Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 85 of 333
Found at i:26294461 original size:54 final size:54
Alignment explanation
Indices: 26294403--26294586 Score: 237
Period size: 54 Copynumber: 3.4 Consensus size: 54
26294393 TTGGTAAGAT
* *
26294403 AAGGATATCATGTAAGACCATGACAAGGCATGGCATTGATAAGTTCTGTAAGGC
1 AAGGATATCATGTAAGACCATGACAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * *
26294457 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGACAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * * *
26294512 AAAGG-TCTCATGTAAGACCATGCCAAGGCATTGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATATCATGTAAGACCATGACAAGGCATGGCATTGATGAGTTCTATAAGGC
*
26294565 AAGGATACCATGTAAGACCATG
1 AAGGATATCATGTAAGACCATG
26294587 TCAAAACATG
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.04
53 22 0.20
54 41 0.37
55 41 0.37
56 4 0.04
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGACAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:26296189 original size:40 final size:40
Alignment explanation
Indices: 26296131--26296332 Score: 307
Period size: 40 Copynumber: 5.1 Consensus size: 40
26296121 AGCCCGGATG
* *
26296131 TAACAACCAGCACAAATGCCTTCGGGACTTAACCCGTAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
* *
26296171 TAGCAACCAGCATGAATGCCTTCGGGACTTAACCCGGAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
* * *
26296211 TAACAACCAGCACGAATGCCTTTGGTACTTAACCCGGGAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
*
26296251 TAACAACCAGCACGAATGCCTTCGGGACATAACCC-GAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
* *
26296290 TAACAACCAGCATGAATGCCTTCGGGACTTAACCCGGATA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
26296330 TAA
1 TAA
26296333 TCCTCAATTG
Statistics
Matches: 145, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 36 0.25
40 109 0.75
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (40 bp):
TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
Found at i:26304204 original size:40 final size:40
Alignment explanation
Indices: 26304160--26304384 Score: 333
Period size: 40 Copynumber: 5.6 Consensus size: 40
26304150 AACCCAATTA
* * ** **
26304160 CCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAATG
* *
26304200 CCTTCGGGACTTAACCCGAAAATAGCAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAATG
*
26304240 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAATG
* *
26304280 CCTTCGGGACTTAATCCGGGAATAACAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAATG
*
26304320 CCTTCGGGACTTAACCCAGAAATAACAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAATG
*
26304360 CCTTCGGGACTTAACCCGGATATAA
1 CCTTCGGGACTTAACCCGGAAATAA
26304385 TCCGCAATTG
Statistics
Matches: 166, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 166 1.00
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAATG
Found at i:26313562 original size:18 final size:18
Alignment explanation
Indices: 26313529--26313571 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
26313519 TTACACATGC
*
26313529 AGGCCCATTGGCCCATCG
1 AGGCCCATTAGCCCATCG
26313547 -GGCCCATTCAGCCCATCG
1 AGGCCCATT-AGCCCATCG
26313565 AGGCCCA
1 AGGCCCA
26313572 AGTCCACGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 8 0.36
19 6 0.27
ACGTcount: A:0.19, C:0.42, G:0.26, T:0.14
Consensus pattern (18 bp):
AGGCCCATTAGCCCATCG
Found at i:26330074 original size:68 final size:68
Alignment explanation
Indices: 26329990--26330146 Score: 190
Period size: 68 Copynumber: 2.3 Consensus size: 68
26329980 CTTAAAATTA
* * * * * *
26329990 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCATTATCATTTATGCTGTTTTATTTGGTAAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTATTTTATTTAGTAAA
26330055 TGC
66 TGC
* * * * *
26330058 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACCATATATGCTATTTTATTTAGTAAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTATTTTATTTAGTAAA
*
26330123 TGT
66 TGC
*
26330126 AGCTGTCCGAATCTGTT-GATT
1 AGCTGTCCGAATGTGTTAGATT
26330147 TCACAGTTAA
Statistics
Matches: 75, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
67 3 0.04
68 72 0.96
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (68 bp):
AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTATTTTATTTAGTAAA
TGC
Found at i:26332909 original size:43 final size:43
Alignment explanation
Indices: 26332861--26332979 Score: 193
Period size: 43 Copynumber: 2.8 Consensus size: 43
26332851 GCATGAAACT
*
26332861 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
26332904 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * *
26332947 CAGTGATGTGTATTCGGGTCATCGTGCCTAGCA
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
26332980 TAATGCCGGT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.12, C:0.23, G:0.34, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:26333210 original size:29 final size:29
Alignment explanation
Indices: 26333178--26333332 Score: 104
Period size: 29 Copynumber: 5.4 Consensus size: 29
26333168 CTTTAACCGA
*
26333178 GCACTATGTATGCGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTAATTGAG
* ** **
26333207 GCACTGTGTGTGCGA-ATTCCTTTAACCGA-
1 GCACTATGTGTGCGAGA-T-CGGTAATTGAG
*
26333236 GCACTATTTGTGCGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTAATTGAG
* * * * **
26333265 GCACTGTGTGTGCAAGTTC-TTCAACCGA-
1 GCACTATGTGTGCGAGATCGGT-AATTGAG
* *
26333293 GCACTATGTGTGCGAGATCGGTCAGTG-G
1 GCACTATGTGTGCGAGATCGGTAATTGAG
*
26333321 GCACTAAGTGTG
1 GCACTATGTGTG
26333333 TGAAATGAGA
Statistics
Matches: 92, Mismatches: 27, Indels: 15
0.69 0.20 0.11
Matches are distributed among these distances:
28 37 0.40
29 48 0.52
30 7 0.08
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCGGTAATTGAG
Found at i:26333219 original size:58 final size:58
Alignment explanation
Indices: 26333146--26333314 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 58
26333136 CGAATGATTA
*
26333146 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTATGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
26333204 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATTTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
26333262 GAGGCACTGTGTGTGCAAGTT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
26333315 CAGTGGGCAC
Statistics
Matches: 104, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
57 30 0.29
58 74 0.71
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:26339276 original size:35 final size:35
Alignment explanation
Indices: 26339237--26339330 Score: 134
Period size: 35 Copynumber: 2.7 Consensus size: 35
26339227 ATAACAAAAA
* *
26339237 AGGTTCGCATAACATCATGGGTTCCCATATAGCAT
1 AGGTTCGCATAACAACATGAGTTCCCATATAGCAT
* * *
26339272 AGGTTCACATAACAACATAAGTTCGCATATAGCAT
1 AGGTTCGCATAACAACATGAGTTCCCATATAGCAT
*
26339307 AGGTTTGCATAACAACATGAGTTC
1 AGGTTCGCATAACAACATGAGTTC
26339331 ACACAATCAT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 51 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (35 bp):
AGGTTCGCATAACAACATGAGTTCCCATATAGCAT
Found at i:26339282 original size:17 final size:17
Alignment explanation
Indices: 26339256--26339311 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
26339246 TAACATCATG
*
26339256 GGTTCCCATATAGCATA
1 GGTTCACATATAGCATA
* *
26339273 GGTTCACATAACAACATA
1 GGTTCACAT-ATAGCATA
* *
26339291 AGTTCGCATATAGCATA
1 GGTTCACATATAGCATA
26339308 GGTT
1 GGTT
26339312 TGCATAACAA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
17 17 0.57
18 13 0.43
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (17 bp):
GGTTCACATATAGCATA
Found at i:26339295 original size:18 final size:18
Alignment explanation
Indices: 26339269--26339333 Score: 51
Period size: 18 Copynumber: 3.7 Consensus size: 18
26339259 TCCCATATAG
*
26339269 CATAGGTTCACATAACAA
1 CATAAGTTCACATAACAA
* * *
26339287 CATAAGTTCGCAT-ATAG
1 CATAAGTTCACATAACAA
* **
26339304 CATAGGTTTGCATAACAA
1 CATAAGTTCACATAACAA
*
26339322 CATGAGTTCACA
1 CATAAGTTCACA
26339334 CAATCATTGT
Statistics
Matches: 34, Mismatches: 12, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
17 13 0.38
18 21 0.62
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.26
Consensus pattern (18 bp):
CATAAGTTCACATAACAA
Found at i:26339316 original size:17 final size:17
Alignment explanation
Indices: 26339199--26339317 Score: 78
Period size: 18 Copynumber: 6.9 Consensus size: 17
26339189 TTTAAGCATG
26339199 GCATA-GTTCGCATATA
1 GCATAGGTTCGCATATA
* *
26339215 GCATATGTTCGCATAACA
1 GCATAGGTTCGCAT-ATA
** * *
26339233 AAAAAGGTTCGCATAACA
1 GCATAGGTTCGCAT-ATA
* * *
26339251 TCATGGGTTCCCATATA
1 GCATAGGTTCGCATATA
* *
26339268 GCATAGGTTCACATAACA
1 GCATAGGTTCGCAT-ATA
* *
26339286 ACATAAGTTCGCATATA
1 GCATAGGTTCGCATATA
*
26339303 GCATAGGTTTGCATA
1 GCATAGGTTCGCATA
26339318 ACAACATGAG
Statistics
Matches: 78, Mismatches: 22, Indels: 5
0.74 0.21 0.05
Matches are distributed among these distances:
16 5 0.06
17 35 0.45
18 38 0.49
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (17 bp):
GCATAGGTTCGCATATA
Found at i:26341808 original size:18 final size:18
Alignment explanation
Indices: 26341785--26341823 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26341775 TTTAGTTAAA
26341785 TGGGCTCACACG-CCCATG
1 TGGGCTCACACGTCCC-TG
*
26341803 TGGGCTTACACGTCCCTG
1 TGGGCTCACACGTCCCTG
26341821 TGG
1 TGG
26341824 TCCATACGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.13, C:0.33, G:0.31, T:0.23
Consensus pattern (18 bp):
TGGGCTCACACGTCCCTG
Found at i:26345467 original size:37 final size:37
Alignment explanation
Indices: 26345417--26345495 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26345407 TTATTACGAA
* * *
26345417 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26345454 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26345491 GTCTT
1 GTCTT
26345496 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26345874 original size:47 final size:47
Alignment explanation
Indices: 26345614--26345863 Score: 419
Period size: 47 Copynumber: 5.3 Consensus size: 47
26345604 CCCTTCGGGA
* * * * * *
26345614 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26345661 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26345708 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26345755 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26345802 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26345849 CTTATCACATATATA
1 CTTATCACATATATA
26345864 TACACTCACA
Statistics
Matches: 191, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 191 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26365399 original size:48 final size:48
Alignment explanation
Indices: 26365304--26365407 Score: 113
Period size: 48 Copynumber: 2.2 Consensus size: 48
26365294 TGTGCTAAGC
* * **
26365304 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAACTAGT
**
26365352 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAACTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAACTAGT
*
26365400 ATAAGACC
1 GTAAGACC
26365408 ATAGTTGGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
47 8 0.17
48 39 0.83
ACGTcount: A:0.31, C:0.22, G:0.30, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAACTAGT
Found at i:26370040 original size:47 final size:47
Alignment explanation
Indices: 26369998--26370314 Score: 519
Period size: 47 Copynumber: 6.7 Consensus size: 47
26369988 TATACACTTC
* * *
