAT
Statistics
Matches: 133, Mismatches: 32, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
44 30 0.23
45 1 0.01
46 6 0.05
47 4 0.03
48 27 0.20
49 56 0.42
50 9 0.07
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCCCCGATGATGATAGCC
Found at i:25417746 original size:47 final size:47
Alignment explanation
Indices: 25417695--25418095 Score: 649
Period size: 47 Copynumber: 8.5 Consensus size: 47
25417685 ATTATTCATT
*
25417695 TGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
25417742 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
25417789 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
25417836 TGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
25417885 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGAGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
25417932 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* **
25417979 TGAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * * * * *
25418026 TGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
25418073 TGAAAGTGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
25418096 CCCCGAAGGG
Statistics
Matches: 333, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 289 0.87
49 44 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:25418019 original size:190 final size:188
Alignment explanation
Indices: 25417695--25418095 Score: 685
Period size: 190 Copynumber: 2.1 Consensus size: 188
25417685 ATTATTCATT
* *
25417695 TGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGAGATGAATGTGAAAGTGTATATATGTG
25417760 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
66 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
* * *
25417825 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATG
131 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGACCGAATGGCCAACGTGATGAATG
25417885 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGAGATGAATGTGAAAGTGTATATATGTG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGAGATGAATGTGAAAGTGTATATATGTG
*
25417950 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTAA
66 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
* * * *
25418015 TGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATG
131 TGTGATGAATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAACGTGATGAATG
*
25418073 TGAAAGTGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
25418096 CCCCGAAGGG
Statistics
Matches: 200, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
188 54 0.27
190 146 0.73
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (188 bp):
TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGAGATGAATGTGAAAGTGTATATATGTG
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
TGTGATGAATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAACGTGATGAATG
Found at i:25419517 original size:40 final size:40
Alignment explanation
Indices: 25419473--25419664 Score: 267
Period size: 40 Copynumber: 4.8 Consensus size: 40
25419463 GAGAATTGAG
25419473 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
25419513 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
25419553 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
25419593 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
25419633 GGTGTTATATCTGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
25419665 ATCATGCTGG
Statistics
Matches: 133, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 133 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:25423237 original size:47 final size:47
Alignment explanation
Indices: 25423186--25423537 Score: 596
Period size: 47 Copynumber: 7.5 Consensus size: 47
25423176 ATTATTCATT
25423186 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
25423233 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
25423280 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
25423327 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
25423374 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* ** *
25423421 TGAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATA
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * * * * *
25423468 TGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
25423515 TGAAAGTGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
25423538 TCCCGAAGGG
Statistics
Matches: 291, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 291 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:25425192 original size:43 final size:43
Alignment explanation
Indices: 25425128--25425210 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
25425118 CTAAGTCACA
*
25425128 CATCCACAATGAACTCGGACCACTCAACGAGCTCGGATGCTCG
1 CATCCACAATGAACTCAGACCACTCAACGAGCTCGGATGCTCG
* *
25425171 CATCCATAATGAACTCAGACCACTCAATGAGCTCGGATGC
1 CATCCACAATGAACTCAGACCACTCAACGAGCTCGGATGC
25425211 CATATATCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.30, C:0.33, G:0.19, T:0.18
Consensus pattern (43 bp):
CATCCACAATGAACTCAGACCACTCAACGAGCTCGGATGCTCG
Found at i:25425249 original size:42 final size:43
Alignment explanation
Indices: 25425138--25425282 Score: 120
Period size: 43 Copynumber: 3.4 Consensus size: 43
25425128 CATCCACAAT
* * *
25425138 GAACTCGGACCACTCAACGAGCTCGG-ATGCTCGCATCCATA--AT
1 GAACTCGGACCACTCAACAAGCTCGGAAT-CT--CATACATATCAC
* ** * *
25425181 GAACTCAGACCACTCAATGAGCTCGG-ATGC-CATATATCTCAC
1 GAACTCGGACCACTCAACAAGCTCGGAAT-CTCATACATATCAC
* *
25425223 GAACTTGGACCACTCAACAAGTTCGGAATCTCATACATATCAC
1 GAACTCGGACCACTCAACAAGCTCGGAATCTCATACATATCAC
*
25425266 GAACTCGGACCGCTCAA
1 GAACTCGGACCACTCAA
25425283 TAGGCTCAGA
Statistics
Matches: 83, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
40 5 0.06
42 23 0.28
43 55 0.66
