Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 84 of 333
Found at i:25988812 original size:23 final size:24
Alignment explanation
Indices: 25988752--25988814 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 24
25988742 GACTCACCAC
25988752 AGCTCATAT-GAGCTTACTAATTT
1 AGCTCATATGGAGCTTACTAATTT
* * *
25988775 AGCTCGTAAGG-GCTTACTATTTT
1 AGCTCATATGGAGCTTACTAATTT
25988798 AGCTCAT-TGGAGCTTAC
1 AGCTCATATGGAGCTTAC
25988815 CGATTCAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 2 0.06
23 30 0.91
24 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (24 bp):
AGCTCATATGGAGCTTACTAATTT
Found at i:25988854 original size:22 final size:23
Alignment explanation
Indices: 25988807--25988861 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
25988797 TAGCTCATTG
*
25988807 GAGCTTACCGATTCAATTCGAA-A
1 GAGCTTACCGATTCAACTC-AATA
*
25988830 GAGCTTACTG-TTCAACTCAATA
1 GAGCTTACCGATTCAACTCAATA
*
25988852 GAGATTACCG
1 GAGCTTACCG
25988862 TTTGTAGCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.07
22 16 0.59
23 9 0.33
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (23 bp):
GAGCTTACCGATTCAACTCAATA
Found at i:25991469 original size:131 final size:131
Alignment explanation
Indices: 25991235--25991498 Score: 501
Period size: 131 Copynumber: 2.0 Consensus size: 131
25991225 TGCTCAGAAG
25991235 ATCATTCAGATTACGCAGTGTTACTGTTAAGGAAGAAATTTACTTTAGTTAACTAAATTATTCAG
1 ATCATTCAGATTACGCAGTGTTACTGTTAAGGAAGAAATTTACTTTAGTTAACTAAATTATTCAG
25991300 GTATGATAATTAAAGAATGTATTACAAGAATTTCTTCTGAATTGATTTTCATTAATGGATGAGAT
66 GTATGATAATTAAAGAATGTATTACAAGAATTTCTTCTGAATTGATTTTCATTAATGGATGAGAT
25991365 A
131 A
*
25991366 ATCATTCAGATTATGCAGTGTTACTGTTAAGGAAGAAATTTACTTTAGTTAACTAAATTATTCAG
1 ATCATTCAGATTACGCAGTGTTACTGTTAAGGAAGAAATTTACTTTAGTTAACTAAATTATTCAG
* *
25991431 GTATGATAATTAAAGAATGTATTACCAGAATTTCTTCTGAATTGATTTTCGTTAATGGATGAGAT
66 GTATGATAATTAAAGAATGTATTACAAGAATTTCTTCTGAATTGATTTTCATTAATGGATGAGAT
25991496 A
131 A
25991497 AT
1 AT
25991499 GTGGGATTAG
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 130 1.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (131 bp):
ATCATTCAGATTACGCAGTGTTACTGTTAAGGAAGAAATTTACTTTAGTTAACTAAATTATTCAG
GTATGATAATTAAAGAATGTATTACAAGAATTTCTTCTGAATTGATTTTCATTAATGGATGAGAT
A
Found at i:25991911 original size:41 final size:41
Alignment explanation
Indices: 25991865--25991947 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
25991855 AAGATTATAT
25991865 TTCTTCTTTTACTATTGATTCCAGTGCATAAGAGTGATGCC
1 TTCTTCTTTTACTATTGATTCCAGTGCATAAGAGTGATGCC
25991906 TTCTTCTTTTACTATTGATTCCAGTGCATAAGAGTGATGCC
1 TTCTTCTTTTACTATTGATTCCAGTGCATAAGAGTGATGCC
25991947 T
1 T
25991948 CACTTCTGGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (41 bp):
TTCTTCTTTTACTATTGATTCCAGTGCATAAGAGTGATGCC
Found at i:25995415 original size:23 final size:23
Alignment explanation
Indices: 25995365--25995457 Score: 73
Period size: 23 Copynumber: 4.1 Consensus size: 23
25995355 GGACTCACCA
* *
25995365 CAGCTCGTATGAGCTTATTGATT
1 CAGCTCGTAAGAGCTTACTGATT
* *
25995388 CAGCTCGTAAGAGCTTGCTGTTT
1 CAGCTCGTAAGAGCTTACTGATT
* * ** *
25995411 TAGCTCATTGGAGATTATCT-ATT
1 CAGCTCGTAAGAGCTTA-CTGATT
*
25995434 CAGCTCGAAAGAGCTTACTG-TT
1 CAGCTCGTAAGAGCTTACTGATT
25995456 CA
1 CA
25995458 ACTCAATAAA
Statistics
Matches: 51, Mismatches: 17, Indels: 5
0.70 0.23 0.07
Matches are distributed among these distances:
22 6 0.12
23 43 0.84
24 2 0.04
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (23 bp):
CAGCTCGTAAGAGCTTACTGATT
Found at i:26000545 original size:52 final size:52
Alignment explanation
Indices: 26000482--26000597 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
26000472 GATATGACAT
*
26000482 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
26000534 TGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
26000586 TGTGCTAAGTGA
1 TGTGCTAAGTGA
26000598 GAAATTTCCC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:26000550 original size:28 final size:27
Alignment explanation
Indices: 26000482--26000597 Score: 154
Period size: 24 Copynumber: 4.4 Consensus size: 27
26000472 GATATGACAT
*
26000482 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
*
26000509 --T-CTAAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
26000534 TGTGCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
26000561 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
26000585 TTGTGCTAAGTGA
1 -TGTGCTAAGTGA
26000598 GAAATTTCCC
Statistics
Matches: 78, Mismatches: 3, Indels: 15
0.81 0.03 0.16
Matches are distributed among these distances:
24 43 0.55
25 3 0.04
27 3 0.04
28 29 0.37
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:26000675 original size:51 final size:51
Alignment explanation
Indices: 26000620--26000767 Score: 235
Period size: 51 Copynumber: 2.9 Consensus size: 51
26000610 TTGAACCTTA
26000620 GGAATAAAATAGCTTTAGACACAAGTGTGGTACTATGTGAAGGCCACTTTG
1 GGAATAAAATAGCTTTAGACACAAGTGTGGTACTATGTGAAGGCCACTTTG
* *
26000671 GGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTG
1 GGAATAAAATAGCTTTAGACACAAGTGTGGTACTATGTGAAGGCCACTTTG
* * *
26000722 TGAATAAAATAGCTTTTG-CTACAAGGGTGGTACTATGTGAAGGCCA
1 GGAATAAAATAGCTTTAGAC-ACAAGTGTGGTACTATGTGAAGGCCA
26000768 TCGTGTATCC
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 1 0.01
51 89 0.99
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (51 bp):
GGAATAAAATAGCTTTAGACACAAGTGTGGTACTATGTGAAGGCCACTTTG
Found at i:26007172 original size:43 final size:43
Alignment explanation
Indices: 26007118--26007254 Score: 211
Period size: 43 Copynumber: 3.2 Consensus size: 43
26007108 CAAATAGTAT
*
26007118 CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCTCAAAGG
1 CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGG
* *
26007161 CCCGGATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGG
1 CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGG
* * * *
26007204 CCCGAATACACATCACCGGCACAAAGCATGCTAGGCACGAAGA
1 CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGG
26007247 CCCGAATA
1 CCCGAATA
26007255 TAATACCAGC
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.32, C:0.34, G:0.23, T:0.10
Consensus pattern (43 bp):
CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGG
Found at i:26025238 original size:93 final size:93
Alignment explanation
Indices: 26025130--26025301 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
26025120 GCCCATAAGT
* * * *
26025130 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGGCTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26025195 CGAGCTCGAATGCCTAGTTACATCTCTC
66 CGAGCTCGAATGCCTAGTTACATCTCTC
* *
26025223 GAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
26025288 CGAGTTCGGATGCC
66 CGAGCTCGAATGCC
26025302 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGAATGCCTAGTTACATCTCTC
Found at i:26025297 original size:46 final size:46
Alignment explanation
Indices: 26025122--26025297 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
26025112 TGTAACCCGC
* **
26025122 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * * * *
26025168 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGAATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** * *
26025214 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
26025261 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
26025298 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 70 0.68
47 33 0.32
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:26027698 original size:15 final size:15
Alignment explanation
Indices: 26027631--26027710 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
26027621 CAAAGATAAC
*
26027631 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
26027645 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* * *
26027660 GAGAAACCCGGAATA
1 AAGAAATCCAGAATA
26027675 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
26027690 AATAGATCCAGGATA
1 AAGAAATCCAGAATA
26027705 AAGAAA
1 AAGAAA
26027711 CCCAAGATAC
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
14 9 0.18
15 41 0.80
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:26027719 original size:15 final size:15
Alignment explanation
Indices: 26027642--26027719 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
26027632 AGAAAACCGA
26027642 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
26027657 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
26027671 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* * *
26027686 AATAAATAGATCCAGG
1 -ATAAAGAAATCCAAG
*
26027702 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
26027717 ATA
1 ATA
26027720 CGATACTATG
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
14 3 0.06
15 42 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:26034384 original size:40 final size:40
Alignment explanation
Indices: 26034340--26034523 Score: 282
Period size: 40 Copynumber: 4.6 Consensus size: 40
26034330 TATTCGAATG
*
26034340 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
26034380 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
26034420 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
26034460 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
26034500 ATATCC-GACTAAATCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCA
26034524 CTTGGGTTTG
Statistics
Matches: 133, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 15 0.11
40 116 0.87
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:26042549 original size:40 final size:40
Alignment explanation
Indices: 26042494--26042677 Score: 257
Period size: 40 Copynumber: 4.6 Consensus size: 40
26042484 TATTCGAATG
26042494 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
26042534 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
26042574 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
26042614 ATATCCGGGCTAAGACCCGAAGGAATTTGTG-TGGGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT--ATTGACT
* *
26042654 ATATCC-AGCTAAATCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCA
26042678 CTTGGGTTTG
Statistics
Matches: 129, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.12
40 111 0.86
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:26045715 original size:41 final size:42
Alignment explanation
Indices: 26045653--26045760 Score: 130
Period size: 41 Copynumber: 2.6 Consensus size: 42
26045643 TTTATCAAAT
* * *
26045653 CACCAGCATTTAGCCTACTAGGTTTTAAACCTGA-ATTCA-TC
1 CACCAGCATTTAGCCTGCTAGGCTTGAAACCTGATA-TCATTC
* * *
