Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 87 of 333
Found at i:26958375 original size:33 final size:32
Alignment explanation
Indices: 26958296--26958387 Score: 112
Period size: 32 Copynumber: 2.8 Consensus size: 32
26958286 ATACAGGCTA
* * * *
26958296 GGAGGAGTGCTATACTGTGGTGGATACGGGCC
1 GGAGGAGTGTTGTACTGTAGTGGATACGAGCC
*
26958328 GGAGGAGTGTTGTACTGTAGTGGATACTAGCC
1 GGAGGAGTGTTGTACTGTAGTGGATACGAGCC
**
26958360 GGGAGGAGTGTTGTACTACAGTGGATAC
1 -GGAGGAGTGTTGTACTGTAGTGGATAC
26958388 AACCCAAAGA
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
32 27 0.52
33 25 0.48
ACGTcount: A:0.22, C:0.13, G:0.40, T:0.25
Consensus pattern (32 bp):
GGAGGAGTGTTGTACTGTAGTGGATACGAGCC
Found at i:26959981 original size:33 final size:33
Alignment explanation
Indices: 26959938--26960044 Score: 126
Period size: 33 Copynumber: 3.3 Consensus size: 33
26959928 TCTTTGGGTA
*
26959938 GTATCCACCGCAGTACAACACTCCTCCCGGCCC
1 GTATCCACCGCAGTACAGCACTCCTCCCGGCCC
* * * * * *
26959971 ATATCCACCGCAGTATAGTACTTCTCGCAGCCC
1 GTATCCACCGCAGTACAGCACTCCTCCCGGCCC
* *
26960004 GTATCCACTGCATTACAGCACTCC-CCCGGCCC
1 GTATCCACCGCAGTACAGCACTCCTCCCGGCCC
26960036 GTATCCACC
1 GTATCCACC
26960045 ACAATACTCC
Statistics
Matches: 58, Mismatches: 16, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
32 14 0.24
33 44 0.76
ACGTcount: A:0.21, C:0.44, G:0.15, T:0.20
Consensus pattern (33 bp):
GTATCCACCGCAGTACAGCACTCCTCCCGGCCC
Found at i:26960523 original size:69 final size:64
Alignment explanation
Indices: 26960462--26960618 Score: 210
Period size: 64 Copynumber: 2.5 Consensus size: 64
26960452 CAAACTTAGT
* * *
26960462 TTTATACTATAAATTATGTTATATAAATTAAATATATTACAACCATAACCTAATTGGAACAAAC
1 TTTATAATATAAATTATGTTATATAAATTAAACACATTACAACCATAACCTAATTGGAACAAAC
* * *
26960526 TTTATAATATAAATTTTGTTATATAAATTAAACACATTACAACCATAATCTAATTGGAA-AAAA
1 TTTATAATATAAATTATGTTATATAAATTAAACACATTACAACCATAACCTAATTGGAACAAAC
* * *
26960589 TATTGTAATATAACTT-TTTTATATAAATTA
1 T-TTATAATATAAATTATGTTATATAAATTA
26960619 CATAAGCTCA
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
63 17 0.20
64 66 0.80
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.39
Consensus pattern (64 bp):
TTTATAATATAAATTATGTTATATAAATTAAACACATTACAACCATAACCTAATTGGAACAAAC
Found at i:26961099 original size:46 final size:46
Alignment explanation
Indices: 26961032--26961124 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
26961022 GTTTCAGAGA
26961032 TAAACTCCATAAGACCTAGGTGGTATACCGGGTCAATGACCGATGG
1 TAAACTCCATAAGACCTAGGTGGTATACCGGGTCAATGACCGATGG
*
26961078 TAAACTCCATAGGACCTAGGTGGTATACCGGGTCAATGACCGATGG
1 TAAACTCCATAAGACCTAGGTGGTATACCGGGTCAATGACCGATGG
26961124 T
1 T
26961125 CTCTGTAACT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (46 bp):
TAAACTCCATAAGACCTAGGTGGTATACCGGGTCAATGACCGATGG
Found at i:26962060 original size:22 final size:22
Alignment explanation
Indices: 26962032--26962077 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
26962022 CTTTTTCCCG
26962032 GTTGTAGTTGGTCATCCGGGCT
1 GTTGTAGTTGGTCATCCGGGCT
*
26962054 GTTGTAGTTGGTCATTCGGGCT
1 GTTGTAGTTGGTCATCCGGGCT
26962076 GT
1 GT
26962078 AATAAAGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.09, C:0.15, G:0.37, T:0.39
Consensus pattern (22 bp):
GTTGTAGTTGGTCATCCGGGCT
Found at i:26964142 original size:2 final size:2
Alignment explanation
Indices: 26964125--26964656 Score: 263
Period size: 2 Copynumber: 278.5 Consensus size: 2
26964115 GCGAGAAGGG
* * * *
26964125 GA GA GA AA GA GC GA GA GA GA GA GA GA GA GA GA GA GA GG GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
26964167 GA -A TGA GA GG GA GA GC GA GA -A AA G- GA GA GCA -A GA GG GA GA
1 GA GA -GA GA GA GA GA GA GA GA GA GA GA GA GA G-A GA GA GA GA GA
* * * * *
26964207 GA GC GA GA G- GA GA GA GA GG GG GA GA GA GA GA GA GA GG GA AA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * *
26964248 GA GG GT GA GA GA GA G- GA G- GA G- GA AA GG GA GA GG GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
26964287 AA GA G- GA G- GA GA GT GA GG GA AA GG GA GA G- GA -A GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
26964325 GA GG GA GA GG GA GA GG GG GA GA GA GA GA GA GA AA GA GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
26964367 GA GG GA GC GA GA GA -A G- GG GA GA G- GA GA GA GA GA GA GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * *
26964406 GA GA -A G- GA GA GG GA GG GA GA GG GA GA G- GG GA GA GA GA AA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * *
26964445 GA GA AA GA GA GG GA GA GG GA GC GA GA GA -A G- GG GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * *
26964485 GA GA GA GA GA GA GA GA GA GA GA G- GG GA GA GA GA GG GA G- GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * *
26964525 GA GA GA GA GG GA GA GC GA GA GG GG GA GG GG GA G- GA -A GA GC
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * *
26964565 GA GA GA GG GA GA GA GC TA GA GA GG GA GA GA GA GG GA GA -A G-
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
26964605 GA GA GG GA GA GG GA GA GG GA G- GA GA GG GA GG GA GA GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
26964646 GG GA GA GA GA G
1 GA GA GA GA GA G
26964657 TGTGTGAAAA
Statistics
Matches: 386, Mismatches: 115, Indels: 58
0.69 0.21 0.10
Matches are distributed among these distances:
1 27 0.07
2 357 0.92
3 2 0.01
ACGTcount: A:0.40, C:0.02, G:0.58, T:0.01
Consensus pattern (2 bp):
GA
Found at i:26974963 original size:17 final size:16
Alignment explanation
Indices: 26974913--26974963 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
26974903 ACCCACAGAA
*
26974913 TATTTTTTTTATTTTT
1 TATTTTTTTTACTTTT
26974929 TATTTTTTTT-CGTATTT
1 TATTTTTTTTAC-T-TTT
26974946 TATTTTTTTGTACTTTT
1 TATTTTTTT-TACTTTT
26974963 T
1 T
26974964 CAATCATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 11 0.37
17 16 0.53
18 2 0.07
19 1 0.03
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.80
Consensus pattern (16 bp):
TATTTTTTTTACTTTT
Found at i:26975357 original size:13 final size:14
Alignment explanation
Indices: 26975317--26975357 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
26975307 ATCCAAGTCC
* *
26975317 AATAAAACAATTAA
1 AATAAAATAACTAA
26975331 AAT-AAATAACTAA
1 AATAAAATAACTAA
26975344 AATAAAATAA-TAA
1 AATAAAATAACTAA
26975357 A
1 A
26975358 TCAAAGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 15 0.62
14 9 0.38
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (14 bp):
AATAAAATAACTAA
Found at i:26978973 original size:11 final size:11
Alignment explanation
Indices: 26978957--26979017 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
26978947 ATAATCAAAT
26978957 GAAAGAAAAAA
1 GAAAGAAAAAA
* *
26978968 GAAAGAGAATA
1 GAAAGAAAAAA
* **
26978979 GAAACAAAACT
1 GAAAGAAAAAA
*
26978990 GAAGGAAAAAA
1 GAAAGAAAAAA
*
26979001 AAAAGAAAGAAA
1 GAAAGAAA-AAA
26979013 GAAAG
1 GAAAG
26979018 GAAGGAGAAA
Statistics
Matches: 36, Mismatches: 13, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
11 29 0.81
12 7 0.19
ACGTcount: A:0.72, C:0.03, G:0.21, T:0.03
Consensus pattern (11 bp):
GAAAGAAAAAA
Found at i:26983576 original size:62 final size:59
Alignment explanation
Indices: 26983468--26983656 Score: 167
Period size: 62 Copynumber: 3.2 Consensus size: 59
26983458 ATCACTTTAA
* *
26983468 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCT
* * * *
26983527 TATTAAATTAATAGAATATTTATCTACAAGATGAATATTAAATTTAATTTAATATTAAGATAAT
1 TATTAAATTAATAGAATACTTA--T-CAAGATAAATATTAAATTAAATTTAATATTAA-AT-CT
* * * * *
26983591 TACTTTAA-TATTA-AAT--TAAT-AAAAT-AATATTAAATTAAATTTAAAATTAAATC-
1 TA-TTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCT
*
26983644 TATTAAAATAATA
1 TATTAAATTAATA
26983657 TTATATTTGG
Statistics
Matches: 108, Mismatches: 15, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
52 4 0.04
53 6 0.06
55 2 0.02
56 23 0.21
57 4 0.04
59 21 0.19
61 3 0.03
62 29 0.27
63 5 0.05
64 7 0.06
65 4 0.04
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (59 bp):
TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCT
Found at i:26983656 original size:56 final size:62
Alignment explanation
Indices: 26983468--26983664 Score: 186
Period size: 56 Copynumber: 3.4 Consensus size: 62
26983458 ATCACTTTAA
* * *
26983468 TATTAAATTAATA-TAATA-CT-TAT-CAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATATTAATATTTATATACAAGATGAATATTAAATTAAATTTAATATTAAATC
* * *
26983526 TTATTAAATTAATA-GAATATTTATCTACAAGATGAATATTAAATTTAATTTAATATTAAGAT-
1 -TATTAAATTAATATTAATATTTATATACAAGATGAATATTAAATTAAATTTAATATTAA-ATC
* ** *
26983588 AATTACTTTAATATTAA-A-TTA-ATA-AA-AT-AATATTAAATTAAATTTAAAATTAAATC
1 TATTAAATTAATATTAATATTTATATACAAGATGAATATTAAATTAAATTTAATATTAAATC
*
26983644 TATTAAAATAATATT-ATATTT
1 TATTAAATTAATATTAATATTT
26983665 GGAATAATTT
Statistics
Matches: 113, Mismatches: 17, Indels: 18
0.76 0.11 0.12
Matches are distributed among these distances:
55 3 0.03
56 35 0.31
57 4 0.04
58 2 0.02
59 19 0.17
60 4 0.04
61 13 0.12
62 31 0.27
63 2 0.02
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (62 bp):
TATTAAATTAATATTAATATTTATATACAAGATGAATATTAAATTAAATTTAATATTAAATC
Found at i:27014654 original size:6 final size:6
Alignment explanation
Indices: 27014643--27014689 Score: 85
Period size: 6 Copynumber: 7.8 Consensus size: 6
27014633 AACGCATATA
*
27014643 AGAAGG AGAAGG AGAAGG AGAAGA AGAAGG AGAAGG AGAAGG AGAAG
1 AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAG
27014690 CCATTTGTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (6 bp):
AGAAGG
Found at i:27014671 original size:24 final size:24
Alignment explanation
Indices: 27014642--27014689 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
27014632 AAACGCATAT
27014642 AAGAAGGAGAAGGAGAAGGAGAAG
1 AAGAAGGAGAAGGAGAAGGAGAAG
27014666 AAGAAGGAGAAGGAGAAGGAGAAG
1 AAGAAGGAGAAGGAGAAGGAGAAG
27014690 CCATTTGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (24 bp):
AAGAAGGAGAAGGAGAAGGAGAAG
Found at i:27015666 original size:14 final size:14
Alignment explanation
Indices: 27015647--27015675 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
27015637 AAATGAATTA
27015647 TGTAATATATTATT
1 TGTAATATATTATT
27015661 TGTAATATATTATT
1 TGTAATATATTATT
27015675 T
1 T
27015676 ATAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TGTAATATATTATT
Found at i:27016731 original size:30 final size:33
Alignment explanation
Indices: 27016695--27016756 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 33
27016685 ATCTTAGAAA
* *
27016695 ATATA-TTATAA-AAAATAATTTGTA-TATTTT
1 ATATATTTATAACAAAAAAATTTATATTATTTT
27016725 ATATATTTATAACAAAAAAATTTATATTATTT
1 ATATATTTATAACAAAAAAATTTATATTATTT
27016757 AAATCCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 5 0.19
31 6 0.22
32 11 0.41
33 5 0.19
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (33 bp):
ATATATTTATAACAAAAAAATTTATATTATTTT
Found at i:27017843 original size:30 final size:29
Alignment explanation
Indices: 27017783--27017843 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
27017773 TTTTTCCAAG
*
27017783 TTATTTTTTTTATATTTAACATTTTTATT
1 TTATTTTTTTTATATTTAACATTTTAATT
27017812 TTATTTTATTTTAT-TTTCAAC-TTATTAATT
1 TTATTTT-TTTTATATTT-AACATT-TTAATT
27017842 TT
1 TT
27017844 TGTTTCATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (29 bp):
TTATTTTTTTTATATTTAACATTTTAATT
Found at i:27017849 original size:20 final size:19
Alignment explanation
Indices: 27017826--27017864 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
27017816 TTTATTTTAT
*
27017826 TTTCAACTTATTAATTTTTG
1 TTTC-ACTTACTAATTTTTG
*
27017846 TTTCATTTACTAATTTTTG
1 TTTCACTTACTAATTTTTG
27017865 ACTCACCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTCACTTACTAATTTTTG
Found at i:27018927 original size:11 final size:12
Alignment explanation
Indices: 27018899--27018927 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
27018889 AGGTTGTTAG
27018899 AATAACCAGACA
1 AATAACCAGACA
27018911 AATAACCAGAC-
1 AATAACCAGACA
27018922 AATAAC
1 AATAAC
27018928 ACATGGCATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.59, C:0.24, G:0.07, T:0.10
Consensus pattern (12 bp):
AATAACCAGACA
Found at i:27022294 original size:30 final size:30
Alignment explanation
Indices: 27022260--27022320 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
27022250 TCCTTAACTC
27022260 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
27022290 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
27022320 A
1 A
27022321 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:27025559 original size:30 final size:30
Alignment explanation
Indices: 27025523--27025582 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
27025513 TTCCCGAGCC
*
27025523 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
27025553 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
27025583 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:27027565 original size:42 final size:43
Alignment explanation
Indices: 27027517--27027622 Score: 112
Period size: 44 Copynumber: 2.5 Consensus size: 43
27027507 TGCCACTCTT
27027517 CCAGACAGGGTCTTACAC-AAAATCA-AA-TACGATGCCAACGTC
1 CCAGACAGGGTCTTACACGAAAA-CATAAGT-CGATGCCAACGTC
* * *
27027559 CCAGACATGGTCTTATACGTAAAACATAAGTCGATGCCAATGTC
1 CCAGACAGGGTCTTACACG-AAAACATAAGTCGATGCCAACGTC
*
27027603 CTAGAC-GTGGTCTTACACGA
1 CCAGACAG-GGTCTTACACGA
27027623 TGGCACATAT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
42 16 0.30
43 3 0.06
44 33 0.62
45 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (43 bp):
CCAGACAGGGTCTTACACGAAAACATAAGTCGATGCCAACGTC
Found at i:27034481 original size:47 final size:47
Alignment explanation
Indices: 27034394--27034608 Score: 349
Period size: 47 Copynumber: 4.6 Consensus size: 47
27034384 CCCTTCGGGA
* * * * * *
27034394 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
27034441 CCTGTTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27034488 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27034535 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27034582 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
27034609 ACCAACCCTT
Statistics
Matches: 156, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 156 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27034904 original size:39 final size:40
Alignment explanation
Indices: 27034833--27034974 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
27034823 GCTACTTGTT
* *
27034833 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
27034873 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
27034912 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
27034953 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
27034975 AGACATCATT
Statistics
Matches: 87, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
38 3 0.03
39 31 0.36
40 41 0.47
41 12 0.14
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:27044401 original size:28 final size:29
Alignment explanation
Indices: 27044369--27044467 Score: 107
Period size: 28 Copynumber: 3.5 Consensus size: 29
27044359 ATAATAAGCC
*
27044369 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
*
27044397 CGCACACTTAGTGC-TATATAATC-AACCT
1 CGCACACTTAGTGCTTACATAATCGAA-CT
* * *
27044425 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
27044454 CGCACACTTAGTGC
1 CGCACACTTAGTGC
27044468 CAATCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
27 4 0.07
28 35 0.57
29 17 0.28
30 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:27059301 original size:24 final size:24
Alignment explanation
Indices: 27059269--27059316 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
27059259 CAAAAACAAA
27059269 ACAATTTTTTTAATGGTGTAACTT
1 ACAATTTTTTTAATGGTGTAACTT
27059293 ACAATTTTTTTAATGGTGTAACTT
1 ACAATTTTTTTAATGGTGTAACTT
27059317 TATTGATAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.50