26369998 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTT
* * **
26370045 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
*
26370092 CACATTCATCACATTGGCCATTCGGCTTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
26370139 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
*
26370186 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATCTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
26370233 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
* *
26370280 CACATTCATCACATTGGCCACTCGGCCCTATCACA
1 CACATTCATCACATTGGCCATTCGGCCTTATCACA
26370315 TATATATACT
Statistics
Matches: 256, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 255 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
Found at i:26372884 original size:78 final size:76
Alignment explanation
Indices: 26372777--26372978 Score: 287
Period size: 78 Copynumber: 2.6 Consensus size: 76
26372767 ATATTCGATG
*
26372777 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
1 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGATT
26372842 CGTGCTAGTAT
66 CGTGCTAGTAT
* * ** *
26372853 TATATCCGGGCTTAAAGACCTACAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCTCGCAGGA
1 TATATCCGGG-TTAAA-TCCTGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGA
*
26372918 TTCGTGCTGGTAT
64 TTCGTGCTAGTAT
* * * *
26372931 TATATCCGGGATAAATCCTGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATCCGGG
26372979 CCTTCGTTCC
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
76 36 0.33
77 9 0.08
78 64 0.59
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (76 bp):
TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGATT
CGTGCTAGTAT
Found at i:26372898 original size:40 final size:38
Alignment explanation
Indices: 26372777--26372978 Score: 271
Period size: 38 Copynumber: 5.3 Consensus size: 38
26372767 ATATTCGATG
26372777 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
* *
26372815 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAT
1 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
* * *
26372853 TATATCCGGGCTTAAAGACCTACAGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCTGCAGGCTTCGTGCTGGTAT
* *
26372893 AATATCCGGGTTAAAT-CTCGCAGGATTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCT-GCAGGCTTCGTGCTGGTAT
* * *
26372931 TATATCCGGGATAAATCCTGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
*
26372969 TATATTCGGG
1 TATATCCGGG
26372979 CCTTCGTTCC
Statistics
Matches: 142, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
37 2 0.01
38 101 0.71
39 12 0.08
40 27 0.19
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
Found at i:26373125 original size:85 final size:86
Alignment explanation
Indices: 26372971--26373167 Score: 333
Period size: 85 Copynumber: 2.3 Consensus size: 86
26372961 GCTGGTATTA
* * * *
26372971 TATTCGGGCCTTCGTTCCTAGCAGGCTTTGTGCCGGTGATGTGTATTCGGGCGTTCGTGCCTGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
26373036 AGGTTTCGTGCCGGTGATGTG
66 AGGTTTCGTGCCGGTGATGTG
* *
26373057 TATTCGGGCCTTCGTGCCTAGCAGGCTTCG-GCCGGTGATGTGTATTCTGGCCTTCGTGCCTAGT
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
26373121 AGGTTTCGTGCCGGTGATGTG
66 AGGTTTCGTGCCGGTGATGTG
26373142 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
26373168 GTAATGCCGG
Statistics
Matches: 105, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
85 77 0.73
86 28 0.27
ACGTcount: A:0.09, C:0.24, G:0.35, T:0.32
Consensus pattern (86 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
AGGTTTCGTGCCGGTGATGTG
Found at i:26373180 original size:43 final size:43
Alignment explanation
Indices: 26372971--26373167 Score: 315
Period size: 43 Copynumber: 4.6 Consensus size: 43
26372961 GCTGGTATTA
* *
26372971 TATTCGGGCCTTCGTTCCTAGCAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
26373014 TATTCGGGCGTTCGTGCCTGGCAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
26373057 TATTCGGGCCTTCGTGCCTAGCAGGCTTCG-GCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
26373099 TATTCTGGCCTTCGTGCCTAGTAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
26373142 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
26373168 GTAATGCCGG
Statistics
Matches: 139, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
42 39 0.28
43 100 0.72
ACGTcount: A:0.09, C:0.24, G:0.35, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:26375394 original size:22 final size:22
Alignment explanation
Indices: 26375358--26375422 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
26375348 GCAAATACGT
26375358 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
* *
26375380 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
26375402 TTGGTGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
26375423 AATAATTGGC
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:26375623 original size:41 final size:41
Alignment explanation
Indices: 26375566--26375686 Score: 188
Period size: 41 Copynumber: 3.0 Consensus size: 41
26375556 AAAGCCACCG
26375566 GTGGATCCACGGTCATCAAGCAACCATGCAATCCTTAATCA
1 GTGGATCCACGGTCATCAAGCAACCATGCAATCCTTAATCA
* *
26375607 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTTAATCG
1 GTGGATCCACGGTCATCAAGCAACCATGCAATCCTTAATCA
* * * *
26375648 GTGGATCCATGGTCGTTAAGCAACCAAGCAATCCTTAAT
1 GTGGATCCACGGTCATCAAGCAACCATGCAATCCTTAAT
26375687 TTCTTCCTTC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (41 bp):
GTGGATCCACGGTCATCAAGCAACCATGCAATCCTTAATCA
Found at i:26375986 original size:27 final size:27
Alignment explanation
Indices: 26375925--26376259 Score: 266
Period size: 27 Copynumber: 12.4 Consensus size: 27
26375915 TTTACCCTAA
* * *
26375925 AAGGGTGTTTTGGTAAATTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
26375952 AAGCGTATTTTGGTAATTTTGCAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
26375978 TAATGGTATTTCT-ATAATTTTTA-AAAGTC
1 -AAGGGTATTT-TGGTAA-TTTTACAAA-TC
* **
26376007 AAGGGTATTTTTGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * * *
26376034 AGGGGTATTTTTGTAATTTTCCAAA-A
1 AAGGGTATTTTGGTAATTTTACAAATC
26376060 AAGGGGTATTTTGGTAATTTTACAAATC
1 AA-GGGTATTTTGGTAATTTTACAAATC
* *
26376088 GAGGGTATTTTGGTAATTTTACAAGTC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * * **
26376115 GAGGGTATTTCGATAATTTTACAGGTC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * *
26376142 GAGGGTATTTCGATAATTTTACAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * *
26376169 AGGGGTATTTTGATAATTTTTCAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
* * * *
26376195 TAGGGGTATTTTGGTAATTTTGCTAGTC
1 -AAGGGTATTTTGGTAATTTTACAAATC
* ** *
26376223 GAGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
26376250 AAGGGTATTT
1 AAGGGTATTT
26376260 CAGTAATTCT
Statistics
Matches: 256, Mismatches: 41, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.01
27 230 0.90
28 22 0.09
29 1 0.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATC
Found at i:26376332 original size:27 final size:27
Alignment explanation
Indices: 26376252--26376320 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
26376242 TGTAAACCAA
*
26376252 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTATAG
*
26376279 GGGCATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTATAG
26376306 GGGTATTTCAGTAAT
1 GGGTATTTCAGTAAT
26376321 ACTAGTCTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTATAG
Found at i:26377969 original size:33 final size:33
Alignment explanation
Indices: 26377927--26378000 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
26377917 CTATTAATTC
26377927 CACACGGGTAGGGCACACAAGCGTGTCCCAAAG
1 CACACGGGTAGGGCACACAAGCGTGTCCCAAAG
* ** *
26377960 CACACGGGTAGGGGACACTGGTGTGTCCCAAAG
1 CACACGGGTAGGGCACACAAGCGTGTCCCAAAG
26377993 CACACGGG
1 CACACGGG
26378001 CGTGTGCATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.27, C:0.28, G:0.34, T:0.11
Consensus pattern (33 bp):
CACACGGGTAGGGCACACAAGCGTGTCCCAAAG
Found at i:26379155 original size:5 final size:5
Alignment explanation
Indices: 26379145--26379176 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
26379135 AAAACTTATA
*
26379145 AAAAT AAAAT AAAAT AAAAT AAAAG AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA
26379177 CTAGTCTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:26379960 original size:12 final size:12
Alignment explanation
Indices: 26379945--26379975 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26379935 TTAATAAAAT
26379945 AATAATATTTTA
1 AATAATATTTTA
*
26379957 AATAAAATTTTA
1 AATAATATTTTA
26379969 AATAATA
1 AATAATA
26379976 ATTACTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
AATAATATTTTA
Found at i:26379984 original size:15 final size:14
Alignment explanation
Indices: 26379921--26379984 Score: 51
Period size: 15 Copynumber: 4.4 Consensus size: 14
26379911 CTTTTATTTA
*
26379921 TATTAAAATAATACT
1 TATT-AAATAATAAT
*
26379936 TAATAAAATAATAAT
1 T-ATTAAATAATAAT
*
26379951 ATTTTAAATAA-AAT
1 -TATTAAATAATAAT
26379965 T-TTAAATAATAAT
1 TATTAAATAATAAT
26379978 TACTTAA
1 TA-TTAA
26379985 TGAAAATATC
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
12 8 0.20
13 5 0.12
14 3 0.08
15 21 0.52
16 3 0.08
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
TATTAAATAATAAT
Found at i:26388950 original size:40 final size:40
Alignment explanation
Indices: 26388759--26388943 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
26388749 TCGAATGATG
* * * *
26388759 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26388799 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26388839 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26388878 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC-TAAA
*
26388919 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26388944 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26388965 original size:79 final size:78
Alignment explanation
Indices: 26388812--26388966 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 78
26388802 GGACTAAGAT
* * **
26388812 CCGAAGGCATTTGTGTGAGTTACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAA-TCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
26388877 ATCCGGGTTAAGTC
65 ATCCGGGTTAAGTC
* *
26388891 CCGAAGGCATTTGTGCGAGTTACTTTAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTAC--TAATCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
26388954 TATATCC-GGTTAA
62 TAAATCCGGGTTAA
26388967 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
79 39 0.60
80 23 0.35
81 3 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCCGGGTTAAGTC
Found at i:26391808 original size:27 final size:27
Alignment explanation
Indices: 26391777--26392321 Score: 614
Period size: 27 Copynumber: 20.2 Consensus size: 27
26391767 AAAGTACTCC
*
26391777 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26391804 TGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
26391831 TGATTTTTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
26391858 CAATTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
26391885 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
26391912 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
26391939 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
26391966 CAATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * ** *
26391993 CGATTTGTAAAATTACTATTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26392020 CGATTTACAGAATTACCGTTTTACCCA
1 CGATTTACAGAATTACCGTTTTACCCT