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (43 bp):
GAACTCGGACCACTCAACAAGCTCGGAATCTCATACATATCAC
Found at i:25427746 original size:17 final size:17
Alignment explanation
Indices: 25427724--25427758 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
25427714 TCCCTATTCG
25427724 AAACAATAGATAGTTTC
1 AAACAATAGATAGTTTC
25427741 AAACAATAGATAGTTTC
1 AAACAATAGATAGTTTC
25427758 A
1 A
25427759 CTCCATGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (17 bp):
AAACAATAGATAGTTTC
Found at i:25448858 original size:589 final size:588
Alignment explanation
Indices: 25447738--25448921 Score: 2124
Period size: 589 Copynumber: 2.0 Consensus size: 588
25447728 TTTGGCCAAG
* * *
25447738 GTTTT-GGTATAGGTAAAATAAATATGAATTGGTCAGAAAACTATTTCCATAATGAAGTGGTATA
1 GTTTTCGGTATAGGTAAAACAAATATGAATTGGTCAGAAAACTATTTCAATAATGAAGTGGCATA
25447802 TATTCAGTTATAAGGTGGGATGGAATAAAATGATAATGATTAATTTGTGATTCTACATTGCTTAT
66 TATTCAGTTATAAGGTGGGATGGAATAAAATGATAATGATTAATTTGTGATTCTACATTGCTTAT
25447867 ACAAATACTTATGCATATGATAATTTGATTGTCATGTTTGACATATGGTAGGTAATATTTATGTT
131 ACAAATACTTATGCATATGATAATTTGATTGTCATGTTTGACATATGGTAGGTAATATTTATGTT
*
25447932 TTGGATATATCTGTATGTAGTTAATGCCTTGTAATGATAAAAATAATCTTCTTTAGTTAATAAGT
196 TTGGATATATCTGTATGTAGTTAATGCCTTGTAATGATAAAAATAATCTTATTTAGTTAATAAGT
*
25447997 ATTTTCATTCAACTTAGTTGAATCGTGATTACATGCATGTTTTTGAATGGGTTTTAGATGCTCAA
261 ATTTTCATTCAACTTAGTTGAATCGTGATTACATGCATGGTTTTGAATGGGTTTTAGATGCTCAA
* * *
25448062 ATTCGATTGTGATAGTTAGGTAATGTACTGAATAAGTAGTGATAGGTTGGATATGTTGTTTGGAC
326 ATTCGATTGTGATAGTGAGGTAATGTACTGAATAAGTAGTGATAAGTTGGATATGTTGTTTGAAC
* * *
25448127 TTATTAATTTATATTATTAGGGTTCTGTAAATGTGATTAAAAATTAGGTTATTATAGTATGTATG
391 TTATTAATTTATATTATTAAGGTTCGGTAAATGTGATTAAAAATTAGGTAATTATAGTATGTATG
25448192 TATTAGGTTGCGGTGTATAAAATGTTGGAAAAACTATGTTATATTTTATGTATAATAATTTAAAC
456 TATTAGGTTGCGGTGTATAAAATGTTGGAAAAACTATGTTATATTTTATGTATAATAATTTAAAC
25448257 ATTTGAAGTGTATAAACTTGTAAAATGATTGAGATAAGTTGTAAGTGAGTTGTTGTCTAAACAAA
521 ATTTGAAGTGTATAAACTTGTAAAATGATTGAGATAAGTTGTAAGTGAGTTGTTGTCTAAACAAA
25448322 CTT
586 CTT
* *
25448325 GTTTTCGGTATAGGTAAAACAAATTTGAATTGG-CTGGAAAACTATTTCAATAATGAAGTGGCAT
1 GTTTTCGGTATAGGTAAAACAAATATGAATTGGTC-AGAAAACTATTTCAATAATGAAGTGGCAT
*
25448389 ATATTCAGTTATAAGGTGGGATGGAATAAAATGATAATGATTAATTTGTGATT-TGGCATTGCTT
65 ATATTCAGTTATAAGGTGGGATGGAATAAAATGATAATGATTAATTTGTGATTCT-ACATTGCTT
25448453 ATACAAATACTTATGCATATGATAATTTGACTTGTCATGTTTGACATATGGTAGGTAATATTTAT
129 ATACAAATACTTATGCATATGATAATTTGA-TTGTCATGTTTGACATATGGTAGGTAATATTTAT
*
25448518 GTTTTGGATATATCTGTATGTAGTTAATGTCTTGTAATGATAAAAATAATCTTATTTAGTTAATA
193 GTTTTGGATATATCTGTATGTAGTTAATGCCTTGTAATGATAAAAATAATCTTATTTAGTTAATA
* *
25448583 AGTATTTTCATTCAACTTAGTTGAATCGTGATTACGTGCATGGTTTTGAGTGGGTTTTAGATGCT
258 AGTATTTTCATTCAACTTAGTTGAATCGTGATTACATGCATGGTTTTGAATGGGTTTTAGATGCT
* * *
25448648 CAAATTATGTTTGTGATAGTGAGGTAATGTACTGAATAAGTAGTTATAAGTTGGATATGTTGTTT
323 CAAATT-CGATTGTGATAGTGAGGTAATGTACTGAATAAGTAGTGATAAGTTGGATATGTTGTTT
25448713 GAACTTATTAATTTATATTATTAAGGTTCGGTAAATGTGATT-AAAATTAGGTAATTATAGTATG
387 GAACTTATTAATTTATATTATTAAGGTTCGGTAAATGTGATTAAAAATTAGGTAATTATAGTATG
25448777 TATGTATTAGGTTGCGGTGTATAAAATGTTGGAAAAACTATGTTATATTTTATGTATAATAATTT
452 TATGTATTAGGTTGCGGTGTATAAAATGTTGGAAAAACTATGTTATATTTTATGTATAATAATTT
25448842 AAACATTTGAAGTGTATAAACTTGTAAAATGATTGAGATAAGTTGTAAGTGAGTTGTTGTCTAAA
517 AAACATTTGAAGTGTATAAACTTGTAAAATGATTGAGATAAGTTGTAAGTGAGTTGTTGTCTAAA
25448907 CAAACTT
582 CAAACTT
25448914 GTTTTCGG
1 GTTTTCGG
25448922 CTAAATGCAT
Statistics
Matches: 572, Mismatches: 20, Indels: 8
0.95 0.03 0.01
Matches are distributed among these distances:
587 7 0.01
588 142 0.25
589 331 0.58
590 92 0.16
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.41
Consensus pattern (588 bp):
GTTTTCGGTATAGGTAAAACAAATATGAATTGGTCAGAAAACTATTTCAATAATGAAGTGGCATA
TATTCAGTTATAAGGTGGGATGGAATAAAATGATAATGATTAATTTGTGATTCTACATTGCTTAT
ACAAATACTTATGCATATGATAATTTGATTGTCATGTTTGACATATGGTAGGTAATATTTATGTT
TTGGATATATCTGTATGTAGTTAATGCCTTGTAATGATAAAAATAATCTTATTTAGTTAATAAGT
ATTTTCATTCAACTTAGTTGAATCGTGATTACATGCATGGTTTTGAATGGGTTTTAGATGCTCAA
ATTCGATTGTGATAGTGAGGTAATGTACTGAATAAGTAGTGATAAGTTGGATATGTTGTTTGAAC
TTATTAATTTATATTATTAAGGTTCGGTAAATGTGATTAAAAATTAGGTAATTATAGTATGTATG
TATTAGGTTGCGGTGTATAAAATGTTGGAAAAACTATGTTATATTTTATGTATAATAATTTAAAC
ATTTGAAGTGTATAAACTTGTAAAATGATTGAGATAAGTTGTAAGTGAGTTGTTGTCTAAACAAA
CTT
Found at i:25455043 original size:37 final size:37
Alignment explanation
Indices: 25454993--25455071 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
25454983 TTATTACGAA
* * *
25454993 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
25455030 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
25455067 GTCTT
1 GTCTT
25455072 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:25455277 original size:47 final size:47
Alignment explanation
Indices: 25455190--25455637 Score: 653
Period size: 47 Copynumber: 9.4 Consensus size: 47
25455180 CCTTTCGGGA
* * * * * * * *
25455190 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25455237 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25455284 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25455331 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
25455378 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25455425 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25455472 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGC
25455523 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25455572 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25455619 CTTATCACACATATACACT
1 CTTATCACATATATACACT
25455638 CTCTTGGCTG
Statistics
Matches: 369, Mismatches: 26, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