Consensus pattern (24 bp):
ACAATTTTTTTAATGGTGTAACTT
Found at i:27061025 original size:12 final size:12
Alignment explanation
Indices: 27061008--27061040 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
27060998 CGGCCCGCCC
27061008 ATATTAATTTTT
1 ATATTAATTTTT
27061020 ATATT-ATTTTT
1 ATATTAATTTTT
27061031 ATA-TAATTTT
1 ATATTAATTTT
27061041 AAAAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:27062230 original size:22 final size:22
Alignment explanation
Indices: 27062205--27062247 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
27062195 ATAATTCTTG
27062205 AGTAAACTTTAAAAAAAATTTA
1 AGTAAACTTTAAAAAAAATTTA
27062227 AGTAAACTTTAAAAAAAATTT
1 AGTAAACTTTAAAAAAAATTT
27062248 TAACTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (22 bp):
AGTAAACTTTAAAAAAAATTTA
Found at i:27062701 original size:16 final size:17
Alignment explanation
Indices: 27062646--27062702 Score: 53
Period size: 16 Copynumber: 3.2 Consensus size: 17
27062636 TAAGAGAAAA
27062646 AGAAGAAGAAGAATAAGAGG
1 AGAAG-AGAAGAA-AA-AGG
*
27062666 AGGAGGAGAAGAAAAAGG
1 A-GAAGAGAAGAAAAAGG
*
27062684 AGAAGAGAA-AAAATGG
1 AGAAGAGAAGAAAAAGG
27062700 AGA
1 AGA
27062703 TGCCTGGAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 9 0.27
17 7 0.21
18 4 0.12
19 2 0.06
20 8 0.24
21 3 0.09
ACGTcount: A:0.60, C:0.00, G:0.37, T:0.04
Consensus pattern (17 bp):
AGAAGAGAAGAAAAAGG
Found at i:27064629 original size:77 final size:77
Alignment explanation
Indices: 27064535--27064703 Score: 259
Period size: 77 Copynumber: 2.2 Consensus size: 77
27064525 ACACACTTAA
*
27064535 AAAAAATCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA-TCA
1 AAAAAAT-ACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCAGCCCCACCAACAACT-A
* *
27064599 TACACAAATAGATT
64 TACACAAACAAATT
* *
27064613 AGAAAATACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCAGCCCTACCAACAACTATA
1 AAAAAATACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCAGCCCCACCAACAACTATA
27064678 CACAAACAAATT
66 CACAAACAAATT
*
27064690 AAAAAACACTGCAT
1 AAAAAATACTGCAT
27064704 ATGTAACACC
Statistics
Matches: 83, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
77 76 0.92
78 7 0.08
ACGTcount: A:0.47, C:0.24, G:0.09, T:0.20
Consensus pattern (77 bp):
AAAAAATACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCAGCCCCACCAACAACTATA
CACAAACAAATT
Found at i:27065658 original size:27 final size:26
Alignment explanation
Indices: 27065610--27065687 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 26
27065600 GCGAGGCTGC
* *
27065610 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
27065636 ACAGATATTGTGGCAGAGCCACCAGAT
1 -CAGATATTGTGGCAGAGCCACCAGAT
*
27065663 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
27065688 GACGCTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
26 5 0.11
27 40 0.87
28 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:27069687 original size:48 final size:48
Alignment explanation
Indices: 27069629--27069761 Score: 257
Period size: 48 Copynumber: 2.8 Consensus size: 48
27069619 TAGGATACAA
27069629 ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGTCATTCAT
1 ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGTCATTCAT
27069677 ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGTCATTCAT
1 ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGTCATTCAT
*
27069725 ACAATGGTAGATACAAACAATAAACATCAGTTTGATA
1 ACAATGGCAGATACAAACAATAAACATCAGTTTGATA
27069762 CAATTAGTTT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.26
Consensus pattern (48 bp):
ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGTCATTCAT
Found at i:27069801 original size:24 final size:24
Alignment explanation
Indices: 27069769--27069815 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
27069759 ATACAATTAG
*
27069769 TTTGATACAAATAATAAACATCAA
1 TTTGATACAAACAATAAACATCAA
27069793 TTTGATACAAACAATAAACATCA
1 TTTGATACAAACAATAAACATCA
27069816 TGCACATGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.53, C:0.15, G:0.04, T:0.28
Consensus pattern (24 bp):
TTTGATACAAACAATAAACATCAA
Found at i:27069930 original size:17 final size:17
Alignment explanation
Indices: 27069910--27069963 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
27069900 ACCAAAATTG
27069910 AAATAACCCTAAATCCA
1 AAATAACCCTAAATCCA
** *
27069927 AAATCAA-AAT-AAGCCA
1 AAAT-AACCCTAAATCCA
27069943 AAATAACCCTAAATCCA
1 AAATAACCCTAAATCCA
27069960 AAAT
1 AAAT
27069964 CAAAATCAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
15 2 0.07
16 10 0.36
17 14 0.50
18 2 0.07
ACGTcount: A:0.57, C:0.24, G:0.02, T:0.17
Consensus pattern (17 bp):
AAATAACCCTAAATCCA
Found at i:27069946 original size:23 final size:23
Alignment explanation
Indices: 27069901--27069991 Score: 57
Period size: 23 Copynumber: 4.0 Consensus size: 23
27069891 ACAAATGAAA
** *
27069901 CCAAAATTGAAATAACCCTAAAT
1 CCAAAATCAAAATAACCCAAAAT
*
27069924 CCAAAATCAAAATAAGCCAAAAT
1 CCAAAATCAAAATAACCCAAAAT
*
27069947 AACCCTAAATCCAAAAT----CAAAAT
1 ---CCAAAAT-CAAAATAACCCAAAAT
*
27069970 -CAAAATCGAAATAACCCAAAAT
1 CCAAAATCAAAATAACCCAAAAT
27069992 AACCTTAAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 17
0.69 0.09 0.22
Matches are distributed among these distances:
18 5 0.09
19 5 0.09
22 6 0.11
23 25 0.47
26 6 0.11
27 6 0.11
ACGTcount: A:0.57, C:0.23, G:0.03, T:0.16
Consensus pattern (23 bp):
CCAAAATCAAAATAACCCAAAAT
Found at i:27071326 original size:10 final size:10
Alignment explanation
Indices: 27071305--27071356 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
27071295 ATATTTTTAA
*
27071305 TTATAATTTT
1 TTATAATATT
*
27071315 TTATGATATT
1 TTATAATATT
27071325 TTATAATATT
1 TTATAATATT
*
27071335 TGA-AATATT
1 TTATAATATT
27071344 TT-TATATATT
1 TTATA-ATATT
27071354 TTA
1 TTA
27071357 ACTAGATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
9 8 0.24
10 26 0.76
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (10 bp):
TTATAATATT
Found at i:27080551 original size:26 final size:26
Alignment explanation
Indices: 27080522--27080630 Score: 191
Period size: 26 Copynumber: 4.2 Consensus size: 26
27080512 TGGTACAAAT
27080522 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
27080548 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27080574 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27080600 TGATAATGGGTTATGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27080626 TGATA
1 TGATA
27080631 GGCATTTCAT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27087651 original size:24 final size:25
Alignment explanation
Indices: 27087622--27087723 Score: 140
Period size: 24 Copynumber: 4.2 Consensus size: 25
27087612 TGGTACAAAT
27087622 TGATAATGGGTAGG-AAATGTTCCA
1 TGATAATGGGTAGGTAAATGTTCCA
*
27087646 TGATAATGGATTAGGTAAA--TTCCA
1 TGATAATGG-GTAGGTAAATGTTCCA
27087670 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGG-TAGGTAAATGTTCCA
*
27087696 T-ATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGGTAGGTAAATGTTCCA
27087720 TGAT
1 TGAT
27087724 GGATTCATGT
Statistics
Matches: 69, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
24 47 0.68
25 13 0.19
26 9 0.13
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.34
Consensus pattern (25 bp):
TGATAATGGGTAGGTAAATGTTCCA
Found at i:27087679 original size:48 final size:49
Alignment explanation
Indices: 27087622--27087723 Score: 156
Period size: 50 Copynumber: 2.1 Consensus size: 49
27087612 TGGTACAAAT
27087622 TGATAATGGG-TAGG-AAATGTTCCATGATAATGGATTAGGTAAA-TTCCA
1 TGATAATGGGTTAGGTAAATGTTCCAT-ATAATGG-TTAGGTAAAGTTCCA
27087670 TGATAATGGGTTAGGTAAATGTTCCATATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATATAATGGTTAGGTAAA-GTTCCA
27087720 TGAT
1 TGAT
27087724 GGATTCATGT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
48 19 0.38
49 11 0.22
50 20 0.40
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.34
Consensus pattern (49 bp):
TGATAATGGGTTAGGTAAATGTTCCATATAATGGTTAGGTAAAGTTCCA
Found at i:27089255 original size:22 final size:22
Alignment explanation
Indices: 27089228--27089269 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
27089218 CATGTTTGAC
27089228 TGTTGTTATTTA-CTGCATGCCA
1 TGTTGTTATTTATCTG-ATGCCA
27089250 TGTTGTTATTTATCTGATGC
1 TGTTGTTATTTATCTGATGC
27089270 ATAGGATTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.17, C:0.14, G:0.19, T:0.50
Consensus pattern (22 bp):
TGTTGTTATTTATCTGATGCCA
Found at i:27102232 original size:18 final size:19
Alignment explanation
Indices: 27102200--27102244 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
27102190 AAAATTTTAA
*
27102200 TAAAAAATATTTAAAACTT
1 TAAAAAATATGTAAAACTT
*
27102219 TAAAAAAT-TGTAAAATTT
1 TAAAAAATATGTAAAACTT
*
27102237 TATAAAAT
1 TAAAAAAT
27102245 CATAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
TAAAAAATATGTAAAACTT
Found at i:27102556 original size:9 final size:9
Alignment explanation
Indices: 27102544--27102639 Score: 74
Period size: 9 Copynumber: 10.4 Consensus size: 9
27102534 GTTCTATATA
27102544 TTTTATAAT
1 TTTTATAAT
27102553 TTTTATAAAAT
1 TTTTAT--AAT
27102564 TTTTATAAT
1 TTTTATAAT
27102573 TTTTA-AATT
1 TTTTATAA-T
27102582 TTTTATTAAT
1 TTTTA-TAAT
**
27102592 ATTCAATAA-
1 -TTTTATAAT
* *
27102601 TTTTGTAAC
1 TTTTATAAT
27102610 TTTTATTAAT
1 TTTTA-TAAT
27102620 TTTTAT--T
1 TTTTATAAT
27102627 TTTTATAAT
1 TTTTATAAT
27102636 TTTT
1 TTTT
27102640 TGCCACATGT
Statistics
Matches: 70, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
7 7 0.10
8 7 0.10
9 30 0.43
10 12 0.17
11 14 0.20
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:27102962 original size:91 final size:91
Alignment explanation
Indices: 27102832--27103003 Score: 220
Period size: 91 Copynumber: 1.9 Consensus size: 91
27102822 TTATGGAATA
* * * *
27102832 TTTTGATGCATTTTGAAAGTTTAAGTACTCAATTGAGTGTAAAAAA-AAAAAGCCTTAATTATTT
1 TTTTGATGCATTTTAAAAGTTTAAATACTCAATTGAGTGTAAAAAAGAAAAAGACTTAATTACTT
27102896 TTTTAAAGAAAAATATGAGAATAATTT
66 TTTTAAA-AAAAATATGAGAATAATTT
* * * * * *
27102923 TTTTTATGTATTTTAAAAGTTTAAATATTTAATTTAGTGTAAAAAAGTAAAAAGACTTAATTGCT
1 TTTTGATGCATTTTAAAAGTTTAAATACTCAATTGAGTGTAAAAAAG-AAAAAGACTTAATTACT
*
27102988 TTTTTAAAAAACATAT
65 TTTTTAAAAAAAATAT
27103004 CCGTTACAAT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
91 39 0.57
92 7 0.10
93 22 0.32
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (91 bp):
TTTTGATGCATTTTAAAAGTTTAAATACTCAATTGAGTGTAAAAAAGAAAAAGACTTAATTACTT
TTTTAAAAAAAATATGAGAATAATTT
Found at i:27105797 original size:26 final size:27
Alignment explanation
Indices: 27105736--27105798 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
27105726 TATCTGAAGC
* *
27105736 TCCTGATTAATGGCTCTTTGTGAGCTT
1 TCCTGATTAAAGGCTCTTCGTGAGCTT
*
27105763 TCC-GTTTAAAGGCTCTTCGTGAGC-T
1 TCCTGATTAAAGGCTCTTCGTGAGCTT
27105788 TCCTGATTAAA
1 TCCTGATTAAA
27105799 ATTTCTATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 4 0.13
26 24 0.77
27 3 0.10
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (27 bp):
TCCTGATTAAAGGCTCTTCGTGAGCTT
Found at i:27110373 original size:93 final size:93
Alignment explanation
Indices: 27110263--27110434 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
27110253 CGCCCATAAG
* * *
27110263 TGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
27110328 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
27110356 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 TGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
27110421 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
27110435 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:27110431 original size:46 final size:46
Alignment explanation
Indices: 27110256--27110431 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
27110246 TGTAACCCGC
* * *
27110256 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
* *
27110302 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
27110352 --TTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
27110395 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
27110432 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.57
47 30 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:27123567 original size:26 final size:26
Alignment explanation
Indices: 27123538--27123593 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
27123528 CACTCTCTCA
27123538 AGCCATATAA-CAAGAAACTCACAAAG
1 AGCCAT-TAATCAAGAAACTCACAAAG
* * *
27123564 AGCCATTAATTAGGAAGCTCACAAAG
1 AGCCATTAATCAAGAAACTCACAAAG
27123590 AGCC
1 AGCC
27123594 TATCGGGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.46, C:0.23, G:0.16, T:0.14
Consensus pattern (26 bp):
AGCCATTAATCAAGAAACTCACAAAG
Found at i:27123696 original size:26 final size:26
Alignment explanation
Indices: 27123622--27123729 Score: 87
Period size: 26 Copynumber: 4.2 Consensus size: 26
27123612 GGCTATATAA
*
27123622 CAGGAAGCTCACACAA-AGCC-ATAAT
1 CAGGAAGCTCACA-AAGAGCCTTTAAT
* * * ***
27123647 CAAGAAGTTCACATAGAAATTTTAAT
1 CAGGAAGCTCACAAAGAGCCTTTAAT
* *
27123673 CAGGAAGCTCACGAAGAGCCTTTAAA
1 CAGGAAGCTCACAAAGAGCCTTTAAT
*
27123699 C-GGAAAGCTCACAAAGAGCCATTAAT
1 CAGG-AAGCTCACAAAGAGCCTTTAAT
27123725 CAGGA
1 CAGGA
27123730 GCTTCAGATA
Statistics
Matches: 61, Mismatches: 18, Indels: 7
0.71 0.21 0.08
Matches are distributed among these distances:
24 1 0.02
25 14 0.23
26 44 0.72
27 2 0.03
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.18
Consensus pattern (26 bp):
CAGGAAGCTCACAAAGAGCCTTTAAT
Found at i:27126886 original size:9 final size:10
Alignment explanation
Indices: 27126818--27126914 Score: 50
Period size: 9 Copynumber: 10.4 Consensus size: 10
27126808 GACATGTGGC
27126818 AAAAAATTAT
1 AAAAAATTAT
27126828 -AAAAA--AT
1 AAAAAATTAT
27126835 -AAAAATTA-
1 AAAAAATTAT
* *
27126843 ATAAAAGT-T
1 AAAAAATTAT
*
27126852 ACAAAATTAT
1 AAAAAATTAT
** *
27126862 TGAATATTAAT
1 AAAAAATT-AT
27126873 AAAAAATT-T
1 AAAAAATTAT
27126882 -AAAAATTAT
1 AAAAAATTAT
*
27126891 -AAAAATTTT
1 AAAAAATTAT
27126900 ATAAAAATTAT
1 A-AAAAATTAT
27126911 AAAA
1 AAAA
27126915 TATATAGAAC
Statistics
Matches: 66, Mismatches: 12, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
7 7 0.11
8 7 0.11
9 27 0.41
10 9 0.14
11 16 0.24
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:27127255 original size:18 final size:18
Alignment explanation
Indices: 27127216--27127259 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
27127206 TTTTTTTATG
*
27127216 ATTTTATAAAATTTTACA
1 ATTTTTTAAAATTTTACA
*
27127234 ATTTTTTAAAGTTTTA-A
1 ATTTTTTAAAATTTTACA
27127251 TATTTTTTA
1 -ATTTTTTA
27127260 TTAAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 22 0.96
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (18 bp):
ATTTTTTAAAATTTTACA
Found at i:27127679 original size:21 final size:20
Alignment explanation
Indices: 27127637--27127679 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
27127627 AGCGTACCAA
*
27127637 AAATTTAGATTTATTAAATT
1 AAATTTAGATTAATTAAATT
27127657 AAATTTATGATGTAATT-AATT
1 AAATTTA-GAT-TAATTAAATT
27127678 AA
1 AA
27127680 TCAAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (20 bp):
AAATTTAGATTAATTAAATT
Found at i:27128422 original size:15 final size:15
Alignment explanation
Indices: 27128402--27128446 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
27128392 ATAACTTAAA
27128402 TTTAATATTTAATTT
1 TTTAATATTTAATTT
* **
27128417 TTTAATAATTAAACT
1 TTTAATATTTAATTT
*
27128432 TTTAATTTTTAATTT
1 TTTAATATTTAATTT
27128447 ATCAAACATC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTAATATTTAATTT
Found at i:27141917 original size:26 final size:26
Alignment explanation
Indices: 27141877--27141985 Score: 191
Period size: 26 Copynumber: 4.2 Consensus size: 26
27141867 ATGAAATGCC
27141877 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
*
27141903 TATGATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