*
26392047 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
26392074 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * **
26392101 CGATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26392128 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
26392155 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
26392182 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
26392209 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
26392236 TGATTTACAGAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* *
26392263 C-AGTTTATAGAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
26392290 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26392317 TGATT
1 CGATT
26392322 GTGAAATTAC
Statistics
Matches: 438, Mismatches: 70, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
26 5 0.01
27 428 0.98
28 5 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:26391922 original size:108 final size:108
Alignment explanation
Indices: 26391777--26392333 Score: 818
Period size: 108 Copynumber: 5.2 Consensus size: 108
26391767 AAAGTACTCC
* * * * * *
26391777 CGATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTTGATTTTTA-A
1 CGATTTGTAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCC-TCA-GTTTACA
* * * *
26391841 -AATTACTGTTTTACCCTCAATTTACAAAATTACTGTTTTACCCT
64 GAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
*
26391885 CGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGA
1 CGATTTGTAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGA
* *
26391950 ATTACTATTTTACCCTCAATTTATAGAATTACCGTTTTACCCT
66 ATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
* * *
26391993 CGATTTGTAAAATTACTATTTTACCTTCGATTTACAGAATTACCGTTTTACCCACAGTTTACAGA
1 CGATTTGTAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGA
26392058 ATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
66 ATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
* *
26392101 CGATTTGTAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCAGTTTACAGA
1 CGATTTGTAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGA
*
26392166 ATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
66 ATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
* * *
26392209 CGATTTGTAAAATTACTGTTTTACCCTTGATTTACAGAATTACTAG-TTTACCCTCAGTTTATAG
1 CGATTTGTAAAATTACTGTTTTACCCTCGATTTACAGAATTAC-CGTTTTACCCTCAGTTTACAG
*
26392273 AATTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
65 AATTACT-GTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
* *
26392317 TGA-TTGTGAAATTACTG
1 CGATTTGTAAAATTACTG
26392334 AAATACCTCT
Statistics
Matches: 417, Mismatches: 28, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
106 4 0.01
107 17 0.04
108 395 0.95
109 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (108 bp):
CGATTTGTAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGA
ATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
Found at i:26392521 original size:27 final size:27
Alignment explanation
Indices: 26392326--26392521 Score: 207
Period size: 27 Copynumber: 7.3 Consensus size: 27
26392316 TTGATTGTGA
*
26392326 AATTACTGAAATA-CCTCTGTAGGGTAG
1 AATTACCGAAATACCCT-TGTAGGGTAG
* * * *
26392353 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** * *
26392380 AATTACTAAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
26392407 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
26392434 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
26392461 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
26392488 AATTACCGAGATACCCTTGT-GGAGTAA
1 AATTACCGAAATACCCTTGTAGG-GTAG
26392515 AATTACC
1 AATTACC
26392522 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 142 0.97
28 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:26392757 original size:27 final size:26
Alignment explanation
Indices: 26392719--26392802 Score: 114
Period size: 27 Copynumber: 3.2 Consensus size: 26
26392709 ACGGAGGGAG
*
26392719 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCAC-AATATC
26392746 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTCTGCCACAATATC
* * *
26392772 TGTATTTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTCTGCCACAATATC
26392799 TGTT
1 TGTT
26392803 GACCGATCGA
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (26 bp):
TGTTCTGGTGGCTCTGCCACAATATC
Found at i:26392922 original size:22 final size:22
Alignment explanation
Indices: 26392890--26392948 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
26392880 CCCGTTATTA
*
26392890 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
26392912 ATGGCTTTGTGCCATCTTGATT
1 ATGGCTTTGTGCCAACCTAAAT
*
26392934 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
26392949 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:26393150 original size:26 final size:26
Alignment explanation
Indices: 26393116--26393185 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
26393106 GTGGGTTTGC
* *
26393116 CACATTATCTGATTCTGGTGGCTCTG-
1 CACAATATCTG-TTCTGGTGACTCTGT
26393142 CACAATATCTGTATCTGGTGACTCTGT
1 CACAATATCTGT-TCTGGTGACTCTGT
* *
26393169 TACGATATCTGTTCTGG
1 CACAATATCTGTTCTGG
26393186 CAGCCATGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 27 0.71
27 10 0.26
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
CACAATATCTGTTCTGGTGACTCTGT
Found at i:26393339 original size:6 final size:6
Alignment explanation
Indices: 26393328--26393489 Score: 147
Period size: 6 Copynumber: 26.8 Consensus size: 6
26393318 CTGTCACTTA
* * *
26393328 ATTCTG ATTCTG ATTCTG ATTTTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * * *
26393376 ATTCTG -TTATTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTTTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
26393425 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
26393473 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
26393490 CATTTTGGTT
Statistics
Matches: 127, Mismatches: 16, Indels: 26
0.75 0.09 0.15
Matches are distributed among these distances:
5 10 0.08
6 107 0.84
7 8 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:26393444 original size:85 final size:85
Alignment explanation
Indices: 26393303--26393489 Score: 320
Period size: 85 Copynumber: 2.2 Consensus size: 85
26393293 TTGCATTCAC
* * *
26393303 ATTCTGATTTTGATTCTGTCACTTAATTCTGATTCTGATTCTGATTTTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
*
26393368 TGATTCTGATTCTGTTATTG
66 TGATTCTGATTCTGTTACTG
* *
26393388 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTTTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
26393453 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
26393473 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
26393490 CATTTTGGTT
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.51
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:26393510 original size:30 final size:30
Alignment explanation
Indices: 26393303--26393489 Score: 235
Period size: 30 Copynumber: 6.4 Consensus size: 30
26393293 TTGCATTCAC
* *
26393303 ATTCTGATTTTGATTCTGTCACTTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
* *
26393334 ATTCTGATTCTGATTTTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
26393364 ATTCTGATTCTGATTCTG-T--T-A-T-TG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
26393388 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
26393419 ATTTTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
26393449 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
26393479 ATTCTGATTCT
1 ATTCTGATTCT
26393490 CATTTTGGTT
Statistics
Matches: 136, Mismatches: 11, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
24 20 0.15
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 69 0.51
31 41 0.30
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.51
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:26395518 original size:27 final size:27
Alignment explanation
Indices: 26395488--26395564 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
26395478 CGACTTGTAA
26395488 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAG
****
26395515 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
***
26395542 AATTACCATTTTACCCTCGATTT
1 AATTACCAAAGTACCCTCGATTT
26395565 TTAAAATTAC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.05
27 42 0.95
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:26395546 original size:54 final size:54
Alignment explanation
Indices: 26395488--26395597 Score: 132
Period size: 54 Copynumber: 2.0 Consensus size: 54
26395478 CGACTTGTAA
*
26395488 AATTACCAAAGTACTCC-CGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAG
*** ** * *
26395542 AATTACCATTTTACCCTCGATTTTTAAAATTACTGTTTTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAG
26395596 AA
1 AA
26395598 ATGCCCTCGA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 2 0.04
54 45 0.96
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (54 bp):
AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAG
Found at i:26395572 original size:27 final size:27
Alignment explanation
Indices: 26395505--26395592 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
26395495 AAAGTACTCC
*
26395505 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
* *
26395532 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
** *
26395559 CGATTTTTAAAATTACTGTTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
26395586 CGATTTA
1 CGATTTA
26395593 TAGAAATGCC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAAAATTACCGTTTTACCCT
Found at i:26395869 original size:320 final size:320
Alignment explanation
Indices: 26395287--26395917 Score: 1208
Period size: 320 Copynumber: 2.0 Consensus size: 320
26395277 CTACGGGCCC
26395287 AATTGGATAAGTTGTTTGATTGTGTAGTAAATATTGGACTAGGCTAGGTGAATCGCATATCTGTG
1 AATTGGATAAGTTGTTTGATTGTGTAGTAAATATTGGACTAGGCTAGGTGAATCGCATATCTGTG
26395352 GCTAGGTTTGGGCTAAAAGGGCCACACGAGCCTGTGGGCCCATTTGGGCCGAGAATAGGCTTTAA
66 GCTAGGTTTGGGCTAAAAGGGCCACACGAGCCTGTGGGCCCATTTGGGCCGAGAATAGGCTTTAA
*
26395417 GCCCATTCGTATTGTTATCCATGTTTAGAATACTTTAGTTTTCCAATTACTGAAATGCCCTCGAC
131 GCCCATTCGTATTGTTATCCATGTTTAGAATACTTTAGTTTCCCAATTACTGAAATGCCCTCGAC
26395482 TTGTAAAATTACCAAAGTACTCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTA
196 TTGTAAAATTACCAAAGTACTCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTA
*
26395547 CCATTTTACCCTCGATTTTTAAAATTACTGTTTTACCCTCGATTTATAGAAATGCCCTCG
261 CCATTTTACCCTCGATTTTTAAAATTACTGTTTTACCCTCGATTTACAGAAATGCCCTCG
26395607 AATTGGATAAGTTGTTTGATTGTGTAGTAAATATTGGACTAGGCTAGGTGAATCGCATATCTGTG
1 AATTGGATAAGTTGTTTGATTGTGTAGTAAATATTGGACTAGGCTAGGTGAATCGCATATCTGTG
* *
26395672 GCTAGGTTTGGGCTAAAAGGGCTACACGAGCGTGTGGGCCCATTTGGGCCGAGAATAGGCTTTAA
66 GCTAGGTTTGGGCTAAAAGGGCCACACGAGCCTGTGGGCCCATTTGGGCCGAGAATAGGCTTTAA
*
26395737 GCCCATTCGTATTGTTATCCATGTTTAGAATACTTTAGTTTCCCAATTACTGAATTGCCCTCGAC
131 GCCCATTCGTATTGTTATCCATGTTTAGAATACTTTAGTTTCCCAATTACTGAAATGCCCTCGAC
*
26395802 TTGTAAAATTACCAAAGTACTCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTA
196 TTGTAAAATTACCAAAGTACTCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTA
26395867 CCATTTTACCCTCGATTTTTAAAATTACTGTTTTACCCTCGATTTACAGAA
261 CCATTTTACCCTCGATTTTTAAAATTACTGTTTTACCCTCGATTTACAGAA
26395918 TTACCGTTTT
Statistics
Matches: 305, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
320 305 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (320 bp):