47 282 0.76
49 42 0.11
51 41 0.11
53 4 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25459056 original size:37 final size:37
Alignment explanation
Indices: 25459006--25459084 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
25458996 TTATTACGAA
* ** *
25459006 GTCTTACCCGGACATAATCTTCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
25459043 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
25459080 GTCTT
1 GTCTT
25459085 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:25459329 original size:47 final size:47
Alignment explanation
Indices: 25459205--25459627 Score: 627
Period size: 47 Copynumber: 9.0 Consensus size: 47
25459195 TTTCGGGACT
* * * * * * *
25459205 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * * *
25459252 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
25459301 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
25459348 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
25459397 TAT---GTATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
25459441 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTCGGCCT
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
25459488 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
25459535 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
25459582 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCC
25459628 TTACTATCAT
Statistics
Matches: 350, Mismatches: 19, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
44 42 0.12
47 227 0.65
49 81 0.23
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:25463297 original size:120 final size:120
Alignment explanation
Indices: 25463084--25463465 Score: 520
Period size: 120 Copynumber: 3.2 Consensus size: 120
25463074 CAGCATGATT
* * * * * *
25463084 GCTCTTCGAGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAC
1 GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
* *
25463149 ATCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAC
66 ATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAA
25463204 GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
1 GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
* * *
25463269 ATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAAT
66 ATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAA
**
25463324 GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTT
1 GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
* * * ** * *
25463389 AGTAATTCGCACCAATGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAA
66 A-TCACTAGCATGAATGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAAA
25463445 GC-CTTCGGGACTTAGCCCGGA
1 GCTCTTCGGGACTTAGCCCGGA
25463466 CATCATTCGA
Statistics
Matches: 236, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
119 3 0.01
120 209 0.89
121 19 0.08
122 5 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
ATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAA
Found at i:25463412 original size:40 final size:40
Alignment explanation
Indices: 25463070--25463386 Score: 526
Period size: 40 Copynumber: 7.9 Consensus size: 40
25463060 CGAATACACG
* * * * * *
25463070 TCACCAGCATGATTGCTCTTCGAGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
25463110 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
25463150 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
25463190 TCACTAGCACGAACGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25463230 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25463270 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25463310 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25463350 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
25463387 TTAGTAATTC
Statistics
Matches: 259, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 259 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:25463419 original size:40 final size:40
Alignment explanation
Indices: 25463087--25463465 Score: 241
Period size: 40 Copynumber: 9.5 Consensus size: 40
25463077 CATGATTGCT
* * * *
25463087 CTTCGAGATTTAGCACGGATATA-TC-ACTAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAATTAGCAC-AATGC
* * ** *
25463126 TCTTCGGAACTTAGCCCGGATACA-TC-GCTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAATTAGCA-CAATGC
* *
25463166 TCTTCGGGACTTAGCCCGGATATA-TC-ACTAGCACGAACGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAATTAGCAC-AATGC
* * *
25463206 TCTTCGGGACTTAGCCCGGATACA-TC-ACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAATTAGCA-CAATGC
* * *
25463246 TCTTCGGGACTTAGCCCGGATACA-TC-ACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAATTAGCA-CAATGC
* * *
25463286 TCTTCGGGACTTAGCCCGGATACA-TC-ACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAATTAGCA-CAATGC
* * *
25463326 TCTTCGGGACTTAGCCCGGATACA-TC-ACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAATTAGCA-CAATGC
* *
25463366 TCTTCGGGACTTAGCCCGGATTTAGT-AATTCGCACCAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAATTAGCA-CAATGC
* * * *
25463407 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAATTAGCACAATGC
25463447 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
25463466 CATCATTCGA
Statistics
Matches: 303, Mismatches: 28, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.01
40 280 0.92
41 20 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCAATTAGCACAATGC
Found at i:25463816 original size:29 final size:29
Alignment explanation
Indices: 25463777--25463855 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
25463767 CTTAATAATC
*
25463777 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
25463807 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
25463836 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
