Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 86 of 333
Found at i:26625466 original size:90 final size:90
Alignment explanation
Indices: 26625309--26625487 Score: 254
Period size: 90 Copynumber: 2.0 Consensus size: 90
26625299 AATATCCTTG
26625309 ATCTGCTCCCCGTCAAATACAGAGACACCAAATCTGCTATCTTCGATCTGCTTCGATGTAATCAC
1 ATCTGCTCCCCGTCAAATACAGAGACACCAAATCTGCTATCTTCGATCTGCTTCGATGTAATCAC
*
26625374 ACAAATATCAGATCTGTTATCTTCA
66 ACAAATATCAGATCTGCTATCTTCA
* * * * *
26625399 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG-TAGTTTTTGATCTGCTTTGATGTAAAT-
1 ATCTGCTCCCCGTCAAATACAGAGACACCAAATCTGCTA-TCTTCGATCTGCTTCGATGT-AATC
* *
26625462 ACACAAATGTCAGATTTGCTATCTTC
64 ACACAAATATCAGATCTGCTATCTTC
26625488 GACAGAGACA
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
89 2 0.03
90 74 0.94
91 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.32
Consensus pattern (90 bp):
ATCTGCTCCCCGTCAAATACAGAGACACCAAATCTGCTATCTTCGATCTGCTTCGATGTAATCAC
ACAAATATCAGATCTGCTATCTTCA
Found at i:26628919 original size:33 final size:32
Alignment explanation
Indices: 26628857--26628919 Score: 74
Period size: 33 Copynumber: 1.9 Consensus size: 32
26628847 ATATAATCCA
*
26628857 ACATATATATTTAAACATACAAATGATGCATG
1 ACATATATATTTAAACATACAAATAATGCATG
* *
26628889 ACATATA-ATTCTAATACATATATATAATGCA
1 ACATATATATT-TAA-ACATACAAATAATGCA
26628920 GTTGTAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
31 3 0.12
32 10 0.38
33 13 0.50
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (32 bp):
ACATATATATTTAAACATACAAATAATGCATG
Found at i:26630727 original size:7 final size:7
Alignment explanation
Indices: 26630715--26630873 Score: 91
Period size: 7 Copynumber: 22.1 Consensus size: 7
26630705 AATTATACAT
26630715 AATAATA
1 AATAATA
26630722 AATAATA
1 AATAATA
*
26630729 TATAATA
1 AATAATA
*
26630736 TATAAT-
1 AATAATA
26630742 -ATAATA
1 AATAATA
*
26630748 TATAATA
1 AATAATA
26630755 ACATAA-A
1 A-ATAATA
26630762 AATAATA
1 AATAATA
26630769 TAATGAAT-
1 -AAT-AATA
26630777 AAT-ATA
1 AATAATA
*
26630783 TATAATAA
1 AATAAT-A
*
26630791 AATGATAA
1 AATAAT-A
26630799 AATATATA
1 AATA-ATA
26630807 AATAAAATA
1 AAT--AATA
*
26630816 TATAATA
1 AATAATA
26630823 AA-ATATA
1 AATA-ATA
26630830 AATAATA
1 AATAATA
26630837 TAATAA-A
1 -AATAATA
26630844 TAATACATA
1 -AATA-ATA
26630853 AATAA-A
1 AATAATA
26630859 AATAATA
1 AATAATA
*
26630866 TATAATA
1 AATAATA
26630873 A
1 A
26630874 TTTTTTACAT
Statistics
Matches: 124, Mismatches: 10, Indels: 36
0.73 0.06 0.21
Matches are distributed among these distances:
5 7 0.06
6 13 0.10
7 60 0.48
8 32 0.26
9 11 0.09
10 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:26630753 original size:33 final size:32
Alignment explanation
Indices: 26630716--26630873 Score: 143
Period size: 33 Copynumber: 4.9 Consensus size: 32
26630706 ATTATACATA
26630716 ATAATAAATAATATATAATATATAATATAATAT
1 ATAATAAATAATATATAATATATAATA-AATAT
*
26630749 ATAATAACATAA-AAATAATATAATGAATAATATAT
1 ATAATAA-ATAATATATAATAT-AT-AATAA-ATAT
*
26630784 ATAAT-AA-AATGATAAAATATATAAATAAAATAT
1 ATAATAAATAAT-ATATAATATAT-AAT-AAATAT
26630817 ATAAT-AA-AATATA-AATAATATAATAAATA-
1 ATAATAAATAATATATAAT-ATATAATAAATAT
*
26630846 ATACATAAATAA-AAATAATATATAATAA
1 ATA-ATAAATAATATATAATATATAATAA
26630874 TTTTTTACAT
Statistics
Matches: 108, Mismatches: 5, Indels: 26
0.78 0.04 0.19
Matches are distributed among these distances:
29 3 0.03
30 7 0.06
31 19 0.18
32 14 0.13
33 35 0.32
34 17 0.16
35 13 0.12
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (32 bp):
ATAATAAATAATATATAATATATAATAAATAT
Found at i:26630784 original size:52 final size:51
Alignment explanation
Indices: 26630716--26630874 Score: 185
Period size: 52 Copynumber: 3.2 Consensus size: 51
26630706 ATTATACATA
26630716 ATAATAAATAATATATAAT-ATATAATATAATATATAATAACATAAAAATAAT
1 ATAAT-AATAATATATAATAATATAATATAATATATAATAA-ATAAAAATAAT
* *
26630768 ATAATGAATAATATAT-ATAATAAAATGATAAAATAT-ATAAAT-AAAAT-AT
1 ATAAT-AATAATATATAATAATATAAT-ATAATATATAATAAATAAAAATAAT
26630817 ATAATAA-AATATA-AATAATATAATA-AATA-ATACATAAATAAAAATAAT
1 ATAATAATAATATATAATAATATAATATAATATATA-ATAAATAAAAATAAT
26630865 AT-ATAATAAT
1 ATAATAATAAT
26630875 TTTTTACATA
Statistics
Matches: 94, Mismatches: 5, Indels: 20
0.79 0.04 0.17
Matches are distributed among these distances:
44 2 0.02
45 3 0.03
46 7 0.07
47 24 0.26
48 9 0.10
49 7 0.07
50 5 0.05
51 4 0.04
52 25 0.27
53 8 0.09
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (51 bp):
ATAATAATAATATATAATAATATAATATAATATATAATAAATAAAAATAAT
Found at i:26630853 original size:11 final size:11
Alignment explanation
Indices: 26630708--26630857 Score: 125
Period size: 12 Copynumber: 13.8 Consensus size: 11
26630698 TTTTTAAAAT
*
26630708 TATACATAATA
1 TATAAATAATA
26630719 -ATAAATAATA
1 TATAAATAATA
26630729 TAT-AAT-ATA
1 TATAAATAATA
*
26630738 TA-ATATAATA
1 TATAAATAATA
*
26630748 TAT-AATAACA
1 TATAAATAATA
*
26630758 TAAAAATAATA
1 TATAAATAATA
*
26630769 TAATGAATAATA
1 T-ATAAATAATA
*
26630781 TATATAATAAAA
1 TATA-AATAATA
26630793 TGAT-AA-AATA
1 T-ATAAATAATA
*
26630803 TATAAATAAAA
1 TATAAATAATA
*
26630814 TATATAATAAAA
1 TATA-AATAATA
26630826 TATAAATAATA
1 TATAAATAATA
26630837 TAATAAATAATA
1 T-ATAAATAATA
*
26630849 CATAAATAA
1 TATAAATAA
26630858 AAATAATATA
Statistics
Matches: 113, Mismatches: 14, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
9 9 0.08
10 30 0.27
11 35 0.31
12 37 0.33
13 2 0.02
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.33
Consensus pattern (11 bp):
TATAAATAATA
Found at i:26630933 original size:9 final size:9
Alignment explanation
Indices: 26630910--26630952 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
26630900 TAGTAAAAAA
26630910 ATAATAATAT
1 ATAA-AATAT
26630920 ATAAAATAT
1 ATAAAATAT
* *
26630929 TTAAAATAA
1 ATAAAATAT
*
26630938 ATAAATTAT
1 ATAAAATAT
26630947 ATAAAA
1 ATAAAA
26630953 AAAATTTTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
9 23 0.85
10 4 0.15
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
ATAAAATAT
Found at i:26630936 original size:18 final size:18
Alignment explanation
Indices: 26630910--26630957 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
26630900 TAGTAAAAAA
*
26630910 ATAATAATATATAAAATAT
1 ATAA-AATAAATAAAATAT
* *
26630929 TTAAAATAAATAAATTAT
1 ATAAAATAAATAAAATAT
*
26630947 ATAAAAAAAAT
1 ATAAAATAAAT
26630958 TTTAAAGGGA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 21 0.88
19 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
ATAAAATAAATAAAATAT
Found at i:26630959 original size:29 final size:27
Alignment explanation
Indices: 26630903--26630959 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
26630893 ATGTTTATAG
* *
26630903 TAAAAAAATAATAATATATAAAATATT
1 TAAAAAAATAATAATATAAAAAAAATT
*
26630930 TAAAATAAATAAATTATATAAAAAAAATT
1 TAAAA-AAAT-AATAATATAAAAAAAATT
26630959 T
1 T
26630960 TAAAGGGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.20
28 4 0.16
29 16 0.64
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (27 bp):
TAAAAAAATAATAATATAAAAAAAATT
Found at i:26631155 original size:30 final size:30
Alignment explanation
Indices: 26631121--26631178 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
26631111 ATAATGGCCA
*
26631121 TTAGGACTAAATTGA-AACAAAAATAAAAGG
1 TTAGGACCAAATT-ATAACAAAAATAAAAGG
* *
26631151 TTAGGGCCAAATTATAATAAAAATAAAA
1 TTAGGACCAAATTATAACAAAAATAAAA
26631179 TGAAATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.22
Consensus pattern (30 bp):
TTAGGACCAAATTATAACAAAAATAAAAGG
Found at i:26632188 original size:17 final size:19
Alignment explanation
Indices: 26632166--26632206 Score: 68
Period size: 17 Copynumber: 2.3 Consensus size: 19
26632156 GAACATTTAA
26632166 TTATTTTGGTTT-TT-TTT
1 TTATTTTGGTTTATTGTTT
26632183 TTATTTTGGTTTATTGTTT
1 TTATTTTGGTTTATTGTTT
26632202 TTATT
1 TTATT
26632207 GGGCCCAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 12 0.55
18 2 0.09
19 8 0.36
ACGTcount: A:0.10, C:0.00, G:0.12, T:0.78
Consensus pattern (19 bp):
TTATTTTGGTTTATTGTTT
Found at i:26634338 original size:12 final size:13
Alignment explanation
Indices: 26634316--26634347 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
26634306 TTTGTTAAGT
26634316 AATTATTATTTAA
1 AATTATTATTTAA
26634329 AATT-TTATTTAA
1 AATTATTATTTAA
26634341 AA-TATTA
1 AATTATTA
26634348 GTATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.06
12 13 0.72
13 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
AATTATTATTTAA
Found at i:26636381 original size:33 final size:33
Alignment explanation
Indices: 26636339--26636408 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 33
26636329 CACACGCCCA
*
26636339 TGTGCTTTGGGACAC-GCCAGTGTCCCCTACCCG
1 TGTGCTTTGGGACACTCCCA-TGTCCCCTACCCG
*
26636372 TGTGCTTTGGGACACTCCCATGTCCCCTACCTG
1 TGTGCTTTGGGACACTCCCATGTCCCCTACCCG
26636405 TGTG
1 TGTG
26636409 GAATGAATAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 31 0.91
34 3 0.09
ACGTcount: A:0.11, C:0.34, G:0.26, T:0.29
Consensus pattern (33 bp):
TGTGCTTTGGGACACTCCCATGTCCCCTACCCG
Found at i:26638000 original size:27 final size:27
Alignment explanation
Indices: 26637970--26638052 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
26637960 ATCTCATATC
* *
26637970 TGTAGGCTAGTATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
*
26637997 TGTAGGGTAGAATTACTGAAATGTCCC-
1 TGTAGGGTAGAATTACTGAAAT-ACCCT
*
26638024 TGTAGGGTAGAATTATTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
26638051 TG
1 TG
26638053 GTTTACAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.06
27 43 0.88
28 3 0.06
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCT
Found at i:26638064 original size:27 final size:27
Alignment explanation
Indices: 26638041--26638407 Score: 263
Period size: 27 Copynumber: 13.6 Consensus size: 27
26638031 TAGAATTATT
* * *
26638041 GAAATACCCTTGGTTTACAAAATTACT
1 GAAATACCCTTGATTTGCAAAATTACC
* *
26638068 G-AATACCCTTGGTTTACAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* ** * *
26638094 AAAATACCCTCAATTAGAAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* * * *
26638121 AAAATACCCCT-AGTTTGTAAAATTATC
1 GAAATACCCTTGA-TTTGCAAAATTACC
* * ** *
26638148 AAAATACCCCTGATTTGTGAAATTATC
1 GAAATACCCTTGATTTGCAAAATTACC
* * * *
26638175 GAAATACCCTCGACTTGTAAAATTATC
1 GAAATACCCTTGATTTGCAAAATTACC
* * * **
26638202 GAAATACCCTCGACTTGTAAAATTATT
1 GAAATACCCTTGATTTGCAAAATTACC
* * * *
26638229 GAAATACCATCGATTCGTAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* *
26638256 AAAATACCCTTGATTTGGAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* * **
26638283 AAAATACCCTTAATTTAG-AAAATTATA
1 GAAATACCCTTGATTT-GCAAAATTACC
* * * *
26638310 GAAATACCCCTAATTTACAAAATTACA
1 GAAATACCCTTGATTTGCAAAATTACC
* *
26638337 GAAATACCCTTGATTTTCAAAATTACA
1 GAAATACCCTTGATTTGCAAAATTACC
* * *
26638364 GAAATACCATTGGTTTGCAAAATTATC
1 GAAATACCCTTGATTTGCAAAATTACC
*
26638391 GAAATACCCTTGGTTTG
1 GAAATACCCTTGATTTG
26638408 TAGATTTACC
Statistics
Matches: 289, Mismatches: 46, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
26 25 0.09
27 262 0.91
28 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
GAAATACCCTTGATTTGCAAAATTACC
Found at i:26638716 original size:41 final size:41
Alignment explanation
Indices: 26638671--26638789 Score: 193
Period size: 41 Copynumber: 2.9 Consensus size: 41
26638661 GAAAAAATTG
26638671 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
*
26638712 AGGATCGCATGGTTGCTTGACGACCATGGATCCACCGATTA
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
* * * *
26638753 AGGATTGTAGGGTTGCTTGACGATCGTGGATCCACCG
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
26638790 GTGGCTTTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (41 bp):
AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
Found at i:26638983 original size:22 final size:22
Alignment explanation
Indices: 26638931--26638984 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
26638921 GCCAATTATT
*
26638931 CTGATTATGGCTTTGCACCAAC
1 CTGATTATGGCTTTACACCAAC
* **
26638953 CT-ACATATGGCTTTATGCCAAC
1 CTGA-TTATGGCTTTACACCAAC
26638975 CTGATTATGG
1 CTGATTATGG
26638985 TTGTGTGCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTTTACACCAAC
Found at i:26645321 original size:18 final size:18
Alignment explanation
Indices: 26645298--26645336 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
26645288 GGGCTAACCA
26645298 ATCCATGCCAAGGATTAC
1 ATCCATGCCAAGGATTAC
*
26645316 ATCCATGCCAAGTATTAC
1 ATCCATGCCAAGGATTAC
26645334 ATC
1 ATC
26645337 AAACTCATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (18 bp):
ATCCATGCCAAGGATTAC
Found at i:26650892 original size:42 final size:42
Alignment explanation
Indices: 26650832--26651013 Score: 132
Period size: 42 Copynumber: 4.2 Consensus size: 42
26650822 GTCCCAGACG
** * *
26650832 TGGTCTTACATGGGATCTCACATTGATGTCATATCCTAGATA
1 TGGTCTTACATGAAATCTCACATCGATGCCATATCCTAGATA
* ** * * **
26650874 TGGTCTTATATGAAATCTCATTTCGATGCCATGTCCCAGACG
1 TGGTCTTACATGAAATCTCACATCGATGCCATATCCTAGATA
* * * *
26650916 TGGTCTTACACGAAATCTCATATCAACGCCATAT-CTCAGATA
1 TGGTCTTACATGAAATCTCACATCGATGCCATATCCT-AGATA
* * *
26650958 TGGTCTTACATGATAACACATAACGATGCCGATGTCATATCCTAGATA
1 TGGTCTTACATGA-AA-TC-TCAC-AT--CGATGCCATATCCTAGATA
26651006 TGGTCTTA
1 TGGTCTTA
26651014 TACTGGATTT
Statistics
Matches: 105, Mismatches: 27, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
41 1 0.01
42 74 0.70
43 2 0.02
44 1 0.01
45 2 0.02
46 2 0.02
48 21 0.20
49 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (42 bp):
TGGTCTTACATGAAATCTCACATCGATGCCATATCCTAGATA
Found at i:26650957 original size:84 final size:84
Alignment explanation
Indices: 26650815--26650970 Score: 215
Period size: 84 Copynumber: 1.9 Consensus size: 84
26650805 TAAGATGCCA
* ** ** * *
26650815 ATGCCATGTCCCAGACGTGGTCTTACATGGGATCTCACATTGATGTCATATCCTAGATATGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCTAGATATGGTCT
*
26650880 TATATGAAATCTCATTTCG
66 TACATGAAATCTCATTTCG
*
26650899 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCATATCAACGCCATAT-CTCAGATATGGTC
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCT-AGATATGGTC
26650963 TTACATGA
65 TTACATGA
26650971 TAACACATAA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
83 2 0.03
84 60 0.97
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (84 bp):
ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCTAGATATGGTCT
TACATGAAATCTCATTTCG
Found at i:26650985 original size:84 final size:84
Alignment explanation
Indices: 26650815--26650993 Score: 209
Period size: 84 Copynumber: 2.1 Consensus size: 84
26650805 TAAGATGCCA
* ** ** * *
26650815 ATGCCATGTCCCAGACGTGGTCTTACATGGGATCTCACATTGATGTCATATCCTAGATATGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCTAGATATGGTCT
* * **
26650880 TATATGAAATCTCATTTCG
66 TACATGAAATCACATAACG
*
26650899 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCATATCAACGCCATAT-CTCAGATATGGTC
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCT-AGATATGGTC
26650963 TTACATGATAA-CACATAACG
65 TTACATGA-AATCACATAACG
26650983 ATGCCGATGTC
1 ATGCC-ATGTC
26650994 ATATCCTAGA
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
83 2 0.03
84 71 0.89
85 7 0.09
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (84 bp):
ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCTAGATATGGTCT
TACATGAAATCACATAACG
Found at i:26653467 original size:44 final size:44
Alignment explanation
Indices: 26653404--26653532 Score: 204
Period size: 44 Copynumber: 2.9 Consensus size: 44
26653394 TATGTATGAG
*
26653404 GCATTCGAGCTCATTGAGTTGGTCCGAGTTCATTATAGATGCGA
1 GCATCCGAGCTCATTGAGTTGGTCCGAGTTCATTATAGATGCGA
* * *
26653448 GCATCTGAGCTCGTTGAGTTGGTCTGAGTTCATTATAGATGCGA
1 GCATCCGAGCTCATTGAGTTGGTCCGAGTTCATTATAGATGCGA
* *
26653492 GCATCCGAGCTCATTGATTTGGTCCGAGTTCATTATGGATG
1 GCATCCGAGCTCATTGAGTTGGTCCGAGTTCATTATAGATG
26653533 TGATACATGT
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 76 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (44 bp):
GCATCCGAGCTCATTGAGTTGGTCCGAGTTCATTATAGATGCGA
Found at i:26658561 original size:9 final size:9
Alignment explanation
Indices: 26658506--26658572 Score: 55
Period size: 9 Copynumber: 7.0 Consensus size: 9
26658496 AAATTTTAAA
26658506 AAAACTTATAT
1 AAAA-TTAT-T
*
26658517 AACATTATT
1 AAAATTATT
*
26658526 AAAATCATT
1 AAAATTATT
*
26658535 AAATACTA-T
1 AAA-ATTATT
26658544 AAATTATTATT
1 AAA--ATTATT
26658555 AAAATTATT
1 AAAATTATT
26658564 AAAATTATT
1 AAAATTATT
26658573 GCAAAAAAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
9 30 0.64
10 10 0.21
11 7 0.15
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (9 bp):
AAAATTATT
Found at i:26659300 original size:10 final size:10
Alignment explanation
Indices: 26659274--26659363 Score: 51
Period size: 10 Copynumber: 9.0 Consensus size: 10
26659264 ACTTACAACA
*
26659274 TTTA-AATTC
1 TTTATAATTT
*
26659283 TTTCTAATTT
1 TTTATAATTT
*
26659293 TTTATAATTG
1 TTTATAATTT
26659303 TTTATAATTT
1 TTTATAATTT
* *
26659313 TTAACAAATTTT
1 TTTA-TAA-TTT
*
26659325 TTTACAAATTT
1 TTTA-TAATTT
* *
26659336 TTAATTATTT
1 TTTATAATTT
*
26659346 TTTAT--GTT
1 TTTATAATTT
26659354 TTTATAATTT
1 TTTATAATTT
26659364 ATAAAAAATT
Statistics
Matches: 62, Mismatches: 14, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
8 7 0.11
9 3 0.05
10 34 0.55
11 8 0.13
12 10 0.16
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.63
Consensus pattern (10 bp):
TTTATAATTT
Found at i:26661472 original size:128 final size:128
Alignment explanation
Indices: 26661244--26661500 Score: 469
Period size: 128 Copynumber: 2.0 Consensus size: 128
26661234 GATGTGAAAG
* *
26661244 TTAATAGAAGCGTGTGTTGTTCATGTCATGTGATAGAGTTTATAATGTGCTAATAATGTGAATAT
1 TTAATAGAAGCGTGTGTTGTTCATGTCATGTGATAGAGTTTATAATGAGCTAATAATATGAATAT
*
26661309 ATAGTGAATATGTGCAGAAAATTGATAAGTAAATATGTGATAATAATGTGGATATTTTGGCCT
66 ACAGTGAATATGTGCAGAAAATTGATAAGTAAATATGTGATAATAATGTGGATATTTTGGCCT
* *
26661372 TTAATATAAGCGTGTGTTGTTCATGTCATGTGATAGTGTTTATAATGAGCTAATAATATGAATAT
1 TTAATAGAAGCGTGTGTTGTTCATGTCATGTGATAGAGTTTATAATGAGCTAATAATATGAATAT
26661437 ACAGTGAATATGTGCAGAAAATTGATAAGTAAATATGTGATAATAATGTGGATATTTTGGCCT
66 ACAGTGAATATGTGCAGAAAATTGATAAGTAAATATGTGATAATAATGTGGATATTTTGGCCT
26661500 T
1 T
26661501 GTGTTATTAT
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
128 124 1.00
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.38
Consensus pattern (128 bp):
TTAATAGAAGCGTGTGTTGTTCATGTCATGTGATAGAGTTTATAATGAGCTAATAATATGAATAT
ACAGTGAATATGTGCAGAAAATTGATAAGTAAATATGTGATAATAATGTGGATATTTTGGCCT
Found at i:26665212 original size:18 final size:18
Alignment explanation
Indices: 26665191--26665233 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
26665181 ATAAACTTAA
26665191 ATATGTTATGAATATGTT
1 ATATGTTATGAATATGTT
26665209 ATATGTTATGAATATGTT
1 ATATGTTATGAATATGTT
*
26665227 ACATGTT
1 ATATGTT
26665234 TGCTTAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (18 bp):
ATATGTTATGAATATGTT
Found at i:26672819 original size:40 final size:41
Alignment explanation
Indices: 26672735--26672836 Score: 122
Period size: 40 Copynumber: 2.5 Consensus size: 41
26672725 TTGAATGCTG
26672735 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATA
* * *
26672775 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGTTATTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACTATA
*
26672814 TTCCGGGTTAAGTCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCA
26672837 CTTGAACGAG
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
39 2 0.04
40 43 0.81
41 8 0.15
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATA
Found at i:26682111 original size:40 final size:40
Alignment explanation
Indices: 26682018--26682157 Score: 237
Period size: 40 Copynumber: 3.5 Consensus size: 40
26682008 TATGTGCATA
26682018 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCC-AAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
26682057 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
26682097 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCTGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
26682137 GCATTCGTGCTGGTTGTTATA
1 GCATTCGTGCGGGTTATTATA
26682158 TCCGAGCCAA
Statistics
Matches: 95, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 36 0.38
40 59 0.62
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.31
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:26686801 original size:27 final size:26
Alignment explanation
Indices: 26686757--26686808 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26686747 CTCGCTGCAA
*
26686757 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
26686784 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
26686809 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:26686878 original size:26 final size:27
Alignment explanation
Indices: 26686849--26686908 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
26686839 ACATATATAT
*
26686849 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