AATTGGATAAGTTGTTTGATTGTGTAGTAAATATTGGACTAGGCTAGGTGAATCGCATATCTGTG
GCTAGGTTTGGGCTAAAAGGGCCACACGAGCCTGTGGGCCCATTTGGGCCGAGAATAGGCTTTAA
GCCCATTCGTATTGTTATCCATGTTTAGAATACTTTAGTTTCCCAATTACTGAAATGCCCTCGAC
TTGTAAAATTACCAAAGTACTCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTA
CCATTTTACCCTCGATTTTTAAAATTACTGTTTTACCCTCGATTTACAGAAATGCCCTCG
Found at i:26396276 original size:27 final size:27
Alignment explanation
Indices: 26395823--26396288 Score: 598
Period size: 27 Copynumber: 17.3 Consensus size: 27
26395813 CCAAAGTACT
26395823 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
26395850 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
26395877 CTCGATTTTTAAAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
26395904 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
26395931 CTCGATTTGTAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
26395958 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
26395985 CTC-AGTTTACAGAATTACTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
26396012 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* ** * **
26396039 TTCGATTTGTAAAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
26396066 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
26396093 CTCAATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
26396120 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
26396147 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
26396174 CTCGATTTGTAAAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
26396201 CTTGATTTACAGAATTACTAG-TTTACC
1 CTCGATTTACAGAATTAC-CGTTTTACC
*
26396228 CTC-AGTTTACAGAATTATCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
26396255 CTCGATTTACAGAATTACCGTTTTAGC
1 CTCGATTTACAGAATTACCGTTTTACC
*
26396282 CTTGATT
1 CTCGATT
26396289 GTGAAATTAC
Statistics
Matches: 379, Mismatches: 52, Indels: 16
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.01
27 371 0.98
28 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:26396331 original size:27 final size:27
Alignment explanation
Indices: 26396293--26396488 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
26396283 TTGATTGTGA
*
26396293 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
26396320 AATTTTCGAAATACACCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26396347 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26396374 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
26396401 AATTATCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26396428 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26396455 AATTACCGAGATACCCGTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26396482 AATTACC
1 AATTACC
26396489 ATTTTGCCCC
Statistics
Matches: 140, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26396725 original size:27 final size:26
Alignment explanation
Indices: 26396687--26396769 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
26396677 CGGAGGAAGC
*
26396687 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
26396714 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
26396740 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
26396767 GTT
1 GTT
26396770 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:26396891 original size:22 final size:22
Alignment explanation
Indices: 26396857--26396915 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
26396847 CCCATTATTA
* *
26396857 ATGGCTCTATGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * *
26396879 ATGGCTTTGTGCCATCTTAACT
1 ATGGCTTTGTGCCAACCTAAAT
*
26396901 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
26396916 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:26397118 original size:27 final size:27
Alignment explanation
Indices: 26397098--26397153 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
26397088 TATCTGATTG
*
26397098 TGGTGGCTCTGCCACAATATCTGTATC
1 TGGTGACTCTGCCACAATATCTGTATC
* *
26397125 TGGTGACTCTGTCACGATATCTGT-TC
1 TGGTGACTCTGCCACAATATCTGTATC
26397151 TGG
1 TGG
26397154 CAGCCATGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (27 bp):
TGGTGACTCTGCCACAATATCTGTATC
Found at i:26397280 original size:6 final size:6
Alignment explanation
Indices: 26397271--26397457 Score: 163
Period size: 6 Copynumber: 30.8 Consensus size: 6
26397261 TTGCATTCAC
* *
26397271 ATTCTG ATTCTG ATTCTG -TTACGTA ATTCTG ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
26397320 -TTACTA ATACTG ATTCTG ATTTTG ATTCTG -TTATTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
26397368 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
26397417 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
26397458 CATTTTGGTT
Statistics
Matches: 147, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 12 0.08
6 121 0.82
7 10 0.07
8 4 0.03
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:26397412 original size:85 final size:85
Alignment explanation
Indices: 26397271--26397457 Score: 320
Period size: 85 Copynumber: 2.2 Consensus size: 85
26397261 TTGCATTCAC
* * *
26397271 ATTCTGATTCTGATTCTGTTACGTAATTCTGATTCTGATTCTGATTTTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
* *
26397336 TGATTTTGATTCTGTTATTG
66 TGATTCTGATTCTGTTACTG
*
26397356 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
26397421 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
26397441 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
26397458 CATTTTGGTT
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:26397478 original size:30 final size:30
Alignment explanation
Indices: 26397271--26397457 Score: 253
Period size: 30 Copynumber: 6.4 Consensus size: 30
26397261 TTGCATTCAC
26397271 ATTCTGATTCTGATTCTGTTACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
* *
26397302 ATTCTGATTCTGATTTTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
26397332 ATTCTGATTTTGATTCTG-T--T-A-T-TG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
26397356 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
26397387 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
26397417 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
26397447 ATTCTGATTCT
1 ATTCTGATTCT
26397458 CATTTTGGTT
Statistics
Matches: 138, Mismatches: 9, Indels: 19
0.83 0.05 0.11
Matches are distributed among these distances:
24 19 0.14
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 69 0.50
31 44 0.32
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:26411252 original size:11 final size:11
Alignment explanation
Indices: 26411236--26411260 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26411226 ATATGATATT
26411236 TTATTATTTTA
1 TTATTATTTTA
26411247 TTATTATTTTA
1 TTATTATTTTA
26411258 TTA
1 TTA
26411261 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:26411519 original size:16 final size:18
Alignment explanation
Indices: 26411489--26411526 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
26411479 CAAGGAATAG
26411489 AAGCTGGAGGAGAGAGAA
1 AAGCTGGAGGAGAGAGAA
26411507 AAGCTGGAGGAGAGAGAA
1 AAGCTGGAGGAGAGAGAA
26411525 AA
1 AA
26411527 TCAAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.05, G:0.42, T:0.05
Consensus pattern (18 bp):
AAGCTGGAGGAGAGAGAA
Found at i:26433753 original size:57 final size:57
Alignment explanation
Indices: 26433623--26433765 Score: 164
Period size: 57 Copynumber: 2.5 Consensus size: 57
26433613 CTCATTATAG
** * * * *
26433623 AAAGGATTTAGCCCAGACAGGTAATCCTGATATAACTCCTCTCGGGCATATGATACA
1 AAAGGATTTAGCCTGGACTGGTAATCCTAATATAACTCCTCTCGAGAATATGATACA
* * *
26433680 ATAAGGATTTAACCTGGACTGGTAATCCTAAT-TAAGCTCTTCT-GAGAATATGTTACA
1 A-AAGGATTTAGCCTGGACTGGTAATCCTAATATAA-CTCCTCTCGAGAATATGATACA
26433737 TAAAGGATTTAGCCTGGACTGGTAATCCT
1 -AAAGGATTTAGCCTGGACTGGTAATCCT
26433766 GTAATATGAT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
57 41 0.56
58 32 0.44
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (57 bp):
AAAGGATTTAGCCTGGACTGGTAATCCTAATATAACTCCTCTCGAGAATATGATACA
Found at i:26444189 original size:21 final size:22
Alignment explanation
Indices: 26444150--26444190 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26444140 GTTAAAATGT
26444150 CACACGGGCATGTTGCCCCTCC
1 CACACGGGCATGTTGCCCCTCC
*
26444172 CACACGGGCGTG-TGCCCCT
1 CACACGGGCATGTTGCCCCT
26444191 GTGTTAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGGGCATGTTGCCCCTCC
Found at i:26450907 original size:45 final size:49
Alignment explanation
Indices: 26450793--26450919 Score: 140
Period size: 50 Copynumber: 2.7 Consensus size: 49
26450783 GGGTCAGGTA
* * *
26450793 CCGATGCCATGTCCCAGACATGGTCTTACACAAGTTCTAGCATATCTGTG
1 CCGATGACATGTCCCAGACATGGTCTTACAC-TGTACTAGCATATCTGTG
* * *
26450843 CCGATGTCATGTCCTAGACATGGTCTTACACTG-AC-A-CATCT-TGTAG
1 CCGATGACATGTCCCAGACATGGTCTTACACTGTACTAGCATATCTGT-G
26450889 CCGAT-ACATGTCCCAGACAT-GTCTTACACTG
1 CCGATGACATGTCCCAGACATGGTCTTACACTG
26450920 GCTTATGTCT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
44 11 0.16
45 16 0.23
46 10 0.14
47 1 0.01
48 1 0.01
49 1 0.01
50 29 0.42
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
CCGATGACATGTCCCAGACATGGTCTTACACTGTACTAGCATATCTGTG
Found at i:26468711 original size:197 final size:197
Alignment explanation
Indices: 26468376--26468760 Score: 621
Period size: 197 Copynumber: 2.0 Consensus size: 197
26468366 AAGGAATATT
*
26468376 CATGTATTGACTTACTTTGTTCACTGTAAGAAATATCTAGTCTGGTAAGACAAACATATTGTAAG
1 CATGTATTGACTTACTTTGTTCACTGTAAGAAATATCTAGTCTGGTAAGACAAACATATCGTAAG
* * *
26468441 GTACCAAGAACTTTTCCATATAGATGCAATCTGAAAATAGTTGACCATCAAAAACATAGAGTTTA
66 GTACCAACAACTTTTCCATACAGATGCAATCTAAAAATAGTTGACCATCAAAAACATAGAGTTTA
* * *
26468506 GGCCATAAAAGGCCTCAAGTATGGAAAACAATTTTTGAGCATTTAAAGGCCTCAAGTAAGTCAAT
131 GGCCATAAAAGGCCTCAAGTATGAAAAACAATTTTTGAGCATTAAAAGGCATCAAGTAAGTCAAT
26468571 AG
196 AG
* *
26468573 CATGTATTGACTTATTTTGTTCACTGTAAGAAATATCTAGTCTGGTAAGACAAACATATCGTAGG
1 CATGTATTGACTTACTTTGTTCACTGTAAGAAATATCTAGTCTGGTAAGACAAACATATCGTAAG
* * *
26468638 GTACCAACAACTTTTCCATACAGATGCAATCTAAAAATGGTTG-CCAATCAATAGCAGT-GAGTT
66 GTACCAACAACTTTTCCATACAGATGCAATCTAAAAATAGTTGACC-ATCAAAAACA-TAGAGTT
*
26468701 TAGGCCATAAAAGGCTTCAAGTATGAAAAACAATTTTTGAGCATTAAAAGGCATCAAGTA
129 TAGGCCATAAAAGGCCTCAAGTATGAAAAACAATTTTTGAGCATTAAAAGGCATCAAGTA
26468761 TGGAAAACAG
Statistics
Matches: 173, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
196 2 0.01
197 170 0.98
198 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (197 bp):
CATGTATTGACTTACTTTGTTCACTGTAAGAAATATCTAGTCTGGTAAGACAAACATATCGTAAG
GTACCAACAACTTTTCCATACAGATGCAATCTAAAAATAGTTGACCATCAAAAACATAGAGTTTA
GGCCATAAAAGGCCTCAAGTATGAAAAACAATTTTTGAGCATTAAAAGGCATCAAGTAAGTCAAT
AG
Found at i:26469720 original size:43 final size:44
Alignment explanation
Indices: 26469654--26469741 Score: 151
Period size: 43 Copynumber: 2.0 Consensus size: 44
26469644 ATTCTATACA
*
26469654 ATCTTTATCTTTTTAGGATTTATACTATTTACCCTGAAAACTCT
1 ATCTTTATCTTTTTAAGATTTATACTATTTACCCTGAAAACTCT
*
26469698 ATCTTTATC-TTTTAAGATTTATACTATTTACCCTGGAAACTCT
1 ATCTTTATCTTTTTAAGATTTATACTATTTACCCTGAAAACTCT
26469741 A
1 A
26469742 GTTTTACTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 33 0.79
44 9 0.21
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.47
Consensus pattern (44 bp):
ATCTTTATCTTTTTAAGATTTATACTATTTACCCTGAAAACTCT
Found at i:26472054 original size:21 final size:21
Alignment explanation
Indices: 26472030--26472070 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