25463856 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:25465800 original size:37 final size:37
Alignment explanation
Indices: 25465750--25465828 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
25465740 TTATTACGAA
* ** *
25465750 GTCTTACCCGGACATAATCTTCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
25465787 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
25465824 GTCTT
1 GTCTT
25465829 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:25466073 original size:47 final size:47
Alignment explanation
Indices: 25465949--25466374 Score: 645
Period size: 47 Copynumber: 9.0 Consensus size: 47
25465939 CTTCGGGACT
* * * * * * *
25465949 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * * *
25465996 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
25466045 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
25466092 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
25466141 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
25466188 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGACCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
25466235 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
25466282 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
25466329 TATCACGTATACACACTTTCACATTCATCACATCGACCATTAGGCC
1 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCC
25466375 TTACTATCAT
Statistics
Matches: 354, Mismatches: 21, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
47 270 0.76
49 84 0.24
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.30
Consensus pattern (47 bp):
TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:25468761 original size:72 final size:72
Alignment explanation
Indices: 25468644--25468787 Score: 236
Period size: 72 Copynumber: 2.0 Consensus size: 72
25468634 ATATAACATT
*
25468644 TAATTATTTATAAGACTCGGTTTCGTGGTCCCGAAACCACTTTCCGACTAGGGTCACTTTAGGGA
1 TAATTATTTATAAGACTCGGTTTAGTGGTCCCGAAACCACTTTCCGACTAGGGTCACTTTAGGGA
25468709 TGTCACA
66 TGTCACA
* *
25468716 TAATTATCTT-TATGACTTGGTTTAGTGGTCCCGAAACCACTTTCCGACTAGGGTCACTTTAGGG
1 TAATTAT-TTATAAGACTCGGTTTAGTGGTCCCGAAACCACTTTCCGACTAGGGTCACTTTAGGG
*
25468780 GTGTCACA
65 ATGTCACA
25468788 CAGACCATGT
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
72 65 0.97
73 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (72 bp):
TAATTATTTATAAGACTCGGTTTAGTGGTCCCGAAACCACTTTCCGACTAGGGTCACTTTAGGGA
TGTCACA
Found at i:25470541 original size:12 final size:12
Alignment explanation
Indices: 25470524--25470550 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25470514 ATTCCGAAGT
25470524 ATATATATATAC
1 ATATATATATAC
25470536 ATATATATATAC
1 ATATATATATAC
25470548 ATA
1 ATA
25470551 AGGATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:25471066 original size:27 final size:27
Alignment explanation
Indices: 25471035--25471212 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
25471025 TAAATTGTAC
* *
25471035 AGCACTAAGTGTGCGATTTAACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
25471062 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
25471088 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
25471116 GGCACTAAGTGTGCGAGGTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
25471144 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
25471171 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
25471198 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25471213 GACTCAAAAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:25471096 original size:54 final size:55
Alignment explanation
Indices: 25471035--25471212 Score: 209
Period size: 54 Copynumber: 3.3 Consensus size: 55
25471025 TAAATTGTAC
* * **
25471035 AGCACTAAGTGTGCGATTTAACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
25471090 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-GTTGAATATGAT
* * *
25471144 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
25471198 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25471213 GACTCAAAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
54 61 0.59
55 43 0.41
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:25471152 original size:82 final size:81
Alignment explanation
Indices: 25471036--25471191 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
25471026 AAATTGTACA
* * *
25471036 GCACTAAGTGTGCGATTTAACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25471100 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
25471117 GCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-GTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25471182 TGCGAGTTGA
65 TGCGAATTGA
25471192 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25471203 original size:82 final size:81
Alignment explanation
Indices: 25471032--25471212 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
25471022 GATTAAATTG
* * *
25471032 TACAGCACTAAGTGTGCGATTTAACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25471097 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
25471113 TGCGGCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-GTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25471177 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25471195 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25471213 GACTCAAAAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25482952 original size:40 final size:40
Alignment explanation
Indices: 25482870--25483087 Score: 239
Period size: 40 Copynumber: 5.5 Consensus size: 40
25482860 AAGCCAAGTA
* * * *
25482870 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGC-TCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACCAATG
*