26686875 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
26686902 ATATCTG
1 ATATCTG
26686909 GTAGCCTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:26697926 original size:40 final size:40
Alignment explanation
Indices: 26697866--26698078 Score: 338
Period size: 40 Copynumber: 5.3 Consensus size: 40
26697856 GCTCAAATGC
*
26697866 CTTAGCCCGGTTATAATAACTCGCACAATTGCCTTCGGGA
1 CTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA
*
26697906 CTTAGCCCGGTTATAGTAACTAGCACAATTGCCTTCGGGA
1 CTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA
*
26697946 CTTAGCCTGGTTATAGTAACTCGCACAATTGCCTTCGGGA
1 CTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA
* *
26697986 CTTGGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA
1 CTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA
** *
26698026 CTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGG-
1 CTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA
*
26698065 CTTAGCCCAGTTAT
1 CTTAGCCCGGTTAT
26698079 CAATCCGAAT
Statistics
Matches: 160, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 11 0.07
40 149 0.93
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA
Found at i:26700285 original size:46 final size:46
Alignment explanation
Indices: 26700230--26700336 Score: 169
Period size: 46 Copynumber: 2.3 Consensus size: 46
26700220 AGTGAATTTG
* ***
26700230 GACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCA
1 GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCA
*
26700276 GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCA
1 GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCA
26700322 GACTCAACTCAACGA
1 GACTCAACTCAACGA
26700337 CTTCGGATGC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 56 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (46 bp):
GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCA
Found at i:26700342 original size:46 final size:46
Alignment explanation
Indices: 26700254--26700343 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
26700244 AGCTCGGGTG
*
26700254 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACA
1 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGACTTCGGACA
26700300 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGACTTCGGA
1 TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGACTTCGGA
26700344 TGCTCAACCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (46 bp):
TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGACTTCGGACA
Found at i:26700362 original size:46 final size:45
Alignment explanation
Indices: 26700256--26700354 Score: 137
Period size: 46 Copynumber: 2.2 Consensus size: 45
26700246 CTCGGGTGTT
* * *
26700256 CGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATT
1 CGCAACCATAAGTGAACTCAGACTCAACTCAACGACTTCGGA-ATG
*
26700302 CGCATCCATAAGTGAACTCAGACTCAACTCAACGACTTCGG-ATG
1 CGCAACCATAAGTGAACTCAGACTCAACTCAACGACTTCGGAATG
*
26700346 CTCAACCAT
1 CGCAACCAT
26700355 CCTAGTGACA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 9 0.18
46 40 0.82
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.21
Consensus pattern (45 bp):
CGCAACCATAAGTGAACTCAGACTCAACTCAACGACTTCGGAATG
Found at i:26709361 original size:40 final size:40
Alignment explanation
Indices: 26709260--26709480 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
26709250 TATTCGAATG
26709260 ATATCCGGGCTAAGT-CCGAAGGCATTTGTG-TATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
26709298 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * * *
26709337 ATATCCGGCCTAAGTCCCAAAGGCATTTGTGCTAGTGACA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
26709377 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
26709417 ATATCCGGGCTAAGACCAGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
26709457 ATATCC-GGCTAAATCCTGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCA
26709481 CTTGGGTTTG
Statistics
Matches: 163, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
37 8 0.05
38 21 0.13
39 29 0.18
40 102 0.63
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:26725486 original size:37 final size:37
Alignment explanation
Indices: 26725391--26725530 Score: 164
Period size: 37 Copynumber: 3.8 Consensus size: 37
26725381 ACGATGATAA
* *
26725391 CGGCTAAGTCCCGAGGCATTTGTGCGAGCTA-CTAATC
1 CGGCTAAGTCCCGAGGCA-TTGTGCGAGTTACCAAATC
*
26725428 AGGCTAA-TCCCGAGGC-TT-TGCGAGTTACCAAATC
1 CGGCTAAGTCCCGAGGCATTGTGCGAGTTACCAAATC
*
26725462 CGGCTAAGTCTCGAAGGCATT-TGCGAGTTACCAAATC
1 CGGCTAAGTCCCG-AGGCATTGTGCGAGTTACCAAATC
* *
26725499 CGGGCTAAGTCCCGAAGCATTGGGCGAGTTAC
1 C-GGCTAAGTCCCGAGGCATTGTGCGAGTTAC
26725531 TATAACCGGG
Statistics
Matches: 89, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
33 8 0.09
34 13 0.15
35 4 0.04
36 13 0.15
37 31 0.35
38 20 0.22
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (37 bp):
CGGCTAAGTCCCGAGGCATTGTGCGAGTTACCAAATC
Found at i:26725515 original size:38 final size:39
Alignment explanation
Indices: 26725392--26725567 Score: 167
Period size: 38 Copynumber: 4.7 Consensus size: 39
26725382 CGATGATAAC
* * *
26725392 GGCTAAGTCCCG-AGGCATTTGTGCGAGCTA-CTAAT-CA
1 GGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACCAAATCCG
26725429 GGCTAA-TCCCG-AGGC-TT-TGCGAGTTACCAAATCC-
1 GGCTAAGTCCCGAAGGCATTGTGCGAGTTACCAAATCCG
*
26725463 GGCTAAGTCTCGAAGGCATT-TGCGAGTTACCAAATCCG
1 GGCTAAGTCCCGAAGGCATTGTGCGAGTTACCAAATCCG
* *
26725501 GGCTAAGTCCCGAA-GCATTGGGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTGTGCGAGTTACCA-AATCCG
* * *
26725539 GGCTATGCCCCGAAGGCATTCGAGCGAGT
1 GGCTAAGTCCCGAAGGCATT-GTGCGAGT
26725568 AGCTATATCC
Statistics
Matches: 120, Mismatches: 9, Indels: 17
0.82 0.06 0.12
Matches are distributed among these distances:
33 8 0.07
34 12 0.10
35 5 0.04
36 13 0.11
37 30 0.25
38 38 0.32
39 7 0.06
40 7 0.06
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTGTGCGAGTTACCAAATCCG
Found at i:26728933 original size:39 final size:40
Alignment explanation
Indices: 26728879--26729095 Score: 331
Period size: 39 Copynumber: 5.6 Consensus size: 40
26728869 TATTCGAATG
26728879 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
26728918 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
26728958 ATATCC-GGCTAAGTCCC-AAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
26728996 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
26729036 ATATCCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
26729075 ATATCC-GGCTAAAT-CCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26729096 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
38 39 0.23
39 80 0.48
40 47 0.28
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:26737072 original size:40 final size:40
Alignment explanation
Indices: 26737026--26737249 Score: 362
Period size: 40 Copynumber: 5.6 Consensus size: 40
26737016 TATTCGAATG
*
26737026 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
26737066 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
26737106 ATATCCGGCCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
26737146 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
26737186 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
26737226 ATATCC-GGCTAAATCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCA
26737250 CTTGGGTTTG
Statistics
Matches: 172, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 16 0.09
40 153 0.89
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:26738972 original size:46 final size:47
Alignment explanation
Indices: 26738848--26738973 Score: 204
Period size: 46 Copynumber: 2.7 Consensus size: 47
26738838 AATCCGCCCC
*
26738848 TAAGTGAACTCGGACTCAACTCAACGAGC-TC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGA-CTTCGGAGCATTCGCATCCA
*
26738894 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGACTTCGGAGCATTCGCATCCA
26738940 TAAGTGAACTCGGACTCAACTCAACGACTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGACTTCGGA
26738974 TGCTCAACCA
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
46 73 0.97
47 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGACTTCGGAGCATTCGCATCCA
Found at i:26738992 original size:46 final size:45
Alignment explanation
Indices: 26738850--26738992 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 45
26738840 TCCGCCCCTA
*
26738850 AGTGAACTCGGACTCAACTCAACGAGC-TC-GA-GCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGA-CTTCGGATGC--TCACCATCC-T
* *** *
26738895 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGACTTCGGATGCTCACCATCC-T
26738941 AAGTGAACTCGGACTCAACTCAACGACTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGACTTCGGATGCTC-ACCATCCT
26738988 AGTGA
1 AGTGA
26738993 CATGTCACTT
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
46 76 0.90
47 3 0.04
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGACTTCGGATGCTCACCATCCT
Found at i:26741936 original size:15 final size:14
Alignment explanation
Indices: 26741911--26741956 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
26741901 AAACCAGGAT
*
26741911 TAAGAAGTCCAAGA
1 TAAGAAATCCAAGA
26741925 TAGAGAAATCCAAGA
1 TA-AGAAATCCAAGA
*
26741940 TAAGGAAATCTAAGA
1 TAA-GAAATCCAAGA
26741955 TA
1 TA
26741957 CAATATCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 3 0.11
15 25 0.89
ACGTcount: A:0.52, C:0.11, G:0.20, T:0.17
Consensus pattern (14 bp):
TAAGAAATCCAAGA
Found at i:26743171 original size:14 final size:14
Alignment explanation
Indices: 26743154--26743184 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
26743144 CTTTATGAAT
26743154 TTCTTTTTATCACA
1 TTCTTTTTATCACA
26743168 TTCTTTTTATCACA
1 TTCTTTTTATCACA
26743182 TTC
1 TTC
26743185 ACTTAATCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.23, G:0.00, T:0.58
Consensus pattern (14 bp):
TTCTTTTTATCACA
Found at i:26745610 original size:40 final size:40
Alignment explanation
Indices: 26745527--26745749 Score: 204
Period size: 40 Copynumber: 5.6 Consensus size: 40
26745517 TTGAATGCTG
* * * * *
26745527 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
26745567 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* ** *
26745607 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
26745647 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
26745687 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
26745726 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26745750 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 20, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.22