27141929 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
27141955 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
27141981 TATCA
1 TATCA
27141986 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:27149055 original size:26 final size:26
Alignment explanation
Indices: 27149026--27149134 Score: 191
Period size: 26 Copynumber: 4.2 Consensus size: 26
27149016 ATGAAATGCC
*
27149026 TATCATGGAACATTTACATAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
27149052 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
27149078 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
27149104 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
27149130 TATCA
1 TATCA
27149135 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:27171185 original size:17 final size:18
Alignment explanation
Indices: 27171163--27171197 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
27171153 CAATTTGGGC
27171163 CGTGTGGG-CCATACGAG
1 CGTGTGGGCCCATACGAG
27171180 CGTGTGGGCCCATACGAG
1 CGTGTGGGCCCATACGAG
27171198 TAGATCACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.17, C:0.26, G:0.40, T:0.17
Consensus pattern (18 bp):
CGTGTGGGCCCATACGAG
Found at i:27183221 original size:26 final size:26
Alignment explanation
Indices: 27183192--27183243 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27183182 AAATGAATTA
27183192 AAAGACAAATTTTAAACCCCAAATGT
1 AAAGACAAATTTTAAACCCCAAATGT
*
27183218 AAAGATAAATTTTAAACCCCAAATGT
1 AAAGACAAATTTTAAACCCCAAATGT
27183244 GTCACTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.50, C:0.17, G:0.08, T:0.25
Consensus pattern (26 bp):
AAAGACAAATTTTAAACCCCAAATGT
Found at i:27184157 original size:31 final size:31
Alignment explanation
Indices: 27184120--27184328 Score: 319
Period size: 31 Copynumber: 6.7 Consensus size: 31
27184110 TGTGTACAAT
27184120 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
27184151 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
27184182 GTGAAAAGTAGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
27184213 ATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
27184244 GTGAAAAGTAGTAGCTTCGACTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
27184275 GTGAAAAGTGGTAGCTCCAGCTACTTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
27184306 ATGAATAGTGATAGCTTCGGCTA
1 GTGAAAAGTGGTAGCTTCGGCTA
27184329 TCGAATGTGA
Statistics
Matches: 160, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 160 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:27184347 original size:29 final size:29
Alignment explanation
Indices: 27184315--27184371 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
27184305 AATGAATAGT
27184315 GATAGCTTCGGCTATCGAATGTGAAAAGG
1 GATAGCTTCGGCTATCGAATGTGAAAAGG
*
27184344 GATAGCTTTGGCTATCGAATGTGAAAAG
1 GATAGCTTCGGCTATCGAATGTGAAAAG
27184372 CTTAGGTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (29 bp):
GATAGCTTCGGCTATCGAATGTGAAAAGG
Found at i:27184438 original size:32 final size:32
Alignment explanation
Indices: 27184365--27184519 Score: 168
Period size: 32 Copynumber: 4.8 Consensus size: 32
27184355 CTATCGAATG
* *
27184365 TGAAAAGCTTAGGTATACTTTGTGTATATCACA
1 TGAAAAGGTTAGGTATACTTTGTGTATA-CACT
* * *
27184398 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACACT
* * *
27184430 TGAAAAGGTTATGTACACTTTGTGTCTACACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACACT
**
27184462 TGAAAAGGAAAGGTATACTTTGTGTATAC-CAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACAC-T
**
27184494 ATGAAAAGGAAAGGTATACTTTGTGT
1 -TGAAAAGGTTAGGTATACTTTGTGT
27184520 GTACCACTCA
Statistics
Matches: 109, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
31 1 0.01
32 59 0.54
33 49 0.45
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.35
Consensus pattern (32 bp):
TGAAAAGGTTAGGTATACTTTGTGTATACACT
Found at i:27184564 original size:97 final size:95
Alignment explanation
Indices: 27184375--27184572 Score: 209
Period size: 97 Copynumber: 2.0 Consensus size: 95
27184365 TGAAAAGCTT
* ** * * *
27184375 AGGTATACTTTGTGTATATCACATGAAAAGGTTATGTACACTTTGTGTGTACACTTGAAAAGGTT
1 AGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACTAGAAAA-G-A
* *** * *
27184440 ATGTACACTTTGTGTCTACACTTGAAAAGGAA
64 ATGTACACCTCAAGTCTACAATTGAAAAGAAA
* *
27184472 AGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCACTCAGAAAA-A
1 AGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTA-CACT-AGAAAAGA
*
27184536 ATGTACACCTCAAGTGTACAATTGGAAAAGAAA
64 ATGTACACCTCAAGTCTACAATT-GAAAAGAAA
27184569 AGGT
1 AGGT
27184573 CCATCAGAAA
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
96 17 0.20
97 57 0.69
98 4 0.05
99 5 0.06
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (95 bp):
AGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACTAGAAAAGAAT
GTACACCTCAAGTCTACAATTGAAAAGAAA
Found at i:27189348 original size:11 final size:9
Alignment explanation
Indices: 27189298--27189339 Score: 57
Period size: 10 Copynumber: 4.4 Consensus size: 9
27189288 GAATGAGTGT
27189298 AAATTTAAA
1 AAATTTAAA
27189307 AAATTTAAA
1 AAATTTAAA
*
27189316 AACTATTAAA
1 AAAT-TTAAA
27189326 AAATTCTAAA
1 AAATT-TAAA
27189336 AAAT
1 AAAT
27189340 ATGTAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 13 0.45
10 16 0.55
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (9 bp):
AAATTTAAA
Found at i:27189350 original size:20 final size:19
Alignment explanation
Indices: 27189298--27189348 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
27189288 GAATGAGTGT
27189298 AAAT-TTAAAAAATTTAAA
1 AAATATTAAAAAATTTAAA
*
27189316 AACTATTAAAAAATTCTAAA
1 AAATATTAAAAAATT-TAAA
27189336 AAATATGTAAAAA
1 AAATAT-TAAAAA
27189349 TTTTCAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 3 0.11
19 10 0.36
20 9 0.32
21 6 0.21
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (19 bp):
AAATATTAAAAAATTTAAA
Found at i:27189767 original size:13 final size:14
Alignment explanation
Indices: 27189744--27189772 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
27189734 AAGATTTGAG
27189744 TAAAAATATAAGTT
1 TAAAAATATAAGTT
27189758 TAAAAA-ATAAGTT
1 TAAAAATATAAGTT
27189771 TA
1 TA
27189773 GACAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (14 bp):
TAAAAATATAAGTT
Found at i:27191766 original size:35 final size:35
Alignment explanation
Indices: 27191726--27191795 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
27191716 TTGAAAGTTT
* *
27191726 GGTTAGTCCCAGTTTTAGGGACTACATTGAATAAA
1 GGTTAGTCCCAGTTTTAGGAACTAAATTGAATAAA
***
27191761 GGTTAGTCTTGGTTTTAGGAACTAAATTGAATAAA
1 GGTTAGTCCCAGTTTTAGGAACTAAATTGAATAAA
27191796 TTGTAAAAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34
Consensus pattern (35 bp):
GGTTAGTCCCAGTTTTAGGAACTAAATTGAATAAA
Found at i:27194766 original size:46 final size:45
Alignment explanation
Indices: 27194715--27194883 Score: 139
Period size: 46 Copynumber: 3.6 Consensus size: 45
27194705 CGTAGCCGAA
* *
27194715 GCATGTCCTAGACATGTCTTACACTGGCTTATGTCTCGAGGTCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAGG-CGAT
* * *
27194761 GCATGTCCCAAACATGTCTTACACTAGC--ACTCGTCTCAATGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGCTTA-T-GTCTCGAGGC-GAT
* * * *
27194807 GCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAATGT-G-GCCGAT
1 G-CATGTCCCAGACAT-GTCTTACACTAGCT-T-AT-GTCTCGAGGCGAT
*
27194855 GCATGTCCTAGACATGTCTTACACTAGCT
1 GCATGTCCCAGACATGTCTTACACTAGCT
27194884 CACAATAACC
Statistics
Matches: 99, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 49 0.49
47 26 0.26
48 16 0.16
49 1 0.01
51 3 0.03
52 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAGGCGAT
Found at i:27200018 original size:28 final size:28
Alignment explanation
Indices: 27199985--27200066 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
27199975 TTTGAATCAT
* *
27199985 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
*
27200013 TCAATATCTCGCACACTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * *
27200041 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
27200067 ATTTGATTGC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:27202174 original size:58 final size:57
Alignment explanation
Indices: 27202073--27202187 Score: 203
Period size: 58 Copynumber: 2.0 Consensus size: 57
27202063 GTGGACAAAA
*
27202073 ACAAGGCTATTTACAAAGCCTTTTTGCCACCCTTACTTGTACCAACCTAGACAACAT
1 ACAAGGCTATTTACAAAGCCTTTTTGCCACCCTTACTTGTACCAACCTACACAACAT
*
27202130 ACAAGGCTATTTACCAAGCCTTTTTTGCCACCCTTACTTGTACCAACCTACACAACAT
1 ACAAGGCTATTTACAAAGCC-TTTTTGCCACCCTTACTTGTACCAACCTACACAACAT
27202188 CAACTAAAAC
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
57 19 0.35
58 36 0.65
ACGTcount: A:0.30, C:0.31, G:0.10, T:0.29
Consensus pattern (57 bp):
ACAAGGCTATTTACAAAGCCTTTTTGCCACCCTTACTTGTACCAACCTACACAACAT
Found at i:27202963 original size:48 final size:49
Alignment explanation
Indices: 27202889--27203209 Score: 334
Period size: 48 Copynumber: 6.7 Consensus size: 49
27202879 TGGGTAAATT
* *
27202889 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGA-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGATG
* * * * * *
27202937 ACTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTCAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGATG
27202985 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G-TG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGATG
* * * * * *
27203033 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGATG
* * * * * * *
27203081 GTCGATGCCATATCCCAGACTTAGTCTTACACTGGCTCTCACAAC-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGATG
* *
27203129 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-G-TG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGATG
* * *
27203177 GCCGATGCCATGTTCCAAACATGGCCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
27203210 AGCGCACATA
Statistics
Matches: 223, Mismatches: 42, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
47 5 0.02
48 215 0.96
49 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGATG
Found at i:27203149 original size:144 final size:144
Alignment explanation
Indices: 27202889--27203222 Score: 483
Period size: 144 Copynumber: 2.3 Consensus size: 144
27202879 TGGGTAAATT
* * * * * * *
27202889 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGACTGATGCCATGTCCCA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAAGACTGATGCCATATCCCA
* *
27202954 AACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTG
66 AACATAGTCTTACACTAGCTCTCATCACAATGCCGATGCCATGTCCCAGACATGGTCTTACACTG
27203019 GCTCTCATAATGTG
131 GCTCTCATAATGTG
*
27203033 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAATGTC-GATGCCATATCCC
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAA-GACTGATGCCATATCCC
* * * * * *
27203097 AGACTTAGTCTTACACTGGCTCTCA-CAACATTGTCGATGCCATGTCCTAGACATGGTCTTACAC
65 AAACATAGTCTTACACTAGCTCTCATC-ACAATGCCGATGCCATGTCCCAGACATGGTCTTACAC
27203161 TGGCTCTCATAATGTG
129 TGGCTCTCATAATGTG
*
27203177 GCCGATGCCATGTTCCAAACATGGCCTTACACTAGCGCACATATCA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCA
27203223 CCCAAATGTC
Statistics
Matches: 171, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
143 1 0.01
144 168 0.98
145 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (144 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAAGACTGATGCCATATCCCA
AACATAGTCTTACACTAGCTCTCATCACAATGCCGATGCCATGTCCCAGACATGGTCTTACACTG
GCTCTCATAATGTG
Found at i:27218759 original size:465 final size:472
Alignment explanation
Indices: 27208565--27229486 Score: 32468
Period size: 465 Copynumber: 44.0 Consensus size: 472
27208555 ACACTTCTTC
* *
27208565 TTGAAAAATAAATTAAAATGGAGAGAAATTACAATATTAACTAAACGGGTAAATAATA-TCGCGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTC-CGG
27208629 AAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCCTT
64 AAAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTT
* *
27208694 TTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCTAATATTTTCCACTTTCCTTTTCCAGA
128 TTAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC-TTTCCAGA
27208759 CCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACT
191 CCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACT
* * *
27208824 TGTAATCGCCCTAAAAAAAGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTA
256 TGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTA
*
27208889 GGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAATAGTTAGCTTAATTTCATTTAA
321 GGAGTTAATCGGGTTTACTAGTCA----TTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAA
* * * * *
27208954 AAATCAGAAAATAACATTCCAGAAAATAAAAATATTTTTGAGAAATCAATTTTACGGTTTT-AA-
382 AAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAAT
27209017 ATTTTTTGGTTAGAGTAAATATTTTA
447 ATTTTTTGGTTAGAGTAAATATTTTA
* * *
27209043 TTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAAGATTCCGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
27209108 AAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
*
27209173 TAGCCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
* * *
27209238 ACCAAATTCTACTTATCTTTGATAGAAGCTTCTCGATCACAATCCTAATTGTCTAAACCTACTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * * * *
27209303 TAATCGCCCTAAAAAAAGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTTCGGGTGAATGCTAAG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
* **
27209368 AGTTAATCGAGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGCCAGCTTAATTTCATTTAA
323 AGTTAATCGGGTTTACTAGTCA-----TTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAA
*
27209433 AATTCGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAAT
382 AAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAAT
*
27209498 A-TTTTTGGTTCGAGTAAATATTTTA
447 ATTTTTTGGTTAGAGTAAATATTTTA
*
27209523 TTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
*
27209588 AAATAAAAATATTTTT-GAAAAATATCACTCACGAATATAATGAATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
* *
27209652 TAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTACTCTTTCCTTTCCAAACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
*
27209717 ACCAAATTCTTCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * * *
27209782 TAATTGCCCTAAAAATAGGTCTCCCGGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
*
27209847 AGTTAATCGGCTTTACTAGTCATTGTTTTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAA
323 AGTTAATCGGGTTTACTAGTCA-----TTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAA
* * * *
27209912 AATCAGTAAATAACATTCCAGAAAATAAAAATATTTTTTGAGAAATCAATTTTACGGTTTTAAAT
383 AATCGGTAAATAATATTCCGGAAAATAAAAATA-TTTTTGAGAAATCAATTTTATGGTTTTAAAT
* * *
27209977 ATTTTTTGGTAAAAGTAAATGTTTTA
447 ATTTTTTGGTTAGAGTAAATATTTTA
* * * *
27210003 TTAAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAAGATTCCGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
27210068 AAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
*
27210133 TAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCTAATATTTTCCTCTTTCCTTTCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
27210198 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * * * *
27210263 TAATCTCCCTAAAAAAAGCTCTATCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
27210328 AGTTAATCGGGTTTACTAGTCATTATTTTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAA
323 AGTTAATCGGGTTTACTAGTCA-T-TTTTTT-AAAAAAAATAGTTAGCTTAATTTCATTTAAAAA
* * * *
27210393 TCAGTAAATAACATTCCAGAAAATAAAAATATTTTTGAGAAATCAATTTTACGGTTTTAAATATT
385 TCGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATT
27210458 TTTTGGTTAGAGTAAATATTTTA
450 TTTTGGTTAGAGTAAATATTTTA
* *
27210481 TTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAAGATTCC-GA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
27210545 AAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
27210610 TAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
* * *