25482908 CCTTCGGGACATAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACCAATG
* *
25482948 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACCAATG
* * *
25482988 CCTTCGGGACTTACCCCGAATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACCAATG
* * * *
25483028 CCTTCGGGAATTAGCCCGGA-ACTAGTCACT-AGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CAC-CAATG
25483069 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
25483088 TTATCATCCA
Statistics
Matches: 155, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 12 0.08
39 16 0.10
40 105 0.68
41 22 0.14
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACCAATG
Found at i:25483011 original size:80 final size:79
Alignment explanation
Indices: 25482870--25483086 Score: 280
Period size: 80 Copynumber: 2.7 Consensus size: 79
25482860 AAGCCAAGTA
* * * * *
25482870 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGAATTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAG
25482933 TAACTCACACCAATG
65 TAACTCACACCAATG
* *
25482948 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTACCCCGAATATAG
1 CCTTCGGGAATTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAG
*
25483013 TAACTCGCACCAATG
65 TAACTCACACCAATG
25483028 CCTTCGGGAATTAGCCCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGCCCG
1 CCTTCGGGAATTAGCCCGGATA-TAGT-ACT--CGCACAAATGCCTTCGGGACTTAGCCCG
25483087 GTTATCATCC
Statistics
Matches: 123, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
78 13 0.11
79 18 0.15
80 66 0.54
81 22 0.18
82 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (79 bp):
CCTTCGGGAATTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT
AACTCACACCAATG
Found at i:25493046 original size:29 final size:29
Alignment explanation
Indices: 25492922--25493044 Score: 176
Period size: 29 Copynumber: 4.3 Consensus size: 29
25492912 TATGAGCATG
25492922 CATAT-AAGGTGATTTGGGCCTAACGGGC
1 CATATAAAGGTGATTTGGGCCTAACGGGC
25492950 CATATAAAGGTGATTTGGGCCTAACGGGC
1 CATATAAAGGTGATTTGGGCCTAACGGGC
* *
25492979 CATATAAAGGTGATTTGGGCCTGATGGGC
1 CATATAAAGGTGATTTGGGCCTAACGGGC
* * * *
25493008 CATATGAATGTGAATTGGGCCTAATGGGC
1 CATATAAAGGTGATTTGGGCCTAACGGGC
*
25493037 TATATAAA
1 CATATAAA
25493045 TGAGATTGGG
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 5 0.06
29 81 0.94
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
CATATAAAGGTGATTTGGGCCTAACGGGC
Found at i:25493069 original size:28 final size:29
Alignment explanation
Indices: 25492935--25493069 Score: 103
Period size: 29 Copynumber: 4.7 Consensus size: 29
25492925 ATAAGGTGAT
** * * *
25492935 TTGGGCCTAACGGGCCATATAAAGGTGAT
1 TTGGGCCTAATAGGCCATATAAATGAGAA
** * * *
25492964 TTGGGCCTAACGGGCCATATAAAGGTGAT
1 TTGGGCCTAATAGGCCATATAAATGAGAA
* * * *
25492993 TTGGGCCTGATGGGCCATATGAATGTGAA
1 TTGGGCCTAATAGGCCATATAAATGAGAA
* *
25493022 TTGGGCCTAATGGGCTATATAAATGAG-A
1 TTGGGCCTAATAGGCCATATAAATGAGAA
25493050 TTGGG-CTAAGTAGGCCATAT
1 TTGGGCCTAA-TAGGCCATAT
25493070 GCATGTATGT
Statistics
Matches: 94, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
27 4 0.04
28 14 0.15
29 76 0.81
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATAGGCCATATAAATGAGAA
Found at i:25516071 original size:39 final size:39
Alignment explanation
Indices: 25515980--25516072 Score: 105
Period size: 39 Copynumber: 2.4 Consensus size: 39
25515970 GGTCTTTAAC
* * * * *
25515980 CCGGATATTTTTCCATCATGTAGGCTGCGGACCTCAAGT
1 CCGGATATTTTTCTAGCATATAGCCTGCGAACCTCAAGT
* * * *
25516019 CCAGATATATTTCTAGCATATAGCCTGCGAATCTCATGT
1 CCGGATATTTTTCTAGCATATAGCCTGCGAACCTCAAGT
25516058 CCGGATATTTTTCTA
1 CCGGATATTTTTCTA
25516073 TCTCAAACAC
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (39 bp):
CCGGATATTTTTCTAGCATATAGCCTGCGAACCTCAAGT
Found at i:25518616 original size:43 final size:44
Alignment explanation
Indices: 25518496--25518640 Score: 147
Period size: 43 Copynumber: 3.4 Consensus size: 44
25518486 AGCTTGTTTA
* * *
25518496 ATGCCAACGTCCTAGACGTGGTCTTACACGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATGGCCTTACACGTAAATCAAATATCG
** * *
25518539 ATGCCATTGTCCCAGACAGGGTCC-TACATG-AAATCAAATAT-G
1 ATGCCAACGTCCCAGACATGG-CCTTACACGTAAATCAAATATCG
* *
25518581 ATGCCAACGTCCCAGACATGGCCTTACACGTAAATCATAA-GTCA
1 ATGCCAACGTCCCAGACATGGCCTTACACGTAAATCA-AATATCG
*
25518625 ATGCCAACATCCCAGA
1 ATGCCAACGTCCCAGA
25518641 TGTAGTCTTA
Statistics
Matches: 82, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.02
42 24 0.29
43 38 0.46
44 18 0.22
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGCCTTACACGTAAATCAAATATCG
Found at i:25525008 original size:8 final size:8
Alignment explanation
Indices: 25524968--25525011 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
25524958 GACATCCCAA
*
25524968 TTTTTGGC
1 TTTTCGGC
*
25524976 TTTTCGAC
1 TTTTCGGC
*
25524984 TTTTCGAC
1 TTTTCGGC
25524992 TTTTCGGC
1 TTTTCGGC
*
25525000 TTTTTGGC
1 TTTTCGGC
25525008 TTTT
1 TTTT
25525012 GCTATTACAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.05, C:0.18, G:0.18, T:0.59
Consensus pattern (8 bp):
TTTTCGGC
Found at i:25525010 original size:16 final size:16
Alignment explanation
Indices: 25524968--25525011 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
25524958 GACATCCCAA
25524968 TTTTTGGCTTTTCGAC
1 TTTTTGGCTTTTCGAC
* * *
25524984 TTTTCGACTTTTCGGC
1 TTTTTGGCTTTTCGAC
25525000 TTTTTGGCTTTT
1 TTTTTGGCTTTT
25525012 GCTATTACAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.05, C:0.18, G:0.18, T:0.59
Consensus pattern (16 bp):
TTTTTGGCTTTTCGAC
Found at i:25528052 original size:50 final size:49
Alignment explanation
Indices: 25527930--25528244 Score: 160
Period size: 46 Copynumber: 6.7 Consensus size: 49
25527920 CACAGGGTAG
25527930 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACT-A-TCATCCATCA