26472020 ATGTTTCACA
26472030 TTTGTTTCTTTATGTTCTTCT
1 TTTGTTTCTTTATGTTCTTCT
*
26472051 TTTGTTTCTTTGTGTTCTTC
1 TTTGTTTCTTTATGTTCTTC
26472071 CATACGTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.02, C:0.15, G:0.12, T:0.71
Consensus pattern (21 bp):
TTTGTTTCTTTATGTTCTTCT
Found at i:26477446 original size:21 final size:20
Alignment explanation
Indices: 26477422--26477490 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
26477412 AATGATAATA
26477422 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
26477443 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
26477462 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
26477483 ATAATAAT
1 ATAATAAT
26477491 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:26484969 original size:15 final size:14
Alignment explanation
Indices: 26484951--26484981 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
26484941 TTAATTTATT
26484951 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
26484966 TAATAATAATCTAA
1 TAATAATAATCTAA
26484980 TA
1 TA
26484982 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:26491868 original size:22 final size:22
Alignment explanation
Indices: 26491843--26491887 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
26491833 ATGACACATA
26491843 ACAAAATGACCAAGTCCCCTAT
1 ACAAAATGACCAAGTCCCCTAT
*
26491865 ACAAAATGACTAAGTCCCCTAT
1 ACAAAATGACCAAGTCCCCTAT
26491887 A
1 A
26491888 TATGCTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.29, G:0.09, T:0.20
Consensus pattern (22 bp):
ACAAAATGACCAAGTCCCCTAT
Found at i:26492652 original size:15 final size:16
Alignment explanation
Indices: 26492627--26492656 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26492617 ATACATATAT
26492627 TAAAAACATAAAAAAA
1 TAAAAACATAAAAAAA
26492643 TAAAAA-ATAAAAAA
1 TAAAAACATAAAAAA
26492657 GGAGAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (16 bp):
TAAAAACATAAAAAAA
Found at i:26493290 original size:23 final size:26
Alignment explanation
Indices: 26493256--26493306 Score: 72
Period size: 23 Copynumber: 2.1 Consensus size: 26
26493246 TGCTATTACA
26493256 TTTATTACTG-T-TATTATTA-TATT
1 TTTATTACTGTTCTATTATTATTATT
*
26493279 TTTATTAGTGTTCTATTATTATTATT
1 TTTATTACTGTTCTATTATTATTATT
26493305 TT
1 TT
26493307 ATTTGATGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 9 0.38
24 1 0.04
25 8 0.33
26 6 0.25
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.67
Consensus pattern (26 bp):
TTTATTACTGTTCTATTATTATTATT
Found at i:26493499 original size:3 final size:3
Alignment explanation
Indices: 26493491--26493529 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
26493481 TGTATTTCTA
* * *
26493491 TAT TAT TAT TAT TAT TAT TGT CAC TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26493530 ATAGTAGTGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:26493708 original size:12 final size:12
Alignment explanation
Indices: 26493691--26493715 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26493681 GTATTATGTT
26493691 TTTTTAATACCA
1 TTTTTAATACCA
26493703 TTTTTAATACCA
1 TTTTTAATACCA
26493715 T
1 T
26493716 GCATGTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTTAATACCA
Found at i:26506553 original size:15 final size:15
Alignment explanation
Indices: 26506533--26506576 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
26506523 TAGTGAAATC
26506533 ATTAATTATTTAAAA
1 ATTAATTATTTAAAA
*
26506548 ATTAATTAATT-AAA
1 ATTAATTATTTAAAA
*
26506562 ATTACAATATTTAAA
1 ATTA-ATTATTTAAA
26506577 CTTATTAGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 7 0.29
15 15 0.62
16 2 0.08
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
ATTAATTATTTAAAA
Found at i:26516081 original size:13 final size:13
Alignment explanation
Indices: 26516055--26516135 Score: 81
Period size: 13 Copynumber: 6.2 Consensus size: 13
26516045 ACCATTACAA
* *
26516055 AAATGGTAAAATG
1 AAATGGTTATATG
* *
26516068 AAATGTTTAGATG
1 AAATGGTTATATG
*
26516081 AAATGGTTATATA
1 AAATGGTTATATG
* *
26516094 AAATGATTACATG
1 AAATGGTTATATG
*
26516107 AAATGGTTAAATG
1 AAATGGTTATATG
*
26516120 AATTGGTTATATG
1 AAATGGTTATATG
26516133 AAA
1 AAA
26516136 ATAGATGTAT
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 54 1.00
ACGTcount: A:0.46, C:0.01, G:0.20, T:0.33
Consensus pattern (13 bp):
AAATGGTTATATG
Found at i:26516133 original size:26 final size:26
Alignment explanation
Indices: 26516055--26516135 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
26516045 ACCATTACAA
* * *
26516055 AAATGGTAAAATGAAATGTTTAGATG
1 AAATGGTTAAATGAAATGATTACATG
* *
26516081 AAATGGTTATATAAAATGATTACATG
1 AAATGGTTAAATGAAATGATTACATG
* * *
26516107 AAATGGTTAAATGAATTGGTTATATG
1 AAATGGTTAAATGAAATGATTACATG
26516133 AAA
1 AAA
26516136 ATAGATGTAT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.46, C:0.01, G:0.20, T:0.33
Consensus pattern (26 bp):
AAATGGTTAAATGAAATGATTACATG
Found at i:26521706 original size:21 final size:22
Alignment explanation
Indices: 26521676--26521716 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
26521666 TCTTGTAGTT
26521676 TTAATTAGCTCAATTAAGCTCA
1 TTAATTAGCTCAATTAAGCTCA
26521698 TTAA-TAGCTCAATTAAGCT
1 TTAATTAGCTCAATTAAGCT
26521717 GAGTGTGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (22 bp):
TTAATTAGCTCAATTAAGCTCA
Found at i:26524575 original size:43 final size:43
Alignment explanation
Indices: 26524528--26524681 Score: 290
Period size: 43 Copynumber: 3.6 Consensus size: 43
26524518 CGGCATTACG
26524528 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAA
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAA
26524571 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAA
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAA
* *
26524614 CCTGCCAGGCACGAAGGCCCGAATACACATCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAA
26524657 CCTGCTAGGCACGAAGGCCCGAATA
1 CCTGCTAGGCACGAAGGCCCGAATA
26524682 TAATACCAGC
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 108 1.00
ACGTcount: A:0.31, C:0.35, G:0.25, T:0.09
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAA
Found at i:26524722 original size:38 final size:38
Alignment explanation
Indices: 26524674--26524875 Score: 269
Period size: 38 Copynumber: 5.3 Consensus size: 38
26524664 GGCACGAAGG
* * * *
26524674 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
26524712 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** * **
26524750 CCCGGATATTTTACCAGCACGAAGCCTGTAGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTG-CGGGATTTAA
*
26524789 GCCAGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
26524828 CCCGGATATAATACCAACACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
26524866 CCCGGATATA
1 CCCGGATATA
26524876 CATCGAATAT
Statistics
Matches: 142, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
38 104 0.73
39 13 0.09
40 25 0.18
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:26534454 original size:24 final size:24
Alignment explanation
Indices: 26534399--26534490 Score: 71
Period size: 26 Copynumber: 3.6 Consensus size: 24
26534389 TATATATATA
*
26534399 ATTTAT-TTATTTTTAAAAAAACT
1 ATTTATATTATTATTAAAAAAACT
* *
26534422 ATACATATATTATTATTAAAAATACT
1 AT--TTATATTATTATTAAAAAAACT
*
26534448 ATTTATATGT-TTATATAAAAAAATTT
1 ATTTATAT-TATTAT-TAAAAAAA-CT
26534474 ATTTATCATATATTATT
1 ATTTAT-AT-TATTATT
26534491 TTCCTATATA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
23 2 0.04
24 9 0.17
25 11 0.20
26 24 0.44
27 4 0.07
28 4 0.07
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.50
Consensus pattern (24 bp):
ATTTATATTATTATTAAAAAAACT
Found at i:26534559 original size:22 final size:24
Alignment explanation
Indices: 26534505--26534563 Score: 79
Period size: 22 Copynumber: 2.5 Consensus size: 24
26534495 TATATATTTA
26534505 TATTATATTTTATTATATAACATT
1 TATTATATTTTATTATATAACATT
*
26534529 TATTATATTTT-TTATAT-ATA-T
1 TATTATATTTTATTATATAACATT
26534550 TACTTATATTTTAT
1 TA-TTATATTTTAT
26534564 ATGTTATGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
21 3 0.09
22 11 0.34
23 7 0.22
24 11 0.34
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATATTTTATTATATAACATT
Found at i:26547132 original size:206 final size:206
Alignment explanation
Indices: 26546767--26547695 Score: 1441
Period size: 206 Copynumber: 4.5 Consensus size: 206
26546757 GCAGATCTGG
* ** *
26546767 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGAGTACAAGGAGCAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCT
* * *
26546832 GATTTGG-TTTC-CGCATGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTT
65 GATTTGGCTTTCACG--TGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
*
26546895 AGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAAACACATAGCAGATCCAACC
128 AGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACC
26546960 TTCAGATGTTTATA
193 TTCAGATGTTTATA
*
26546974 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTG
*
26547039 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAAA
66 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
26547104 GAACAAATCAAAGTTTGGCGTTTCCATATTCGACGGAGGGCAGGCACATAGTAGATCCAACCTTC
131 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTTC
*
26547169 AGATATTTATA
196 AGATGTTTATA
* *
26547180 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGAGCTTACAAGGAGAAAAAAT-AAAGACATAGC
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAG--AAAATCGAAGACATAGC
26547244 TGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
64 TGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* * *
26547309 GAGAACAAATCAAAGTTTGGCGTCTCCAAATTCGATGGAGGGCAGACACATAGTAGATCCAACCT
129 GAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCT
26547374 TCAGATGTTTATA
194 TCAGATGTTTATA
26547387 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTG
*
26547452 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATAATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * * * *
26547517 GAACAAATCGAAGTTTGGCGTTTCCATATTCGACAGAGAGCAGACACATAACAGATCTAACTTTC
131 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTTC
* * *
26547582 AGACGATTAGA
196 AGATGTTTATA
* * * * * * *
26547593 CTGAAGCAAATCCAAGATGATTTGGCATCCTTGTGGTCACAATGAGAAAATCGAAGACATAGCAG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTG
* *
26547658 ATTTGGCTTTCACGTGTTTACATTGAAGCAAATCTAAG
66 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAG
26547696 CATCTCTATA
Statistics
Matches: 671, Mismatches: 46, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
205 5 0.01
206 457 0.68
207 203 0.30
208 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTTC
AGATGTTTATA
Found at i:26547534 original size:413 final size:412
Alignment explanation
Indices: 26546767--26547695 Score: 1470
Period size: 413 Copynumber: 2.2 Consensus size: 412
26546757 GCAGATCTGG
* *
26546767 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGAGTACAAGGAGCAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGATTACAAGGAGAAAATCGAAGACATAGCT
* * *
26546832 GATTTGG-TTTC-CGCATGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTT
65 GATTTGGCTTTCACG--TGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
*
26546895 AGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAAACACATAGCAGATCCAACC
128 AGAGAACAAATCAAAGTTTGGCGTCTCCAAATTCGACGGAGGGCAAACACATAGCAGATCCAACC
*
26546960 TTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAAT
193 TTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAAT
*
26547025 CGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATC
258 CGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATAATTTGGCATC
* * * *
26547090 TCTGTATTGTCAAAGAACAAATCAAAGTTTGGCGTTTCCATATTCGACGGAGGGCAGGCACATAG
323 TCTGTATTGTCAAAGAACAAATCAAAGTTTGGCGTTTCCATATTCGACAGAGAGCAGACACATAA
* * *
26547155 TAGATCCAACCTTCAGA-TATTTATA
388 CAGATCCAACCTTCAGACGA-TTAGA
* * * *
26547180 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGAGCTTACAAGGAGAAAAAAT-AAAGACATAGC
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGATTACAAGGAG--AAAATCGAAGACATAGC
26547244 TGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
64 TGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* * *
26547309 GAGAACAAATCAAAGTTTGGCGTCTCCAAATTCGATGGAGGGCAGACACATAGTAGATCCAACCT
129 GAGAACAAATCAAAGTTTGGCGTCTCCAAATTCGACGGAGGGCAAACACATAGCAGATCCAACCT
26547374 TCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATC
194 TCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATC
26547439 GAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATAATTTGGCATCT
259 GAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATAATTTGGCATCT
* *
26547504 CTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTTTCCATATTCGACAGAGAGCAGACACATAAC
324 CTGTATTGTCAAAGAACAAATCAAAGTTTGGCGTTTCCATATTCGACAGAGAGCAGACACATAAC
* *
26547569 AGATCTAACTTTCAGACGATTAGA
389 AGATCCAACCTTCAGACGATTAGA
* * * * * *
26547593 CTGAAGCAAATCCAAGATGATTTGGCATCCTTGTGGTCACAATGAGAAAATCGAAGACATAGCAG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGATTACAAGGAGAAAATCGAAGACATAGCTG
* *
26547658 ATTTGGCTTTCACGTGTTTACATTGAAGCAAATCTAAG
66 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAG
26547696 CATCTCTATA
Statistics
Matches: 473, Mismatches: 37, Indels: 13
0.90 0.07 0.02
Matches are distributed among these distances:
411 5 0.01
412 82 0.17
413 375 0.79
414 9 0.02
415 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (412 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGATTACAAGGAGAAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCAAAGTTTGGCGTCTCCAAATTCGACGGAGGGCAAACACATAGCAGATCCAACCTTC
AGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGA
AGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATAATTTGGCATCTCT
GTATTGTCAAAGAACAAATCAAAGTTTGGCGTTTCCATATTCGACAGAGAGCAGACACATAACAG
ATCCAACCTTCAGACGATTAGA
Found at i:26549445 original size:22 final size:22
Alignment explanation
Indices: 26549404--26549463 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
26549394 TTATTTACCA
**
26549404 TATATTATTTTCCTATATAT-T
1 TATATTATTTTTATATATATAT
26549425 TATATTATATTTTATATATATAT
1 TATATTAT-TTTTATATATATAT
*
26549448 TA-CTTATCTTTTATAT
1 TATATTAT-TTTTATAT
26549464 GTTATGTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 8 0.24
22 22 0.67
23 3 0.09
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.62
Consensus pattern (22 bp):
TATATTATTTTTATATATATAT
Found at i:26550963 original size:23 final size:21
Alignment explanation
Indices: 26550912--26550973 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 21
26550902 TCAAAATGTG
* *
26550912 TAATATAAGTAAAGTAATTAT
1 TAATATAAGTAAAATAAGTAT
26550933 TGACATATAAGTAAAAATAAGTAT
1 T-A-ATATAAGT-AAAATAAGTAT
26550957 ATAATATAAGTTAAAAT
1 -TAATATAAG-TAAAAT
26550974 CTTTAATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
21 1 0.03
22 1 0.03
23 20 0.59
24 11 0.32
25 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.34
Consensus pattern (21 bp):
TAATATAAGTAAAATAAGTAT
Found at i:26551001 original size:17 final size:16
Alignment explanation
Indices: 26550979--26551015 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
26550969 AAAATCTTTA
*
26550979 ATAATAATAT-ATAG-
1 ATAAAAATATAATAGT
26550993 ATAAAAATATAATAGT
1 ATAAAAATATAATAGT
26551009 ATAAAAA
1 ATAAAAA
26551016 ATGACATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 9 0.45
15 4 0.20
16 7 0.35
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (16 bp):
ATAAAAATATAATAGT
Found at i:26551111 original size:37 final size:33
Alignment explanation
Indices: 26551069--26551163 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 33
26551059 TATATAATAT
26551069 ATATAAATAATTAATAAATATATAATACAAGTAAAA
1 ATATAAATAA-TAATAAATA-ATAATA-AAGTAAAA
**
26551105 AGTATAAATAATAATGTAAATAATAATAATTTAAAA
1 A-TATAAATAATAA--TAAATAATAATAAAGTAAAA
26551141 ATATATAATAAATAAT-AATAATA
1 ATATA-AAT-AATAATAAATAATA
26551164 TGAAATAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
34 7 0.13
35 5 0.10
36 14 0.27
37 20 0.38
38 6 0.12
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (33 bp):
ATATAAATAATAATAAATAATAATAAAGTAAAA
Found at i:26551131 original size:15 final size:14
Alignment explanation
Indices: 26551111--26551173 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 14
26551101 AAAAAGTATA
26551111 AATAATAATGTAAAT
1 AATAATAAT-TAAAT
26551126 AATAATAATTTAAA-
1 AATAATAA-TTAAAT
26551140 AATATATAA-TAAAT
1 AATA-ATAATTAAAT
26551154 AATAATAATATGAAAT
1 AATAATAAT-T-AAAT
26551170 AATA
1 AATA
26551174 TAAGGTTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
13 8 0.19
14 8 0.19
15 17 0.40
16 9 0.21
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
AATAATAATTAAAT
Found at i:26551153 original size:28 final size:28
Alignment explanation
Indices: 26551059--26551162 Score: 85
Period size: 28 Copynumber: 3.8 Consensus size: 28
26551049 GGTACATATG
*
26551059 TATATAATATAT-ATAAATAA-TTAATAAA
1 TATATAATAAATAAT-AATAATTTAA-AAA
* *
26551087 TATATAATACAAGTAA-AA-AGTATAAATAA
1 TATATAATA-AA-TAATAATAATTTAAA-AA
*
26551116 TA-AT-GTAAATAATAATAATTTAAAAA
1 TATATAATAAATAATAATAATTTAAAAA
26551142 TATATAATAAATAATAATAAT
1 TATATAATAAATAATAATAAT
26551163 ATGAAATAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
25 3 0.05
26 8 0.13
27 10 0.17
28 27 0.45
29 10 0.17
30 1 0.02
31 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.35
Consensus pattern (28 bp):
TATATAATAAATAATAATAATTTAAAAA
Found at i:26551321 original size:20 final size:19
Alignment explanation
Indices: 26551293--26551334 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
26551283 AAGAAGGTAT
26551293 TAAGTAAT-ATAATAAAATA
1 TAAGTAATAAT-ATAAAATA
26551312 TAAGTAAATAATATAAAATA
1 TAAGT-AATAATATAAAATA
26551332 TAA
1 TAA
26551335 TACATATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 14 0.67
21 2 0.10
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (19 bp):
TAAGTAATAATATAAAATA
Found at i:26553506 original size:204 final size:204
Alignment explanation
Indices: 26553017--26553563 Score: 801
Period size: 205 Copynumber: 2.7 Consensus size: 204
26553007 TCTGAAGGTG
* * *
26553017 AGATCTGCTACGTATCTGCTCCCCATTGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGACAA
1 AGATCTGCTATGTGTCTGCTCCCCATTGAAGTGGAGATGCCAGACTTCGATTTGATCTCTGACAA
26553082 TACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATG
66 TACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATG
*
26553147 TCTTCGATTTAATCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTCCAGATAAACAT
131 TCTTCGATTTAATCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTACTCCAGATAAACAT
26553212 ATGAAGGCC
196 ATGAAGGCC
* * ** * * * *
26553221 AGATCTGCTATGTGTCTGCTCTCTACCGAATATGGAGACGCCAAACTTCGATTTGACCTCTGACA
1 AGATCTGCTATGTGTCTGCTCCCCATTGAA-GTGGAGATGCCAGACTTCGATTTGATCTCTGACA
* * *
26553286 ACACAGAGATGCCAAATCATCTTAG-TTTGCCTCATCGTAAGCACGTGAAAGCCAAAATCAGCTA
65 ATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCC-AAATCAGCTA
** * * *
26553350 TGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAGA
129 TGTCTTCGATTTAATCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTACTCCAG-ATAAA
* ***
26553415 CATCTGAAGTTT
193 CATATGAAGGCC
* *
26553427 GGATCTGCTATGTGTCTGC-CCCCATTGAAGTGGAGATGCCAGACTTCGATTTGTTCTCTGACAA
1 AGATCTGCTATGTGTCTGCTCCCCATTGAAGTGGAGATGCCAGACTTCGATTTGATCTCTGACAA
* *
26553491 TACAGAGATGCCAAATCATCTTAGATTTTCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
66 TACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATG
26553556 TCTTCGAT
131 TCTTCGAT
26553564 CTACTCTCCG
Statistics
Matches: 300, Mismatches: 39, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
204 123 0.41
205 147 0.49
206 30 0.10
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (204 bp):
AGATCTGCTATGTGTCTGCTCCCCATTGAAGTGGAGATGCCAGACTTCGATTTGATCTCTGACAA
TACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATG
TCTTCGATTTAATCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTACTCCAGATAAACAT
ATGAAGGCC
Found at i:26553877 original size:132 final size:132
Alignment explanation
Indices: 26553623--26553903 Score: 431
Period size: 132 Copynumber: 2.1 Consensus size: 132
26553613 CTTTGACAAT
* *
26553623 ACAGAGATGCCAAATCTGCTATCTTTAACTTGTTCCCTATAAACACAGGGATACCATGCTGAAAT
1 ACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATACCATGCTGAAAT
* * * * *
26553688 CCTCGATCTGCTTCGCTGTAAGCACAAGAGTGTCAGATCTATTATTTTCGATTTGTTCCCTATAA
66 CCTCCATCTGCTTCGCTGTAAGCACAAGAATGTAAGATCTACTATTTTCGATCTGTTCCCTATAA
26553753 AC
131 AC
*
26553755 ACAGGGATGCCAAATCTGCTATCTTCAACTTGCTT-CCTATAAACACAGGGATGCCATGCTGAAA
1 ACAGGGATGCCAAATCTGCTATCTTCAACTTG-TTCCCTATAAACACAGGGATACCATGCTGAAA
* * *
26553819 TCTTCCATCTGCTTCGCTGTAAGCACAGGAATGTAAGATCTGCTATCTTT-GATCTGTTCCCTAT
65 TCCTCCATCTGCTTCGCTGTAAGCACAAGAATGTAAGATCTACTAT-TTTCGATCTGTTCCCTAT
26553883 AAAC
129 AAAC
26553887 ACAGGGATGCCAAATCT
1 ACAGGGATGCCAAATCT
26553904 TGTTTCTTTG
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
132 131 0.96
133 5 0.04
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (132 bp):
ACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATACCATGCTGAAAT
CCTCCATCTGCTTCGCTGTAAGCACAAGAATGTAAGATCTACTATTTTCGATCTGTTCCCTATAA
AC
Found at i:26553917 original size:44 final size:45
Alignment explanation
Indices: 26553579--26553903 Score: 171
Period size: 44 Copynumber: 7.4 Consensus size: 45
26553569 CTCCGCCAAT
* * * * *
26553579 ACAGAGATGCCAAATCTGGTATCTTTGATCTGC-T--CTTTGACAAT
1 ACAGGGATGCCAAATCTGCTATCTTTCATCTGCTTCCCTAT-A-AAC
* *
26553623 ACAGAGATGCCAAATCTGCTATCTTT-AACTTG-TTCCCTATAAAC
1 ACAGGGATGCCAAATCTGCTATCTTTCATC-TGCTTCCCTATAAAC
* ** * * * *
26553667 ACAGGGATACC--ATGCTGAAATC-CTCGATCTGCTTCGCTGTAAGC
1 ACAGGGATGCCAAAT-CTGCTATCTTTC-ATCTGCTTCCCTATAAAC
* * * ** *
26553711 ACA-AGAGTGTCAGATCTATTAT-TTTCGATTTG-TTCCCTATAAAC
1 ACAGGGA-TGCCAAATCTGCTATCTTTC-ATCTGCTTCCCTATAAAC
*
26553755 ACAGGGATGCCAAATCTGCTATC-TTCAACTTGCTT-CCTATAAAC
1 ACAGGGATGCCAAATCTGCTATCTTTCATC-TGCTTCCCTATAAAC
** * * * *
26553799 ACAGGGATGCC--ATGCTGAAATCTTCCATCTGCTTCGCTGTAAGC
1 ACAGGGATGCCAAAT-CTGCTATCTTTCATCTGCTTCCCTATAAAC
* * *
26553843 ACAGGAATG-TAAGATCTGCTATCTTTGATCTG-TTCCCTATAAAC
1 ACAGGGATGCCAA-ATCTGCTATCTTTCATCTGCTTCCCTATAAAC
26553887 ACAGGGATGCCAAATCT
1 ACAGGGATGCCAAATCT
26553904 TGTTTCTTTG
Statistics
Matches: 209, Mismatches: 49, Indels: 46
0.69 0.16 0.15
Matches are distributed among these distances:
42 5 0.02
43 24 0.11
44 142 0.68
45 31 0.15
46 7 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (45 bp):
ACAGGGATGCCAAATCTGCTATCTTTCATCTGCTTCCCTATAAAC
Found at i:26554765 original size:46 final size:46
Alignment explanation
Indices: 26554705--26554824 Score: 179
Period size: 46 Copynumber: 2.6 Consensus size: 46
26554695 TTTGACGTGA
* * * *
26554705 TGCCATAGTGTCTTTCAACTATGGTCTTACTCCTTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTA-TCCTTTTCATGTCACGT