26045694 CACCAGCATTTCGCCTGCTAGGCTTGAAGCCTGATATCATTT
1 CACCAGCATTTAGCCTGCTAGGCTTGAAACCTGATATCATTC
26045736 CACCAGCATTATAGCCTGCTAGGCT
1 CACCAGCATT-TAGCCTGCTAGGCT
26045761 CGAAGGCCCG
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 32 0.56
42 12 0.21
43 13 0.23
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.30
Consensus pattern (42 bp):
CACCAGCATTTAGCCTGCTAGGCTTGAAACCTGATATCATTC
Found at i:26045792 original size:45 final size:45
Alignment explanation
Indices: 26045735--26045867 Score: 221
Period size: 45 Copynumber: 3.0 Consensus size: 45
26045725 TGATATCATT
* *
26045735 TCACCAGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
26045780 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
26045825 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCTCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
26045868 CCGTACAATA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:26054592 original size:35 final size:35
Alignment explanation
Indices: 26054553--26054648 Score: 122
Period size: 35 Copynumber: 2.7 Consensus size: 35
26054543 AATCGACTCA
* * *
26054553 AAAAATGTTGGGATAGACCAT-TCTATGCCAACCAT
1 AAAAAGGTTGGGATAGACC-TGTCTAAGACAACCAT
* *
26054588 AAAAAGGTTGAGATAGACCTGTCTAAGACAACCTT
1 AAAAAGGTTGGGATAGACCTGTCTAAGACAACCAT
26054623 AAAAAGGTTGGGATAGACCTTGTCTA
1 AAAAAGGTTGGGATAGACC-TGTCTA
26054649 CATCAACACC
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
34 1 0.02
35 46 0.87
36 6 0.11
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (35 bp):
AAAAAGGTTGGGATAGACCTGTCTAAGACAACCAT
Found at i:26056185 original size:26 final size:26
Alignment explanation
Indices: 26056156--26056215 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
26056146 GGGTGTAATG
*
26056156 GTAATTTTGC-ACCTAGGGGTATATC-A
1 GTAATTTT-CAACATAGGGGTAT-TCAA
26056182 GTAATTTTCAGACATAGGGGTATTCAA
1 GTAATTTTCA-ACATAGGGGTATTCAA
26056209 GTAATTT
1 GTAATTT
26056216 AACTATTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.03
26 10 0.33
27 19 0.63
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.37
Consensus pattern (26 bp):
GTAATTTTCAACATAGGGGTATTCAA
Found at i:26056480 original size:8 final size:8
Alignment explanation
Indices: 26056454--26056483 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
26056444 CAAAATACCA
26056454 GCTTTTCG
1 GCTTTTCG
*
26056462 GCATTTCG
1 GCTTTTCG
26056470 GCTTTTCG
1 GCTTTTCG
26056478 GCTTTT
1 GCTTTT
26056484 GCCGATCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:26063403 original size:17 final size:17
Alignment explanation
Indices: 26063383--26063421 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
26063373 CTTTTATTAA
26063383 GTTTTTAAGATTCATTC
1 GTTTTTAAGATTCATTC
*
26063400 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTC
26063417 GTTTT
1 GTTTT
26063422 CCTTTTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.59
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:26068701 original size:16 final size:16
Alignment explanation
Indices: 26068680--26068719 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
26068670 AAGGAAAAAG
26068680 TAAATTAATAAATAAT
1 TAAATTAATAAATAAT
26068696 TAAATTAATAAATAAT
1 TAAATTAATAAATAAT
26068712 TAAATTAA
1 TAAATTAA
26068720 ATTAAATTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAATTAATAAATAAT
Found at i:26070892 original size:7 final size:6
Alignment explanation
Indices: 26070861--26070890 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
26070851 TTCAAACTAC
26070861 TTTTTA TTTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTT
26070891 TAGTAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (6 bp):
TTTTTA
Found at i:26074223 original size:140 final size:139
Alignment explanation
Indices: 26073970--26074337 Score: 461
Period size: 140 Copynumber: 2.6 Consensus size: 139
26073960 TCAACATGTG
* * * *
26073970 TATCCCAACCCTTATACAAATAGTTGGCCAAA-CTGTATATCCGCAAGTTTATCCCAAAATTTAG
1 TATCCCAACCCTTATACAAATAGTTGGCCAAAGC-GTATGTCCGCAAGTCTATCCCAACACTTAG
* * ***
26074034 GAAAACGTTAG-CCCAAAAGTGTCGGCATAGTGTTGGACAAAGCCAACTCTTATTTACGTGTTGC
65 G-AAA-GTTCGACCCAAAAGTGTCGACATAGTGTTGGACAAAGCCAACTCTTATTTAAACGTTGC
26074098 CTTAGGCATGCA
128 CTTAGGCATGCA
* * * * **
26074110 TATCCCTACCCTTATAAAAATAGTTGGACAAAGCATATGTAGGCAAGTCTATCCCAACACTTAGG
1 TATCCCAACCCTTATACAAATAGTTGGCCAAAGCGTATGTCCGCAAGTCTATCCCAACACTTAGG
* *
26074175 AAAGTATCGACCCAAAAGTGTCGACATAGTGTTGGACAAAGTCGACTCTTATTTAAACGTTGCCT
66 AAAGT-TCGACCCAAAAGTGTCGACATAGTGTTGGACAAAGCCAACTCTTATTTAAACGTTGCCT
26074240 TAGGCATGCA
130 TAGGCATGCA
* * * * *
26074250 TATCCCGACCCTTGTACAAAGAGTTAGCCAAAGCGTATGTCTGCAAGTCTATCCCAACACTTAGG
1 TATCCCAACCCTTATACAAATAGTTGGCCAAAGCGTATGTCCGCAAGTCTATCCCAACACTTAGG
**
26074315 AAAGTGTCGACAGAAAAGTGTCG
66 AAAGT-TCGACCCAAAAGTGTCG
26074338 TCTTAGGACT
Statistics
Matches: 196, Mismatches: 29, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
138 2 0.01
139 5 0.03
140 188 0.96
141 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (139 bp):
TATCCCAACCCTTATACAAATAGTTGGCCAAAGCGTATGTCCGCAAGTCTATCCCAACACTTAGG
AAAGTTCGACCCAAAAGTGTCGACATAGTGTTGGACAAAGCCAACTCTTATTTAAACGTTGCCTT
AGGCATGCA
Found at i:26076741 original size:46 final size:46
Alignment explanation
Indices: 26076672--26076804 Score: 171
Period size: 46 Copynumber: 2.9 Consensus size: 46
26076662 ATAATTTCAC
*
26076672 CCATAATGAACTCGGAATGCAACTCAACGAGCTCAGG-TG-TTCACAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGCTC-GGATGCTT-ACAT
* * * *
26076718 CCATAATGAACTCGAAACACAACTCAACGAGTTCGGATGCTTGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGATGCTTACAT
*
26076764 CCATAAGTGAACTCGGAACGCAACTCAACGAGTTCGGATGC
1 CCATAA-TGAACTCGGAACGCAACTCAACGAGCTCGGATGC
26076805 CTCATAATTC
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
45 2 0.03
46 41 0.53
47 34 0.44
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGATGCTTACAT
Found at i:26076793 original size:47 final size:47
Alignment explanation
Indices: 26076672--26076849 Score: 193
Period size: 47 Copynumber: 3.8 Consensus size: 47
26076662 ATAATTTCAC
* *
26076672 CCATAATGAACTCGGAATGCAACTCAACGAGCTCAGG-TG-TTCACAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTC-GGATGCTTCACAT
* * *
26076718 CCATAATGAACTCGAAACACAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
* *
26076764 CCATAAGTGAACTCGGAACGCAACTCAACGAGTTCGGATGCCTCATAAT
1 CCATAA-TGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCA-CAT
* * * **
26076813 TC-TCACGAACTCGGAACATAACTCAACGAGTTCGGAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGAT
26076850 CTCAATTTCC
Statistics
Matches: 112, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
45 2 0.02
46 41 0.37
47 64 0.57
48 2 0.02
49 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
Found at i:26092849 original size:19 final size:19
Alignment explanation
Indices: 26092827--26092865 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
26092817 TTCAAACATC
26092827 TCACAAAAGATCATAAGCA
1 TCACAAAAGATCATAAGCA
26092846 TCACAAAAGATCATAAGCA
1 TCACAAAAGATCATAAGCA
26092865 T
1 T
26092866 ATAGATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.21, G:0.10, T:0.18
Consensus pattern (19 bp):
TCACAAAAGATCATAAGCA
Found at i:26095024 original size:29 final size:31
Alignment explanation
Indices: 26094988--26095057 Score: 92
Period size: 29 Copynumber: 2.3 Consensus size: 31
26094978 CTGCCGTCCA
26094988 TTTTCCTTTTCTTC-T-CATGTCTATTTTTT-
1 TTTTCCTTTTCTTCTTGC-TGTCTATTTTTTC
*
26095017 TTTTCCTTTTCTTCTTGCTTTCTATTTTTTC
1 TTTTCCTTTTCTTCTTGCTGTCTATTTTTTC
*
26095048 TTTTCATTTT
1 TTTTCCTTTT
26095058 TGTTACAGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 14 0.39
30 12 0.33
31 10 0.28
ACGTcount: A:0.06, C:0.20, G:0.03, T:0.71
Consensus pattern (31 bp):
TTTTCCTTTTCTTCTTGCTGTCTATTTTTTC
Found at i:26096875 original size:10 final size:10
Alignment explanation
Indices: 26096862--26096893 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
26096852 TTTTTAGAAT
26096862 AATAACATAA
1 AATAACATAA
26096872 AATAACATAA
1 AATAACATAA
26096882 AATAA-ATAA
1 AATAACATAA
26096891 AAT
1 AAT
26096894 TCAAGAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 7 0.32
10 15 0.68
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (10 bp):
AATAACATAA
Found at i:26097948 original size:20 final size:21
Alignment explanation
Indices: 26097923--26097965 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
26097913 CACATTAGTG
26097923 AACAAATATAAATAT-AAATA
1 AACAAATATAAATATAAAATA
**
26097943 AACAAATATTTATATAAAATA
1 AACAAATATAAATATAAAATA
26097964 AA
1 AA
26097966 ATAAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (21 bp):
AACAAATATAAATATAAAATA
Found at i:26097978 original size:22 final size:20
Alignment explanation
Indices: 26097934--26097979 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
26097924 ACAAATATAA
*
26097934 ATATAAATAAACAAATATTT
1 ATATAAATAAACAAAAATTT
*
26097954 ATATAAAATAAAATAAAAATTT
1 ATAT-AAAT-AAACAAAAATTT
26097976 ATAT
1 ATAT
26097980 TTAAAATATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 4 0.18
22 14 0.64
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
ATATAAATAAACAAAAATTT
Found at i:26101502 original size:161 final size:158
Alignment explanation
Indices: 26101167--26101665 Score: 592
Period size: 161 Copynumber: 3.2 Consensus size: 158
26101157 GTTGAATAGT
* * * * *
26101167 AGGATTAAATC-CTGAAACATAATTATTTAATTAAATCTTATTTCGAAACAAAATCAAAATAAAA
1 AGGAATAAATCTC-GAAACAGAATTATTTGATTAAATCTTGTTTGGAAACAAAATCAAAATAAAA
* * *
26101231 TTTGTTAAATG-GCGGGAATAAATCCCGAAACAAAATTATTTGATTAAA---TCTTATTTGGAAA
65 TTTGTT-AA-GCGC-GGAATAAATCCC-AAAAAAAATTATTTAATTAAATCTTCTTGTTTGGAAA
*
26101292 CAAAGTCAAAAT---A-AAAA-TTGTTAAACGGC
126 -AAAATCAAAATCGAATAAAATTTGTTAAACGGC
* * * *
26101321 GGGAATAAATCTCAAAACAGAATTATTTGATTAAATCTTGTTTGGAAACAAAAACGAAATAAAAT
1 AGGAATAAATCTCGAAACAGAATTATTTGATTAAATCTTGTTTGGAAACAAAATCAAAATAAAAT
* * * *
26101386 ATGTTAAGCAGCTGAATAAATCCCAAAATAGAATTATTCAATTAAATCTTCTTGTTTGGAAATAA
66 TTGTTAAGC-GCGGAATAAATCCCAAAA-AAAATTATTTAATTAAATCTTCTTGTTTGGAAA-AA
*
26101451 AATCAAAATCGAATAAAATTTGTTAAACAGC
128 AATCAAAATCGAATAAAATTTGTTAAACGGC
*
26101482 AGGAATAAATCTCGAAACAGAATTATTTGATTCAATCTTGTTTGGAAACAAAATCAAAATAAAAT
1 AGGAATAAATCTCGAAACAGAATTATTTGATTAAATCTTGTTTGGAAACAAAATCAAAATAAAAT
*
26101547 TTGTTAAGCGTCGGAATAAATCCCGAAAAAAAATTATTTAATTAAATCTTCTCGTTTGG-AAAAA
66 TTGTTAAGCG-CGGAATAAATCCC-AAAAAAAATTATTTAATTAAATCTTCTTGTTTGGAAAAAA
* *
26101611 ATCAAAATCGAATAAAATCTT-CTAAATGGC
129 ATCAAAATCGAATAAAAT-TTGTTAAACGGC