40 112 0.71
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:26745664 original size:80 final size:79
Alignment explanation
Indices: 26745527--26745751 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 79
26745517 TTGAATGCTG
* * * * * * * *
26745527 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
26745591 TGTGCGAGA-TACTAAA
64 TGTGCGA-ATTACTAAA
** * *
26745607 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAATTCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
**
26745672 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * *
26745687 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
26745752 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 36 0.30
80 81 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:26745769 original size:79 final size:80
Alignment explanation
Indices: 26745602--26745784 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
26745592 GTGCGAGATA
** * *
26745602 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAATTCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
26745667 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
26745682 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
26745746 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
26745761 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
26745785 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 44 0.52
80 27 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:26745770 original size:119 final size:120
Alignment explanation
Indices: 26745527--26745784 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 120
26745517 TTGAATGCTG
* * * * *
26745527 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* ** ** *
26745592 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAT
66 GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAT
* * * *
26745647 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * *
26745709 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCT-AT
64 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAT
*
26745765 ATCC-GGTTAAATCCCGAAGG
1 -TCCGGGTTAAGTCCCGAAGG
26745785 TACGTGATTT
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
118 17 0.15
119 49 0.43
120 39 0.34
121 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAT
Found at i:26748337 original size:16 final size:16
Alignment explanation
Indices: 26748318--26748349 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26748308 AATTGTTTTA
26748318 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
26748334 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
26748350 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:26756556 original size:47 final size:47
Alignment explanation
Indices: 26756504--26756842 Score: 518
Period size: 47 Copynumber: 7.2 Consensus size: 47
26756494 AAGATATGTG
*
26756504 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
26756551 TATGTGACAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
26756598 TATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
26756645 TATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
26756692 TATGTGATAAGGCCGAATGGCCGATGTGATG-ATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * *
26756738 TATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATA
1 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
26756785 TATGTGATAAGGTCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
26756832 AATGTGATAAG
1 TATGTGATAAG
26756843 TCCCGAAGGG
Statistics
Matches: 265, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 43 0.16
47 222 0.84
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:26756823 original size:187 final size:188
Alignment explanation
Indices: 26756504--26756842 Score: 565
Period size: 187 Copynumber: 1.8 Consensus size: 188
26756494 AAGATATGTG
* *
26756504 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGACAAGACCTAAT
*
26756569 GGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGT
66 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGT
*
26756634 GAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
131 GAAAGTGTATAAATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
26756692 TATGTGATAAGGCCGAATGGCCGATGTGATG-ATGTGAAAGTGTATATATGAGATAAGACCTAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGACAAGACCTAAT
* * *
26756756 GGCCGATGTGATGGATGTGAAGGTGTATATATGTGATAAGG-TCGAATGGCCAATGTGATGGATG
66 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCT-GAATGGCCAATGTGATGAATG
*
26756820 TGAAAGTGTATAAATGTGATAAG
130 TGAAAGTGTATAAATGAGATAAG
26756843 TCCCGAAGGG
Statistics
Matches: 140, Mismatches: 10, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
186 1 0.01
187 109 0.78
188 30 0.21
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (188 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGACAAGACCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGT
GAAAGTGTATAAATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:26762493 original size:50 final size:50
Alignment explanation
Indices: 26762411--26762607 Score: 171
Period size: 50 Copynumber: 3.9 Consensus size: 50
26762401 AAGACAGTTT
* * * * * * *
26762411 TAGGTCACGTGTGTAGTACTAATTGGAAGCTACTACGTGTACCAGATTGA
1 TAGGTTACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGA
* * * *
26762461 TAGGTTTCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAA
1 TAGGTTACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGA
* * * * ** *
26762510 CTTTGATTACGTGTGTAGCACTAAGTGCAGGCTACTATATGTTCCAGATTGA
1 --TAGGTTACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGA
* ** *
26762562 TACGTCGCATGTGTAGTACTAAGTGCATGCTACTATGCGTACCAGA
1 TAGGTTACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
26762608 GAGCTTCAGT
Statistics
Matches: 111, Mismatches: 33, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
49 3 0.03
50 70 0.63
51 35 0.32
52 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (50 bp):
TAGGTTACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGA
Found at i:26762546 original size:101 final size:101
Alignment explanation
Indices: 26762417--26762604 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 101
26762407 GTTTTAGGTC
* * * * * **
26762417 ACGTGTGTAGTACTAATTGGAAGCTACTACGTGTACCAGATTGATAGGTTTCATGTGTAGTACTA
1 ACGTGTGTAGCACTAAGTGCAAGCTACTACATGTACCAGATTGATACGTCGCATGTGTAGTACTA
26762482 AGTGCAGGCTACTATGCATACCCGTTAACTTTGATT
66 AGTGCAGGCTACTATGCATACCCGTTAACTTTGATT
* * *
26762518 ACGTGTGTAGCACTAAGTGCAGGCTACTATATGTTCCAGATTGATACGTCGCATGTGTAGTACTA
1 ACGTGTGTAGCACTAAGTGCAAGCTACTACATGTACCAGATTGATACGTCGCATGTGTAGTACTA
* *
26762583 AGTGCATGCTACTATGCGTACC
66 AGTGCAGGCTACTATGCATACC
26762605 AGAGAGCTTC
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (101 bp):
ACGTGTGTAGCACTAAGTGCAAGCTACTACATGTACCAGATTGATACGTCGCATGTGTAGTACTA
AGTGCAGGCTACTATGCATACCCGTTAACTTTGATT
Found at i:26763948 original size:20 final size:20
Alignment explanation
Indices: 26763911--26763956 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
26763901 TAGGGACAAA
* *
26763911 AATGAAAAGTTGTAAAATTT
1 AATGAAAACTTCTAAAATTT
*
26763931 AATGAAAACTTCTGAAATTT
1 AATGAAAACTTCTAAAATTT
*
26763951 TATGAA
1 AATGAA
26763957 TACATGTGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.04, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGAAAACTTCTAAAATTT
Found at i:26767419 original size:12 final size:13
Alignment explanation
Indices: 26767383--26767420 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
26767373 AAATATTTGA
26767383 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
26767396 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
26767410 CTTG-TCTTAAT
1 CTTGTTCTTAAT
26767421 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:26773196 original size:7 final size:8
Alignment explanation
Indices: 26773179--26773203 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26773169 GTTTAAAGAC
26773179 TTTTTATT
1 TTTTTATT
26773187 TTTTTATT
1 TTTTTATT
26773195 TTTTTATT
1 TTTTTATT
26773203 T
1 T
26773204 CCACTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTATT
Found at i:26773260 original size:25 final size:27
Alignment explanation
Indices: 26773219--26773274 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 27
26773209 TTTATCTTTG
26773219 TTTATCTTCTTTAAATACT-TTTT-AT
1 TTTATCTTCTTTAAATACTATTTTAAT
* *
26773244 TTTATTTTCCTTT-AATATTATTTTAAT
1 TTTATCTT-CTTTAAATACTATTTTAAT
26773271 TTTA
1 TTTA
26773275 GGTTCTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 12 0.46
26 8 0.31
27 6 0.23
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (27 bp):
TTTATCTTCTTTAAATACTATTTTAAT
Found at i:26778635 original size:19 final size:18
Alignment explanation
Indices: 26778599--26778645 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
26778589 TAGGCTATTC
26778599 TGGGCCTCGT-TGGGCTAAA
1 TGGG-CTCGTGTGGGCT-AA
26778618 TGGG-TCGTGTGGGTCTAA
1 TGGGCTCGTGTGGG-CTAA
26778636 TGGGCTCGTG
1 TGGGCTCGTG
26778646 GGCCCCACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.16
18 10 0.40
19 11 0.44
ACGTcount: A:0.11, C:0.17, G:0.43, T:0.30
Consensus pattern (18 bp):
TGGGCTCGTGTGGGCTAA
Found at i:26778899 original size:27 final size:27
Alignment explanation
Indices: 26778869--26778955 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
26778859 CCCTGATTCT
* *
26778869 TAAAATTACCAAAATACCCACG-ATTTG
1 TAAAATTACCGAAATACCCACGTA-GTG
**
26778896 TAAAATTACCGAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCCACGTAGTG
** *
26778923 TAAAATTACCGAAATACCCTTGTAGGG
1 TAAAATTACCGAAATACCCACGTAGTG
26778950 TAAAAT
1 TAAAAT
26778956 AAATGTTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCACGTAGTG
Found at i:26782765 original size:27 final size:28
Alignment explanation
Indices: 26782734--26782795 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 28
26782724 GACCCTGGTT
26782734 TGTAAAATTACCAAAATACCCTTGT-AG
1 TGTAAAATTACCAAAATACCCTTGTAAG
*
26782761 TGTAAAATTACCGAAATACCCTTGTAAG
1 TGTAAAATTACCAAAATACCCTTGTAAG
26782789 -GTAAAAT
1 TGTAAAAT
26782796 AACTATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
27 31 0.94
28 2 0.06
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (28 bp):
TGTAAAATTACCAAAATACCCTTGTAAG
Found at i:26784189 original size:16 final size:17
Alignment explanation
Indices: 26784157--26784189 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26784147 AAATAAGAAG
26784157 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