*
26554751 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATCCTTTTCATGTCACGT
26554797 TGCCATGGTATCTTTCAACCATGGTCTT
1 TGCCATGGTATCTTTCAACCATGGTCTT
26554825 TGTAACACCC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
45 7 0.10
46 61 0.90
ACGTcount: A:0.17, C:0.24, G:0.16, T:0.43
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATCCTTTTCATGTCACGT
Found at i:26555662 original size:37 final size:37
Alignment explanation
Indices: 26555585--26555663 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
26555575 TTATTACGAA
* * * *
26555585 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATAGG
* *
26555622 GTCTTACCCGGACAAAATCCCCACACGTAGTCATATG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATAGG
26555659 GTCTT
1 GTCTT
26555664 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATAGG
Found at i:26555860 original size:47 final size:47
Alignment explanation
Indices: 26555782--26556089 Score: 517
Period size: 47 Copynumber: 6.6 Consensus size: 47
26555772 CCCTTCGGGA
* * * * * *
26555782 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26555829 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26555876 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26555923 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26555970 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26556017 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26556064 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
26556090 CACAATTATC
Statistics
Matches: 247, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 247 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26557295 original size:7 final size:7
Alignment explanation
Indices: 26557275--26557366 Score: 130
Period size: 7 Copynumber: 12.6 Consensus size: 7
26557265 TTTAAAATAG
26557275 AAACCCT
1 AAACCCT
26557282 AAAACCCT
1 -AAACCCT
26557290 AAACCCT
1 AAACCCT
26557297 AAACCCT
1 AAACCCT
26557304 AAAACCCT
1 -AAACCCT
26557312 AAACCCCT
1 AAA-CCCT
26557320 AAACCCT
1 AAACCCT
*
26557327 AAACCAT
1 AAACCCT
*
26557334 AACCCCT
1 AAACCCT
26557341 AAACCCT
1 AAACCCT
26557348 AAACCCT
1 AAACCCT
26557355 AAAACCCT
1 -AAACCCT
26557363 AAAC
1 AAAC
26557367 TCGAAAAAGG
Statistics
Matches: 77, Mismatches: 4, Indels: 7
0.88 0.05 0.08
Matches are distributed among these distances:
7 49 0.64
8 28 0.36
ACGTcount: A:0.46, C:0.41, G:0.00, T:0.13
Consensus pattern (7 bp):
AAACCCT
Found at i:26557295 original size:15 final size:14
Alignment explanation
Indices: 26557275--26557366 Score: 130
Period size: 15 Copynumber: 6.3 Consensus size: 14
26557265 TTTAAAATAG
26557275 AAACCCTAAAACCCT
1 AAACCCT-AAACCCT
26557290 AAACCCTAAACCCT
1 AAACCCTAAACCCT
26557304 AAAACCCTAAACCCCT
1 -AAACCCTAAA-CCCT
*
26557320 AAACCCTAAACCAT
1 AAACCCTAAACCCT
*
26557334 AACCCCTAAACCCT
1 AAACCCTAAACCCT
26557348 AAACCCTAAAACCCT
1 AAACCCT-AAACCCT
26557363 AAAC
1 AAAC
26557367 TCGAAAAAGG
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
14 28 0.40
15 38 0.54
16 4 0.06
ACGTcount: A:0.46, C:0.41, G:0.00, T:0.13
Consensus pattern (14 bp):
AAACCCTAAACCCT
Found at i:26566709 original size:15 final size:15
Alignment explanation
Indices: 26566679--26566709 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
26566669 ATTCTGGTTC
26566679 AATTTCATTTAGAAA
1 AATTTCATTTAGAAA
26566694 AATTT-ATTTAGAAA
1 AATTTCATTTAGAAA
26566708 AA
1 AA
26566710 GAATATCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTTCATTTAGAAA
Found at i:26570675 original size:23 final size:21
Alignment explanation
Indices: 26570624--26570685 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 21
26570614 TCAAAATGTG
* *
26570624 TAATATAAGTAAAGTAATTAT
1 TAATATAAGTAAAATAAGTAT
26570645 TGACATATAAGTAAAAATAAGTAT
1 T-A-ATATAAGT-AAAATAAGTAT
26570669 ATAATATAAGTTAAAAT
1 -TAATATAAG-TAAAAT
26570686 CTTTAATAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
21 1 0.03
22 1 0.03
23 20 0.59
24 11 0.32
25 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.34
Consensus pattern (21 bp):
TAATATAAGTAAAATAAGTAT
Found at i:26570718 original size:14 final size:16
Alignment explanation
Indices: 26570699--26570730 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26570689 TAATAACAAT
26570699 AATAT-ATAG-ATAAA
1 AATATAATAGTATAAA
26570713 AATATAATAGTATAAA
1 AATATAATAGTATAAA
26570729 AA
1 AA
26570731 AATGACATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 4 0.25
16 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (16 bp):
AATATAATAGTATAAA
Found at i:26570744 original size:18 final size:18
Alignment explanation
Indices: 26570723--26570761 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
26570713 AATATAATAG
26570723 TATAAAAAAATGACATAA
1 TATAAAAAAATGACATAA
* * *
26570741 TATAAAATAATTATATAA
1 TATAAAAAAATGACATAA
26570759 TAT
1 TAT
26570762 GAAGTTATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (18 bp):
TATAAAAAAATGACATAA
Found at i:26570831 original size:37 final size:33
Alignment explanation
Indices: 26570785--26570879 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 33
26570775 TATATAATAT
26570785 ATATAAATAATTAATAAATATATAATACAAGTAAAA
1 ATATAAATAA-TAATAAATA-ATAATA-AAGTAAAA
**
26570821 AGTATAAATAATAATGTAAATAATAATAATTTAAAA
1 A-TATAAATAATAA--TAAATAATAATAAAGTAAAA
26570857 ATATATAATAAATAAT-AATAATA
1 ATATA-AAT-AATAATAAATAATA
26570880 TGAAATAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
34 7 0.13
35 5 0.10
36 14 0.27
37 20 0.38
38 6 0.12
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (33 bp):
ATATAAATAATAATAAATAATAATAAAGTAAAA
Found at i:26570847 original size:15 final size:14
Alignment explanation
Indices: 26570827--26570889 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 14
26570817 AAAAAGTATA
26570827 AATAATAATGTAAAT
1 AATAATAAT-TAAAT
26570842 AATAATAATTTAAA-
1 AATAATAA-TTAAAT
26570856 AATATATAA-TAAAT
1 AATA-ATAATTAAAT
26570870 AATAATAATATGAAAT
1 AATAATAAT-T-AAAT
26570886 AATA
1 AATA
26570890 TAAGGTTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
13 8 0.19
14 8 0.19
15 17 0.40
16 9 0.21
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
AATAATAATTAAAT
Found at i:26570869 original size:28 final size:28
Alignment explanation
Indices: 26570775--26570878 Score: 85
Period size: 28 Copynumber: 3.8 Consensus size: 28
26570765 GTTATATATG
*
26570775 TATATAATATAT-ATAAATAA-TTAATAAA
1 TATATAATAAATAAT-AATAATTTAA-AAA
* *
26570803 TATATAATACAAGTAA-AA-AGTATAAATAA
1 TATATAATA-AA-TAATAATAATTTAAA-AA
*
26570832 TA-AT-GTAAATAATAATAATTTAAAAA
1 TATATAATAAATAATAATAATTTAAAAA
26570858 TATATAATAAATAATAATAAT
1 TATATAATAAATAATAATAAT
26570879 ATGAAATAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
25 3 0.05
26 8 0.13
27 10 0.17
28 27 0.45
29 10 0.17
30 1 0.02
31 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.35
Consensus pattern (28 bp):
TATATAATAAATAATAATAATTTAAAAA
Found at i:26575623 original size:56 final size:56
Alignment explanation
Indices: 26575537--26575656 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
26575527 ACAAGGGATG
26575537 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
26575593 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
26575649 ATGGGCAA
1 ATGGGCAA
26575657 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:26576871 original size:40 final size:39
Alignment explanation
Indices: 26576787--26577010 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 39
26576777 TCGAATGATG
* * * *
26576787 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
26576827 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
26576867 TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
26576906 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAA
* *
26576946 TCCGGGTTAAGTCCCGAAGGCATTTCTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
26576987 -CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGT-CCGAAGGCATTT
26577011 AAACGAGTAG
Statistics
Matches: 157, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.21
40 114 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26577004 original size:80 final size:80
Alignment explanation
Indices: 26576787--26577010 Score: 267
Period size: 80 Copynumber: 2.8 Consensus size: 80
26576777 TCGAATGATG
* * * *
26576787 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
* *
26576850 TTGTGTGAGATACTAAT
64 TTGTGCGAGATACTAAA
* * *
26576867 TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTA-AATCCGGGTTAAGTCTCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
26576930 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * *
26576946 TCCGGGTTAAGTCCCGAAGGCATTTCTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
26577011 AAACGAGTAG
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.02
79 57 0.47
80 61 0.50
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:26577018 original size:80 final size:79
Alignment explanation
Indices: 26576787--26577044 Score: 211
Period size: 79 Copynumber: 3.3 Consensus size: 79
26576777 TCGAATGATG
* * * * * *
26576787 TCCGGGCTAAGTCCCGAAGGCTTTG-TGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGCTGC-AAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
**** *
26576850 TTGTGTGAGATACTAAT
64 TTAAACGAG-TACTAAA
* * * *
26576867 TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCTCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGCTGCAAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
***
26576931 GTGCGAGTTACTAAA
66 AAACGAG-TACTAAA
* * *
26576946 TCCGGGTTAAGTCCCGAAGGCATTTCTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGCTGCAAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
26577010 TAAACGAGTAGCTATA
65 TAAACGAGTA-CTAAA
* *
26577026 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26577045 TACGTGATTT
Statistics
Matches: 150, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 78 0.52
80 69 0.46
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGCTGCAAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
AAACGAGTACTAAA
Found at i:26583579 original size:55 final size:56
Alignment explanation
Indices: 26583495--26583610 Score: 225
Period size: 55 Copynumber: 2.1 Consensus size: 56
26583485 ACAAGGGATG
26583495 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAA-AATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26583550 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26583606 ATGGG
1 ATGGG
26583611 AGATAAACTA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 40 0.67
56 20 0.33
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:26584870 original size:77 final size:79
Alignment explanation
Indices: 26584740--26584987 Score: 265
Period size: 79 Copynumber: 3.2 Consensus size: 79
26584730 ATGTCCGGGC
* * * * * *
26584740 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
26584803 AGATACTAATTCCGGGT
64 AGATACTAAATCC-GGT
* *
26584820 TAAG-CCCGAAGGCA-TGGTGCGAGTTACTA-ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
26584882 TTACTAAATCCGGT
66 ATACTAAATCCGGT
* * **
26584896 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
26584961 -TAGCTATATCCGGT
66 ATA-CTAAATCCGGT
* *
26584975 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
26584988 TACGTGATTT
Statistics
Matches: 145, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
76 8 0.06
77 48 0.33
78 22 0.15
79 63 0.43
80 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