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCA
** *
25527977 AGT--TAATGCCATGTCCCAGATATGGTCTTACACTGACTC-TCACAT-A
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC-CATCA
* * **
25528023 TTAGTGCCGATGCCATGTCCTAGACATGGTCTTACATTGA--CA--CATTT
1 --AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCA
* * * * *
25528070 TGTAGCTGATG-CATGTCCCAGACA-CGTCTTACACTGGCTTACA-CC-TCG
1 AGT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-T-CATCCATCA
* * *
25528118 AG-GTCGATG-CATTTCCAAGACAT-GTCTTACACT-AGCTC-TCGTC-TCA
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATC--CATCA
* * * *
25528164 A-TGCCAATGCCATGTCCCAGACATGGTTTTACATTGGCTC-T-CAT-A
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCA
* *
25528209 ATATGGCCGATG-CATGTCCCACACAT-GTCTTACACT
1 A-GT-GCCGATGCCATGTCCCAGACATGGTCTTACACT
25528245 AGCACATAAA
Statistics
Matches: 205, Mismatches: 35, Indels: 57
0.69 0.12 0.19
Matches are distributed among these distances:
44 12 0.06
45 46 0.22
46 58 0.28
47 34 0.17
48 26 0.13
49 1 0.00
50 28 0.14
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (49 bp):
AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCA
Found at i:25528093 original size:45 final size:47
Alignment explanation
Indices: 25527930--25528105 Score: 145
Period size: 45 Copynumber: 3.8 Consensus size: 47
25527920 CACAGGGTAG
*
25527930 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACT-ATCATCCATCA--
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACCA--CAT-ATT
** *
25527977 AGT--TAATGCCATGTCCCAGATATGGTCTTACACTGACTCTCACATATT
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGA--C-CACATATT
* *
25528025 AGTGCCGATGCCATGTCCTAGACATGGTCTTACATTGA-CACAT-TT
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACCACATATT
* * *
25528070 TGTAGCTGATG-CATGTCCCAGACA-CGTCTTACACTG
1 AGT-GCCGATGCCATGTCCCAGACATGGTCTTACACTG
25528106 GCTTACACCT
Statistics
Matches: 106, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
44 10 0.09
45 44 0.42
46 13 0.12
47 6 0.06
48 3 0.03
49 2 0.02
50 28 0.26
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (47 bp):
AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACCACATATT
Found at i:25533816 original size:80 final size:80
Alignment explanation
Indices: 25533683--25533832 Score: 282
Period size: 80 Copynumber: 1.9 Consensus size: 80
25533673 TATTCGGATG
*
25533683 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
25533748 TTTGTGCTAGCGACC
66 TTTGTGCTAGCGACC
*
25533763 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
25533828 TTTGT
66 TTTGT
25533833 ACGAGTTGCT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCTAGCGACC
Found at i:25533850 original size:40 final size:40
Alignment explanation
Indices: 25533683--25533830 Score: 251
Period size: 40 Copynumber: 3.7 Consensus size: 40
25533673 TATTCGGATG
*
25533683 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
25533723 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
25533763 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
*
25533803 ATATCCGGGCTAAGACCCGAAGGCATTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTT
25533831 GTACGAGTTG
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:25536478 original size:29 final size:29
Alignment explanation
Indices: 25536368--25536480 Score: 165
Period size: 29 Copynumber: 3.9 Consensus size: 29
25536358 ACATACATGG
* * *
25536368 ATATAGCCCACTAGGCCC-AATCTCATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
25536396 ATATGGCCCATTAGGCCCAAATCATATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
25536425 GTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
25536454 ATATGGCCCATTAAGCCCAAATCACAT
1 ATATGGCCCATTAGGCCCAAATCACAT
25536481 GCACATACAT
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
28 16 0.21
29 60 0.79
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:25542013 original size:30 final size:30
Alignment explanation
Indices: 25541956--25542013 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
25541946 ATTTCCGAGC
*
25541956 TTGGGGACAAAAGTGTAATTATGAAAAAGT
1 TTGGGGACAAAAGTGTAATTATCAAAAAGT
* * *
25541986 TTGGGGGCAAAATTGTAATTTTCAAAAA
1 TTGGGGACAAAAGTGTAATTATCAAAAA
25542014 AGTTGGGTGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.29
Consensus pattern (30 bp):
TTGGGGACAAAAGTGTAATTATCAAAAAGT
Found at i:25542490 original size:104 final size:104
Alignment explanation
Indices: 25542349--25542572 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
25542339 TGTATATAAA
** * * *
25542349 AGGGGTTGCTGTGTGCTGATTTCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
25542413 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
25542453 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
25542518 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
25542557 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
25542573 GATATCCATT
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 111 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.32
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:25542624 original size:71 final size:72
Alignment explanation
Indices: 25542491--25542642 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
25542481 TCATTGGTGG
* *
25542491 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
25542556 GAGGGGT
66 GAGGGGT
***
25542563 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
25542627 GAGGGGT
66 GAGGGGT
25542634 TGCTAAGTG
1 TGCTAAGTG
25542643 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:25563051 original size:40 final size:40
Alignment explanation
Indices: 25562688--25563037 Score: 529
Period size: 40 Copynumber: 8.8 Consensus size: 40