26784175 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
26784190 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:26787026 original size:5 final size:5
Alignment explanation
Indices: 26787016--26787042 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26787006 TGATGCAACT
26787016 ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT
26787043 TTTATTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:26790881 original size:19 final size:19
Alignment explanation
Indices: 26790857--26790900 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
26790847 GTTATCGCAT
26790857 AGAGTGAATCTACCTGATG
1 AGAGTGAATCTACCTGATG
26790876 AGAGTGAATCTACCTGATG
1 AGAGTGAATCTACCTGATG
26790895 AGAGTG
1 AGAGTG
26790901 TAGGCCCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.25
Consensus pattern (19 bp):
AGAGTGAATCTACCTGATG
Found at i:26796627 original size:16 final size:16
Alignment explanation
Indices: 26796603--26796638 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
26796593 TGTACGCTTT
26796603 TGAAATTGTGAAATTA
1 TGAAATTGTGAAATTA
*
26796619 TGAAGTTGTGAAATTA
1 TGAAATTGTGAAATTA
26796635 TGAA
1 TGAA
26796639 CATACATGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (16 bp):
TGAAATTGTGAAATTA
Found at i:26799381 original size:49 final size:47
Alignment explanation
Indices: 26799321--26799776 Score: 709
Period size: 47 Copynumber: 9.6 Consensus size: 47
26799311 GATAATTGTG
* *
26799321 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26799368 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26799417 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26799466 ATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCG-TGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26799511 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26799558 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG-A
26799606 TGTGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ----ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26799657 ATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
26799704 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26799751 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
26799777 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 16, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
45 13 0.03
46 59 0.15
47 170 0.44
48 6 0.02
49 90 0.23
51 1 0.00
52 45 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:26799748 original size:146 final size:141
Alignment explanation
Indices: 26799320--26799776 Score: 711
Period size: 146 Copynumber: 3.2 Consensus size: 141
26799310 GGATAATTGT
* *
26799320 GATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 GATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-T-TATA
26799385 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
26799450 ATGGCCGATGTGATG
127 ATGGCCGATGTGATG
* *
26799465 AATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCG-TGTGATGAATGTGAAAGTGTATATA
1 GATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATA
*
26799528 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
26799593 CCGATGTGATGAATG
131 CCGA--TG-TG-ATG
26799608 TGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATAT
1 -GATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATAT
* * * *
26799673 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
65 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
26799738 GCCAACGTGATG
130 GCCGATGTGATG
*
26799750 GATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGAAAGTGTATATATGTGATAAG
26799777 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 15, Indels: 18
0.90 0.05 0.06
Matches are distributed among these distances:
139 27 0.09
141 75 0.26
142 5 0.02
143 23 0.08
144 36 0.12
145 37 0.13
146 87 0.30
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (141 bp):
GATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATG
Found at i:26799953 original size:37 final size:37
Alignment explanation
Indices: 26799895--26799973 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
26799885 CCGAGCTCTA
* * * *
26799895 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
*
26799932 AAGACCCGATAACTTCATGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
26799969 AAGAC
1 AAGAC
26799974 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:26801505 original size:159 final size:159
Alignment explanation
Indices: 26801189--26801578 Score: 645
Period size: 159 Copynumber: 2.4 Consensus size: 159
26801179 GAGAATTGAG
*
26801189 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
* *
26801254 AAAAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
65 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
*
26801319 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT
130 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
26801349 AGTGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
26801414 AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
66 AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
*
26801479 CGGGCTAAGTCCCGAGGAGCATTCGTGCT
131 CGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** * * * * *
26801508 AGTGATATATCCGTGCTAAACCCGAAGAGCATTCGTGCTGGTGTTATATCCAGGCTAGGTCTCGA
1 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
26801573 AGAGCA
66 AGAGCA
26801579 ATCATGCTGG
Statistics
Matches: 215, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
159 194 0.90
160 21 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (159 bp):
AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
CGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:26801590 original size:40 final size:40
Alignment explanation
Indices: 26801189--26801578 Score: 613
Period size: 40 Copynumber: 9.8 Consensus size: 40
26801179 GAGAATTGAG
26801189 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26801229 AGTGATATATCTGGGCTAAGTCCCGAAAAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26801269 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26801309 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
26801349 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
26801388 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26801428 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
26801468 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26801508 AGTGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
26801547 GGTGTTATATCCAGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
26801579 ATCATGCTGG
Statistics
Matches: 324, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 70 0.22
40 254 0.78
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:26805415 original size:49 final size:47
Alignment explanation
Indices: 26805355--26805808 Score: 682
Period size: 47 Copynumber: 9.6 Consensus size: 47
26805345 GATAATTGTG
* *
26805355 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26805402 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26805451 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26805500 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26805547 ATGTGAAAGTG--TATAT-TG-TAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26805590 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG-A
26805638 TGTGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ----ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26805689 ATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
26805736 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26805783 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
26805809 TCCCGAAGGG
Statistics
Matches: 378, Mismatches: 18, Indels: 22
0.90 0.04 0.05
Matches are distributed among these distances:
43 35 0.09
44 2 0.01
45 10 0.03
46 2 0.01
47 186 0.49
48 1 0.00
49 96 0.25
51 1 0.00
52 45 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:26805706 original size:189 final size:186
Alignment explanation
Indices: 26805368--26805808 Score: 670
Period size: 189 Copynumber: 2.3 Consensus size: 186
26805358 TGAATGTATA
*
26805368 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATATG-TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
26805433 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
63 TAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
26805498 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTG
127 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
26805558 TATAT-TGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TATATATGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
26805622 TAGCCGATGTGATGAATGTGATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGA
66 TAGCCGATGTGATG-A----ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGA
*
26805686 TGAATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
126 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * *
26805747 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGT-A-A-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26805809 TCCCGAAGGG
Statistics
Matches: 233, Mismatches: 9, Indels: 15
0.91 0.04 0.06
Matches are distributed among these distances:
186 34 0.15
187 1 0.00
188 36 0.15
189 99 0.42
190 8 0.03
191 12 0.05
192 1 0.00
193 42 0.18
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (186 bp):
TATATATGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:26805985 original size:37 final size:37
Alignment explanation
Indices: 26805927--26806005 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
26805917 CCGAGCTCTA
* * * *
26805927 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
*
26805964 AAGACCCGATAACTTCATGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
26806001 AAGAC
1 AAGAC
26806006 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:26807624 original size:40 final size:40
Alignment explanation
Indices: 26807221--26807612 Score: 622
Period size: 40 Copynumber: 9.8 Consensus size: 40
26807211 GAGAATTGAG
26807221 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26807261 AGTGATATATCTGGGCTAAGTCCCGAAAAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26807301 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26807341 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
26807381 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
26807421 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26807461 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
26807501 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