*
26101641 AAGAATAAATCTCGAAACA-AATTAT
1 AGGAATAAATCTCGAAACAGAATTAT
26101666 ATTCAATTTT
Statistics
Matches: 297, Mismatches: 33, Indels: 26
0.83 0.09 0.07
Matches are distributed among these distances:
152 4 0.01
153 27 0.09
154 60 0.20
155 1 0.00
156 22 0.07
158 6 0.02
159 46 0.15
160 9 0.03
161 118 0.40
162 4 0.01
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (158 bp):
AGGAATAAATCTCGAAACAGAATTATTTGATTAAATCTTGTTTGGAAACAAAATCAAAATAAAAT
TTGTTAAGCGCGGAATAAATCCCAAAAAAAATTATTTAATTAAATCTTCTTGTTTGGAAAAAAAT
CAAAATCGAATAAAATTTGTTAAACGGC
Found at i:26101612 original size:77 final size:77
Alignment explanation
Indices: 26101135--26101618 Score: 435
Period size: 77 Copynumber: 6.2 Consensus size: 77
26101125 TTAAATTTCT
* * * * * * * * *
26101135 AAACAAAATTAAAAT-TAATTCTGTTGAATAGTAGGATTAAATCCTGAAACATAATTATTTAATT
1 AAACAAAATCAAAATAAAATT-TGTTAAACAGCAGGAATAAATCCCGAAAAAAAATTATTTAATT
* *
26101199 AAATCTTATTTCG
65 AAATCTTGTTTGG
** * * *
26101212 AAACAAAATCAAAATAAAATTTGTTAAATGGCGGGAATAAATCCCGAAACAAAATTATTTGATTA
1 AAACAAAATCAAAATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAAAAAAATTATTTAATTA
*
26101277 AATCTTATTTGG
66 AATCTTGTTTGG
* * * * * * *
26101289 AAACAAAGTCAAAATAAAAATTGTTAAACGGCGGGAATAAATCTC-AAAACAGAATTATTTGATT
1 AAACAAAATCAAAATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAAA-AAAATTATTTAATT
26101353 AAATCTTGTTTGG
65 AAATCTTGTTTGG
* * * * * * *
26101366 AAACAAAAACGAAATAAAATATGTTAAGCAGC-TGAATAAATCCC-AAAATAGAATTATTCAATT
1 AAACAAAATCAAAATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAAA-AAAATTATTTAATT
26101429 AAATCTTCTTGTTTGG
65 AAA---TCTTGTTTGG
* * * *
26101445 AAATAAAATCAAAATCGAATAAAATTTGTTAAACAGCAGGAATAAATCTCGAAACAGAATTATTT
1 AAACAAAATC--AA---AATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAAAAAAATTATTT
* *
26101510 GATTCAATCTTGTTTGG
61 AATTAAATCTTGTTTGG
*
26101527 AAACAAAATCAAAATAAAATTTGTTAAGC-GTC-GGAATAAATCCCGAAAAAAAATTATTTAATT
1 AAACAAAATCAAAATAAAATTTGTTAAACAG-CAGGAATAAATCCCGAAAAAAAATTATTTAATT
26101590 AAATCTTCTCGTTTGG
65 AAATC-T-T-GTTTGG
26101606 -AA-AAAATCAAAAT
1 AAACAAAATCAAAAT
26101619 CGAATAAAAT
Statistics
Matches: 343, Mismatches: 48, Indels: 32
0.81 0.11 0.08
Matches are distributed among these distances:
76 64 0.19
77 181 0.53
78 7 0.02
79 24 0.07
80 2 0.01
81 1 0.00
82 19 0.06
84 18 0.05
85 24 0.07
86 3 0.01
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (77 bp):
AAACAAAATCAAAATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAAAAAAATTATTTAATTA
AATCTTGTTTGG
Found at i:26101698 original size:238 final size:232
Alignment explanation
Indices: 26101172--26101699 Score: 541
Period size: 238 Copynumber: 2.2 Consensus size: 232
26101162 ATAGTAGGAT
** * * *
26101172 TAAATCCTGAAACATAATTATTTAATTAAATCT-T-ATTTCGAAACAAAATCAAAATAAAATTTG
1 TAAATCCCAAAACAGAATTATTCAATTAAATCTCTCATTTGGAAACAAAATCAAAATAAAATTTG
** * *
26101235 TTAAATGGCGGGAATAAATCCCGAAACAAAATTATTTGATTAAATCTTATTTGGAAACAAAGTCA
66 TTAAACAGCAGGAATAAATCCCGAAACAAAATTATTTGATTAAATCTTATTTGGAAACAAAATCA
* * *
26101300 AAATAAAAATTGTTAAACGGCGGGAATAAATCTCAAAACAGAATTATTTGATTAAATCTTGTTTG
131 AAATAAAAATTGTTAAACGGCGGGAATAAATCCCAAAACAAAATTATTTAATTAAATCTTGTTTG
* *
26101365 GAAACAAAAACGAAATAAAATATGTTAAGCAGCTGAA
196 GAAACAAAAACGAAATAAAATATGTTAAACAGCAGAA
* ** *
26101402 TAAATCCCAAAATAGAATTATTCAATTAAATCTTCTTGTTTGGAAATAAAATCAAAATCGAATAA
1 TAAATCCCAAAACAGAATTATTCAATTAAATC-TCTCATTTGGAAACAAAATC--AA---AATAA
* * * *
26101467 AATTTGTTAAACAGCAGGAATAAATCTCGAAACAGAATTATTTGATTCAATCTTGTTTGGAAACA
60 AATTTGTTAAACAGCAGGAATAAATCCCGAAACAAAATTATTTGATTAAATCTTATTTGGAAACA
* * *
26101532 AAATCAAAATAAAATTTGTTAAGCGTC-GGAATAAATCCCGAAAA-AAAATTATTTAATTAAATC
125 AAATCAAAATAAAAATTGTTAAACGGCGGGAATAAATCCC-AAAACAAAATTATTTAATTAAATC
* * **
26101595 TTCTCGTTTGGAAAAAATCAAAATCG-AATAAAATCT-TCTAAATGGCAAGAA
189 -T-T-GTTTGG---AAA-CAAAAACGAAATAAAATATGT-TAAACAGC-AGAA
* * *
26101646 TAAATCTCGAAACA-AATTATATTCAATTTTAATC-CTCATTTGGAAACAAAATCA
1 TAAATCCCAAAACAGAA-T-TATTCAA-TTAAATCTCTCATTTGGAAACAAAATCA
26101700 TAATGGAATA
Statistics
Matches: 242, Mismatches: 35, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
230 27 0.11
231 1 0.00
232 1 0.00
233 13 0.05
235 2 0.01
237 28 0.12
238 91 0.38
239 1 0.00
240 6 0.02
242 2 0.01
243 19 0.08
244 38 0.16
245 7 0.03
246 6 0.02
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.30
Consensus pattern (232 bp):
TAAATCCCAAAACAGAATTATTCAATTAAATCTCTCATTTGGAAACAAAATCAAAATAAAATTTG
TTAAACAGCAGGAATAAATCCCGAAACAAAATTATTTGATTAAATCTTATTTGGAAACAAAATCA
AAATAAAAATTGTTAAACGGCGGGAATAAATCCCAAAACAAAATTATTTAATTAAATCTTGTTTG
GAAACAAAAACGAAATAAAATATGTTAAACAGCAGAA
Found at i:26102631 original size:26 final size:26
Alignment explanation
Indices: 26102602--26102709 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
26102592 TGGTACAAAT
*
26102602 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26102628 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26102654 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26102680 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26102706 TGAT
1 TGAT
26102710 GGGAATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26109729 original size:26 final size:26
Alignment explanation
Indices: 26109700--26109807 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
26109690 TGGTACAAAT
26109700 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26109726 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26109752 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26109778 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26109804 TGAT
1 TGAT
26109808 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26112064 original size:39 final size:40
Alignment explanation
Indices: 26111969--26112191 Score: 239
Period size: 39 Copynumber: 5.7 Consensus size: 40
26111959 TTGAATGATG
* *
26111969 TCCGGCCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
26112007 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
26112048 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26112087 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26112126 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
26112165 AACCGGGCTATGTCTCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26112192 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 92 0.57
40 57 0.35
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:26112109 original size:78 final size:80
Alignment explanation
Indices: 26111975--26112191 Score: 241
Period size: 79 Copynumber: 2.8 Consensus size: 80
26111965 GATGTCCGGC
* * * * *
26111975 CTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCATTTGTGC
1 CTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGC
* *
26112037 GAGATACTAATTCCGGG
64 GAGATACTAAATCCAGG
*
26112054 CTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC
1 CTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGC
*
26112115 GAGTTACTAAATCCAGG
64 GAGATACTAAATCCAGG
* * *
26112132 TTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCTCGAAGGCATTTG
1 CTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
26112192 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 11, Indels: 17
0.81 0.08 0.12
Matches are distributed among these distances:
78 45 0.38
79 51 0.43
80 21 0.18
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
CTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGA
GATACTAAATCCAGG
Found at i:26112213 original size:79 final size:79
Alignment explanation
Indices: 26112021--26112224 Score: 195
Period size: 79 Copynumber: 2.6 Consensus size: 79
26112011 GGACTAAGAT
** * * *
26112021 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
*
26112084 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** *
26112099 CCGAAGGCATTTGTGCGAGTTACTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACT
*
26112163 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * * *
26112179 TCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCAGGTTAAGTCCCGAAGG
26112225 TACGTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 36 0.33
79 47 0.44
80 24 0.22
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:26117480 original size:20 final size:20
Alignment explanation
Indices: 26117436--26117480 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
26117426 CATATAAGTA
*
26117436 ATTTTATTATAAATTTTAGG
1 ATTTTATTATAAATTTTAAG
*
26117456 TTTTTCATT-TAAATTTTAAG
1 ATTTT-ATTATAAATTTTAAG
26117476 ATTTT
1 ATTTT
26117481 TCATAATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.31, C:0.02, G:0.07, T:0.60
Consensus pattern (20 bp):
ATTTTATTATAAATTTTAAG
Found at i:26117482 original size:21 final size:21
Alignment explanation
Indices: 26117437--26117490 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
26117427 ATATAAGTAA
*
26117437 TTTT-ATTATAAATTTTAGGT
1 TTTTCATTATAAATTTTAGAT
26117457 TTTTCATT-TAAATTTTAAGAT
1 TTTTCATTATAAATTTT-AGAT
*
26117478 TTTTCATAATAAA
1 TTTTCATTATAAA
26117491 AATATTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 12 0.41
21 13 0.45
22 4 0.14
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (21 bp):
TTTTCATTATAAATTTTAGAT
Found at i:26117943 original size:70 final size:70
Alignment explanation
Indices: 26117828--26117971 Score: 270
Period size: 70 Copynumber: 2.1 Consensus size: 70
26117818 TTTAATTAAA
*
26117828 AATACATGGGAGGAAAGTGGTTAACTATGTGTTAATTAACGAGATAATTTCTATATAAATCAATG
1 AATACATGGGAGGAAAGTGGTTAACTATGTGTTAATTAACCAGATAATTTCTATATAAATCAATG
26117893 GTTCT
66 GTTCT
*
26117898 AATACATGGGAGGAAAGTGGTTAATTATGTGTTAATTAACCAGATAATTTCTATATAAATCAATG
1 AATACATGGGAGGAAAGTGGTTAACTATGTGTTAATTAACCAGATAATTTCTATATAAATCAATG
26117963 GTTCT
66 GTTCT
26117968 AATA
1 AATA
26117972 GCCCTTTTCA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (70 bp):
AATACATGGGAGGAAAGTGGTTAACTATGTGTTAATTAACCAGATAATTTCTATATAAATCAATG
GTTCT
Found at i:26118940 original size:44 final size:43
Alignment explanation
Indices: 26118891--26119005 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 43
26118881 GCAAAATTTT
* * *
26118891 GCGGCGTTTATTTTAAAAAATGCCGCTAAAGACCATGACCTTTA
1 GCGGCGCTT-TTTTAAAAAACGCCGCTAAAAACCATGACCTTTA
* *
26118935 GCGGCGCTTTTTTCACAAACGCCGCTAAAAACCATGACC-TTA
1 GCGGCGCTTTTTTAAAAAACGCCGCTAAAAACCATGACCTTTA
** * * *
26118977 ATGGCGCTTTTCTCACAAACGCCGCTAAA
1 GCGGCGCTTTTTTAAAAAACGCCGCTAAA
26119006 GAATATAACC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 29 0.46
43 26 0.41
44 8 0.13
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