27210675 ACCAAATTCTACTTATCTTTGATAGAAGCT-CTCGATCACAATCCTAATTGTCTAAACCGACTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * *
27210739 TAATCGCCCTAAAAA-AGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAAG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
* ** *
27210803 AGTTAATCGAGTTTACTAGTCATTGTTTTTTTTAAAAAAAATTAGCCAGCTTAATTTCAATTAAA
323 AGTTAATCGGGTTTACTAGTCA----TTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAA
*
27210868 ATTCGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATA
383 AATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATA
**
27210933 TTTTTTGGTCCGAGTAAATATTTTA
448 TTTTTTGGTTAGAGTAAATATTTTA
*
27210958 TTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
* *
27211023 AAATAAAAATATTTTT-GAAAAATATCACTCACGAATATCATTAATACTAATACCCTCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
27211087 TAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
* * *
27211152 ACCAAATTCTTCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATAGTCCAAACCTATTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * *
27211217 TAATCACCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGGTTCCGAGTGAATGCTAG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATC-GGGTTCCGGGTGAAAGCTAG
**
27211282 GAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTTAAAAAATAGTTAGCTTAATTTCATTTAAA
322 GAGTTAATCGGGTTTACTAGTCA----TTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAA
** * * *
27211347 AATTAGTAAATAACATTCCAGAAAATAAAAATATTTTTTGAGAAATGAATTTTATGGTTTTAAAT
383 AATCGGTAAATAATATTCCGGAAAATAAAAATA-TTTTTGAGAAATCAATTTTATGGTTTTAAAT
27211412 A-TTTTTGGTTAGAGTAAATATTTTA
447 ATTTTTTGGTTAGAGTAAATATTTTA
* * * *
27211437 TTGAAAAATAAATTAAAATTGAAAGAAGTTACAATATTAACTAAACGGGTAAATAAGATTCCGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
27211502 AAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
* *
27211567 TAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCTAATATTTTCCTCTTTCCTTCCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
27211632 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* ** * *
27211697 TAATCGCCCTAAAAAAATTTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGATGAATGCTAGG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
***
27211762 AGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTTAAAAATAGTTAGCTTAATTTCATTTAAAAA
323 AGTTAATCGGGTTTACTAGTCA---TTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAA
* * * *
27211827 TCAGTAAATAACATTCCAGAAAATAAAAATATTTTTTGAGAAATCAATTTTACGGTTTTAAATA-
385 TCGGTAAATAATATTCCGGAAAATAAAAATA-TTTTTGAGAAATCAATTTTATGGTTTTAAATAT
27211891 TTTTTGGTTAGAGTAAATATTTTA
449 TTTTTGGTTAGAGTAAATATTTTA
*
27211915 TTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGAGTAAATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACG-GTAAATAATATTCCGGA
27211980 AAATAAAAATATTTTT-GAAAAATATCACTCACGAATATCATGAATACTAATA-CCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
*
27212043 TAGGCTGGCACACAAATTCTTCCACGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
* * * *
27212108 ACCAAATTCTACTTATCTTTGATAGAAACTTCTCGATCACAATCCTAATTGTCTAAACCTACTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* *
27212173 TAATCGCCCTAAAAA-AGCTCTACCAGTTTTGAGTAA-TTTATCGGGTTCCGGGTGAATGCTAGG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
* * * *
27212236 AGTTAAACAGGTTTACTAGTCATTGTTTTTTTTAAAAAAAAATTAGTTAACTTACTTTCATTTAA
323 AGTTAATCGGGTTTACTAGTCA----TTTTTTT-AAAAAAAA-TAGTTAGCTTAATTTCATTTAA
* *
27212301 AAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTTGAAAAATCAATTTTATGGTTTTAAA
382 AAATCGGTAAATAATATTCCGGAAAATAAAAATA-TTTTTGAGAAATCAATTTTATGGTTTTAAA
27212366 TATTTTTTGGTTAGAGTAAATATTTTA
446 TATTTTTTGGTTAGAGTAAATATTTTA
* * *
27212393 TTGAAAAATAAATTAAAATGGAGAAAAGTTACAATATTTACTTAACAGGTAAATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
27212458 AAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
*
27212523 TAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCTAATATTTTCCTCTTTCC-TTCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
27212587 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* *
27212652 TAATTGCCCTAAAAA-A-GTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
*
27212715 AGTTAATCGGGTTTACTAGTCATTGTTTTTTTAAAAAAATAGTTAGCTTAATTTCATTTAAAAAT
323 AGTTAATCGGGTTTACTAGTCA-T-TTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAAT
* * * * *
27212780 CAGTAAATAACATTCCAGAAAATAAAAATATTTTTTGAGAAATCAATATTACGGTTTTAAATATT
386 CGGTAAATAATATTCCGGAAAATAAAAATA-TTTTTGAGAAATCAATTTTATGGTTTTAAATATT
27212845 TTTTGGTTAGAGTAAATATTTTA
450 TTTTGGTTAGAGTAAATATTTTA
*
27212868 TTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC-GA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
27212932 AAATAAAAATATTTTT-GAAAAATATCACTCACGAATATCATGAATACTAATA-CCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
27212995 TAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
129 TAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
* * * *
27213060 CCAAATTCTACTTATCCTTGATAGAAGCTTCTCGATCACAATCCTAATTGTCTAAACCTACTTGT
194 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
* * *
27213125 AATCGCCCTAAAAAAAGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGA
259 AATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
* *
27213190 GTTAAACAGGTTTACTAGTCATTGTTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAA
324 GTTAATCGGGTTTACTAGTCA------TTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAA
* * *
27213255 AAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTTAAGAAATCAATTTTATAGTTTTAAA
382 AAATCGGTAAATAATATTCCGGAAAATAAAAATA-TTTTTGAGAAATCAATTTTATGGTTTTAAA
27213320 TATTTTTTGGTTAGAGTAAATATTTTA
446 TATTTTTTGGTTAGAGTAAATATTTTA
* *
27213347 TTGAAAAATAAATTAAAATGGAGAAAAGTTACAATATTTACTAAACAGGTAAATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
27213412 AAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
* *
27213477 TAGGTTGGCACACAAATTCTTCCACGGAAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
* ** *
27213542 ACCAAATTTTTTTTATCTTTAATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * * * *
27213607 TAATCACCCTAAAAATAGGTTTACCAGTTTTGAGTAAGTTTATCGAGGTTCCGAGTGAATGCTAC
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCG-GGTTCCGGGTGAAAGCTAG
*
27213672 GAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGATAGCTTAATTTCATTTA
322 GAGTTAATCGGGTTTACTAGTCA-----TTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTA
* * * *
27213737 AAAATCGGTAAATAATATTCCGAAAAATAAAAATATTTATTGAGAAATTAATTTTTTGATTTTAA
381 AAAATCGGTAAATAATATTCCGGAAAATAAAAATATTT-TTGAGAAATCAATTTTATGGTTTTAA
* *
27213802 A-AGTTTTTTTGTTAGA-TTAATATTTTA
445 ATA-TTTTTTGGTTAGAGTAAATATTTTA
* **
27213829 TTGAAAAGTAAATTAAAATAAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
*
27213894 AAATAAAAATATTTTTTGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
* * * *
27213959 TAGGCTGGCACACAAATTCTTCTACGGGAGTATCGCCCAATATTTTTCGCTTTCCTTTCTAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
* * *
27214024 ACCAAATTCTGCTTATCTTTCATAGAAGCTCCTCGATCACAATCCTAATTGTCAAAACCTACATG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
** * *
27214089 TAATTTCCCTAAAAATAGGCCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
*
27214154 AGTTAATCAGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAAAATTAGTTAGCTTAATTT-ATTT
323 AGTTAATCGGGTTTACTAGTCA-----TTTTTTT--AAAAAAAA-TAGTTAGCTTAATTTCATTT
27214218 AAAAATCGGTAAATAATATTCC-GAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAA
380 AAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAA
27214282 ATA-TTTTTGGTTAGAGTAAATATTTTA
445 ATATTTTTTGGTTAGAGTAAATATTTTA
27214309 TTGAAAAATAAATTAAAATGGAGA-AAGTTACAATATT-ACTAAACAGGTAAATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
*
27214372 AAATAAAATTATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
27214437 TAGGCTAGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
* * * *
27214502 ACCAAATTCTACTTATCTTTAATAGAAGCTCCTCGATGACAATCCTAATTGTTCAAACCTACTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * * *
27214567 TAATCACCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTCATCGGGGTTCCGAGTGAATGCTAG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATC-GGGTTCCGGGTGAAAGCTAG
27214632 GAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAA
322 GAGTTAATCGGGTTTACTAGTCA----TTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAA
* * *
27214697 AAATCGGTAAATAATATT-C-TAAAATAAAAATATTTATTGAGAAATTAATTTTATGATTTT-AA
382 AAATCGGTAAATAATATTCCGGAAAATAAAAATATTT-TTGAGAAATCAATTTTATGGTTTTAAA
27214759 -ATTTTTT-GTTAGAGT-AATATTTTA
446 TATTTTTTGGTTAGAGTAAATATTTTA
** *
27214783 TTG-AAAATAAATTAAAATAAAGAGAA-TTACAATATTAACTTAACGGT-AATAATATTCCGGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
* *
27214845 AATAAAAA-ATTTTTA-AAAAATATAACTCACGAATATCATGAATACTAATACCCCTATCCTTTT
66 AATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTTT
27214908 AGGCTGGCACACAAATTCTTCCACGGGAGTATCG-CCAATATTTTCCTCTTTCCTTTCCAGACCA
130 AGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
* * *
27214972 CCAAATTCTACTTATCTTTGATAGAAGCAT-CTCGATCACAATCCTAATTGTCTAAATCTACTTG
194 CCAAATTCTGCTTATCTTTGATAGAAGC-TCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * *
27215036 TAATCGCCCTAAAAA-AGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAAG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
* ** *
27215100 AGTTAATCGAGTTTACTAGTCATTTTTTTAAAAAAAAATTAGCCAGCTTAATTTCATTTAAAATT
323 AGTTAATCGGGTTTACTAGTCATTTTTTT-AAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAAT
*
27215165 CAGTAAATAATATTCC-GAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTT
386 CGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTT
*
27215229 TTTGGTTCGAGTAAATATTTTA
451 TTTGGTTAGAGTAAATATTTTA
*
27215251 TTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
27215316 AAATAAAAATATTTTT-GAAAAATATCACTCACGAATATCAT-AATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
*
27215379 TAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTACTCTTTCCTTTCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
*
27215444 ACCAAATTCT-CTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTTCAAACCTACTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * *
27215508 TAATCACCCTAAAAATAGGTCTACCAGTTTTGAGTAAG-TTATCGGGTTCCGAGTGAATGCTAGG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
****
27215572 AGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTTAAAATAGTTAGCTTAATTTCATTTAAAAAT
323 AGTTAATCGGGTTTACTAGTCA-T-TTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAAT
* * *
27215637 CGGTAAATAATATT-C-AAAAATAAAAATATTTATTGAGAAATTAATTTTATGATTTTAAA-AGT
386 CGGTAAATAATATTCCGGAAAATAAAAATATTT-TTGAGAAATCAATTTTATGGTTTTAAATA-T
27215699 TTTTTGGTTAGAGT-AATATTTTA
449 TTTTTGGTTAGAGTAAATATTTTA
* **
27215722 TTGAAAAGTAAATTAAAATAAAGAGAA-TTACAATATTAACTAAACGGGT-AATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
* *
27215785 AAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATTAATACTAATACCCCTATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
* *
27215850 TAGGCTGGCACACAAATTCTTCCACGGGAGTATCACCAAATATTTTCCTCTTTCCTTTCCAGACC
129 TAGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
* * * * * *
27215915 ACCAAATTCTACTTATCTGTGATAGAAGCTTCTCGATCACAATCCTAATTGTCTAAATCTAATTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * *
27215980 TAATCGCCCTAAAAAAAGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
* * * **
27216045 AGTTAATCGAGTTTACTAGTAATTGTTTTTTTTTAAAAAAATTAGCCAGCTTAATTTCATTTAAA
323 AGTTAATCGGGTTTACTAGTCA-----TTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAA
*
27216110 ATTCGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATA
383 AATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATA
*
27216175 TTTTTTGGTTCGAGTAAATATTTTA
448 TTTTTTGGTTAGAGTAAATATTTTA
27216200 TTGAAAAATAAATTAAAAT-GAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
27216264 AATAAAAAT-TTTTT--AAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
66 AATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
27216326 GGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTACCTCTTTCCTTTCCAGACCA
131 GGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT-CCTCTTTCCTTTCCAGACCA
27216391 CCAAATTCT-CTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT-CAAACCTACTTGT
194 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
* * * * *
27216454 AATCACCCTAAAAATCGGTCTACCAGTTTTGAGTAAGTTCATCGGGTTCCGAGTGAATGCTAGGA
259 AATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
*** *
27216519 GTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAATTAGTTAGCTTAATTTCATTTAAAAATCG
324 GTTAATCGGGTTTACTAGTCATT-TTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCG
** * *
27216584 GTAAATAATATT-CTTAAAA-AAAAATATTTATTGAGAAATTAATTTTATGATTTTAAA-AGTTT
388 GTAAATAATATTCCGGAAAATAAAAATATTT-TTGAGAAATCAATTTTATGGTTTTAAATA-TTT
27216646 TTTGGTTAGAGT-AATATTTTA
451 TTTGGTTAGAGTAAATATTTTA
* *
27216667 TTGAAAAGTAAATTAAAAT-AAGAGAA-TTACAATATTAACTAAACGGTAAATAATATTCCGGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
* *
27216730 AATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATTAATGCTAATA-CCCCATCCTTTT
66 AATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTTT
27216794 AGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
130 AGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
* * * *
27216859 CCAAATTCTACTTATCTTTGATAGAAGCACCTCGATCACAATCCTAATTGTCTAAATCTACTTGT
194 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
* * * *
27216924 AATCGCCCTAAAAA-AGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCTGGGTGAATGCTAAGA
259 AATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
* **
27216988 GTTAATCGAGTTTACTAGTCATTGTTTTTTAAAAAAAATTAGCCAGCTTAATTTCATTT-AAAAT
324 GTTAATCGGGTTTACTAGTCA-T-TTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAAT
27217052 CGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTT
386 CGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTT
*
27217117 TTTGGTTCGAGTAAATATTTTA
451 TTTGGTTAGAGTAAATATTTTA
*
27217139 TTG-AAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
27217203 AATAAAAATATTTTT-GAAAAATATCACTCACGAATATCATGAATACTAATA-CCCCATCCTTTT
66 AATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTTT
27217266 AGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTACCTCTTTCCTTTCCAGACC
130 AGGCT-GCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT-CCTCTTTCCTTTCCAGACC
* *
27217331 ACCAAATTCT-CTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATAGTCCAAACCTATTTG
193 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * *
27217395 TAATCACCCTAAAAATAGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGAGTGAATGCTAG
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGG-GTGAAAGCTAG
* *
27217460 GAGTTAATCGGGTTTACTAGTTATTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAATAT
322 GAGTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAAT
* * *
27217525 CGGTAAATAATATTCTGGAAAATAAAAATATTTTTTGAGAAAACAATTTTCTGGTTTTAAATA-T
386 CGGTAAATAATATTCCGGAAAATAAAAATA-TTTTTGAGAAATCAATTTTATGGTTTTAAATATT
*
27217589 TTTT--TTATAGTAAATATTTTA
450 TTTTGGTTAGAGTAAATATTTTA
* * * * *
27217610 TTGAAAGATAAATTAAAATTGAGGGAAGTTAAAATATTAATTAAACGGGTAAATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAAC-GGTAAATAATATTCCGGA
*
27217675 AAATAAAAATACTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCCTTT
65 AAATAAAAATATTTTTAGAAAAATATCA-TCACGAATATCATGAATACTAATACCCCCATCCTTT
27217740 TAGGCTGCACACAAATTCTTCCA-GGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
129 TAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
*
27217804 CCAAATTC-GCTTATCTTTGATAGAAGCTCCTCAATCACAATCCTAATTGTCCTAAACCTACTTG
194 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCC-AAACCTACTTG
* *
27217868 TAATCGCCCTAAAAA-AGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCC-GGTGAATGCTA-G