26807541 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
26807581 GGTGTTATATCCAGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
26807613 ATCATGCTGG
Statistics
Matches: 325, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 325 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:26811446 original size:47 final size:47
Alignment explanation
Indices: 26811394--26811895 Score: 851
Period size: 47 Copynumber: 10.6 Consensus size: 47
26811384 GATAATTGTG
* *
26811394 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26811441 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26811490 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26811539 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26811588 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26811635 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26811682 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26811729 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26811776 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
26811823 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26811870 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
26811896 TCCCGAAGGG
Statistics
Matches: 439, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 294 0.67
49 145 0.33
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:26812070 original size:37 final size:37
Alignment explanation
Indices: 26812014--26812092 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26812004 CCGAGCTCTA
* * *
26812014 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
26812051 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26812088 AAGAC
1 AAGAC
26812093 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26815410 original size:19 final size:19
Alignment explanation
Indices: 26815381--26815480 Score: 132
Period size: 19 Copynumber: 5.3 Consensus size: 19
26815371 AATCTTTAAG
*
26815381 GATAAGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
26815400 GATATGAAATCTTAAATAT
1 GATATGCAATCTTAGATAT
*
26815419 GATA--CTATCTTAGATAT
1 GATATGCAATCTTAGATAT
26815436 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26815455 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
26815476 GATAT
1 GATAT
26815481 TGTAATCTTG
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
17 14 0.20
19 45 0.64
21 11 0.16
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26815411 original size:36 final size:36
Alignment explanation
Indices: 26815371--26815489 Score: 91
Period size: 36 Copynumber: 3.2 Consensus size: 36
26815361 ATGGAAATAT
*
26815371 AATCTTTAAGGATAAGCAATCTTAGATATGATATGA
1 AATCTTTAAAGATAAGCAATCTTAGATATGATATGA
* * *
26815407 AATC-TTAAATATGATA-CTATCTTAGATATGATATGC
1 AATCTTTAAAGAT-A-AGCAATCTTAGATATGATATGA
* *
26815443 AATC-TTAGATATGATATGCAATCTTGAAGATATGATATTGT
1 AATCTTTA-A-A-GATAAGCAATCTT--AGATATGATA-TGA
26815484 AATCTT
1 AATCTT
26815490 GGAGATTTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
35 6 0.09
36 30 0.46
37 2 0.03
38 8 0.12
39 2 0.03
40 10 0.15
41 6 0.09
42 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (36 bp):
AATCTTTAAAGATAAGCAATCTTAGATATGATATGA
Found at i:26818330 original size:33 final size:34
Alignment explanation
Indices: 26818268--26818366 Score: 94
Period size: 33 Copynumber: 2.9 Consensus size: 34
26818258 TTACACATTA
** * * *
26818268 CCAGAAACATATGTCAAATTAGAACGTCATATTT
1 CCAGAAACATATACCAGATCAGAAAGTCATATTT
*
26818302 CCA-TAACATATACCAGATCAGAAAGTCATATTT
1 CCAGAAACATATACCAGATCAGAAAGTCATATTT
* * *
26818335 TCAGAAACATATATCATATCA-AAATGTCATAT
1 CCAGAAACATATACCAGATCAGAAA-GTCATAT
26818367 CATATCAGAA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
33 29 0.55
34 24 0.45
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.29
Consensus pattern (34 bp):
CCAGAAACATATACCAGATCAGAAAGTCATATTT
Found at i:26820437 original size:29 final size:28
Alignment explanation
Indices: 26820397--26820480 Score: 91
Period size: 29 Copynumber: 3.0 Consensus size: 28
26820387 AAGCATGTAA
26820397 AAAGAA-AAGAAAAGAAAAATGAAAGAAG
1 AAAGAAGAAGAAAAGAAAAATGAAA-AAG
* * *
26820425 AAAGAAGAAGAAAAGGAAAAGGAAAAAT
1 AAAGAAGAAGAAAAGAAAAATGAAAAAG
*
26820453 AAAGTAAGAA-AAAAAAAGAAATGAAAAA
1 AAAG-AAGAAGAAAAGAA-AAATGAAAAA
26820481 ATGTTAAAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
28 17 0.36
29 30 0.64
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (28 bp):
AAAGAAGAAGAAAAGAAAAATGAAAAAG
Found at i:26820462 original size:36 final size:34
Alignment explanation
Indices: 26820395--26820479 Score: 109
Period size: 36 Copynumber: 2.4 Consensus size: 34
26820385 GAAAGCATGT
*
26820395 AAAAAGAAAAGAAAAGAAAAATGAAAGAAGAAAG
1 AAAAAGAAAAGAAAAGAAAAATGAAAGAAGAAAA
*
26820429 AAGAAGAAAAGGAAAAGGAAAAAT-AAAGTAAGAAAA
1 AAAAAGAAAA-GAAAA-GAAAAATGAAAG-AAGAAAA
*
26820465 AAAAAGAAATGAAAA
1 AAAAAGAAAAGAAAA
26820480 AATGTTAAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
34 9 0.20
35 14 0.32
36 21 0.48
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (34 bp):
AAAAAGAAAAGAAAAGAAAAATGAAAGAAGAAAA
Found at i:26820480 original size:15 final size:14
Alignment explanation
Indices: 26820395--26820481 Score: 56
Period size: 14 Copynumber: 6.1 Consensus size: 14
26820385 GAAAGCATGT
26820395 AAAAAGAAAAGAAAA
1 AAAAAG-AAAGAAAA
*
26820410 GAAAAATGAAAGAAGA
1 -AAAAA-GAAAGAAAA
*
26820426 AAGAAG-AAGAAAA
1 AAAAAGAAAGAAAA
*
26820439 GGAAAAG---GAAAA
1 -AAAAAGAAAGAAAA
* *
26820451 ATAAAGTAAGAAAA
1 AAAAAGAAAGAAAA
26820465 AAAAAGAAATGAAAA
1 AAAAAGAAA-GAAAA
26820480 AA
1 AA
26820482 TGTTAAAGAA
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
11 4 0.07
12 5 0.09
13 6 0.11
14 17 0.30
15 11 0.20
16 12 0.21
17 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.05
Consensus pattern (14 bp):
AAAAAGAAAGAAAA
Found at i:26825385 original size:17 final size:19
Alignment explanation
Indices: 26825363--26825397 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
26825353 TATGTGTATA
26825363 GTAAGTA-AAAT-TTTAAG
1 GTAAGTATAAATATTTAAG
26825380 GTAAGTATAAATATTTAA
1 GTAAGTATAAATATTTAA
26825398 TTTAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 4 0.25
19 5 0.31
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (19 bp):
GTAAGTATAAATATTTAAG
Found at i:26826057 original size:23 final size:22
Alignment explanation
Indices: 26826018--26826127 Score: 95
Period size: 23 Copynumber: 5.0 Consensus size: 22
26826008 GGGTTTACCA
26826018 ATCAGGCACTTATGTGTCGTAT
1 ATCAGGCACTTATGTGTCGTAT
26826040 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCAC-TTATGTGTCGTAT
* *
26826063 TTCAGGTACCTCT-TGTGTC--AT
1 ATCAGGCA-CT-TATGTGTCGTAT
* * *
26826084 ATCAGGCACCT-GGTAT-GTCAT
1 ATCAGGCACTTATGTGTCGT-AT
*
26826105 TTCAGGCACTTATGTGTCGTAT
1 ATCAGGCACTTATGTGTCGTAT
26826127 A
1 A
26826128 CTGATCAGGT
Statistics
Matches: 68, Mismatches: 12, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
19 4 0.06
20 1 0.01
21 19 0.28
22 14 0.21
23 28 0.41
24 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (22 bp):
ATCAGGCACTTATGTGTCGTAT
Found at i:26826094 original size:21 final size:21
Alignment explanation
Indices: 26826038--26826113 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
26826028 TATGTGTCGT
*
26826038 ATATCAGGCA-CTTTATGTGTC
1 ATATCAGGCACCTCT-TGTGTC
* *
26826059 GTATTTCAGGTACCTCTTGTGTC
1 --ATATCAGGCACCTCTTGTGTC
** *
26826082 ATATCAGGCACCTGGTATGTC
1 ATATCAGGCACCTCTTGTGTC
*
26826103 ATTTCAGGCAC
1 ATATCAGGCAC
26826114 TTATGTGTCG
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
21 26 0.60
23 14 0.33
24 3 0.07
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (21 bp):
ATATCAGGCACCTCTTGTGTC
Found at i:26831149 original size:16 final size:16
Alignment explanation
Indices: 26831110--26831150 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
26831100 TAACCCAAAT
26831110 TAAATTAGATTAAATTA
1 TAAATTA-ATTAAATTA
*
26831127 -AAATTAATTATATTA
1 TAAATTAATTAAATTA
26831142 TAAATTAAT
1 TAAATTAAT
26831151 ACACATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
TAAATTAATTAAATTA
Found at i:26834188 original size:25 final size:26
Alignment explanation
Indices: 26834159--26834214 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
26834149 TTAATCAGTA
*
26834159 TAAAATATTAA-TAATTCAAT-AAAT
1 TAAAATATTAATTAATTAAATAAAAT
26834183 TGAAAA-ATTAATTAATTAAATAAAAT
1 T-AAAATATTAATTAATTAAATAAAAT
26834209 TAAAAT
1 TAAAAT
26834215 TTAGGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 6 0.22
25 16 0.59
26 5 0.19
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (26 bp):
TAAAATATTAATTAATTAAATAAAAT
Found at i:26853181 original size:49 final size:49
Alignment explanation
Indices: 26853112--26853244 Score: 153
Period size: 49 Copynumber: 2.7 Consensus size: 49
26853102 GCACATTAAA
** * *
26853112 GTCAATGCTGTGTCCTAGACAGGTCTTACACTGACTTTCATATATCGAG-
1 GTCAATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GT
* ** *
26853161 G-CTAATGCCATGTCCCAGACAGGTCTTACATTGGGTCTCATCTATCGGT
1 GTC-AATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGT
*
26853210 GTCGATGCCATGTCCCAGACAGGTCTTACACTGAC
1 GTCAATGCCATGTCCCAGACAGGTCTTACACTGAC
26853245 ACACAACAAG
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
48 2 0.03
49 66 0.96
50 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (49 bp):
GTCAATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGT
Found at i:26857363 original size:40 final size:40
Alignment explanation
Indices: 26857280--26857425 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
26857270 TTGAATGATG
* * * *
26857280 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
26857320 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26857360 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26857401 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26857426 AACGAGGAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 81 0.87
41 11 0.12
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26857443 original size:80 final size:80
Alignment explanation
Indices: 26857280--26857458 Score: 179
Period size: 80 Copynumber: 2.2 Consensus size: 80
26857270 TTGAATGATG
*
26857280 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
** *
26857345 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* * * * *
26857360 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAAT-CGGGCTATG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-ATCCGGACTAAGAT-CCGAAGGCA
*