GCGGCGCTTTTTTAAAAAACGCCGCTAAAAACCATGACCTTTA
Found at i:26118960 original size:43 final size:42
Alignment explanation
Indices: 26118912--26119007 Score: 147
Period size: 42 Copynumber: 2.3 Consensus size: 42
26118902 TTTAAAAAAT
* *
26118912 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
1 GCCGCTAAAGACCATGACC-TTAACGGCGCTTTTCTCACAAAC
* *
26118955 GCCGCTAAAAACCATGACCTTAATGGCGCTTTTCTCACAAAC
1 GCCGCTAAAGACCATGACCTTAACGGCGCTTTTCTCACAAAC
26118997 GCCGCTAAAGA
1 GCCGCTAAAGA
26119008 ATATAACCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 30 0.62
43 18 0.38
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (42 bp):
GCCGCTAAAGACCATGACCTTAACGGCGCTTTTCTCACAAAC
Found at i:26119658 original size:24 final size:24
Alignment explanation
Indices: 26119630--26119676 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26119620 CTTCAACACC
26119630 TGCCTCTTCCTATGTTTCCCTTAT
1 TGCCTCTTCCTATGTTTCCCTTAT
* *
26119654 TGCCTTTTCCTATGTTTCTCTTA
1 TGCCTCTTCCTATGTTTCCCTTA
26119677 CTAAGTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.09, C:0.30, G:0.09, T:0.53
Consensus pattern (24 bp):
TGCCTCTTCCTATGTTTCCCTTAT
Found at i:26123036 original size:20 final size:19
Alignment explanation
Indices: 26122998--26123038 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
26122988 TTTCCAACAA
* *
26122998 TAAACCCTAAACCTAAACC
1 TAAACCCCAAACATAAACC
26123017 TAAACCCCAAACTATAAACC
1 TAAACCCCAAAC-ATAAACC
26123037 TA
1 TA
26123039 TATCCTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (19 bp):
TAAACCCCAAACATAAACC
Found at i:26123248 original size:14 final size:14
Alignment explanation
Indices: 26123229--26123260 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26123219 AAAAAAACAC
*
26123229 AAACTCTAAACCAT
1 AAACTCTAAACCAA
26123243 AAACTCTAAACCAA
1 AAACTCTAAACCAA
26123257 AAAC
1 AAAC
26123261 AATAAACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.16
Consensus pattern (14 bp):
AAACTCTAAACCAA
Found at i:26124027 original size:41 final size:41
Alignment explanation
Indices: 26123982--26124119 Score: 222
Period size: 41 Copynumber: 3.4 Consensus size: 41
26123972 CCAAAAGAGC
* * * *
26123982 TTTTCTAAAAGCGCCGCTAAAACCTCGATCTATAGCAGCAT
1 TTTTCCAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGT
26124023 TTTTCCAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGT
1 TTTTCCAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGT
* *
26124064 TTTTCCAAAAGCGCCTCTAAAACCTTGACCTATAGCGGCGT
1 TTTTCCAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGT
26124105 TTTTCCAAAAGCGCC
1 TTTTCCAAAAGCGCC
26124120 ACTATTGTTC
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 91 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (41 bp):
TTTTCCAAAAGCGCCGCTAAAACCTCGACCTATAGCGGCGT
Found at i:26124154 original size:41 final size:41
Alignment explanation
Indices: 26124096--26124228 Score: 142
Period size: 41 Copynumber: 3.3 Consensus size: 41
26124086 CCTTGACCTA
** * *
26124096 TAGCGGCGTTT-TTCCAAAAGCGCCACTATTGTTCAGTTTT
1 TAGCGGCGTTTGGACCAAAAACGCCACTATTGCTCAGTTTT
*
26124136 TAGCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTT
1 TAGCGGCGTTTGGACCAAAAACGCCACTATTGCTCAGTTTT
* ** * ** *
26124177 TAGTGGCGTTTGGATAAAAAATGCTGCTATTACTCAGTTTT
1 TAGCGGCGTTTGGACCAAAAACGCCACTATTGCTCAGTTTT
*
26124218 TTGCGGCGTTT
1 TAGCGGCGTTT
26124229 TATTGCAAAC
Statistics
Matches: 79, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 11 0.14
41 68 0.86
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (41 bp):
TAGCGGCGTTTGGACCAAAAACGCCACTATTGCTCAGTTTT
Found at i:26125215 original size:21 final size:20
Alignment explanation
Indices: 26125168--26125224 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
26125158 ATTCTTATAA
*
26125168 TTTTTAATTTTTTATA-TTT
1 TTTTTAAATTTTTATATTTT
* *
26125187 TATATAAATTTTTATATTTT
1 TTTTTAAATTTTTATATTTT
*
26125207 TCTTTTAAAATTTTATAT
1 T-TTTTAAATTTTTATAT
26125225 ATTTATATTC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTAAATTTTTATATTTT
Found at i:26126989 original size:13 final size:13
Alignment explanation
Indices: 26126959--26126997 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
26126949 TTTACTCTTG
* *
26126959 ATTTTACAAAAAG
1 ATTTTACTAAAAT
*
26126972 GTTTTACTAAAAT
1 ATTTTACTAAAAT
26126985 ATTTTACTAAAAT
1 ATTTTACTAAAAT
26126998 TACGATTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (13 bp):
ATTTTACTAAAAT
Found at i:26130301 original size:43 final size:42
Alignment explanation
Indices: 26130219--26130372 Score: 143
Period size: 42 Copynumber: 3.6 Consensus size: 42
26130209 TAAGATGCCA
* *
26130219 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCG
1 ATGCCATAGCCCAGATATGGTCTTACAAGGGATCACATATCG
* * *
26130261 ATGCCGATAGCCCAGCTATGGTCTTACAAGATG-TCTCATATCG
1 ATGCC-ATAGCCCAGATATGGTCTTACAAG-GGATCACATATCG
* * * **
26130304 ATGCCAT-GTCCTAGACATGGACTTACACA-AAATCACATATCG
1 ATGCCATAG-CCCAGATATGGTCTTACA-AGGGATCACATATCG
* *
26130346 ATGCCATATCCTAGATATGGTCTTACA
1 ATGCCATAGCCCAGATATGGTCTTACA
26130373 CGAAATCACA
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 53 0.58
43 36 0.40
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACAAGGGATCACATATCG
Found at i:26130343 original size:42 final size:42
Alignment explanation
Indices: 26130297--26130382 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
26130287 CAAGATGTCT
*
26130297 CATATCGATGCCATGTCCTAGACATGGACTTACACAAAATCA
1 CATATCGATGCCATATCCTAGACATGGACTTACACAAAATCA
* * *
26130339 CATATCGATGCCATATCCTAGATATGGTCTTACACGAAATCA
1 CATATCGATGCCATATCCTAGACATGGACTTACACAAAATCA
26130381 CA
1 CA
26130383 CATAACCCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.26
Consensus pattern (42 bp):
CATATCGATGCCATATCCTAGACATGGACTTACACAAAATCA
Found at i:26132908 original size:34 final size:34
Alignment explanation
Indices: 26132870--26132937 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
26132860 TAAGCATGAC
**
26132870 TTTTGCTA-CAGAATTGATCTATTATAAGCATATT
1 TTTTGCTATCA-AATTGAAATATTATAAGCATATT
* *
26132904 TTTTGCTATTATATTGAAATATTATAAGCATATT
1 TTTTGCTATCAAATTGAAATATTATAAGCATATT
26132938 GATTTTCATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.34, C:0.09, G:0.10, T:0.47
Consensus pattern (34 bp):
TTTTGCTATCAAATTGAAATATTATAAGCATATT
Found at i:26132961 original size:34 final size:34
Alignment explanation
Indices: 26132889--26132953 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
26132879 AGAATTGATC
26132889 TATTATAAGCATATTTTTTGCTATTATATTGAAA
1 TATTATAAGCATATTTTTTGCTATTATATTGAAA
26132923 TATTATAAGCATATTGATTTT-C-ATTATATTG
1 TATTATAAGCATATT--TTTTGCTATTATATTG
26132954 TTTTATTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 24 0.83
35 1 0.03
36 4 0.14
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (34 bp):
TATTATAAGCATATTTTTTGCTATTATATTGAAA
Found at i:26133730 original size:17 final size:16
Alignment explanation
Indices: 26133705--26133747 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
26133695 TTTTAGGATC
* *
26133705 ATTAATTTGTTATTTT
1 ATTATTTTGTTATTGT
*
26133721 ATTTATTTTGATATTGT
1 A-TTATTTTGTTATTGT
26133738 ATTATTTTGT
1 ATTATTTTGT
26133748 GTTGAATTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.67
Consensus pattern (16 bp):
ATTATTTTGTTATTGT
Found at i:26135588 original size:63 final size:63
Alignment explanation
Indices: 26135499--26135630 Score: 174
Period size: 63 Copynumber: 2.1 Consensus size: 63
26135489 GTCTTGCCCA
* * * * * * * *
26135499 TGTGTCTCTATTAGGAACTCAGTGAGTTACACGGCCTGAACACATGCTCGTGTGTCTCACCTG
1 TGTGACTCTAATAGGAACTCAATGAGTTACACGACCTAAACACACGCCCGTGTGTCTCACCCG
* *
26135562 TGTGACTCTAATATGAACTCAATGAGTTACATGACCTAAACACACGCCCGTGTGTCTCACCCG
1 TGTGACTCTAATAGGAACTCAATGAGTTACACGACCTAAACACACGCCCGTGTGTCTCACCCG
26135625 TGTGAC
1 TGTGAC
26135631 CTGTACATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (63 bp):
TGTGACTCTAATAGGAACTCAATGAGTTACACGACCTAAACACACGCCCGTGTGTCTCACCCG
Found at i:26139181 original size:5 final size:5
Alignment explanation
Indices: 26139166--26139288 Score: 53
Period size: 5 Copynumber: 24.8 Consensus size: 5
26139156 ATGAAGTTGA
* * *
26139166 AAAAG -AAAG AAAAG AAAAT AAAAT AGAA- AAAAG AAATGAG AAAA- AGAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA--AG AAAAG A-AAAG
* * * * ** *
26139216 CAAA- AATAG AAAA- AGAAAG AAAAG AGAAT ACGAG AGAAA- AAAA- ACAAG
1 AAAAG AAAAG AAAAG A-AAAG AAAAG AAAAG AAAAG A-AAAG AAAAG AAAAG
26139264 AAAAG AAAAG AAAATG AAAAG AAAA
1 AAAAG AAAAG AAAA-G AAAAG AAAA
26139289 ATTTGATTGC
Statistics
Matches: 90, Mismatches: 16, Indels: 24
0.69 0.12 0.18
Matches are distributed among these distances:
4 17 0.19
5 61 0.68
6 7 0.08
7 5 0.06
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (5 bp):
AAAAG
Found at i:26139228 original size:19 final size:19
Alignment explanation
Indices: 26139164--26139238 Score: 71
Period size: 21 Copynumber: 3.8 Consensus size: 19
26139154 GAATGAAGTT
**
26139164 GAAAAAGAAAGAAAAGAAAA
1 GAAAAAGAAAGAAAA-ATGA
* *
26139184 TAAAATAGAAAAAAGAAATGA
1 GAAAA-AGAAAGAA-AAATGA
26139205 GAAAAAGAAAGCAAAAAT-A
1 GAAAAAGAAAG-AAAAATGA
26139224 GAAAAAGAAAGAAAA
1 GAAAAAGAAAGAAAA
26139239 GAGAATACGA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
18 4 0.09
19 12 0.26
20 13 0.28
21 15 0.33
22 2 0.04
ACGTcount: A:0.76, C:0.01, G:0.17, T:0.05
Consensus pattern (19 bp):
GAAAAAGAAAGAAAAATGA
Found at i:26139287 original size:60 final size:59
Alignment explanation
Indices: 26139164--26139289 Score: 132
Period size: 60 Copynumber: 2.1 Consensus size: 59
26139154 GAATGAAGTT
* * *
26139164 GAAAAAGAAAGAAAAGAAAATAAAATAGAAAAAAGAAATGAGAAAAAGAAAGCAAAAATA
1 GAAAAAGAAAGAAAAGAAAATAAAAGAGAAAAAAGAAA-GAGAAAAAGAAAGAAAAAAAA
* **
26139224 GAAAAAGAAAGAAAAGAGAATACGAGAGAAAAAA-AACA-AG-AAAAGAAAAGAAAATGAAAA
1 GAAAAAGAAAGAAAAGAAAATAAAAGAGAAAAAAGAA-AGAGAAAAAG-AAAGAAAA--AAAA
26139284 GAAAAA
1 GAAAAA
26139290 TTTGATTGCA
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
57 5 0.09
58 9 0.16
59 2 0.04
60 40 0.71
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (59 bp):
GAAAAAGAAAGAAAAGAAAATAAAAGAGAAAAAAGAAAGAGAAAAAGAAAGAAAAAAAA
Found at i:26142320 original size:19 final size:20
Alignment explanation
Indices: 26142279--26142321 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
26142269 AACTCTATCC
*
26142279 AGCTCAATTCAGCTTATTTG
1 AGCTCAATTCAGCTTAGTTG
*
26142299 AGCTTAATTCAGCTT-GTTG
1 AGCTCAATTCAGCTTAGTTG
26142318 AGCT
1 AGCT
26142322 AGATATAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (20 bp):