258 TAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGG
* * *
27217930 AGTTAATAGAGTTTACTAG-CATTTTTTTTAAAAAAAATTAGTCAGCTTAATTTCATTTAAAAAT
323 AGTTAATCGGGTTTACTAGTCA-TTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAAT
*
27217994 CAGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTT
386 CGGTAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTT
27218059 TTTGGTTAGAGTAAATATTTTA
451 TTTGGTTAGAGTAAATATTTTA
*
27218081 TT-AAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAATAGGT-AATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAA-CGGTAAATAATATTCCGGA
*
27218144 AAATAAAAATATTTTT-GAAAAATATCATCACGAATATCGTGAATACTAATA-CCCCATCCTTTT
65 AAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTT
*
27218207 AGGCTGCACACATATTCTTCCACGGGAGTATCGCCCAA-ATTTTCCTCTTTCCTTTCCA-ACCAC
130 AGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCAC
27218270 CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTA
195 CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTA
*
27218335 ATCACCCTAAAAATAGGTCTA-CAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
260 ATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
27218399 TTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGT
325 TTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGT
27218464 AAATAATATTCC-GAAAATAAAAATATTTATTGAGAAAT-AATTTTATGGTTTTAAA-ATTTTTT
390 AAATAATATTCCGGAAAATAAAAATATTT-TTGAGAAATCAATTTTATGGTTTTAAATATTTTTT
27218526 GGTTAGAGTAAATATTTTA
454 GGTTAGAGTAAATATTTTA
* *
27218545 TTGAAAAGTAAATTAAAATGAAGAGAA-TTACAATATTAACTAAACGGTAAATAATATTCCGGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
27218609 AATAAAAATATTTTTAGAAAAATAT-ATCACGAATATCATGAATACTAATA-CCCCATCCTTTTA
66 AATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
27218672 GGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
131 GGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
*
27218736 AAATTCTACTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
196 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
*
27218801 TCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGT
261 TCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
27218866 TAATC-GGTTTACTAGT-ATTTTTTTAAAAAAAATTAG-TAGCTTAATTTCATTT-AAAATCGGT
326 TAATCGGGTTTACTAGTCATTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGT
27218927 AAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATA-TTTTTG
390 AAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
27218991 GTTAGA-TAAATATTTTA
455 GTTAGAGTAAATATTTTA
27219008 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGT-AATAATATTCCGGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
27219072 AATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
66 AATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
27219137 GG-TGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
131 GGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
27219201 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
196 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
*
27219266 TCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
261 TCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
*
27219331 TAATCGGGTTTACTAGTCATTTTTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
326 TAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTA
27219396 AATAATATTCC-GAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATA-TTTTTGG
391 AATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGG
27219459 TTA-AGT-AATATTTTA
456 TTAGAGTAAATATTTTA
*
27219474 TTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGT-AATAATATTCCGGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
27219538 AATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATA-CCCCATCCTTTTA
66 AATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
27219602 GGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
131 GGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
27219666 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
196 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
*
27219731 TCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGT
261 TCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
27219796 TAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGT
326 TAATCGGGTTTACTAGTCATTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGT
27219861 AAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
390 AAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
27219926 GTTAGA-TAAATATTTTA
455 GTTAGAGTAAATATTTTA
27219943 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGT-AATAATATTCCGGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
27220007 AATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
66 AATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
27220069 GGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
131 GGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
27220133 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
196 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
*
27220198 TCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTG-AAGCTAGGAGT
261 TCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
27220262 TAATCGGGTTTACTAGTCA-TTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGT
326 TAATCGGGTTTACTAGTCATTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGT
27220326 AAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
390 AAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
*
27220391 GTTA-AATAAATATTTTA
455 GTTAGAGTAAATATTTTA
27220408 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGT-AATAATATT-CGGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
27220471 AATAAAAATA-TTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
66 AATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
27220535 GGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
131 GGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
27220599 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
196 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
*
27220664 TCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
261 TCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
27220729 TAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGT
326 TAATCGGGTTTACTAGTCATTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGT
27220794 AAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTT
390 AAATAATATTCCGGAAAATAAAAATATTTTT-GAGAAATCAATTTTATGGTTTTAAATATTTTTT
*
27220859 GGTTA-AATAAATATTTTA
454 GGTTAGAGTAAATATTTTA
*
27220877 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAATAGGT-AATAATATT-CGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAA-CGGTAAATAATATTCCGGA
27220940 AAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATA-CCCCATCCTTTT
65 AAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTT
27221001 AGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCAC
130 AGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCAC
27221065 CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTA
195 CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTA
*
27221130 ATCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
260 ATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
27221195 TTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
325 TTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGG
27221260 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTT
389 TAAATAATATTCCGGAAAATAAAAATATTTTT-GAGAAATCAATTTTATGGTTTTAAATATTTTT
*
27221324 TGGTTA-AATAAATATTTTA
453 TGGTTAGAGTAAATATTTTA
*
27221343 TTG-AAAATAAATTAAAATGGGAGAGAAGTTACAATATTAACTAAATAGGT-AATAATATT-CGG
1 TTGAAAAATAAATTAAAAT-GGAGAGAAGTTACAATATTAACTAAA-CGGTAAATAATATTCCGG
27221405 AAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCATCCTTT
64 AAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTT
27221467 TAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
129 TAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
27221531 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
194 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
*
27221596 AATCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
259 AATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
*
27221661 GTTAATCGGGTTTACTAGTCA-TTTTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
324 GTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGG
27221725 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
389 TAAATAATATTCCGGAAAATAAAAATATTTTT-GAGAAATCAATTTTATGGTTTTAAATATTTTT
*
27221790 TGGTTA-AATAAATATTTTA
453 TGGTTAGAGTAAATATTTTA
27221809 TTGAAAAATAAATTAAAATGGGAGAGAAGTTACAATATTAACTAAACGGT-AATAATATT-CGGA
1 TTGAAAAATAAATTAAAAT-GGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGA
27221872 AAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATA-CCCCATCCTTTT
65 AAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTT
27221933 AGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCAC
130 AGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCAC
27221997 CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTA
195 CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTA
*
27222062 ATCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATC-GGTTCCGGGTGAAAGCTAGGAG
260 ATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
*
27222126 TTAATCGGGTTTACTAGTCATTTTTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGT
325 TTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGT
27222191 AAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTTT
390 AAATAATATTCCGGAAAATAAAAATATTTTT-GAGAAATCAATTTTATGGTTTTAAATATTTTTT
*
27222255 GGTTA-AATAAATATTTTA
454 GGTTAGAGTAAATATTTTA
*
27222273 TTG-AAAATAAATTAAAATGGGAGAGAAGTTACAATATTAACTAAATAGGT-AATAATATT-CGG
1 TTGAAAAATAAATTAAAAT-GGAGAGAAGTTACAATATTAACTAAA-CGGTAAATAATATTCCGG
27222335 AAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATA-CCCCATCCTTT
64 AAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTT
27222396 TAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
129 TAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
27222460 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
194 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
27222525 AATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
259 AATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
*
27222590 GTTAATC-GGTTTACTAGTCATTTTTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
324 GTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGG
27222654 TAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATA-TTTTT
389 TAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTT
27222718 GGTTA-A-TAAATATTTTA
454 GGTTAGAGTAAATATTTTA
27222735 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAA-GGT-AATAATATT-CGGAA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
27222797 AATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
66 AATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
27222859 GGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
131 GGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
27222923 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
196 AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
*
27222988 TCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
261 TCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
*
27223053 TAATCGGGTTTACTAGTCATTTTTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
326 TAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTA
27223118 AATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGG
391 AATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGG
*
27223183 TTA-AATAAATATTTTA
456 TTAGAGTAAATATTTTA
*
27223199 TTGAAAAATAAATTAAAATGGGAGAGAAGTTACAATATTAACTAAATAGGT-AATAATATT-CGG
1 TTGAAAAATAAATTAAAAT-GGAGAGAAGTTACAATATTAACTAAA-CGGTAAATAATATTCCGG
27223262 AAAATAAAAATATTTTTAGAAAAATAT-ATCACGAATATCATGAATACTAATACCCCCATCCTTT
64 AAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTT
27223326 TAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
129 TAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
27223390 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
194 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
27223455 AATCGCCCTAAAAATAGGTCTA-CAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
259 AATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
*
27223519 GTTAATCGGGTTTACTAGTCA-TTTTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
324 GTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGG
27223583 TAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTT
389 TAAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTT
*
27223648 GGTTA-AATAAATATTTTA
454 GGTTAGAGTAAATATTTTA
*
27223666 TTG-AAAATAAATTAAAATGGGAGAGAAGTTACAATATTAACTAAATAGGT-AATAATATT-CGG
1 TTGAAAAATAAATTAAAAT-GGAGAGAAGTTACAATATTAACTAAA-CGGTAAATAATATTCCGG
27223728 AAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCATCCTTT
64 AAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTT
27223790 TAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
129 TAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
27223854 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
194 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
*
27223919 AATCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
259 AATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
*
27223984 GTTAATCGGGTTTACTAGTCA-TTTTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
324 GTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGG
27224048 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
389 TAAATAATATTCCGGAAAATAAAAATATTTTT-GAGAAATCAATTTTATGGTTTTAAATATTTTT
*
27224113 TGGTTA-AATAAATATTTTA
453 TGGTTAGAGTAAATATTTTA
27224132 TTG-AAAATAAATTAAAATGGGAGAGAAGTTACAATATTAACTAAACGGT-AATAATATT-CGGA
1 TTGAAAAATAAATTAAAAT-GGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGA
27224194 AAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATA-CCCCATCCTTTT
65 AAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTT
27224255 AGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCAC
130 AGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCAC
27224319 CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTA
195 CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTA
*
27224384 ATCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
260 ATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
*
27224449 TTAATCGGGTTTACTAGTCA-TTTTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGT
325 TTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGT
27224513 AAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTT
390 AAATAATATTCCGGAAAATAAAAATATTTTT-GAGAAATCAATTTTATGGTTTTAAATATTTTTT
*
27224578 GGTTA-AATAAATATTTTA
454 GGTTAGAGTAAATATTTTA
*
27224596 TTGAAAAATAAATTAAAATGGGTTATGAGAAGTTACAATATTAACTAAATAGGT-AATAATATT-
1 TTGAAAAATAAATTAAAAT-GG--A-GAGAAGTTACAATATTAACTAAA-CGGTAAATAATATTC
27224659 CGGAAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATA-CCCCATCC
61 CGGAAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCC
27224720 TTTTAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGA
126 TTTTAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGA
27224784 CCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACT
191 CCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC-
*
27224849 TTTGTAATCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGC
255 -TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGC
*
27224914 TAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAA
319 TAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAA
27224979 ATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATA
384 ATCGGTAAATAATATTCCGGAAAATAAAAATATTTTT-GAGAAATCAATTTTATGGTTTTAAATA
*
27225044 TTTTTTGGTTA-AATAAATATTTTA
448 TTTTTTGGTTAGAGTAAATATTTTA
*
27225068 TTGAAAAATAAATTAAAATGGGAGAGAAGTTACAATATTAACTAAATAGGT-AATAATATT-CGG
1 TTGAAAAATAAATTAAAAT-GGAGAGAAGTTACAATATTAACTAAA-CGGTAAATAATATTCCGG
27225131 AAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCATCCTTT
64 AAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTT
27225193 TAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
129 TAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCA
27225257 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
194 CCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGT
*
27225322 AATCGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
259 AATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGA
27225387 GTTAATCGGGTTTACTAGTCA-TTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCG
324 GTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCG
27225451 GTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
388 GTAAATAATATTCCGGAAAATAAAAATATTTTT-GAGAAATCAATTTTATGGTTTTAAATATTTT
*
27225516 TTGGTTA-AATAAATATTTTA
452 TTGGTTAGAGTAAATATTTTA
* *
27225536 TTGAAAAATAAATTAAAATGGGTTTATTGAGAGAAGTTACAATATTAACTAAATAGGTATATAAT
1 TTGAAAAATAAATTAAAAT--G------GAGAGAAGTTACAATATTAACTAAA-CGGTAAATAAT
27225601 ATT-CGGAAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCC
57 ATTCCGGAAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCC
27225662 ATCCTTTTAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTC
122 ATCCTTTTAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTC
27225726 CAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACC
187 CAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACC
*
27225791 TACTTGTAATCGCAAATTTCCAAAGTATGTTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTT
252 TAC---T--T-G------T----A--A---------T--CGCCCTAAAAATAGGTCTACCAGTTT
27225856 TGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCA-TTTTTTA
288 TGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTTTTTA
27225920 AAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATAT
353 AAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATAT
* *
27225985 TTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
417 TTTT-GAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATTTTA
* *
27226042 TTGAAAAATAAATTAAAATGGGTTATGAGAAGTTACAATATTAACTAAATAGGTATATAATATT-
1 TTGAAAAATAAATTAAAAT-GG--A-GAGAAGTTACAATATTAACTAAA-CGGTAAATAATATTC
27226106 CGGAAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCATCC
61 CGGAAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCC
27226168 TTTTAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT-C-CTTTCCTTTCCAGA
126 TTTTAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGA
27226230 CCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACT
191 CCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC-
*
27226295 TGTAATCGCAATTTCCAAAGTATGTTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGT
255 --T--T-G-----T----A--A---------T--CGCCCTAAAAATAGGTCTACCAGTTTTGAGT
27226360 AAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCA-TTTTTTAAAAAA
293 AAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAAAA
*
27226424 ATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAG
358 AATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTT-G
* *
27226489 AGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
422 AGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATTTTA
* *
27226540 TTG-AAAATAAATTAAAATGGGTTATTGAGAAGTTACAATATTAACTAAATAGGTATATAATATT
1 TTGAAAAATAAATTAAAAT-GG--A--GAGAAGTTACAATATTAACTAAA-CGGTAAATAATATT
27226604 -CGGAAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCATC
60 CCGGAAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATC
27226665 CTTTTAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
125 CTTTTAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
27226729 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
190 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* *
27226794 TTGTAATCGCAAATTTTCAAAGTATGTTGTTTGTAACGCCCTAAAATAGGTCTACTAGTTTTGAG
255 TTGTAATCGC-------C--------------CT-A------AAAATAGGTCTACCAGTTTTGAG
27226859 TAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAAA
292 TAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAAA
*
27226924 AATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTA
357 AAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTT-
*
27226989 GAGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTTA-AATAAATATTTTA
421 GAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATTTTA
* *
27227039 TTGAAAAATAAATTAAAATGGGTTTAGAGAAGTTACAATATTAACTAAATAGGTATATAATATT-
1 TTGAAAAATAAATTAAAAT-GG---AGAGAAGTTACAATATTAACTAAA-CGGTAAATAATATTC
27227103 CGGAAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCATCC
61 CGGAAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCC
27227165 TTTTAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGA
126 TTTTAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGA
27227229 CCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACT
191 CCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACT
*
27227294 TGTAATCCAAATTTCCAAGTATGTTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTA
256 TG-----------T---A--A---------T--CGCCCTAAAAATAGGTCTACCAGTTTTGAGTA
27227359 AGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATC-GGTTTACTAGTCA-TTTTTTAAAAAAA
294 AGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAA
27227422 ATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAG
359 A-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTT-G
* *
27227487 AGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
422 AGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATTTTA
* *
27227538 TTGAAAAATAAATTAAAATGGGTTTATTGAGAAGTTACAATATTAACTAAATAGGTATATAATAT
1 TTGAAAAATAAATTAAAAT-GG---A--GAGAAGTTACAATATTAACTAAA-CGGTAAATAATAT
27227603 T-CGGAAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCAT
59 TCCGGAAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCAT
27227664 CCTTTTAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
124 CCTTTTAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
27227728 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
189 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
*
27227793 CTTGTAATCGCAAATTTCCAAAGTATGTTGTTTGTAACGCCTAAAAATAGGTCTACTAGTTTTGA
254 CTTG---T----AA--T-C--------------G---C-CCTAAAAATAGGTCTACCAGTTTTGA
27227858 GTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAA
291 GTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAA
27227923 AAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTT
356 AAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTT
*
27227988 TAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA-AATAAATATTTTA
420 T-GAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATTTTA
* *
27228041 TTG-AAAATAAATTAAAATGGGTTATTGAGAAGTTACAATATTAACTAAATAGGTATATAATATT
1 TTGAAAAATAAATTAAAAT-GG--A--GAGAAGTTACAATATTAACTAAA-CGGTAAATAATATT
27228105 -CGGAAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCATC
60 CCGGAAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATC
27228166 CTTTTAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
125 CTTTTAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
27228230 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
190 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
*
27228295 TTGTAATCGCAAATTTCAAAGTATGTTGTTTGTAACGCCTAAAAATAGGTCTACTAGTTTTGAGT
255 TTG---T----AA--TC--------------G---C-CCTAAAAATAGGTCTACCAGTTTTGAGT
27228360 AAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCA-TTTTTTAAAAAA
293 AAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAAAA
27228424 AATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTA
358 AA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTT-
* *
27228489 GAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
421 GAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATTTTA
* *
27228541 TTG-AAAATAAATTAAAATGGGTTATTGAGAAGTTACAATATTAACTAAATAGGTATATAATATT
1 TTGAAAAATAAATTAAAAT-GG--A--GAGAAGTTACAATATTAACTAAA-CGGTAAATAATATT
27228605 -CGGAAAATAAAAATATTTTTAG-AAAA-AT-ATCACGAATATCATGAATACTAATACCCCCATC
60 CCGGAAAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATC
27228666 CTTTTAGGCTG-ACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
125 CTTTTAGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
27228730 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAA
190 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCT-A
* *
27228795 CATTTCAAGTATGTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCC
254 C--TT---GTA-----ATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCC
*
27228860 GGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAATTAGTTAGCTTAATT
309 GGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATT
27228925 TCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATG
374 TCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTT-GAGAAATCAATTTTATG
*
27228990 GTTTTAAATATTTTTTGGTTA-AATAAATATTTTA
438 GTTTTAAATATTTTTTGGTTAGAGTAAATATTTTA
27229024 TTG-AAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAATA-GGT-AATAATATTCCGGA
1 TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAA-ACGGTAAATAATATTCCGGA
27229086 AAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTT
65 AAATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTT
27229151 AGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCAC
130 AGGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCAC
27229216 CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTA
195 CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTA
27229281 AT--CCCT-AAAATAGGTCTACCAG-TTTGAGTAAGTTTATC-GGTTCC-GGTG--A-CTAGGAG
260 ATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
*
27229337 TTAATC-GGTTTACTAGTCATTTTTTT-AAAAAATTAGTTAGCTTAATTTCATTT-AAAATCGGT
325 TTAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGT
27229399 -AATAATATT-CGG--AA-AAAAATATTTTTGAGAAATCAATTTT-TGGTTTTAAATATTTTTT-
390 AAATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
27229457 GTTAGAGTAAATA-TTTA
455 GTTAGAGTAAATATTTTA
27229474 TT---AAATAAATTAA
1 TTGAAAAATAAATTAA
27229487 TAGGAATAAT
Statistics
Matches: 19543, Mismatches: 557, Indels: 718
0.94 0.03 0.03
Matches are distributed among these distances:
448 11 0.00
450 10 0.00
451 25 0.00
452 14 0.00
453 12 0.00
454 2 0.00
456 3 0.00
457 9 0.00
458 9 0.00
459 27 0.00
460 85 0.00
461 224 0.01
462 157 0.01
463 258 0.01
464 1333 0.07
465 1550 0.08
466 1132 0.06
467 1316 0.07
468 609 0.03
469 1162 0.06
470 438 0.02
471 412 0.02
472 977 0.05
473 528 0.03
474 388 0.02
475 357 0.02
476 516 0.03
477 878 0.04
478 1127 0.06
479 1062 0.05
480 681 0.03
481 473 0.02
482 341 0.02
483 317 0.02
484 219 0.01
485 17 0.00
488 2 0.00
489 1 0.00
492 2 0.00
493 2 0.00
494 6 0.00
495 1 0.00
496 13 0.00
497 124 0.01
498 338 0.02
499 525 0.03
500 635 0.03
501 591 0.03
502 232 0.01
503 33 0.00
504 117 0.01
505 201 0.01
506 33 0.00
510 1 0.00
513 1 0.00
515 1 0.00
519 1 0.00
524 1 0.00
526 3 0.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (472 bp):
TTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGTAAATAATATTCCGGAA
AATAAAAATATTTTTAGAAAAATATCATCACGAATATCATGAATACTAATACCCCCATCCTTTTA
GGCTGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACC
AAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAA
TCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGT
TAATCGGGTTTACTAGTCATTTTTTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTA
AATAATATTCCGGAAAATAAAAATATTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGG
TTAGAGTAAATATTTTA
Found at i:27245505 original size:39 final size:39
Alignment explanation
Indices: 27245311--27245529 Score: 206
Period size: 40 Copynumber: 5.5 Consensus size: 39
27245301 ACCCAAGTTT
* * * * * *
27245311 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATA-AATCACTAGCATAAATGC
* * * * * * *
27245350 CTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATAAATC-ACTAGCATAAATGC
* * * * *
27245390 CTTCGGGTCTTAGCCTGGATATATCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATAAATC-ACTAGCATAAATGC
*
27245430 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGAT-AAATCACTAGCATAAATGC
*
27245470 CTTCGGGACTTAGCCCGAATAAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATAAATCACTAGCATAAATGC
*
27245509 CTTCGGGACTTAGCTCGGATA
1 CTTCGGGACTTAGCCCGGATA
27245530 TCATTCAAAT
Statistics
Matches: 155, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 49 0.32
40 102 0.66
41 4 0.03
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATAAATCACTAGCATAAATGC
Found at i:27249734 original size:42 final size:42
Alignment explanation
Indices: 27249675--27249755 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
27249665 GGGACACAGA
27249675 CCGACCATATGTCTCACATGGCCAAAGACACGCCCGTGTGGC
1 CCGACCATATGTCTCACATGGCCAAAGACACGCCCGTGTGGC
* *
27249717 CCGACCATGTGTCTCACATGGCTAAAGACACGCCCGTGT
1 CCGACCATATGTCTCACATGGCCAAAGACACGCCCGTGT
27249756 CACAGGCCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.23, C:0.35, G:0.23, T:0.19
Consensus pattern (42 bp):
CCGACCATATGTCTCACATGGCCAAAGACACGCCCGTGTGGC
Found at i:27254457 original size:25 final size:25
Alignment explanation
Indices: 27254429--27254480 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
27254419 CTTGCTCTTG
27254429 TCCATAACCACAGTCCCTCTAGCTA
1 TCCATAACCACAGTCCCTCTAGCTA
27254454 TCCATAACCACAGTCCCTCTAGCTA
1 TCCATAACCACAGTCCCTCTAGCTA
27254479 TC
1 TC
27254481 ACATGTCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.40, G:0.08, T:0.25
Consensus pattern (25 bp):
TCCATAACCACAGTCCCTCTAGCTA
Found at i:27258971 original size:64 final size:64
Alignment explanation
Indices: 27258812--27258980 Score: 191
Period size: 64 Copynumber: 2.7 Consensus size: 64
27258802 TCTTTTGTAC
* * * *
27258812 ACATGGTGAACACTTAGTACCACCCATGT-GACCTAGC--CAGTTTATCTCGTAGCTCTTTTGTC
1 ACATGGTGTACACTTAGTACCACCCAT-TCGACCTAGCTACA-TATATCCCGTAGCTCTCTTGTC
27258874 T
64 T
* * * ** *
27258875 ACATGGTGTCCACTTGGAACCATGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCT
1 ACATGGTGTACACTTAGTACCACCCATTCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCT
* *
27258939 ACATGGTGTACACATAGTATCACCCATTCGACCTAGCTACAT
1 ACATGGTGTACACTTAGTACCACCCATTCGACCTAGCTACAT
27258981 CATAATGTCT
Statistics
Matches: 85, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
63 29 0.34
64 54 0.64
65 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (64 bp):
ACATGGTGTACACTTAGTACCACCCATTCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCT
Found at i:27259749 original size:30 final size:30
Alignment explanation
Indices: 27259715--27259775 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
27259705 TCCTTAACTC
27259715 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
27259745 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
27259775 A
1 A
27259776 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:27262363 original size:27 final size:27
Alignment explanation
Indices: 27262334--27262428 Score: 74
Period size: 27 Copynumber: 3.5 Consensus size: 27
27262324 ATAAATTATT
*
27262334 AATTTTTTAATTATAATATATATTTTT
1 AATTTTTTAATTATAATATATATTTTA
* *
27262361 AATTTAATTTTATTA-AA-ACTAT-TTATA
1 AATTT--TTTAATTATAATA-TATATTTTA
*
27262388 AATTTTTATAAATATAATATATA--TTA
1 AATTTTT-TAATTATAATATATATTTTA
27262414 AATTTTTTATATTAT
1 AATTTTTTA-ATTAT
27262429 TTATTTTTAA
Statistics
Matches: 53, Mismatches: 7, Indels: 17
0.69 0.09 0.22
Matches are distributed among these distances:
25 4 0.08
26 17 0.32
27 19 0.36
28 6 0.11
29 7 0.13
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (27 bp):