25562678 GAGAATTGAG
25562688 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
25562728 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
25562768 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
25562808 AGTGATATATCCGGGCTAAGTCCTGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
25562848 AGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
25562888 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
25562928 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGGT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
25562968 AGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
25563008 GGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAG
25563038 TAATCATGCT
Statistics
Matches: 279, Mismatches: 31, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 279 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:25566577 original size:49 final size:47
Alignment explanation
Indices: 25566391--25566853 Score: 759
Period size: 47 Copynumber: 9.7 Consensus size: 47
25566381 TTAGGATTCT
*
25566391 ATGTGATGGATGTGAACA-TGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
25566438 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
25566485 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
25566532 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
25566581 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
25566630 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
25566677 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
25566723 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * * * *
25566772 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
25566819 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
25566854 TCCCGAAGGG
Statistics
Matches: 397, Mismatches: 13, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 23 0.06
47 232 0.58
48 24 0.06
49 118 0.30
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:25566585 original size:96 final size:96
Alignment explanation
Indices: 25566391--25566853 Score: 762
Period size: 96 Copynumber: 4.9 Consensus size: 96
25566381 TTAGGATTCT
*
25566391 ATGTGATGGATGTGAACA-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
25566455 GTG--TATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATATGTGATAAGGCCTAATGGCCG
25566485 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
25566550 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCG
25566581 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
25566646 AGTG--TATATATGTGATAAGGCCTAATAGCCG
64 AGTGTATATATATGTGATAAGGCCTAATGGCCG
25566677 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
25566741 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCG
* * * * * * *
25566772 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
25566837 TGTATA-A-ATGTGATAAG
66 TGTATATATATGTGATAAG
25566854 TCCCGAAGGG
Statistics
Matches: 351, Mismatches: 10, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
93 23 0.07
94 98 0.28
95 67 0.19
96 116 0.33
98 47 0.13
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:25567028 original size:37 final size:37
Alignment explanation
Indices: 25566972--25567050 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
25566962 CCGAGCTCTA
* * * * *
25566972 AAGACTCGATGACTACGTGTGGGGATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
25567009 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25567046 AAGAC
1 AAGAC
25567051 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25571081 original size:16 final size:14
Alignment explanation
Indices: 25571045--25571072 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25571035 TCAAATGAAA
25571045 ATACATCATTTGAT
1 ATACATCATTTGAT
25571059 ATACATCATTTGAT
1 ATACATCATTTGAT
25571073 TCATACATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (14 bp):
ATACATCATTTGAT
Found at i:25578175 original size:26 final size:24
Alignment explanation
Indices: 25578115--25578163 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
25578105 AGTAATATAG
25578115 TTATACTTTTTTGTCAAAAATCAA
1 TTATACTTTTTTGTCAAAAATCAA
*
25578139 TTATACTTTTTTTTCAAAAATCAA
1 TTATACTTTTTTGTCAAAAATCAA
25578163 T
1 T
25578164 GATATAACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.12, G:0.02, T:0.49
Consensus pattern (24 bp):
TTATACTTTTTTGTCAAAAATCAA
Found at i:25578181 original size:26 final size:26
Alignment explanation
Indices: 25578123--25578205 Score: 66
Period size: 27 Copynumber: 3.3 Consensus size: 26
25578113 AGTTATACTT
25578123 TTTTG-TCAAAAATCAAT--TAT-AC
1 TTTTGATCAAAAATCAATGATATAAC
**
25578145 TTTTTTTTCAAAAATCAATGATATAAC
1 -TTTTGATCAAAAATCAATGATATAAC
* * * *
25578172 TTTTGATCAATAACCAAAAGATATAAA
1 TTTTGATCAAAAATC-AATGATATAAC
25578199 TTTTGAT
1 TTTTGAT
25578206 TAATTACACC
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
23 4 0.08
24 12 0.25
26 14 0.29
27 18 0.38
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.41
Consensus pattern (26 bp):
TTTTGATCAAAAATCAATGATATAAC
Found at i:25578628 original size:26 final size:26
Alignment explanation
Indices: 25578599--25578650 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
25578589 CACAAAGCAA
25578599 AATGGTAGCAAATGTTGCTCATTGGT
1 AATGGTAGCAAATGTTGCTCATTGGT
25578625 AATGGTAGCAAATGTTGCTCATTGGT
1 AATGGTAGCAAATGTTGCTCATTGGT
25578651 TGTCTAACGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.35
Consensus pattern (26 bp):
AATGGTAGCAAATGTTGCTCATTGGT
Found at i:25579715 original size:13 final size:14
Alignment explanation
Indices: 25579692--25579724 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
25579682 TTGATTTCTC
25579692 GAAAT-AGAAATGA
1 GAAATGAGAAATGA
25579705 -AAATGAGAAATGA
1 GAAATGAGAAATGA