AGCTCAATTCAGCTTAGTTG
Found at i:26142615 original size:17 final size:18
Alignment explanation
Indices: 26142593--26142630 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26142583 CCTACAGCCG
26142593 AATTTA-TG-TTGTGTCTT
1 AATTTATTGTTTGTGT-TT
26142610 AATTTATTGTTTGTGTTT
1 AATTTATTGTTTGTGTTT
26142628 AAT
1 AAT
26142631 ATGTCTTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 7 0.37
19 6 0.32
ACGTcount: A:0.21, C:0.03, G:0.16, T:0.61
Consensus pattern (18 bp):
AATTTATTGTTTGTGTTT
Found at i:26144432 original size:15 final size:16
Alignment explanation
Indices: 26144412--26144449 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
26144402 AATTGGAAAG
26144412 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
*
26144427 ATGAAAATTTAATTAA
1 ATGAAAAGTTAATTAA
26144443 ATGAAAA
1 ATGAAAA
26144450 AGAAAACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:26149790 original size:79 final size:80
Alignment explanation
Indices: 26149646--26149863 Score: 227
Period size: 79 Copynumber: 2.8 Consensus size: 80
26149636 GAATCACGTA
** * *
26149646 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTT-GTTCAAAGGCCTTCGGGACATAGCCCGG-TT
1 CCTTCGG-ATCTTAACCCGGATATAG-TAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAAT
26149706 ATAGTAACTCGCACAAATG
63 -TAGTAACTCGCACAAATG
* * * *
26149725 CCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCTCGGAATT
1 CCTTC-GGATCTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATT
26149787 AGTAACTCGCACAAATG
64 AGTAACTCGCACAAATG
** *
26149804 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
26149864 CATCATTCGA
Statistics
Matches: 115, Mismatches: 14, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
78 3 0.03
79 71 0.62
80 38 0.33
81 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAG
TAACTCGCACAAATG
Found at i:26149863 original size:40 final size:40
Alignment explanation
Indices: 26149679--26149863 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
26149669 GCTACTTGTT
* * *
26149679 CAAAGGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
26149719 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
26149759 CCAATGCCTTCGGG-CTTAGCTCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
26149798 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
26149839 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26149864 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:26155495 original size:39 final size:39
Alignment explanation
Indices: 26155452--26155661 Score: 316
Period size: 39 Copynumber: 5.3 Consensus size: 39
26155442 GGACTAAGAT
26155452 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
26155491 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
*
26155530 CCGAAGGCATTTGTCCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
26155569 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* *
26155609 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
26155649 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26155662 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 112 0.71
40 46 0.29
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:26155675 original size:40 final size:39
Alignment explanation
Indices: 26155403--26155661 Score: 241
Period size: 39 Copynumber: 6.6 Consensus size: 39
26155393 AATGATGTCT
* * *
26155403 GGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACC
* *
26155442 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-ACC
*
26155482 GGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-ACC
* *
26155521 GGGCTAAG-CCCGAAGGCATTTGTCCGAGATACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-ACC
26155560 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA-CC
* *
26155599 GGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAACC
*
26155639 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
26155662 AACGAGGAGC
Statistics
Matches: 198, Mismatches: 12, Indels: 19
0.86 0.05 0.08
Matches are distributed among these distances:
39 126 0.64
40 62 0.31
41 10 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACC
Found at i:26163511 original size:39 final size:40
Alignment explanation
Indices: 26163416--26163677 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
26163406 TTGAATGATG
*
26163416 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
26163454 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
26163495 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
26163534 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26163573 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
26163612 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
26163651 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26163678 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:26169029 original size:40 final size:40
Alignment explanation
Indices: 26168980--26169163 Score: 182
Period size: 40 Copynumber: 4.6 Consensus size: 40
26168970 GCTACTCGTT
* *
26168980 CAAAGGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
26169020 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACA
* * * *
26169060 CCAATGCCTTCGGG-CTTAGCTCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCACA
* * *
26169099 CAAATGCCTTC-GGATCTTAGTCC-GTATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGT-TATAGTAACTCA-CA
26169140 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
26169164 ACATCATTTG
Statistics
Matches: 118, Mismatches: 16, Indels: 19
0.77 0.10 0.12
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 72 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:26169148 original size:79 final size:80
Alignment explanation
Indices: 26168980--26169164 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
26168970 GCTACTCGTT
* *
26168980 CAAAGGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTCGGGACTTAACCCG
* *
26169044 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * * ** *
26169061 CAATGCCTTCGGG-CTTAGCTCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGT
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
*
26169124 ATATAGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
26169140 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
26169165 CATCATTTGA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 24 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:26175029 original size:68 final size:66
Alignment explanation
Indices: 26174840--26175038 Score: 192
Period size: 68 Copynumber: 3.0 Consensus size: 66
26174830 CTAGCCAATT
* * * *
26174840 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACATGGAACCATACATGCGACCTAGCT--A
1 TATCTCGTAGCTCTCTTGTCTACATGATG---TACACATAGCACCATACATGCGACCTAGCTACA
26174903 TATA
63 TATA
* * *
26174907 TATCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCA-ACCATGCGACCTAGCTACATC
1 TATCTCGTAGCTCTCTTGTCTACATGATGTACACATAGCACCATA-CATGCGACCTAGCTACAT-
26174971 ATAA
64 AT-A
* * * *
26174975 TTTCTTGTAGCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACAT
1 TATCTCGTAGCTCTCTTGT-CTACATGATGTACACAT-AGCACCATACATGCGACCTAGCTACAT
26175038 A
64 A
26175039 CTATCTGTAT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
63 1 0.01
64 24 0.21
66 2 0.02
67 33 0.29
68 51 0.45
69 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.32
Consensus pattern (66 bp):
TATCTCGTAGCTCTCTTGTCTACATGATGTACACATAGCACCATACATGCGACCTAGCTACATAT
A
Found at i:26179917 original size:79 final size:79
Alignment explanation
Indices: 26179775--26179991 Score: 339
Period size: 79 Copynumber: 2.7 Consensus size: 79
26179765 GAGTTGCTAT
* * * *
26179775 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTAG-TTATATCCGGGCTAAGTCCCGAAGGCAT
26179839 TTATGCTAGTGACCAC
64 TTATGCTAGTGACCAC
26179855 ATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCGAAGGCATTT
1 ATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCGAAGGCATTT
26179920 ATGCTAGTGACCAC
66 ATGCTAGTGACCAC
* * *
26179934 ATCCGGGCTCAGACCCGAAGGCCTTGCGCAAGTAGTTATATCC-GGCTAAATCCCGAAG
1 ATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCGAAG
26179992 ATTACTTGAG
Statistics
Matches: 129, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
78 14 0.11
79 92 0.71
80 23 0.18
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (79 bp):
ATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCGAAGGCATTT
ATGCTAGTGACCAC
Found at i:26179925 original size:119 final size:121
Alignment explanation
Indices: 26179692--26179955 Score: 352
Period size: 119 Copynumber: 2.2 Consensus size: 121
26179682 TATTCGAATG
* * * * *
26179692 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAGGTGACTACAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGGTGACCACAACCGGACTAAGACCCGAAGGC
* * * *
26179757 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
66 ATTCGTGCAAGTAGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
* *
26179813 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTA-GTGACCACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGGTGACCACAACCGGACTAAGACCCGAAGGC
* * * *
26179877 CTT-GTGCAAGTAGTTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
66 ATTCGTGCAAGTAGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
* * *
26179932 ACATCCGGGCTCAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
26179956 CTTGCGCAAG
Statistics
Matches: 125, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
119 66 0.53
120 28 0.22
121 31 0.25
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (121 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGGTGACCACAACCGGACTAAGACCCGAAGGC
ATTCGTGCAAGTAGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
Found at i:26179951 original size:40 final size:40
Alignment explanation
Indices: 26179694--26179955 Score: 278
Period size: 40 Copynumber: 6.5 Consensus size: 40
26179684 TTCGAATGAT
* * *
26179694 ATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAGGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACTAC
* * * * * *
26179735 AACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACTAC
* *
26179775 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTAC
* * *
26179815 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTAC
* * * *
26179855 ATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGT-AGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGA-CTAC
* * *
26179894 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTAC
*
26179934 ATCCGGGCTCAGACCCGAAGGC
1 ATCCGGGCTAAGACCCGAAGGC
26179956 CTTGCGCAAG