AATTTTTTAATTATAATATATATTTTA
Found at i:27265702 original size:390 final size:390
Alignment explanation
Indices: 27264981--27265761 Score: 1526
Period size: 390 Copynumber: 2.0 Consensus size: 390
27264971 GACTATTTAT
27264981 TTTTCTATTTGAGCGGCGTAGGAGGTGGAGTTGGACTGAAACTCTATGGTTGAAGTGATCATAAG
1 TTTTCTATTTGAGCGGCGTAGGAGGTGGAGTTGGACTGAAACTCTATGGTTGAAGTGATCATAAG
*
27265046 AATGAGGAATTTTCCTGTTGGTTGGGAGTAATCCCATATCGGGAAGCTAACATAAGAGTGGATGC
66 AATGAGGAATTTTCCTATTGGTTGGGAGTAATCCCATATCGGGAAGCTAACATAAGAGTGGATGC
27265111 GAAGCTGGCTTTAAATAGAGAGAACCACGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTT
131 GAAGCTGGCTTTAAATAGAGAGAACCACGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTT
27265176 CGCTTTATGGCGTGCTCATTTGGGTTGGGCGACGGCTAAGAGTGCTCGGAGCGTGGATTAACTCC
196 CGCTTTATGGCGTGCTCATTTGGGTTGGGCGACGGCTAAGAGTGCTCGGAGCGTGGATTAACTCC
*
27265241 AGTCTCCAATCAGTTGTGTATTTCTCACTACTCTAGCTGTAGGATGGCTACTTTGGGCCACGATA
261 AGTCTCCAACCAGTTGTGTATTTCTCACTACTCTAGCTGTAGGATGGCTACTTTGGGCCACGATA
27265306 GGCCAAAAGGGGCCATGTGGGCCCAATGGGCTTTCGGGCCCAATTGGATAAGTTGTTTGATTGTG
326 GGCCAAAAGGGGCCATGTGGGCCCAATGGGCTTTCGGGCCCAATTGGATAAGTTGTTTGATTGTG
*
27265371 TTTTCTATTTGAGCGGCGTAGGAGGTGGAGTTGGACTGAAACTCTGTGGTTGAAGTGATCATAAG
1 TTTTCTATTTGAGCGGCGTAGGAGGTGGAGTTGGACTGAAACTCTATGGTTGAAGTGATCATAAG
27265436 AATGAGGAATTTTCCTATTGGTTGGGAGTAATCCCATATCGGGAAGCTAACATAAGAGTGGATGC
66 AATGAGGAATTTTCCTATTGGTTGGGAGTAATCCCATATCGGGAAGCTAACATAAGAGTGGATGC
27265501 GAAGCTGGCTTTAAATAGAGAGAACCACGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTT
131 GAAGCTGGCTTTAAATAGAGAGAACCACGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTT
27265566 CGCTTTATGGCGTGCTCATTTGGGTTGGGCGACGGCTAAGAGTGCTCGGAGCGTGGATTAACTCC
196 CGCTTTATGGCGTGCTCATTTGGGTTGGGCGACGGCTAAGAGTGCTCGGAGCGTGGATTAACTCC
*
27265631 AGTCTCCAACCAGTTGTGTATTTCTCACTACTCTAGCTGTAGGATGGCTACTTTGGGCCACGATG
261 AGTCTCCAACCAGTTGTGTATTTCTCACTACTCTAGCTGTAGGATGGCTACTTTGGGCCACGATA
27265696 GGCCAAAAGGGGCCATGTGGGCCCAATGGGCTTTCGGGCCCAATTGGATAAGTTGTTTGATTGTG
326 GGCCAAAAGGGGCCATGTGGGCCCAATGGGCTTTCGGGCCCAATTGGATAAGTTGTTTGATTGTG
27265761 T
1 T
27265762 AGTAAATATT
Statistics
Matches: 387, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
390 387 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (390 bp):
TTTTCTATTTGAGCGGCGTAGGAGGTGGAGTTGGACTGAAACTCTATGGTTGAAGTGATCATAAG
AATGAGGAATTTTCCTATTGGTTGGGAGTAATCCCATATCGGGAAGCTAACATAAGAGTGGATGC
GAAGCTGGCTTTAAATAGAGAGAACCACGAGGAGAGTAAAGGTACCTTTCTTGGCTGATCCCTTT
CGCTTTATGGCGTGCTCATTTGGGTTGGGCGACGGCTAAGAGTGCTCGGAGCGTGGATTAACTCC
AGTCTCCAACCAGTTGTGTATTTCTCACTACTCTAGCTGTAGGATGGCTACTTTGGGCCACGATA
GGCCAAAAGGGGCCATGTGGGCCCAATGGGCTTTCGGGCCCAATTGGATAAGTTGTTTGATTGTG
Found at i:27265843 original size:27 final size:27
Alignment explanation
Indices: 27265813--27266137 Score: 370
Period size: 27 Copynumber: 12.1 Consensus size: 27
27265803 GCTAGCATTG
*
27265813 CCGAAATATCCCTGTAAGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
*
27265840 CCGAAATACCCCTATAAGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
* *
27265867 -CTAAAGTACCCCTATAAGGTAGAATTA
1 CCGAAA-TACCCCTGTAAGGTAGAATTA
*
27265894 CCAAAATACCCCTGTAAGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
* *
27265921 -CTAAAGTACCCCTATAAGGTAGAATTA
1 CCGAAA-TACCCCTGTAAGGTAGAATTA
* *
27265948 CCGAAATACCCCTATAGGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
**
27265975 CTAAAATACCCCTGTAAGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
* *
27266002 TCGAAATA-CCCTGTAGGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
* ** * *
27266028 CTGAAATACCATTGTAGGGTAGAAATA
1 CCGAAATACCCCTGTAAGGTAGAATTA
* *
27266055 CCAAAATACCCCTGTAGGGTAGAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
27266082 CCGAAATACCCCTGT-AGAGTAGAATTA
1 CCGAAATACCCCTGTAAG-GTAGAATTA
* * ** *
27266109 CCGAGATACCCTTGTGGGGTAAAATTA
1 CCGAAATACCCCTGTAAGGTAGAATTA
27266136 CC
1 CC
27266138 ATTTTGCCCC
Statistics
Matches: 258, Mismatches: 33, Indels: 14
0.85 0.11 0.05
Matches are distributed among these distances:
26 32 0.12
27 217 0.84
28 9 0.03
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (27 bp):
CCGAAATACCCCTGTAAGGTAGAATTA
Found at i:27265958 original size:81 final size:81
Alignment explanation
Indices: 27265816--27266138 Score: 411
Period size: 81 Copynumber: 4.0 Consensus size: 81
27265806 AGCATTGCCG
* *
27265816 AAATATCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTA-CTAAAGTACCCCT
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCGAAA-TACCCCT
*
27265880 ATAAGGTAGAATTACCA
65 ATAGGGTAGAATTACCA
*
27265897 AAATACCCCTGTAAGGTAGAATTA-CTAAAGTACCCCTATAAGGTAGAATTACCGAAATACCCCT
1 AAATACCCCTGTAAGGTAGAATTACCGAAA-TACCCCTATAAGGTAGAATTACCGAAATACCCCT
*
27265961 ATAGGGTAGAATTACTA
65 ATAGGGTAGAATTACCA
* * * * ** *
27265978 AAATACCCCTGTAAGGTAGAATTATCGAAATA-CCCTGTAGGGTAGAATTACTGAAATACCATTG
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTA
*
27266042 TAGGGTAGAAATACCA
66 TAGGGTAGAATTACCA
* * * *
27266058 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT-AGAGTAGAATTACCGAGATACCCTT
1 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAG-GTAGAATTACCGAAATACCCCT
* * *
27266122 GTGGGGTAAAATTACCA
65 ATAGGGTAGAATTACCA
27266139 TTTTGCCCCT
Statistics
Matches: 214, Mismatches: 23, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
80 75 0.35
81 131 0.61
82 8 0.04
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (81 bp):
AAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTA
TAGGGTAGAATTACCA
Found at i:27266416 original size:24 final size:25
Alignment explanation
Indices: 27266340--27266409 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
27266330 AGGAAGTGCT
* * * *
27266340 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
27266365 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
27266390 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
27266410 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:27269487 original size:23 final size:23
Alignment explanation
Indices: 27269426--27269479 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
27269416 GGAACGAAAC
** *
27269426 AGAACACC-CCAAAGCAAATAAT
1 AGAACACCGCCAAAGTGACTAAT
*
27269448 AGAACATCGCCAAAGTGACTAAT
1 AGAACACCGCCAAAGTGACTAAT
27269471 AGAACACCG
1 AGAACACCG
27269480 TCGAAGTGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.48, C:0.26, G:0.15, T:0.11
Consensus pattern (23 bp):
AGAACACCGCCAAAGTGACTAAT
Found at i:27276048 original size:17 final size:17
Alignment explanation
Indices: 27276006--27276048 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
27275996 GCAAAATTTT
*
27276006 AAAGTTGTAGGGGTCAC
1 AAAGCTGTAGGGGTCAC
* *
27276023 AAAGTTGTAGGGGTCGC
1 AAAGCTGTAGGGGTCAC
*
27276040 ATAGCTGTA
1 AAAGCTGTA
27276049 TGACTCACCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.28, C:0.12, G:0.35, T:0.26
Consensus pattern (17 bp):
AAAGCTGTAGGGGTCAC
Found at i:27282648 original size:25 final size:27
Alignment explanation
Indices: 27282595--27282648 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
27282585 ATTCAACACC
* *
27282595 TAGGGGTATTTTGGTCATTTTTTCCCT
1 TAGGGGCATTTTGGTCATATTTTCCCT
27282622 TAGGGGCATTTTGGT-A-ATTTTCCCT
1 TAGGGGCATTTTGGTCATATTTTCCCT
27282647 TA
1 TA
27282649 ATTACAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 10 0.40
26 1 0.04
27 14 0.56
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.48
Consensus pattern (27 bp):
TAGGGGCATTTTGGTCATATTTTCCCT
Found at i:27282988 original size:29 final size:28
Alignment explanation
Indices: 27282931--27283016 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
27282921 TACCTGTATC
* *
27282931 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
27282959 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
27282988 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
27283016 T
1 T
27283017 TCATGCTCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 26 0.51
29 25 0.49
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:27283252 original size:16 final size:16
Alignment explanation
Indices: 27283227--27283269 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
27283217 GTAGCCAAAC
*
27283227 TTTTGACTTTTCGGCA
1 TTTTGGCTTTTCGGCA
27283243 TTTTGGCTTTTCGGCA
1 TTTTGGCTTTTCGGCA
*
27283259 TTTCGGCTTTT
1 TTTTGGCTTTT
27283270 GCCGATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.07, C:0.19, G:0.21, T:0.53
Consensus pattern (16 bp):
TTTTGGCTTTTCGGCA
Found at i:27288237 original size:16 final size:17
Alignment explanation
Indices: 27288205--27288240 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
27288195 ACAAAGAAAG
27288205 TTTAGGATTTCGAGATT
1 TTTAGGATTTCGAGATT
*
27288222 TTTAGG-TTTCGGGATT
1 TTTAGGATTTCGAGATT
27288238 TTT
1 TTT
27288241 GGGGTGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.17, C:0.06, G:0.25, T:0.53
Consensus pattern (17 bp):
TTTAGGATTTCGAGATT
Found at i:27294290 original size:25 final size:24
Alignment explanation
Indices: 27294257--27294339 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 24
27294247 TAGACCAATT
27294257 TGTCTGTATGATCTATTAATTGCA
1 TGTCTGTATGATCTATTAATTGCA
* **
27294281 TGTCATGTATTTTATGCTACCAATT---
1 TGTC-TGTA--TGAT-CTATTAATTGCA
27294306 TGTCTGTATGATCTATTAATTGCA
1 TGTCTGTATGATCTATTAATTGCA
27294330 TGTCATGTAT
1 TGTC-TGTAT
27294340 TTTATGCTGC
Statistics
Matches: 45, Mismatches: 6, Indels: 15
0.68 0.09 0.23
Matches are distributed among these distances:
21 7 0.16
22 3 0.07
24 12 0.27
25 13 0.29
27 3 0.07
28 7 0.16
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (24 bp):
TGTCTGTATGATCTATTAATTGCA
Found at i:27294304 original size:49 final size:49
Alignment explanation
Indices: 27294250--27294347 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
27294240 TAGCATGTAG
27294250 ACCAATTTGTCTGTATGATCTATTAATTGCATGTCATGTATTTTATGCT
1 ACCAATTTGTCTGTATGATCTATTAATTGCATGTCATGTATTTTATGCT
27294299 ACCAATTTGTCTGTATGATCTATTAATTGCATGTCATGTATTTTATGCT
1 ACCAATTTGTCTGTATGATCTATTAATTGCATGTCATGTATTTTATGCT
27294348 GCATTGCATC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.47
Consensus pattern (49 bp):
ACCAATTTGTCTGTATGATCTATTAATTGCATGTCATGTATTTTATGCT
Found at i:27298157 original size:93 final size:93
Alignment explanation
Indices: 27297998--27298168 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
27297988 GCCCATAAGT
* * *
27297998 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27298063 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
27298091 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
27298156 CGAGTTCGGATGC
66 CGAGCTCGGATGC
27298169 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:27298165 original size:46 final size:46
Alignment explanation
Indices: 27297990--27298165 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
27297980 TGTAACCCGC
* * *
27297990 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
27298036 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
27298082 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
27298129 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
27298166 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:27300591 original size:15 final size:15
Alignment explanation
Indices: 27300567--27300614 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
27300557 AGGAAACCGA
27300567 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
27300582 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
27300596 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
27300612 ATA
1 ATA
27300615 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:27307993 original size:40 final size:40
Alignment explanation
Indices: 27307898--27308114 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
27307888 TGGTTGATAA
*
27307898 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
27307939 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
27307979 CCGGGCTAAGTCCCGAAGGCATTT-TGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
27308018 CCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
27308058 CCGGGCTATGTCCTGAAGGCA-TTGAGCGAG-TACCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
27308097 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
27308115 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 14 0.09
39 50 0.32
40 64 0.41
41 24 0.15
42 4 0.03
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:27308046 original size:79 final size:79
Alignment explanation
Indices: 27307898--27308100 Score: 275
Period size: 79 Copynumber: 2.5 Consensus size: 79
27307888 TGGTTGATAA
* *
27307898 CCGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTTGCG--AGTTACTA-TATCCGGGCTAAGTCCCAAAGGCATT
* *
27307962 TGTGCGAGTTATTACAT
63 GGTGCGAGTTACTACAT
27307979 CCGGGCTAAGTCCCGAAGGCATTTTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTGGT
1 CCGGGCTAAGTCCCGAAGGCATTTTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTGGT
*
27308044 GCGAGTTACTATAT
66 GCGAGTTACTACAT
* * **
27308058 CCGGGCTATGTCCTGAAGGCATTGAGCGAG-TACCTATATCCGG
1 CCGGGCTAAGTCCCGAAGGCATTTTGCGAGTTA-CTATATCCGG
27308101 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
78 3 0.03
79 80 0.72
81 28 0.25
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTGGT
GCGAGTTACTACAT
Found at i:27315801 original size:39 final size:40
Alignment explanation
Indices: 27315687--27315868 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 40
27315677 GCTACTCGTT
* *
27315687 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATT-TAGTAACTCGCA
* *
27315727 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* *
27315767 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* * * * * *
27315806 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATTTAGTAAC-TCGCA
27315847 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
27315869 GGACATCATT
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.27
40 72 0.60
41 14 0.12
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
Found at i:27315855 original size:79 final size:80
Alignment explanation
Indices: 27315687--27315868 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 80
27315677 GCTACTCGTT
* **
27315687 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAA-GCCTTCGGGACTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
*
27315751 GATTTAGTAACTCACAC
64 GATATAGTAACTCACAC
* ** *
27315768 CAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAG
* * *
27315831 ATATGGTCACTTAGCA-
65 ATATAGTAACTCA-CAC
27315847 CAAAGCCTTCGGGACTTAGCCC
1 CAAAGCCTTCGGGACTTAGCCC
27315869 GGACATCATT
Statistics
Matches: 85, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 58 0.68
80 21 0.25
81 3 0.04
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTCACAC
Found at i:27319502 original size:40 final size:40
Alignment explanation
Indices: 27319407--27319623 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
27319397 TGGTTGATAA
* *
27319407 CCGGGCTAAGTCCCGAAGGCATTT-TACGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGT--GCGAGTTACTA-TAT
* *
27319448 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
27319488 CCGGGCTAAGTCCCGAAGGCATTT-TGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
27319527 CCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
27319567 CCGGGCTATGTCCTGAAGGCA-TTGAGCGAG-TACCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
27319606 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
27319624 TACTTGGCTT
Statistics
Matches: 155, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 14 0.09
39 50 0.32
40 66 0.43
41 24 0.15
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:27319555 original size:79 final size:79
Alignment explanation
Indices: 27319407--27319609 Score: 266
Period size: 79 Copynumber: 2.5 Consensus size: 79
27319397 TGGTTGATAA
* * *