25579718 GAAATGA
1 GAAATGA
25579725 ATTCATTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 8 0.44
14 6 0.33
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.15
Consensus pattern (14 bp):
GAAATGAGAAATGA
Found at i:25579717 original size:7 final size:7
Alignment explanation
Indices: 25579692--25579724 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
25579682 TTGATTTCTC
25579692 GAAAT-A
1 GAAATGA
25579698 GAAATGA
1 GAAATGA
25579705 -AAATGA
1 GAAATGA
25579711 GAAATGA
1 GAAATGA
25579718 GAAATGA
1 GAAATGA
25579725 ATTCATTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 11 0.44
7 14 0.56
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.15
Consensus pattern (7 bp):
GAAATGA
Found at i:25580945 original size:6 final size:6
Alignment explanation
Indices: 25580929--25580967 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
25580919 TTTCTTTCCA
* *
25580929 TTCTCTT TTCTTT TTCTTT TTCTTC TTATTT TTCTTT TT
1 TTCT-TT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TT
25580968 GCTTATTTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
6 24 0.86
7 4 0.14
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (6 bp):
TTCTTT
Found at i:25581123 original size:68 final size:68
Alignment explanation
Indices: 25581014--25581149 Score: 245
Period size: 68 Copynumber: 2.0 Consensus size: 68
25581004 TTCTTCGTTG
* * *
25581014 TTCATTGCGACGATTGTACGATTGTTGTGTAAGTTCTATCATTATTTCATTTCGTTTCTGTGAGT
1 TTCATTGCGACAATTGTACGATTGTTGTGTAAGCTCTATCATTATTTCATTCCGTTTCTGTGAGT
25581079 TTT
66 TTT
25581082 TTCATTGCGACAATTGTACGATTGTTGTGTAAGCTCTATCATTATTTCATTCCGTTTCTGTGAGT
1 TTCATTGCGACAATTGTACGATTGTTGTGTAAGCTCTATCATTATTTCATTCCGTTTCTGTGAGT
25581147 TTT
66 TTT
25581150 CATCTTGTTA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.18, C:0.15, G:0.18, T:0.49
Consensus pattern (68 bp):
TTCATTGCGACAATTGTACGATTGTTGTGTAAGCTCTATCATTATTTCATTCCGTTTCTGTGAGT
TTT
Found at i:25582110 original size:43 final size:43
Alignment explanation
Indices: 25582044--25582129 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
25582034 GAATTGTGAG
*
25582044 TATGTAAATGGATACAAAATATCATAACTGTTGATGACATTGA
1 TATGCAAATGGATACAAAATATCATAACTGTTGATGACATTGA
*
25582087 TATGCAAATGGATACAAAATATCATGACTGTTGATGACATTGA
1 TATGCAAATGGATACAAAATATCATAACTGTTGATGACATTGA
25582130 CCTGTACTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (43 bp):
TATGCAAATGGATACAAAATATCATAACTGTTGATGACATTGA
Found at i:25589006 original size:21 final size:21
Alignment explanation
Indices: 25588959--25589015 Score: 50
Period size: 21 Copynumber: 2.9 Consensus size: 21
25588949 AAATATTTCC
25588959 TATTAA-ATAT-TTA-T-AAA
1 TATTAATATATATTATTAAAA
* *
25588976 TTTTAGTATATATTATTAAAA
1 TATTAATATATATTATTAAAA
* *
25588997 TATTAATATAAAATATTAA
1 TATTAATATATATTATTAA
25589016 GTATATATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
17 4 0.13
18 4 0.13
19 3 0.10
20 1 0.03
21 18 0.60
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
TATTAATATATATTATTAAAA
Found at i:25589008 original size:13 final size:14
Alignment explanation
Indices: 25588992--25589020 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
25588982 TATATATTAT
25588992 TAAAATATTAA-TA
1 TAAAATATTAAGTA
25589005 TAAAATATTAAGTA
1 TAAAATATTAAGTA
25589019 TA
1 TA
25589021 TATTTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (14 bp):
TAAAATATTAAGTA
Found at i:25591762 original size:1 final size:1
Alignment explanation
Indices: 25591758--25591811 Score: 81
Period size: 1 Copynumber: 54.0 Consensus size: 1
25591748 TTTTTACATA
* * *
25591758 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCTATTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
25591812 ATATGATCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.04, C:0.02, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:25591780 original size:30 final size:30
Alignment explanation
Indices: 25591744--25591811 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
25591734 GGTTCATAAA
* *
25591744 TTTTTTTTTACATATTTTTTTTTTTTTTTT
1 TTTTTTTTTACATATTTCTATTTTTTTTTT
***
25591774 TTTTTTTTTTTTTATTTCTATTTTTTTTTT
1 TTTTTTTTTACATATTTCTATTTTTTTTTT
25591804 TTTTTTTT
1 TTTTTTTT
25591812 ATATGATCGG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.07, C:0.03, G:0.00, T:0.90
Consensus pattern (30 bp):
TTTTTTTTTACATATTTCTATTTTTTTTTT
Found at i:25606626 original size:15 final size:15
Alignment explanation
Indices: 25606602--25606631 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25606592 CTAATGTATT
25606602 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
25606617 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
25606632 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:25636754 original size:46 final size:44
Alignment explanation
Indices: 25636574--25636746 Score: 102
Period size: 46 Copynumber: 3.8 Consensus size: 44
25636564 TGTGTGTGCT
* * *
25636574 AGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGAAATGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCGACGA-GATG---TGTC
* * * * * * *
25636621 AGTGTAAGAGAAGTCTGGGAAATGCATCGAGATTGA-GACGA-GAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCG-G--CGACGA-GATGTGTC
* * * *
25636667 AGTGTGAGACATGTCTGGGATATGCATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCGACGAGATGTGTC
25636711 AGTGTAAGACCATGTCTAGGACATGGCATCGG-GACG
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCGACG
25636747 GATATGTGAG
Statistics
Matches: 97, Mismatches: 21, Indels: 18
0.71 0.15 0.13
Matches are distributed among these distances:
43 3 0.03
44 13 0.13
45 16 0.16
46 35 0.36
47 25 0.26
48 1 0.01
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCGACGAGATGTGTC
Done.