Statistics
Matches: 180, Mismatches: 36, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 31 0.17
40 121 0.67
41 27 0.15
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTAC
Found at i:26186795 original size:17 final size:17
Alignment explanation
Indices: 26186773--26186807 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
26186763 AATAATTAAC
26186773 TAAATTAGAAATTAAAT
1 TAAATTAGAAATTAAAT
*
26186790 TAAATTGGAAATTAAAT
1 TAAATTAGAAATTAAAT
26186807 T
1 T
26186808 CAGATTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (17 bp):
TAAATTAGAAATTAAAT
Found at i:26189346 original size:27 final size:27
Alignment explanation
Indices: 26189316--26189805 Score: 549
Period size: 27 Copynumber: 18.2 Consensus size: 27
26189306 AAAGTACTCC
26189316 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
26189343 CGATTTTA-A-AATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
26189369 CGACTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26189396 CGATTTGTCA-AATTACCGTTTTACCCT
1 CGATTT-ACAGAATTACCGTTTTACCCT
* *
26189423 TGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
26189450 TAATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * **
26189477 CGATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26189504 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
26189531 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
26189558 CGATTTATAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * **
26189585 CGATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
26189612 CAATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
26189639 CAATTTACAGAATTACTGTTTTACCGT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
26189666 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
26189693 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
26189720 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26189747 C-AGTTTACAGAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
26189774 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26189801 TGATT
1 CGATT
26189806 GTGAAATTAC
Statistics
Matches: 399, Mismatches: 55, Indels: 18
0.85 0.12 0.04
Matches are distributed among these distances:
25 3 0.01
26 22 0.06
27 366 0.92
28 8 0.02
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:26189505 original size:108 final size:107
Alignment explanation
Indices: 26189318--26189816 Score: 628
Period size: 108 Copynumber: 4.6 Consensus size: 107
26189308 AGTACTCCCG
** * ** *
26189318 ATTTACAGAATTACCGTTTTACCCTCGATTTTA-A-AATTACTATTTTACCCTCGACTTACAGAA
1 ATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACCGTTTTACCCTCGATTTGTAAAA
** * *
26189381 TTACCGTTTTACCCTCGATTTGTCA-AATTACCGTTTTACCCTTG
65 TTACTATTTTACCCTCGATTT-ACAGAATTACCGTTTTACCC-TC
* **
26189425 ATTTATAGAATTACCGTTTTACCCTTAATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAAT
1 ATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAAT
*
26189490 TACTATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTC
66 TACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
** * *
26189532 AGTTTACAGAATTATTGTTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTGTAAAA
1 A-TTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAA
* **
26189597 TTACTATTTTACCCTCAATTTACAGAATTACTATTTTACCCTC
65 TTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
* * * *
26189640 AATTTACAGAATTACTGTTTTACCGTCGATTTATAGAATTACTGTTTTACCCTCGATTTGTAAAA
1 -ATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAA
* * * *
26189705 TTACTGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTC
65 TTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
* * *
26189748 AGTTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGA-TTGTGAAA
1 A-TTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAA
26189812 TTACT
65 TTACT
26189817 GAAATACCCC
Statistics
Matches: 346, Mismatches: 40, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
106 4 0.01
107 43 0.12
108 298 0.86
109 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.42
Consensus pattern (107 bp):
ATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAAT
TACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
Found at i:26189840 original size:27 final size:27
Alignment explanation
Indices: 26189810--26190005 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
26189800 TTGATTGTGA
*
26189810 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26189837 AATTTCCAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26189864 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26189891 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26189918 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26189945 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
26189972 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26189999 AATTACC
1 AATTACC
26190006 ATTTTTCCCC
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26189878 original size:54 final size:54
Alignment explanation
Indices: 26189810--26190006 Score: 279
Period size: 54 Copynumber: 3.6 Consensus size: 54
26189800 TTGATTGTGA
* * * *
26189810 AATTACTGAAATACCCCTGTAGGGTAGAATTTCCAAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* *
26189864 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* *
26189918 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * *
26189972 AATTACCGAGATACCCTTGTAGGGTAAAATTACCA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCA
26190007 TTTTTCCCCT
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 125 0.99
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.25
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:26190242 original size:27 final size:26
Alignment explanation
Indices: 26190204--26190286 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
26190194 CGGAGGAAGC
*
26190204 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
26190231 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
26190257 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
26190284 GTT
1 GTT
26190287 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:26190406 original size:22 final size:22
Alignment explanation
Indices: 26190374--26190432 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
26190364 CCCGTTATTA
*
26190374 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
26190396 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
26190418 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
26190433 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:26190619 original size:27 final size:27
Alignment explanation
Indices: 26190597--26190670 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
26190587 TAGGTGGGTT
*
26190597 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
26190624 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
26190651 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
26190671 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:26190797 original size:6 final size:6
Alignment explanation
Indices: 26190788--26190986 Score: 178
Period size: 6 Copynumber: 32.8 Consensus size: 6
26190778 TTGCATTTAC
* *
26190788 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
26190837 ATTCTG -TTACT- ACTACTG ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG
1 ATTCTG ATT-CTG A-TTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG
* *
26190886 ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
26190934 -TTACTA ATACTG ACTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
26190982 ATTCT
1 ATTCT
26190987 CATTTTGGTT
Statistics
Matches: 157, Mismatches: 20, Indels: 32
0.75 0.10 0.15
Matches are distributed among these distances:
5 10 0.06
6 135 0.86
7 10 0.06
8 2 0.01
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:26190858 original size:30 final size:30
Alignment explanation
Indices: 26190822--26190986 Score: 267
Period size: 30 Copynumber: 5.5 Consensus size: 30
26190812 AATTCTGATT
*
26190822 CTGATTCTGATTCTGATTCTGTTACTACTA
1 CTGATTCTGATTCTGATTCTGTTACTAATA
* *
26190852 CTGATTCTGATTCTGATTCTGTCACGTAATT
1 CTGATTCTGATTCTGATTCTGTTAC-TAATA
26190883 CTGATTCTGATTCTGATTCTGTTACTAATA
1 CTGATTCTGATTCTGATTCTGTTACTAATA
26190913 CTGATTCTGATTCTGATTCTGTTACTAATA
1 CTGATTCTGATTCTGATTCTGTTACTAATA
* * *
26190943 CTGACTCTGATTCTGATTCTGTTACTGATT
1 CTGATTCTGATTCTGATTCTGTTACTAATA
26190973 CTGATTCTGATTCT
1 CTGATTCTGATTCT
26190987 CATTTTGGTT
Statistics
Matches: 125, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
30 98 0.78
31 27 0.22
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.47
Consensus pattern (30 bp):
CTGATTCTGATTCTGATTCTGTTACTAATA
Found at i:26190896 original size:67 final size:66
Alignment explanation
Indices: 26190788--26190986 Score: 267
Period size: 61 Copynumber: 3.2 Consensus size: 66
26190778 TTGCATTTAC
*
26190788 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTACTAC
1 ATTCTGATTCTGATTCTGTCACGTAA-TCTGATTCTGATTCTGATTCTGATTCTGTTACTAATAC
26190853 TG
65 TG
26190855 ATTCTGATTCTGATTCTGTCACGT-A----ATTCTGATTCTGATTCTGATTCTGTTACTAATACT
1 ATTCTGATTCTGATTCTGTCACGTAATCTGATTCTGATTCTGATTCTGATTCTGTTACTAATACT
26190915 G
66 G
* * * *
26190916 ATTCTGATTCTGATTCTGTTAC-TAA--T-A--CTGACTCTGATTCTGATTCTGTTACTGATTCT
1 ATTCTGATTCTGATTCTGTCACGTAATCTGATTCTGATTCTGATTCTGATTCTGTTACTAATACT
26190975 G
66 G
26190976 ATTCTGATTCT
1 ATTCTGATTCT
26190987 CATTTTGGTT
Statistics
Matches: 125, Mismatches: 5, Indels: 11
0.89 0.04 0.08
Matches are distributed among these distances:
60 42 0.34
61 57 0.46
62 1 0.01
66 1 0.01
67 24 0.19
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.47
Consensus pattern (66 bp):
ATTCTGATTCTGATTCTGTCACGTAATCTGATTCTGATTCTGATTCTGATTCTGTTACTAATACT
G
Found at i:26202164 original size:13 final size:13
Alignment explanation
Indices: 26202146--26202174 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
26202136 CACACGGCGT
26202146 GCCTAAAGCCGTG
1 GCCTAAAGCCGTG
26202159 GCCTAAAGCCGTG
1 GCCTAAAGCCGTG
26202172 GCC
1 GCC
26202175 AAACAAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.34, G:0.31, T:0.14
Consensus pattern (13 bp):
GCCTAAAGCCGTG
Found at i:26202634 original size:16 final size:17
Alignment explanation
Indices: 26202613--26202649 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
26202603 CTTTTATTAA
26202613 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTT
26202630 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTT
26202647 GTT
1 GTT