27319407 CCGGGCTAAGTCCCGAAGGCATTTTACGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTT--GCGAGTTACTA-TATCCGGGCTAAGTCCCAAAGGCATT
* *
27319471 TGTGCGAGTTATTACAT
63 GGTGCGAGTTACTACAT
27319488 CCGGGCTAAGTCCCGAAGGCATTTTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTGGT
1 CCGGGCTAAGTCCCGAAGGCATTTTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTGGT
*
27319553 GCGAGTTACTATAT
66 GCGAGTTACTACAT
* * **
27319567 CCGGGCTATGTCCTGAAGGCATTGAGCGAG-TACCTATATCCGG
1 CCGGGCTAAGTCCCGAAGGCATTTTGCGAGTTA-CTATATCCGG
27319610 TTAAATCCCG
Statistics
Matches: 110, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
78 3 0.03
79 82 0.75
81 25 0.23
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTGGT
GCGAGTTACTACAT
Found at i:27321101 original size:14 final size:14
Alignment explanation
Indices: 27321078--27321104 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
27321068 ATATCTGTGA
27321078 AATTTTATCGTTTT
1 AATTTTATCGTTTT
27321092 AATTTTATCGTTT
1 AATTTTATCGTTT
27321105 GAGTGCCGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (14 bp):
AATTTTATCGTTTT
Found at i:27322222 original size:43 final size:42
Alignment explanation
Indices: 27322173--27322329 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 42
27322163 TATGTGTTCT
*
27322173 CGTGTAAGACCACGTCTGGGACATTAGCATCGATATGTAATCA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTAAT-A
* * * * * *
27322216 CGTGTAAGACCATGTTTGGGACATCGGCATCG-TATTTGATT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTAATA
* * *
27322257 CGGGTAAGACC-CTGTCTGGGACAGTGGCATTGATATG-AGATA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATGTA-ATA
* *
27322299 GCATGTAAGACCACGTCTAGGACATTGGCAT
1 -CGTGTAAGACCACGTCTGGGACATTGGCAT
27322330 TGTACGATAT
Statistics
Matches: 89, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
41 25 0.28
42 11 0.12
43 52 0.58
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTAATA
Found at i:27322322 original size:84 final size:84
Alignment explanation
Indices: 27322176--27322329 Score: 188
Period size: 84 Copynumber: 1.8 Consensus size: 84
27322166 GTGTTCTCGT
* * * * *
27322176 GTAAGACCACGTCTGGGACATTAGCATCGATATGTAATCACGTGTAAGACCATGTTTGGGACATC
1 GTAAGACCACGTCTGGGACAGTAGCATCGATATGTAATCACATGTAAGACCACGTCTAGGACATC
27322241 GGCATCGTATTTGATTCGG
66 GGCATCGTATTTGATTCGG
* *
27322260 GTAAGACC-CTGTCTGGGACAGTGGCATTGATATG-AGAT-AGCATGTAAGACCACGTCTAGGAC
1 GTAAGACCAC-GTCTGGGACAGTAGCATCGATATGTA-ATCA-CATGTAAGACCACGTCTAGGAC
*
27322322 ATTGGCAT
63 ATCGGCAT
27322330 TGTACGATAT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
83 3 0.05
84 56 0.95
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (84 bp):
GTAAGACCACGTCTGGGACAGTAGCATCGATATGTAATCACATGTAAGACCACGTCTAGGACATC
GGCATCGTATTTGATTCGG
Found at i:27330198 original size:43 final size:42
Alignment explanation
Indices: 27330150--27330301 Score: 134
Period size: 43 Copynumber: 3.6 Consensus size: 42
27330140 GTTATCATGC
*
27330150 AAGACCACGTCTGGGACATTGGCATCGATATGTGATCATGTGT
1 AAGACCACGTCTAGGACATTGGCATCGATATGTGAT-ATGTGT
* * *
27330193 AAGACCATGTCTAGAACATTGGCATCG-TATTTGAT-TCGTGT
1 AAGACCACGTCTAGGACATTGGCATCGATATGTGATAT-GTGT
* * *
27330234 AAGACC-CTGT-TTGGCACAATGGCATCGATATGAGATA-GCATGT
1 AAGACCAC-GTCTAGG-ACATTGGCATCGATATGTGATATG--TGT
* *
27330277 AAGACCACGCCTAGGACGTTGGCAT
1 AAGACCACGTCTAGGACATTGGCAT
27330302 TGTACGATGT
Statistics
Matches: 86, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
40 3 0.03
41 24 0.28
42 13 0.15
43 42 0.49
44 4 0.05
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (42 bp):
AAGACCACGTCTAGGACATTGGCATCGATATGTGATATGTGT
Found at i:27335104 original size:26 final size:26
Alignment explanation
Indices: 27335074--27335181 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
27335064 TGAAATTCCC
*
27335074 ATCATCGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27335100 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
27335126 ATCATGAAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
27335152 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27335178 ATCA
1 ATCA
27335182 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:27335854 original size:25 final size:25
Alignment explanation
Indices: 27335826--27335874 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
27335816 AATGATATGT
*
27335826 TTAAAGCATATATGAGAGTCAATCC
1 TTAAAACATATATGAGAGTCAATCC
27335851 TTAAAACATATATGAGAGTCAATC
1 TTAAAACATATATGAGAGTCAATC
27335875 TTGTGGCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (25 bp):
TTAAAACATATATGAGAGTCAATCC
Found at i:27339393 original size:43 final size:43
Alignment explanation
Indices: 27339256--27339428 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 43
27339246 ACATAGGATT
* * * ** *
27339256 TCGATATGTGATTTTGTGTAAGACCACGTCTGGGATGTTGGTA
1 TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
* * *
27339299 TCGAT-TTGAGATTTACGTGTAAGACCATGTTTAGGACATTGGCA
1 TCGATATT-TGATTT-CGTGTAAGACCATGTCTGGGACATTGGCA
* *
27339343 TC-ATATTTGATTTCGTGTAAGACCTTGTCTGGGACAATGGCA
1 TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
* * * * * *
27339385 TCGATATTTGATTACATATAAGACCACGTCTAGGACGTTGGCA
1 TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
27339428 T
1 T
27339429 TGTATGAGCT
Statistics
Matches: 104, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
42 28 0.27
43 50 0.48
44 26 0.25
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (43 bp):
TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
Found at i:27339512 original size:20 final size:20
Alignment explanation
Indices: 27339487--27339528 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
27339477 TTCAACGGGC
27339487 ATTTCAGGAAACAAATAACT
1 ATTTCAGGAAACAAATAACT
27339507 ATTTCAGGAAACAAATAACT
1 ATTTCAGGAAACAAATAACT
27339527 AT
1 AT
27339529 GCGAATGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.10, T:0.26
Consensus pattern (20 bp):
ATTTCAGGAAACAAATAACT
Found at i:27340028 original size:28 final size:27
Alignment explanation
Indices: 27339988--27340041 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
27339978 AAGGGACTTT
* *
27339988 ATGTTGATATTTGACTATGATATGATG
1 ATGTTGAAATTTGACTATGAAATGATG
*
27340015 ATGTATGAAATTTGACTCTGAAATGAT
1 ATGT-TGAAATTTGACTATGAAATGAT
27340042 TGCAAAATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.41
Consensus pattern (27 bp):
ATGTTGAAATTTGACTATGAAATGATG
Found at i:27342053 original size:25 final size:25
Alignment explanation
Indices: 27342025--27342077 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
27342015 ATAGAATATT
27342025 GAAGTAAGTTGGTTTGTGTCATTGC
1 GAAGTAAGTTGGTTTGTGTCATTGC
27342050 GAAGTAAGTTGGTTTGTGTCATTGC
1 GAAGTAAGTTGGTTTGTGTCATTGC
27342075 GAA
1 GAA
27342078 TGCACTTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.23, C:0.08, G:0.32, T:0.38
Consensus pattern (25 bp):
GAAGTAAGTTGGTTTGTGTCATTGC
Found at i:27356784 original size:13 final size:15
Alignment explanation
Indices: 27356757--27356787 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27356747 ATAAAAATTC
27356757 CAATCCAAAACATAT
1 CAATCCAAAACATAT
*
27356772 CAATCCAAAATATAT
1 CAATCCAAAACATAT
27356787 C
1 C
27356788 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.23
Consensus pattern (15 bp):
CAATCCAAAACATAT
Found at i:27363861 original size:27 final size:27
Alignment explanation
Indices: 27363830--27364005 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
27363820 TAAATTGTAC
27363830 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
27363857 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27363883 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
27363911 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27363939 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27363966 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27363993 AGCACTGAGTGTG
1 AGCACTAAGTGTG
27364006 TGGACTCAAT
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27363944 original size:82 final size:81
Alignment explanation
Indices: 27363831--27363986 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
27363821 AAATTGTACA
* *
27363831 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
27363895 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
27363912 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
27363977 TGCGAGTTGA
65 TGCGAATTGA
27363987 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27363998 original size:82 final size:81
Alignment explanation
Indices: 27363827--27364005 Score: 225
Period size: 82 Copynumber: 2.2 Consensus size: 81
27363817 GATTAAATTG
* *
27363827 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
27363892 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
27363908 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
27363972 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27363990 TATAGCACTGAGTGTG
1 TACAGCACTAAGTGTG
27364006 TGGACTCAAT
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27371974 original size:27 final size:27
Alignment explanation
Indices: 27371943--27372120 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
27371933 TAAATTGTAC
27371943 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
27371970 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27371996 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
27372024 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27372052 AGCACTGAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27372079 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27372106 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27372121 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.83
28 22 0.17
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27372057 original size:82 final size:81
Alignment explanation
Indices: 27371944--27372099 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
27371934 AAATTGTACA
*
27371944 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
27372008 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
27372025 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTGAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
27372090 TGCGAGTTGA
65 TGCGAATTGA
27372100 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27372111 original size:82 final size:81
Alignment explanation
Indices: 27371940--27372120 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
27371930 GATTAAATTG
*
27371940 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
27372005 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
27372021 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTGAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
27372085 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27372103 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
27372121 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27374519 original size:33 final size:34
Alignment explanation
Indices: 27374477--27374548 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
27374467 GACAGCCTAG
* *
27374477 TATCAGTGT-GGCCTTAGCCTATTACAGTAACAA
1 TATCAGTGTGGGACTTAGCCCATTACAGTAACAA
27374510 TATCAGTGTGGGACTTAGCCCATTACAGTAACAA
1 TATCAGTGTGGGACTTAGCCCATTACAGTAACAA
27374544 TATCA
1 TATCA
27374549 TAAATACGAG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 9 0.25
34 27 0.75
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (34 bp):
TATCAGTGTGGGACTTAGCCCATTACAGTAACAA
Found at i:27377951 original size:54 final size:55
Alignment explanation
Indices: 27377830--27377964 Score: 141
Period size: 54 Copynumber: 2.5 Consensus size: 55
27377820 CAATTTGATG
* *** **
27377830 AAATGACTATTTTGCCCTTATG-AGGTAAAATGACTGTTTTGCCCCTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTAGGTAAAATAACTGAAATGCCCCTACATGGTA
** * *
27377884 AAAAAATTGTTTTGCCCTTATGTA-GTAAAATAACTGAAATGCCCCTACATGGTA
1 AAATGACTATTTTGCCCTTATGTAGGTAAAATAACTGAAATGCCCCTACATGGTA
* *
27377938 AATTGACTATTTTGCCCCTATGT-GGTA
1 AAATGACTATTTTGCCCTTATGTAGGTA
27377965 TATGTTTAGA
Statistics
Matches: 63, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
54 62 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (55 bp):
AAATGACTATTTTGCCCTTATGTAGGTAAAATAACTGAAATGCCCCTACATGGTA
Found at i:27377963 original size:27 final size:27
Alignment explanation
Indices: 27377830--27377964 Score: 119
Period size: 27 Copynumber: 5.0 Consensus size: 27
27377820 CAATTTGATG
* *
27377830 AAATGACTATTTTGCCCTTATGAGGTA
1 AAATGACTATTTTGCCCCTATGTGGTA
*
27377857 AAATGACTGTTTTGCCCCTATGTGGTA
1 AAATGACTATTTTGCCCCTATGTGGTA
** * * * *
27377884 AAAAAATTGTTTTGCCCTTATGTAGTA
1 AAATGACTATTTTGCCCCTATGTGGTA
* ** **
27377911 AAATAACTGA-AATGCCCCTACATGGTA
1 AAATGACT-ATTTTGCCCCTATGTGGTA
*
27377938 AATTGACTATTTTGCCCCTATGTGGTA
1 AAATGACTATTTTGCCCCTATGTGGTA
27377965 TATGTTTAGA
Statistics
Matches: 83, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
26 1 0.01
27 82 0.99
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (27 bp):
AAATGACTATTTTGCCCCTATGTGGTA
Found at i:27384350 original size:29 final size:29
Alignment explanation
Indices: 27384308--27384363 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
27384298 TCTCTTTACT
27384308 AGTAACTTTACTAGTAGTGGTTTCAACAC
1 AGTAACTTTACTAGTAGTGGTTTCAACAC
27384337 AGTAACTTTACTAGTAGTGGTTTCAAC
1 AGTAACTTTACTAGTAGTGGTTTCAAC
27384364 CATAATACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (29 bp):
AGTAACTTTACTAGTAGTGGTTTCAACAC
Found at i:27391586 original size:27 final size:27
Alignment explanation
Indices: 27391565--27391736 Score: 238
Period size: 27 Copynumber: 6.4 Consensus size: 27
27391555 GGGTATCTTG
*
27391565 ATAATTCTACCTTACAGAGGTATTTCA
1 ATAATTCTACCTTACAGGGGTATTTCA
*
27391592 ATAATTCTACCTTACAAGGGTATTTCA
1 ATAATTCTACCTTACAGGGGTATTTCA
*
27391619 ATAATTCTATCC-TACAGGGGTATTTCG
1 ATAATTCTA-CCTTACAGGGGTATTTCA
* * *
27391646 GTAATTCTACCCTATAGGGGTATTTCA
1 ATAATTCTACCTTACAGGGGTATTTCA
* *
27391673 ATAAGTCTACCTTACAGGGGTATTTCG
1 ATAATTCTACCTTACAGGGGTATTTCA
*
27391700 GTAATTCTACCTTACAGGGGTATTTCA
1 ATAATTCTACCTTACAGGGGTATTTCA
*
27391727 GTAATTCTAC
1 ATAATTCTAC
27391737 AACTTATCCA
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.02
27 124 0.97
28 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (27 bp):
ATAATTCTACCTTACAGGGGTATTTCA
Found at i:27391623 original size:54 final size:54
Alignment explanation
Indices: 27391537--27391736 Score: 251
Period size: 54 Copynumber: 3.7 Consensus size: 54
27391527 GGGGAAAAAT
* ** * *
27391537 GGTAATTTTACCCCACAAGGGTATCTT-GATAATTCTACCTTACAGAGGTATTTC
1 GGTAATTCTACCTTACAAGGGTAT-TTCAATAATTCTACCTTACAGGGGTATTTC
**
27391591 AATAATTCTACCTTACAAGGGTATTTCAATAATTCTATCC-TACAGGGGTATTTC
1 GGTAATTCTACCTTACAAGGGTATTTCAATAATTCTA-CCTTACAGGGGTATTTC
* * * *
27391645 GGTAATTCTACCCTATAGGGGTATTTCAATAAGTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCTTACAAGGGTATTTCAATAATTCTACCTTACAGGGGTATTTC
* *
27391699 GGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCTTACAAGGGTATTTCAATAATTCTAC
27391737 AACTTATCCA
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
53 4 0.03
54 120 0.95
55 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCTTACAAGGGTATTTCAATAATTCTACCTTACAGGGGTATTTC
Found at i:27393434 original size:39 final size:39
Alignment explanation
Indices: 27393381--27393478 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 39
27393371 CCGGACATAT
** *
27393381 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCATATAGCCTGCGGACCTTAAGTCCGGGTATAA
* ** *
27393420 TTTC-GACATATAGCCTATGGACCTTAAGTTCGGGTATAA
1 TTCCAG-CATATAGCCTGCGGACCTTAAGTCCGGGTATAA
27393459 TTCCAGCATATAGCCTGCGG
1 TTCCAGCATATAGCCTGCGG
27393479 GTCTTTAAGC
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
38 1 0.02
39 45 0.96
40 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (39 bp):
TTCCAGCATATAGCCTGCGGACCTTAAGTCCGGGTATAA
Done.