26857422 TTTGAACGAG-GAGCTATA
63 TTTGAACGAGTGA-CTAAA
* *
26857440 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26857459 TACGTGATTT
Statistics
Matches: 83, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
79 16 0.19
80 58 0.70
81 9 0.11
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:26865339 original size:40 final size:40
Alignment explanation
Indices: 26865204--26865390 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
26865194 TTGAATGATG
* * * *
26865204 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26865244 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAATA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
26865285 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26865325 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26865366 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26865391 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
40 85 0.66
41 44 0.34
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26865344 original size:81 final size:81
Alignment explanation
Indices: 26865204--26865390 Score: 236
Period size: 81 Copynumber: 2.3 Consensus size: 81
26865194 TTGAATGATG
* *
26865204 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
26865268 TGTGCGAGATACTAATA
66 TGTGCGAGATACT-ATA
* * * * **
26865285 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
26865348 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
26865365 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26865391 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
80 27 0.29
81 58 0.63
82 7 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:26867301 original size:43 final size:43
Alignment explanation
Indices: 26867237--26867323 Score: 117
Period size: 43 Copynumber: 2.0 Consensus size: 43
26867227 ATATCTGATT
*
26867237 TCGATATGTGTGTACGAGTAAGACCCTGTCTGGGACAG-TGGCA
1 TCGATATGTGTGTACGAGTAAGACCATGTCTGGGAC-GTTGGCA
26867280 TCGATATGTG-GCTAC-ATGTAAGACCATGTCTGGGACGTTGGCA
1 TCGATATGTGTG-TACGA-GTAAGACCATGTCTGGGACGTTGGCA
26867323 T
1 T
26867324 TGTATGATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 3 0.08
43 37 0.93
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (43 bp):
TCGATATGTGTGTACGAGTAAGACCATGTCTGGGACGTTGGCA
Found at i:26880802 original size:27 final size:26
Alignment explanation
Indices: 26880764--26880850 Score: 111
Period size: 27 Copynumber: 3.3 Consensus size: 26
26880754 TGGAGGAAGC
*
26880764 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
26880791 GTTCTGGTGGCTCTGCCACAATATTT
1 GTTCTGGTGGCTCTGCCACAATATCT
* **
26880817 GTATCTGGTGACTCTTTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
26880844 GTTCTGG
1 GTTCTGG
26880851 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 13 0.25
27 40 0.75
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:26888087 original size:16 final size:15
Alignment explanation
Indices: 26888049--26888087 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
26888039 TAGATCGACA
26888049 AAAGCCGAAAAGCTG
1 AAAGCCGAAAAGCTG
*
26888064 AAATGCCGAAATGCTG
1 AAA-GCCGAAAAGCTG
26888080 AAGAGCCG
1 AA-AGCCG
26888088 GTATTTTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 17 0.81
17 1 0.05
ACGTcount: A:0.41, C:0.21, G:0.28, T:0.10
Consensus pattern (15 bp):
AAAGCCGAAAAGCTG
Found at i:26888536 original size:27 final size:26
Alignment explanation
Indices: 26888498--26888584 Score: 111
Period size: 27 Copynumber: 3.3 Consensus size: 26
26888488 TGGCGGAAGC
*
26888498 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
26888525 GTTCTGGTGGCTCTGCCACAATATTT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
26888551 GTATCTAGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
26888578 GTTCTGG
1 GTTCTGG
26888585 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.23
27 40 0.77
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:26890470 original size:42 final size:42
Alignment explanation
Indices: 26890419--26890500 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
26890409 TAAAAAGAAA
* *
26890419 AAAATGAAAAATGAAA-GAAG-AAATAAGAAGAAAAGGAAAAGG
1 AAAAGGAAAAAT-AAAGGAAGAAAAAAAGAAG-AAAGGAAAAGG
26890461 AAAAGGAAAAATAAAGGAAGAAAAAAAGAAGAAAGGAAAA
1 AAAAGGAAAAATAAAGGAAGAAAAAAAGAAGAAAGGAAAA
26890501 AACATTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
41 3 0.08
42 24 0.67
43 9 0.25
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05
Consensus pattern (42 bp):
AAAAGGAAAAATAAAGGAAGAAAAAAAGAAGAAAGGAAAAGG
Found at i:26890487 original size:23 final size:23
Alignment explanation
Indices: 26890413--26890488 Score: 56
Period size: 23 Copynumber: 3.5 Consensus size: 23
26890403 AGCACATAAA
*
26890413 AAGAAAAAAATGAAAAATGAAA-G
1 AAGAAAAAAAGGAAAAAT-AAAGG
* *
26890436 AAG-AAATAA-G-AAGA-AAAGG
1 AAGAAAAAAAGGAAAAATAAAGG
*
26890455 AA-AAGGAAAAGGAAAAATAAAGG
1 AAGAA-AAAAAGGAAAAATAAAGG
26890478 AAGAAAAAAAG
1 AAGAAAAAAAG
26890489 AAGAAAGGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
18 3 0.08
19 4 0.10
20 6 0.15
21 2 0.05
22 8 0.20
23 15 0.38
24 2 0.05
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.05
Consensus pattern (23 bp):
AAGAAAAAAAGGAAAAATAAAGG
Found at i:26895364 original size:47 final size:47
Alignment explanation
Indices: 26895301--26895453 Score: 216
Period size: 47 Copynumber: 3.3 Consensus size: 47
26895291 GTCACAGTAA
***
26895301 TGTAGATAAACTGCCACTTAATAATATTGAAAACAAGCCACCACTTT
1 TGTAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
* * *
26895348 TGTAAATAAACCGCCACTTAATAAAATTGTGGACAAGCCACCACTTT
1 TGTAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
* * * *
26895395 TGCAGATAAACTGCCACTTTATAATATTGTGGGCAAGCCACCATTTT
1 TGTAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
26895442 TGTAGATAAACT
1 TGTAGATAAACT
26895454 ACAACTTCTT
Statistics
Matches: 92, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.29
Consensus pattern (47 bp):
TGTAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
Found at i:26895530 original size:20 final size:20
Alignment explanation
Indices: 26895505--26895544 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26895495 GATTGGCTAC
* *
26895505 AAAAATCACTTTTTCACTTT
1 AAAAATCAATATTTCACTTT
26895525 AAAAATCAATATTTCACTTT
1 AAAAATCAATATTTCACTTT
26895545 GGCATGTGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAAATCAATATTTCACTTT
Found at i:26897314 original size:48 final size:48
Alignment explanation
Indices: 26897243--26897457 Score: 195
Period size: 48 Copynumber: 4.8 Consensus size: 48
26897233 CATTAGGGTT
*
26897243 ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGACATCG
*
26897291 ATATGAGATCCCATGGAAGACCATGT-T------TGG----GACAT-G
1 ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGACATCG
* * *
26897327 ATATGAGATCCCACGTAAGACCATGTCTGGGACATGGAATTGACATCG
1 ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGACATCG
* * * * *
26897375 ATATGAGATCCCATATAAGACCATATCTATGATATGGCATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGACATCG
* **** *
26897423 ATAT-TGATTTTGTGTAAGACCATGTCTGGGACATG
1 ATATGAGATCCCATGTAAGACCATGTCTAGGACATG
26897458 ACATCGATGT
Statistics
Matches: 133, Mismatches: 22, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
36 25 0.19
37 5 0.04
41 3 0.02
43 3 0.02
47 27 0.20
48 70 0.53
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (48 bp):
ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGACATCG
Found at i:26897330 original size:36 final size:36
Alignment explanation
Indices: 26897290--26897362 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
26897280 CATTGGCATC
* *
26897290 GATATGAGATCCCATGGAAGACCATGTTTGGGACAT
1 GATATGAGATCCCACGGAAGACCATGTCTGGGACAT
*
26897326 GATATGAGATCCCACGTAAGACCATGTCTGGGACAT
1 GATATGAGATCCCACGGAAGACCATGTCTGGGACAT
26897362 G
1 G
26897363 GAATTGACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (36 bp):
GATATGAGATCCCACGGAAGACCATGTCTGGGACAT
Found at i:26897384 original size:84 final size:84
Alignment explanation
Indices: 26897243--26897398 Score: 258
Period size: 84 Copynumber: 1.9 Consensus size: 84
26897233 CATTAGGGTT
* * * *
26897243 ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATGAGATCCCATGGA
1 ATATGAGATCCCACGTAAGACCATGTCTAGGACATGGAATTGACATCGATATGAGATCCCATAGA
26897308 AGACCATGTTTGGGACATG
66 AGACCATGTTTGGGACATG
* *
26897327 ATATGAGATCCCACGTAAGACCATGTCTGGGACATGGAATTGACATCGATATGAGATCCCATATA
1 ATATGAGATCCCACGTAAGACCATGTCTAGGACATGGAATTGACATCGATATGAGATCCCATAGA
26897392 AGACCAT
66 AGACCAT
26897399 ATCTATGATA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
84 66 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (84 bp):
ATATGAGATCCCACGTAAGACCATGTCTAGGACATGGAATTGACATCGATATGAGATCCCATAGA
AGACCATGTTTGGGACATG
Found at i:26901021 original size:28 final size:28
Alignment explanation
Indices: 26900989--26901042 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
26900979 ACAAGTGGAC
* * *
26900989 ACACGGGCGTCTGTCTAGGCCGTGTGTG
1 ACACGAGCGTCTGTCTAAGCCATGTGTG
26901017 ACACGAGCGTCTGTCTAAGCCATGTG
1 ACACGAGCGTCTGTCTAAGCCATGTG
26901043 CCTTGGCCGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.24
Consensus pattern (28 bp):
ACACGAGCGTCTGTCTAAGCCATGTGTG
Found at i:26913592 original size:24 final size:23
Alignment explanation
Indices: 26913548--26913592 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
26913538 CATAAGATAG
*
26913548 TAAAAATATATAACTAGTAATGT
1 TAAAAATATATAACTAATAATGT
26913571 TAAAATATATATAA-TATATAAT
1 TAAAA-ATATATAACTA-ATAAT
26913593 ATATATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (23 bp):
TAAAAATATATAACTAATAATGT
Found at i:26913925 original size:9 final size:10
Alignment explanation
Indices: 26913913--26913970 Score: 52
Period size: 9 Copynumber: 6.0 Consensus size: 10
26913903 ATAATATTAT
26913913 ATAAAT-ATA
1 ATAAATAATA
26913922 ATAAATAATA
1 ATAAATAATA
26913932 AT-AATAATA
1 ATAAATAATA
*
26913941 AT-AACAATA
1 ATAAATAATA
26913950 ATAGCAATAATA
1 ATA--AATAATA
*
26913962 GTAAA-AATA
1 ATAAATAATA
26913971 CAAAAGAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
9 27 0.64
10 7 0.17
12 8 0.19
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (10 bp):
ATAAATAATA
Found at i:26913961 original size:3 final size:3
Alignment explanation
Indices: 26913901--26913952 Score: 52
Period size: 3 Copynumber: 16.7 Consensus size: 3
26913891 AAGTACCTAT
* *
26913901 TAA TAA TAT TATA TAA -ATA TAA TAAA TAA TAA TAA TAA TAA TAA CAA
1 TAA TAA TAA TA-A TAA TA-A TAA T-AA TAA TAA TAA TAA TAA TAA TAA