ATACTAAATCCGGT
Found at i:26584954 original size:40 final size:39
Alignment explanation
Indices: 26584733--26584954 Score: 256
Period size: 39 Copynumber: 5.7 Consensus size: 39
26584723 TCGAATGATG
* * *
26584733 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
26584773 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
26584812 TTCCGGGTTAAG-CCCGAAGGCA-TGGTGCGAGTTACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
26584850 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
26584890 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
26584929 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26584955 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 13, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
37 11 0.07
38 25 0.16
39 59 0.37
40 57 0.36
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:26607879 original size:40 final size:40
Alignment explanation
Indices: 26607648--26607872 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
26607638 TCGAATGATG
* * * * *
26607648 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
26607688 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26607728 TCCGGGTTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26607767 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26607807 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
26607848 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
26607873 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 35 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26607879 original size:80 final size:79
Alignment explanation
Indices: 26607648--26607905 Score: 292
Period size: 79 Copynumber: 3.3 Consensus size: 79
26607638 TCGAATGATG
* * * * * *
26607648 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
26607711 TTGTGCGAGATACTAAT
64 TTGTGCGAG-TACTAAA
* *
26607728 TCCGGGTTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
26607791 TGTGCGAGTTACTAAA
65 TGTGCGAG-TACTAAA
*
26607807 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
** *
26607872 GAACGAGTAGCTATA
66 GTGCGAGTA-CTAAA
* *
26607887 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26607906 TACGTGATTT
Statistics
Matches: 154, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 75 0.49
80 75 0.49
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTACTAAA
Found at i:26614776 original size:12 final size:13
Alignment explanation
Indices: 26614754--26614785 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
26614744 TTCATTAAGT
26614754 AATTATTATTTAA
1 AATTATTATTTAA
26614767 AATT-TTATTTAA
1 AATTATTATTTAA
26614779 AA-TATTA
1 AATTATTA
26614786 GTATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.06
12 13 0.72
13 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
AATTATTATTTAA
Found at i:26618507 original size:15 final size:15
Alignment explanation
Indices: 26618487--26618517 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26618477 ATTCAAAGAA
26618487 ACAAATTAGTTCTCT
1 ACAAATTAGTTCTCT
26618502 ACAAATTAGTTCTCT
1 ACAAATTAGTTCTCT
26618517 A
1 A
26618518 AGTCATCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.39
Consensus pattern (15 bp):
ACAAATTAGTTCTCT
Found at i:26620007 original size:64 final size:68
Alignment explanation
Indices: 26619929--26620091 Score: 190
Period size: 71 Copynumber: 2.4 Consensus size: 68
26619919 TACATGATAC
* * ** *
26619929 ATACTTTAACATTTCATGCAAATATAATATAGAAAATGAT-AA-ATAACGACATAAATTAC-ATA
1 ATACATTAACATTTCATGCAAATATAACATAGAAAACAATGAATATAACAACATAAATTACAATA
26619991 -AT
66 TAT
* *
26619993 ATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGAATATAACAATATAAATTACATA
1 ATACATTAACATTTCATGC-AAATATAACATAGAAAACAATGAATATAACAACATAAATTAC--A
26620058 ATATAT
63 ATATAT
* *
26620064 ATACAATAATATTTCATGCAAATATAAC
1 ATACATTAACATTTCATGCAAATATAAC
26620092 TTAAAATAAC
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
64 18 0.22
65 17 0.21
66 2 0.02
67 15 0.18
70 11 0.13
71 19 0.23
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (68 bp):
ATACATTAACATTTCATGCAAATATAACATAGAAAACAATGAATATAACAACATAAATTACAATA
TAT
Found at i:26620536 original size:26 final size:26
Alignment explanation
Indices: 26620503--26620610 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
26620493 TGATACAAAT
26620503 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
26620529 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26620555 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26620581 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26620607 TGAT
1 TGAT
26620611 GTGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26623672 original size:12 final size:12
Alignment explanation
Indices: 26623632--26623796 Score: 99
Period size: 12 Copynumber: 14.6 Consensus size: 12
26623622 ATTATACATA
26623632 ATAATA-AATA-
1 ATAATATAATAT
* *
26623642 ATAAAATAATAAA
1 ATAATATAAT-AT
26623655 ATAATATAATAT
1 ATAATATAATAT
26623667 ATAATA-AA-AT
1 ATAATATAATAT
*
26623677 A-AAAATAATAT
1 ATAATATAATAT
*
26623688 AATGA-ATAATAT
1 -ATAATATAATAT
26623700 AT-ATAATAA-A-
1 ATAAT-ATAATAT
*
26623710 ATGATATAATAT
1 ATAATATAATAT
*
26623722 ATAATAAAATAT
1 ATAATATAATAT
*
26623734 ATAAATAAAATAT
1 AT-AATATAATAT
26623747 ATAATA-AA-AT
1 ATAATATAATAT
26623757 ATAA-ATAATAT
1 ATAATATAATAT
*
26623768 AATAA-ATAATAC
1 -ATAATATAATAT
*
26623780 ATAA-ATAA-AA
1 ATAATATAATAT
26623790 ATAATAT
1 ATAATAT
26623797 GTATAATAAT
Statistics
Matches: 129, Mismatches: 9, Indels: 33
0.75 0.05 0.19
Matches are distributed among these distances:
9 4 0.03
10 30 0.23
11 27 0.21
12 46 0.36
13 22 0.17
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.32
Consensus pattern (12 bp):
ATAATATAATAT
Found at i:26623672 original size:35 final size:35
Alignment explanation
Indices: 26623624--26623795 Score: 144
Period size: 35 Copynumber: 4.8 Consensus size: 35
26623614 TTTTTAAAAT
26623624 TATACATA-ATAATAAATAATAAAATAATAAAATAA
1 TATA-ATATATAATAAATAATAAAATAATAAAATAA
*
26623659 TATAATATATAAT-AA-AATAAAAATAATATAATGAA
1 TATAATATATAATAAATAAT-AAAATAATAAAAT-AA
26623694 TA-ATATATATAATAAAATGATATAATATATAATAAAAT-A
1 TATA-ATATATAAT-AAAT-A-ATAA-A-ATAATAAAATAA
* *
26623733 TATAA-ATAAAATATATAATAAAAT-AT-AAATAA
1 TATAATATATAATAAATAATAAAATAATAAAATAA
* *
26623765 TATAATAAATAATACATAAATAAAAATAATA
1 TATAATATATAATAAAT-AAT-AAAATAATA
26623796 TGTATAATAA
Statistics
Matches: 112, Mismatches: 7, Indels: 34
0.73 0.05 0.22
Matches are distributed among these distances:
31 4 0.04
32 8 0.07
33 13 0.12
34 22 0.20
35 31 0.28
36 3 0.03
37 5 0.04
38 6 0.05
39 7 0.06
40 4 0.04
41 9 0.08
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (35 bp):
TATAATATATAATAAATAATAAAATAATAAAATAA
Found at i:26623765 original size:80 final size:82
Alignment explanation
Indices: 26623632--26623789 Score: 234
Period size: 80 Copynumber: 2.0 Consensus size: 82
26623622 ATTATACATA
*
26623632 ATAATAAATAATAAAATAATAAAATAATATAATATATAATAAAATAAAAATAATATAATGAATAA
1 ATAATAAATAATAAAATAATAAAATAATATAATATATAATAAAATAAAAATAATATAATAAATAA
*
26623697 TATATATAATAAAATGAT
66 TACATA-AATAAAATGAT
* *
26623715 ATAATATATAATAAAAT-ATATAAAT-A-A-AATATATAATAAAATATAAATAATATAATAAATA
1 ATAATAAATAATAAAATAATA-AAATAATATAATATATAATAAAATAAAAATAATATAATAAATA
26623776 ATACATAAATAAAA
65 ATACATAAATAAAA
26623790 ATAATATGTA
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
79 7 0.10
80 38 0.54
81 1 0.01
82 4 0.06
83 20 0.29
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (82 bp):
ATAATAAATAATAAAATAATAAAATAATATAATATATAATAAAATAAAAATAATATAATAAATAA
TACATAAATAAAATGAT
Found at i:26623770 original size:5 final size:5
Alignment explanation
Indices: 26623629--26623796 Score: 83
Period size: 5 Copynumber: 34.4 Consensus size: 5
26623619 AAAATTATAC
* * *
26623629 ATAAT AATAA- ATAAT AAAAT AATAAA ATAAT ATAAT AT-AT AATAAA
1 ATAAT -ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT -ATAAT
* *
26623675 ATAAAA ATAAT ATAAT GAATAAT AT-AT ATAAT A-AA- ATGAT ATAAT
1 AT-AAT ATAAT ATAAT --ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* * *
26623720 AT-AT AATAAA AT-AT ATAA- ATAAA AT-AT ATAAT AAAAT ATAA- ATAAT
1 ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
*
26623766 ATAAT A-AAT AATACAT A-AAT A-AAA ATAAT AT
1 ATAAT ATAAT -ATA-AT ATAAT ATAAT ATAAT AT
26623797 GTATAATAAT
Statistics
Matches: 127, Mismatches: 15, Indels: 41
0.69 0.08 0.22
Matches are distributed among these distances:
3 1 0.01
4 38 0.30
5 65 0.51
6 16 0.13
7 7 0.06
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.32
Consensus pattern (5 bp):
ATAAT
Found at i:26623783 original size:23 final size:23
Alignment explanation
Indices: 26623632--26623787 Score: 125
Period size: 23 Copynumber: 7.0 Consensus size: 23
26623622 ATTATACATA
26623632 ATAATAAAT-A-ATA-AAATAAT
1 ATAATAAATAATATATAAATAAT
* *
26623652 AAAATAATATAATATAT-AATAAA
1 ATAATAA-ATAATATATAAATAAT
*
26623675 ATAA-AAATAATATAATGAATAAT
1 ATAATAAATAATAT-ATAAATAAT
*
26623698 AT-ATATAATAAAATGATATAAT-AT
1 ATAATA-AATAATAT-ATA-AATAAT
*
26623722 ATAAT-AA-AATATATAAATAAA
1 ATAATAAATAATATATAAATAAT
*
26623743 AT-ATATAATAAAATATAAATAAT
1 ATAATA-AATAATATATAAATAAT
*
26623766 ATAATAAATAATACATAAATAA
1 ATAATAAATAATATATAAATAA
26623788 AAATAATATG
Statistics
Matches: 108, Mismatches: 13, Indels: 27
0.73 0.09 0.18
Matches are distributed among these distances:
20 11 0.10
21 15 0.14
22 12 0.11
23 49 0.45
24 16 0.15
25 5 0.05
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (23 bp):
ATAATAAATAATATATAAATAAT
Found at i:26623891 original size:29 final size:27
Alignment explanation
Indices: 26623835--26623895 Score: 86
Period size: 29 Copynumber: 2.2 Consensus size: 27
26623825 ATGTTTATAG
*
26623835 TAAAAAAATAATAATATATAAAATATT
1 TAAAAAAATAATAATATATAAAAAATT
*
26623862 TAAAATAAATAAATTATATATAAAAAATT
1 TAAAA-AAAT-AATAATATATAAAAAATT
26623891 TAAAA
1 TAAAA
26623896 GGGGTTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.17
28 4 0.13
29 21 0.70
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (27 bp):
TAAAAAAATAATAATATATAAAAAATT
Found at i:26624087 original size:30 final size:30
Alignment explanation
Indices: 26624053--26624110 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
26624043 ATAATGGCCA
*
26624053 TTAGGACTAAATTGA-AACAAAAATAAAAGG
1 TTAGGACCAAATT-ATAACAAAAATAAAAGG
* *
26624083 TTAGGGCCAAATTATAATAAAAATAAAA
1 TTAGGACCAAATTATAACAAAAATAAAA
26624111 TGAAATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.22
Consensus pattern (30 bp):
TTAGGACCAAATTATAACAAAAATAAAAGG
Found at i:26625435 original size:45 final size:45
Alignment explanation
Indices: 26625309--26625435 Score: 123
Period size: 45 Copynumber: 2.8 Consensus size: 45
26625299 AATATCCTTG
* * *
26625309 ATCTGCTCCCCGTCAAATACAGAGACACCAAATCTGCTATCTTCG
1 ATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTTATCTTCA
* * * * * * *
26625354 ATCTGCT--TCGATGTAATCACACAAATATCAGATCTGTTATCTTCA
1 ATCTGCTCCCCG-TCTAAT-ACAGAGACACCAAATCTGTTATCTTCA
*
26625399 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
1 ATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGT
26625436 AGTTTTTGAT
Statistics
Matches: 60, Mismatches: 18, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
43 2 0.03
44 4 0.07
45 47 0.78
46 5 0.08
47 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.28
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTTATCTTCA
Done.