26202650 CTCATTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.05, G:0.14, T:0.59
Consensus pattern (17 bp):
GTTTTTAAGATTCATTT
Found at i:26211564 original size:127 final size:127
Alignment explanation
Indices: 26211338--26211589 Score: 495
Period size: 127 Copynumber: 2.0 Consensus size: 127
26211328 AGCGAGCATA
26211338 TCATGTTAAGGCTTTGGGGTGCAGGTGCTGACCTTGTGTACAGACCCGTGAGTAGCTCAAATGCG
1 TCATGTTAAGGCTTTGGGGTGCAGGTGCTGACCTTGTGTACAGACCCGTGAGTAGCTCAAATGCG
*
26211403 AGCATTACATAATATGTGGTAGCTTTAGTTACATACGTTACGTGCTATGAGTTGGTTCTATC
66 AGCATTACATAATATGTGGTAGCTTTAGCTACATACGTTACGTGCTATGAGTTGGTTCTATC
26211465 TCATGTTAAGGCTTTGGGGTGCAGGTGCTGACCTTGTGTACAGACCCGTGAGTAGCTCAAATGCG
1 TCATGTTAAGGCTTTGGGGTGCAGGTGCTGACCTTGTGTACAGACCCGTGAGTAGCTCAAATGCG
26211530 AGCATTACATAATATGTGGTAGCTTTAGCTACATACGTTACGTGCTATGAGTTGGTTCTA
66 AGCATTACATAATATGTGGTAGCTTTAGCTACATACGTTACGTGCTATGAGTTGGTTCTA
26211590 GCTGCGTATA
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 124 1.00
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (127 bp):
TCATGTTAAGGCTTTGGGGTGCAGGTGCTGACCTTGTGTACAGACCCGTGAGTAGCTCAAATGCG
AGCATTACATAATATGTGGTAGCTTTAGCTACATACGTTACGTGCTATGAGTTGGTTCTATC
Found at i:26215058 original size:12 final size:12
Alignment explanation
Indices: 26215043--26215071 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
26215033 AAAATATGTT
26215043 ATAAAATTTTCA
1 ATAAAATTTTCA
26215055 AT-AAATTTTCA
1 ATAAAATTTTCA
26215066 ATAAAA
1 ATAAAA
26215072 ATACTACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (12 bp):
ATAAAATTTTCA
Found at i:26215262 original size:22 final size:21
Alignment explanation
Indices: 26215237--26215284 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 21
26215227 AAATTTAGTT
26215237 TTTATATTTTTAATTTTAAAAA
1 TTTATATTTTTAATTTT-AAAA
* *
26215259 TTTAATTTTTTTAATTTTTAAA
1 TTT-ATATTTTTAATTTTAAAA
26215281 TTTA
1 TTTA
26215285 AAAAATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 1 0.04
22 9 0.39
23 13 0.57
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTATATTTTTAATTTTAAAA
Found at i:26215276 original size:30 final size:30
Alignment explanation
Indices: 26215211--26215288 Score: 97
Period size: 29 Copynumber: 2.6 Consensus size: 30
26215201 TAAATTTATG
* *
26215211 TAATTTTGAATATTT-AAAATTTAGTTTTTA
1 TAATTTTTAAT-TTTAAAAATTTAATTTTTA
*
26215241 T-ATTTTTAATTTTAAAAATTTAATTTTTT
1 TAATTTTTAATTTTAAAAATTTAATTTTTA
*
26215270 TAATTTTTAAATTTAAAAA
1 TAATTTTTAATTTTAAAAA
26215289 ATTTTAAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 3 0.07
29 22 0.52
30 17 0.40
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.58
Consensus pattern (30 bp):
TAATTTTTAATTTTAAAAATTTAATTTTTA
Found at i:26215285 original size:22 final size:23
Alignment explanation
Indices: 26215243--26215285 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
26215233 AGTTTTTATA
26215243 TTTTTAATTTTAAAAATTTAATT
1 TTTTTAATTTTAAAAATTTAATT
*
26215266 TTTTTAATTTT-TAAATTTAA
1 TTTTTAATTTTAAAAATTTAA
26215286 AAAATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTTTAATTTTAAAAATTTAATT
Found at i:26216875 original size:47 final size:47
Alignment explanation
Indices: 26216801--26216891 Score: 137
Period size: 47 Copynumber: 1.9 Consensus size: 47
26216791 TTTTTCTCAG
* * *
26216801 CATAGTTGTTCTTGGTAAAGATTGTTCCGAACAAGAGTTGTTATCAA
1 CATAATTGTTCTTGGTAAAGATTGTTCCAAACAAGAGCTGTTATCAA
* *
26216848 CATAATTGTTCTTTGTAAAGGTTGTTCCAAACAAGAGCTGTTAT
1 CATAATTGTTCTTGGTAAAGATTGTTCCAAACAAGAGCTGTTAT
26216892 GTGGTGATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (47 bp):
CATAATTGTTCTTGGTAAAGATTGTTCCAAACAAGAGCTGTTATCAA
Found at i:26217453 original size:15 final size:15
Alignment explanation
Indices: 26217433--26217463 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26217423 ATTCGATGTG
26217433 GGCTTTTGTGGAGAT
1 GGCTTTTGTGGAGAT
26217448 GGCTTTTGTGGAGAT
1 GGCTTTTGTGGAGAT
26217463 G
1 G
26217464 TACTTGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.06, G:0.42, T:0.39
Consensus pattern (15 bp):
GGCTTTTGTGGAGAT
Found at i:26227722 original size:20 final size:19
Alignment explanation
Indices: 26227674--26227722 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 19
26227664 AGTATAAGTT
*
26227674 AAAAAAATAATTATTTATA
1 AAAAAAATTATTATTTATA
26227693 AAAAATAATTATTCATTTATA
1 AAAAA-AATTATT-ATTTATA
26227714 AAAAAAATT
1 AAAAAAATT
26227723 TAACGGTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 10 0.37
21 12 0.44
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAAAATTATTATTTATA
Found at i:26230897 original size:27 final size:27
Alignment explanation
Indices: 26230867--26231044 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26230857 ATATTGAGCC
* * * *
26230867 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26230894 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26230921 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26230949 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26230976 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26231003 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26231030 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26231045 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26231006 original size:82 final size:81
Alignment explanation
Indices: 26230888--26231043 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26230878 TGCTATATAA
* *
26230888 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26230953 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26230970 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26231034 CACTTAGTGC
65 CACTTAGTGC
26231044 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26231612 original size:13 final size:13
Alignment explanation
Indices: 26231594--26231618 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26231584 TACTAAATTT
26231594 TCATGGATTCAAG
1 TCATGGATTCAAG
26231607 TCATGGATTCAA
1 TCATGGATTCAA
26231619 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:26235525 original size:19 final size:19
Alignment explanation
Indices: 26235490--26235587 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
26235480 AGATTACAAG
26235490 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
26235511 ATCATATTTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
26235530 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
26235547 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
26235566 ATCATATCTACGATTGCAT
1 ATCATATCTAAGATTGCAT
26235585 ATC
1 ATC
26235588 CTTAAAGATT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 17 0.24
19 47 0.65
20 1 0.01
21 7 0.10
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:26235559 original size:36 final size:37
Alignment explanation
Indices: 26235490--26235587 Score: 135
Period size: 36 Copynumber: 2.6 Consensus size: 37
26235480 AGATTACAAG
*
26235490 ATCATATCTTCAAGATTGCATATCATATTTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
26235530 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
*
26235566 ATCATATCTACGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
26235588 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
36 34 0.63
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:26235568 original size:14 final size:15
Alignment explanation
Indices: 26235531--26235568 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
26235521 AGATTGCATA
26235531 TCATATCTAAGATTG
1 TCATATCTAAGATTG
26235546 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
26235563 -CATATC
1 TCATATC
26235569 ATATCTACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:26235977 original size:83 final size:84
Alignment explanation
Indices: 26235838--26236264 Score: 716
Period size: 83 Copynumber: 5.1 Consensus size: 84
26235828 TATAAAAGGA
26235838 GATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCT
1 GATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCT
26235903 GTTACCCTACTGCTTA-GG
66 GTTACCCTACTGCTTAGGG
*
26235921 GATTAAGGCGAGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCT
1 GATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCT
26235986 GTTACCCTACTGCTTAGGG
66 GTTACCCTACTGCTTAGGG
* * *
26236005 GATTAAGGCGAGTCTTCGATTTGCTCCACTACTGCTTACGGAGATAAGATCTGCAAGTTTAACCT
1 GATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCT
26236070 GTTACCCTACTGCTTAGGG
66 GTTACCCTACTGCTTAGGG
* * * *
26236089 GATTAAGACGAGTC-TCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCCGCAGATTTAACCT
1 GATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCT
* *
26236153 GCTACCCTACTGCTTAAGG
66 GTTACCCTACTGCTTAGGG
* * *
26236172 GATTAAGAC-AGTCTTCGATCTGCTCCAATACTACTTAGGGAGATAAGATCTGCAAATTTAACCT
1 GATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCT
26236236 GTTACCCTACTGCTTAGGG
66 GTTACCCTACTGCTTAGGG
26236255 GATTAAGGCG
1 GATTAAGGCG
26236265 CTGAATTTTG
Statistics
Matches: 319, Mismatches: 22, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
82 4 0.01
83 220 0.69
84 95 0.30
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
GATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCT
GTTACCCTACTGCTTAGGG
Found at i:26236118 original size:167 final size:168
Alignment explanation
Indices: 26235833--26236261 Score: 711
Period size: 167 Copynumber: 2.6 Consensus size: 168
26235823 AAGACTATAA
26235833 AAGGAGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
1 AAGG-GATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
* *
26235898 AACCTGTTACCCTACTGCTTA-GGGATTAAGGCGAGTCTTTGATCTGCTCCACTACTGCTTAGGG
65 AACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
* *
26235962 AGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTT
130 AGATAAGATCCGCAAATTTAACCTGCTACCCTACTGCTT
* * * *
26236001 AGGGGATTAAGGCGAGTCTTCGATTTGCTCCACTACTGCTTACGGAGATAAGATCTGCAAGTTTA
1 AAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTA
*
26236066 ACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGTC-TCGATCTGTTCCACTACTGCTTAGGGA
66 ACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
*
26236130 GATAAGATCCGCAGATTTAACCTGCTACCCTACTGCTT
131 GATAAGATCCGCAAATTTAACCTGCTACCCTACTGCTT
* * *
26236168 AAGGGATTAAGAC-AGTCTTCGATCTGCTCCAATACTACTTAGGGAGATAAGATCTGCAAATTTA
1 AAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTA
26236232 ACCTGTTACCCTACTGCTTAGGGGATTAAG
66 ACCTGTTACCCTACTGCTTAGGGGATTAAG
26236262 GCGCTGAATT
Statistics
Matches: 243, Mismatches: 17, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
166 76 0.31
167 149 0.61
168 18 0.07
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (168 bp):
AAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTA
ACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCACTACTGCTTAGGGA
GATAAGATCCGCAAATTTAACCTGCTACCCTACTGCTT
Found at i:26237227 original size:6 final size:6
Alignment explanation
Indices: 26237212--26237264 Score: 65
Period size: 6 Copynumber: 8.7 Consensus size: 6
26237202 GGCCTCTCCA
26237212 TTTT-T TTTTCT TTTTCT TTTTCT TTTCTCT TTTTCT CTTTT-T CTTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTT-TCT TTTTCT -TTTTCT -TTTTCT
26237261 TTTT
1 TTTT
26237265 TCCTTTTTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
5 4 0.09
6 29 0.66
7 11 0.25
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTCT
Found at i:26237237 original size:21 final size:21
Alignment explanation
Indices: 26237212--26237276 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
26237202 GGCCTCTCCA
* *
26237212 TTTTTTTTTCTTTTTCTTTTTC
1 TTTTCTTTT-TTTCTCTTTTTC
*
26237234 TTTTCTCTTTTTCTCTTTTTC
1 TTTTCTTTTTTTCTCTTTTTC
26237255 TTTTC-TTTTTTC-CTTTTT-
1 TTTTCTTTTTTTCTCTTTTTC
26237273 TTTT
1 TTTT
26237277 GAAATAGAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 4 0.10
19 6 0.15
20 6 0.15
21 16 0.41
22 7 0.18
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTCTTTTTTTCTCTTTTTC
Found at i:26237242 original size:13 final size:12
Alignment explanation
Indices: 26237212--26237264 Score: 65
Period size: 13 Copynumber: 4.3 Consensus size: 12
26237202 GGCCTCTCCA
26237212 TTTT-TTTTTCT
1 TTTTCTTTTTCT
26237223 TTTTCTTTTTCT
1 TTTTCTTTTTCT
26237235 TTTCTCTTTTTCT
1 TTT-TCTTTTTCT
26237248 CTTTT-TCTTTTCT
1 -TTTTCT-TTTTCT
26237261 TTTT
1 TTTT
26237265 TCCTTTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
11 4 0.11
12 15 0.39
13 16 0.42
14 3 0.08
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTCTTTTTCT
Found at i:26237242 original size:19 final size:18
Alignment explanation
Indices: 26237212--26237276 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 18
26237202 GGCCTCTCCA
26237212 TTTTTTTT-TCTTTTTCT
1 TTTTTTTTCTCTTTTTCT
26237229 TTTTCTTTTCTCTTTTTCT
1 TTTT-TTTTCTCTTTTTCT
26237248 CTTTTTCTTT-TCTTTTTTCCT
1 -TTTTT-TTTCTC-TTTTT-CT
26237269 TTTTTTTT
1 TTTTTTTT
26237277 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.10
18 4 0.10
19 15 0.36
20 17 0.40
21 2 0.05
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTTTCTCTTTTTCT
Found at i:26237252 original size:27 final size:27
Alignment explanation
Indices: 26237214--26237272 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
26237204 CCTCTCCATT
*
26237214 TTTTTTTCTTTTTCTTTTTCTTTTCT-C
1 TTTTTCTCTTTTTC-TTTTCTTTTCTCC
*
26237241 TTTTTCTCTTTTTCTTTTCTTTTTTCC
1 TTTTTCTCTTTTTCTTTTCTTTTCTCC
26237268 TTTTT
1 TTTTT
26237273 TTTTGAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 10 0.34
27 19 0.66
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (27 bp):
TTTTTCTCTTTTTCTTTTCTTTTCTCC
Found at i:26237265 original size:13 final size:13
Alignment explanation
Indices: 26237212--26237276 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 13
26237202 GGCCTCTCCA
26237212 TTTTT-TTTTCTT
1 TTTTTCTTTTCTT
*
26237224 TTTCT-TTTTC-T
1 TTTTTCTTTTCTT
* *
26237235 TTTCTCTTTTTCTC
1 TTTTTC-TTTTCTT
26237249 TTTTTCTTTTCTT
1 TTTTTCTTTTCTT
*
26237262 TTTTCCTTTT-TT
1 TTTTTCTTTTCTT
26237274 TTT
1 TTT
26237277 GAAATAGAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
11 6 0.13
12 14 0.31
13 20 0.44
14 5 0.11
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTCTTTTCTT
Found at i:26237270 original size:8 final size:7
Alignment explanation
Indices: 26237215--26237273 Score: 56
Period size: 6 Copynumber: 8.9 Consensus size: 7
26237205 CTCTCCATTT
26237215 TTTTTTC
1 TTTTTTC
26237222 -TTTTTC
1 TTTTTTC
26237228 -TTTTTC
1 TTTTTTC
*
26237234 TTTTCTC
1 TTTTTTC
26237241 -TTTTTC
1 TTTTTTC
26237247 TCTTTTTC
1 T-TTTTTC
26237255 --TTTTC
1 TTTTTTC
26237260 TTTTTTCC
1 TTTTTT-C
26237268 TTTTTT
1 TTTTTT
26237274 TTTGAAATAG
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
5 5 0.11
6 17 0.39
7 9 0.20
8 13 0.30
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTTTTC
Found at i:26243333 original size:15 final size:15
Alignment explanation
Indices: 26243290--26243323 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26243280 CGGTTCAAAG
*
26243290 AAAAT-AAACTATTA
1 AAAATCAAAATATTA
26243304 AAAATCAAAATATTA
1 AAAATCAAAATATTA
26243319 AAAAT
1 AAAAT
26243324 TATAAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATCAAAATATTA
Found at i:26249032 original size:35 final size:36
Alignment explanation
Indices: 26248966--26249033 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 36
26248956 ATGAGCTCGG
* *
26248966 ATCTGAATTACCAGTCCAGGCTCAATTCATTTCCTA
1 ATCTGAATTACCAGTCCAGGCTAAATCCATTTCCTA
* *
26249002 ATCTG-ATTACCCGTCCGGGCTAAATCCATTTC
1 ATCTGAATTACCAGTCCAGGCTAAATCCATTTC
26249034 AGCACACATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 23 0.82
36 5 0.18
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (36 bp):
ATCTGAATTACCAGTCCAGGCTAAATCCATTTCCTA
Found at i:26258796 original size:17 final size:17
Alignment explanation
Indices: 26258774--26258808 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26258764 TATTTCGCAG
* *
26258774 TTGGCGAGTTTCTTATT
1 TTGGCGAGATCCTTATT
26258791 TTGGCGAGATCCTTATT
1 TTGGCGAGATCCTTATT
26258808 T
1 T
26258809 GACGGACTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.23, T:0.49
Consensus pattern (17 bp):
TTGGCGAGATCCTTATT
Found at i:26264987 original size:15 final size:15
Alignment explanation
Indices: 26264963--26264992 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26264953 AGATCAGAAG
26264963 GTCATCAATGAACAC
1 GTCATCAATGAACAC
*
26264978 GTCATTAATGAACAC
1 GTCATCAATGAACAC
26264993 AACTATAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.23
Consensus pattern (15 bp):
GTCATCAATGAACAC
Found at i:26267381 original size:53 final size:53
Alignment explanation
Indices: 26267198--26267451 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
26267188 ATTAGGGTTT
* *
26267198 AAGGATACCATGTAAGACCATGCCAA-AGCATGGAAATTGGTACGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGA-CATGG-CATTGGTA-AG-TTCATAAGGC
* * ** *
26267253 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
26267308 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
26267361 AAGGATACCCTATAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * *
26267410 AAGGATACCATGTAAGACCATGACAAGTCATGGCAATGGTAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAA
26267452 AGTACCCACG
Statistics
Matches: 166, Mismatches: 26, Indels: 20
0.78 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
51 1 0.01
52 8 0.05
53 42 0.25
54 7 0.04
55 65 0.39
56 5 0.03
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:26267404 original size:108 final size:109
Alignment explanation
Indices: 26267205--26267405 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 109
26267195 TTTAAGGATA
* *
26267205 CCATGTAAGACCATGCCAAAGCATGGAAATTGGTACGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAAGCATGGAAATTGGTAC-GTTTCTAAGGCAAGGAAACCATATAAGA
* *
26267270 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
65 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
26267315 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCCTATAAG
1 CCATGTAAGACCATGCCAAAGCATGGAAATTGGT-ACGTTTC-TAAGGCAAGGAAACCATATAAG
*
26267377 ACCATGTCAAGACATGGCAATGGTAAGTT
64 ACCATGTCAAGACATGGCAATGATAAGTT
26267406 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 6 0.08
110 26 0.32
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAAGCATGGAAATTGGTACGTTTCTAAGGCAAGGAAACCATATAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:26274777 original size:55 final size:53
Alignment explanation
Indices: 26274690--26274923 Score: 221
Period size: 55 Copynumber: 4.4 Consensus size: 53
26274680 TTAGGGGTTT
* *
26274690 AAGGATGCCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * * *
26274745 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * *
26274800 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* *
26274853 AATGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
*
26274902 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
26274924 AAAAGTCATG
Statistics
Matches: 148, Mismatches: 24, Indels: 20
0.77 0.12 0.10
Matches are distributed among these distances:
49 20 0.14
52 6 0.04
53 40 0.27
54 12 0.08
55 66 0.45
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:26274873 original size:53 final size:53
Alignment explanation
Indices: 26274697--26274897 Score: 224
Period size: 55 Copynumber: 3.7 Consensus size: 53
26274687 TTTAAGGATG
* * * *
26274697 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAA
1 CCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGCAAAGATA
* * * * *
26274752 TCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGCAAAGATA
* * *
26274807 CCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAATGATA
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAAGATA
* *
26274860 CCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
26274898 TCAAAAGGAT
Statistics
Matches: 122, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 47 0.39
54 8 0.07
55 65 0.53
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAAGATA
Found at i:26274896 original size:108 final size:110
Alignment explanation
Indices: 26274697--26274897 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
26274687 TTTAAGGATG
*
26274697 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
26274762 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
26274807 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAATGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
26274869 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
26274898 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:26289841 original size:55 final size:55
Alignment explanation
Indices: 26289776--26289885 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
26289766 GCACTTTAGG
26289776 AGCTTGAATACATGCACTTTTGTTAAGTTTTAGCTAAGTTTTTTTTTAATTCTAT
1 AGCTTGAATACATGCACTTTTGTTAAGTTTTAGCTAAGTTTTTTTTTAATTCTAT
* *
26289831 AGCTTGAATACATGCACTTTTGTTATGTTTTAGTTAAGTTTTTTTTTAATTCTAT
1 AGCTTGAATACATGCACTTTTGTTAAGTTTTAGCTAAGTTTTTTTTTAATTCTAT
26289886 CTAAATTTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.25, C:0.10, G:0.13, T:0.53
Consensus pattern (55 bp):
AGCTTGAATACATGCACTTTTGTTAAGTTTTAGCTAAGTTTTTTTTTAATTCTAT
Done.