26913948 TAA TA
1 TAA TA
26913953 GCAATAATAG
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 1 0.02
3 34 0.83
4 6 0.15
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:26914132 original size:3 final size:3
Alignment explanation
Indices: 26914124--26914414 Score: 126
Period size: 3 Copynumber: 95.3 Consensus size: 3
26914114 AATATTTATG
* * * *
26914124 AAT AAT AAT AGT AAT -GT AAT AAT AAT AAT AAT ATT AAGT -AT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
* * *
26914168 -AT AAAT AAT AAGT ACAT AAC AGT AAT AAT AAT AAGT AAC AAT AAT AAT
1 AAT -AAT AAT AA-T A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
26914216 AAT AAT AAT -AT AGA- AATT CAA- AA- AAGT AA- ACAT AAT -AT AAT
1 AAT AAT AAT AAT A-AT AA-T -AAT AAT AA-T AAT A-AT AAT AAT AAT
* * * * *
26914257 GAT ATT AA- AAT AA- AAT -AT ACACT AAT ATT TAT AAAT AAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT -AAT AAT AAT AAT
* * *
26914302 AA- ATAT AAT AAT AAT AAT AAG AAT AAT GAT AAT AAT AAT AAT ATT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
26914347 AAGT -AT AGT -AT AAAT AAT ATAT ACAT AAC AGT AAT AATT AAT AAGT
1 AA-T AAT AAT AAT -AAT AAT A-AT A-AT AAT AAT AAT AA-T AAT AA-T
*
26914393 AAC AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
26914415 TAGAAATTCA
Statistics
Matches: 216, Mismatches: 39, Indels: 66
0.67 0.12 0.21
Matches are distributed among these distances:
2 22 0.10
3 155 0.72
4 34 0.16
5 5 0.02
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26914384 original size:20 final size:21
Alignment explanation
Indices: 26914290--26914412 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 21
26914280 AATATTTATA
*
26914290 AATAATAATAGTAA-ATA-TAAT
1 AATAATAATA-TAATA-AGTAAC
* *
26914311 AATAATAATAAGAATAATGATAAT
1 AATAATAAT-ATAATAA-G-TAAC
*
26914335 AATAATAATAT--TAAGTATAG
1 AATAATAATATAATAAGTA-AC
*
26914355 TATAAATAATAT-ATACA-TAAC
1 AAT-AATAATATAATA-AGTAAC
*
26914376 AGTAATAAT-TAATAAGTAAC
1 AATAATAATATAATAAGTAAC
26914396 AATAATAATAATAATAA
1 AATAATAAT-ATAATAA
26914413 TATAGAAATT
Statistics
Matches: 81, Mismatches: 8, Indels: 25
0.71 0.07 0.22
Matches are distributed among these distances:
19 4 0.05
20 25 0.31
21 25 0.31
22 12 0.15
23 2 0.02
24 13 0.16
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (21 bp):
AATAATAATATAATAAGTAAC
Found at i:26914473 original size:16 final size:16
Alignment explanation
Indices: 26914440--26914472 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26914430 AACTAAACAT
*
26914440 AATATAATAATATTAA
1 AATAAAATAATATTAA
26914456 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
26914471 AA
1 AA
26914473 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:26921434 original size:36 final size:37
Alignment explanation
Indices: 26921364--26921435 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 37
26921354 CGGTACTCTA
* *
26921364 TGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCAT
1 TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCAT
*
26921401 TGGTGTGTAGGGATGGGT-GGTCGATTTTATCCCCA
1 TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCA
26921436 CATAATGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 16 0.50
37 16 0.50
ACGTcount: A:0.14, C:0.12, G:0.36, T:0.38
Consensus pattern (37 bp):
TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCAT
Found at i:26921445 original size:37 final size:37
Alignment explanation
Indices: 26921367--26921454 Score: 88
Period size: 37 Copynumber: 2.4 Consensus size: 37
26921357 TACTCTATGG
* * * **
26921367 TGTGTAGGGTTGGATGGGTTGATTTTATCCCCATTGG
1 TGTGTAGGGATGGATGGGTCGATTTTATCCCCAATAA
*
26921404 TGTGTAGGGATGGGT-GGTCGATTTTATCCCCACATAA
1 TGTGTAGGGATGGATGGGTCGATTTTATCCCCA-ATAA
* *
26921441 TGTGTCGGGTTGGA
1 TGTGTAGGGATGGA
26921455 CGGAGTTGGT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
36 16 0.39
37 25 0.61
ACGTcount: A:0.16, C:0.12, G:0.35, T:0.36
Consensus pattern (37 bp):
TGTGTAGGGATGGATGGGTCGATTTTATCCCCAATAA
Found at i:26935518 original size:24 final size:25
Alignment explanation
Indices: 26935491--26935558 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 25
26935481 ATATAAGTAG
* **
26935491 TATATATCTTATTTTTTAT-TTATT
1 TATATATATTATTCATTATATTATT
26935515 TATATA-ATTATTCATTATATTATT
1 TATATATATTATTCATTATATTATT
26935539 TATA-A-ATT-TT-ATTATATTAT
1 TATATATATTATTCATTATATTAT
26935559 ATATTTTACT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
21 10 0.25
22 2 0.05
23 13 0.32
24 15 0.38
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (25 bp):
TATATATATTATTCATTATATTATT
Found at i:26935564 original size:17 final size:16
Alignment explanation
Indices: 26935532--26935566 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
26935522 TTATTCATTA
26935532 TATTATTTATAAATTT
1 TATTATTTATAAATTT
*
26935548 TATTATATTATATATTT
1 TATTAT-TTATAAATTT
26935565 TA
1 TA
26935567 CTACGTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTATTTATAAATTT
Found at i:26945211 original size:96 final size:96
Alignment explanation
Indices: 26945053--26945227 Score: 262
Period size: 96 Copynumber: 1.8 Consensus size: 96
26945043 TGCCATCGAT
** *
26945053 GGGAACGATGGAGTTGACAAGGAGCCCAAGAAGCTTAGTTCAAACAAGGGAAACACTAAAGCCAA
1 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTAGTTCAAACAAAGGAAACACTAAAGCCAA
26945118 GAAGGCAAAGAGGAACAAGTCTATCATCGGA
66 GAAGGCAAAGAGGAACAAGTCTATCATCGGA
* * * *
26945149 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAAGGAAA-AGCTGAAGCCA
1 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTAGTTCAAACAAAGGAAACA-CTAAAGCCA
*
26945213 AGAGGGCAAAGAGGA
65 AGAAGGCAAAGAGGA
26945228 GTAAAAAGAA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 69 0.99
ACGTcount: A:0.41, C:0.17, G:0.32, T:0.10
Consensus pattern (96 bp):
GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTAGTTCAAACAAAGGAAACACTAAAGCCAA
GAAGGCAAAGAGGAACAAGTCTATCATCGGA
Found at i:26947083 original size:96 final size:96
Alignment explanation
Indices: 26946926--26947100 Score: 269
Period size: 96 Copynumber: 1.8 Consensus size: 96
26946916 TGTCATCGAT
** * * * *
26946926 GGGAACGATGGAGCAGACAATGAGCCCAAGAAGCTTTGTTCGAGCAAGGGAAACGCTGAAGCAAA
1 GGGAACGATGGAGCAGACAATGAGCCCAAGAAAATTGGTTCAAGCAAGGGAAAAGCCGAAGCAAA
26946991 AAGGGCAAAGAGGAACAAGTCTGTCACCAAA
66 AAGGGCAAAGAGGAACAAGTCTGTCACCAAA
* *
26947022 GGGAACGATGGAGTAGACAATGAGCCCAAGAAAATTGGTTCAAGCAAGGGAAAAGCCGAAGCCAA
1 GGGAACGATGGAGCAGACAATGAGCCCAAGAAAATTGGTTCAAGCAAGGGAAAAGCCGAAGCAAA
*
26947087 GAGGGCAAAGAGGA
66 AAGGGCAAAGAGGA
26947101 GCAAAAAGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 70 1.00
ACGTcount: A:0.41, C:0.17, G:0.32, T:0.10
Consensus pattern (96 bp):
GGGAACGATGGAGCAGACAATGAGCCCAAGAAAATTGGTTCAAGCAAGGGAAAAGCCGAAGCAAA
AAGGGCAAAGAGGAACAAGTCTGTCACCAAA
Found at i:26954375 original size:15 final size:15
Alignment explanation
Indices: 26954355--26954385 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26954345 TAGAGTAAAA
26954355 GGTGTCAGGTAGGCG
1 GGTGTCAGGTAGGCG
26954370 GGTGTCAGGTAGGCG
1 GGTGTCAGGTAGGCG
26954385 G
1 G
26954386 CACCAATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.55, T:0.19
Consensus pattern (15 bp):
GGTGTCAGGTAGGCG
Found at i:26954408 original size:27 final size:27
Alignment explanation
Indices: 26954370--26954444 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
26954360 CAGGTAGGCG
26954370 GGTGTCAGGTAGGCGGCACCAATGAAA
1 GGTGTCAGGTAGGCGGCACCAATGAAA
*
26954397 GGTGTCAGGTAGGCGGCACCAATGAAG
1 GGTGTCAGGTAGGCGGCACCAATGAAA
* * *
26954424 GGTGTTAAGTAGGCGACACCA
1 GGTGTCAGGTAGGCGGCACCA
26954445 GTTGTGCCTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.28, C:0.19, G:0.37, T:0.16
Consensus pattern (27 bp):
GGTGTCAGGTAGGCGGCACCAATGAAA
Found at i:26954724 original size:61 final size:61
Alignment explanation
Indices: 26954647--26954778 Score: 255
Period size: 61 Copynumber: 2.2 Consensus size: 61
26954637 TATATAGTTT
*
26954647 GTTTAGTGTTATTTTTATGTTTTGGTTTAAAGTTATTTTGTTTATTGTGATTTGTTAGTAA
1 GTTTTGTGTTATTTTTATGTTTTGGTTTAAAGTTATTTTGTTTATTGTGATTTGTTAGTAA
26954708 GTTTTGTGTTATTTTTATGTTTTGGTTTAAAGTTATTTTGTTTATTGTGATTTGTTAGTAA
1 GTTTTGTGTTATTTTTATGTTTTGGTTTAAAGTTATTTTGTTTATTGTGATTTGTTAGTAA
26954769 GTTTTGTGTT
1 GTTTTGTGTT
26954779 TAGATTATTG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 70 1.00
ACGTcount: A:0.17, C:0.00, G:0.20, T:0.62
Consensus pattern (61 bp):
GTTTTGTGTTATTTTTATGTTTTGGTTTAAAGTTATTTTGTTTATTGTGATTTGTTAGTAA
Found at i:26957748 original size:64 final size:64
Alignment explanation
Indices: 26957642--26957791 Score: 266
Period size: 64 Copynumber: 2.4 Consensus size: 64
26957632 TGAGCTTATG
* *
26957642 TAATTTATATAA-AAAATTTATATTACAAAGTTTGTTCTAATTAGATTATGGTTGTAATGTATT
1 TAATTTATATAACAAAATTTATATTACAAAGTTGGTTCCAATTAGATTATGGTTGTAATGTATT
*
26957705 TAGTTTATATAACAAAATTTATATTACAAAGTTGGTTCCAATTAGATTATGGTTGTAATGTATT
1 TAATTTATATAACAAAATTTATATTACAAAGTTGGTTCCAATTAGATTATGGTTGTAATGTATT
26957769 TAATTTATATAACAAAATTTATA
1 TAATTTATATAACAAAATTTATA
26957792 CTATAAAACT
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
63 11 0.13
64 71 0.87
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.45
Consensus pattern (64 bp):
TAATTTATATAACAAAATTTATATTACAAAGTTGGTTCCAATTAGATTATGGTTGTAATGTATT
Found at i:26958222 original size:33 final size:33
Alignment explanation
Indices: 26958176--26958255 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
26958166 AGGAGTACCA
* * * **
26958176 TACTACGGCGGATACGACCTAGGAGAAGTGAAG
1 TACTGCGGTGGATACGACCCAAAAGAAGTGAAG
26958209 TACTGCGGTGGATACGACCCAAAAGAAGTGAAG
1 TACTGCGGTGGATACGACCCAAAAGAAGTGAAG
*
26958242 TACTGCGATGGATA
1 TACTGCGGTGGATA
26958256 TGGGCCGAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.17
Consensus pattern (33 bp):
TACTGCGGTGGATACGACCCAAAAGAAGTGAAG
Found at i:26958303 original size:33 final size:32
Alignment explanation
Indices: 26958266--26958374 Score: 85
Period size: 33 Copynumber: 3.3 Consensus size: 32
26958256 TGGGCCGAGG
26958266 GGAGTGTTGTAATGCGATGGATACAGGCTAGGA
1 GGAGTGTTGTAATGCGATGGATACAGGC-AGGA
* * * * * * *
26958299 GGAGTGCTATACTGTGGTGGATACGGGCCGGA
1 GGAGTGTTGTAATGCGATGGATACAGGCAGGA
* * * *
26958331 GGAGTGTTGTACTG-TAGTGGATACTAGCCGGGA
1 GGAGTGTTGTAATGCGA-TGGATAC-AGGCAGGA
26958364 GGAGTGTTGTA
1 GGAGTGTTGTA
26958375 CTACAGTGGA
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
32 22 0.37
33 38 0.63
ACGTcount: A:0.22, C:0.11, G:0.41, T:0.26
Consensus pattern (32 bp):
GGAGTGTTGTAATGCGATGGATACAGGCAGGA
Done.