Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 9 of 333
Found at i:2240953 original size:186 final size:187
Alignment explanation
Indices: 2240671--2241051 Score: 532
Period size: 186 Copynumber: 2.0 Consensus size: 187
2240661 TTCAGTTTTA
* * *
2240671 AAATTTTCAATGCATGTACTTTTAATTTGACTTATTGATATCCCAAGCTACTTGAGTTTAAGCTG
1 AAATTTTCAATCCATATACTTTTAATTTGACTTATTGATA-CCCAAGCTACTTGAGTTCAAGCTG
** * * * *
2240736 GACTTTGCAATTATCAAGATAAATTTGAGTTTCTTTTATGAATTCTTGTTTTTAGAGATCATAGA
65 GACTTTGCAATTATCAAGATAAAACTGAGTTTCTTTTATGAATTATTGTTTTGAAAGACCATAGA
* *
2240801 GTAATTGTAAGAAAGTTTAATTATTAAGGTAGTAATTATATCTTCTTGTAATTACAAT
130 ATAATTGTAAGAAAGTTTAACTATTAAGGTAGTAATTATATCTTCTTGTAATTACAAT
* * *
2240859 AAATTTTCAATCCCTATAC-TTTAATTTGACTTATTTGATA-GCAAGCTACTTGAGTTCAAGCTT
1 AAATTTTCAATCCATATACTTTTAATTTGACTTA-TTGATACCCAAGCTACTTGAGTTCAAGCTG
** * * *
2240922 GACTTTGCAATTATTGAGGTAAAACTGAGTTTCTTTTCTGAGTTATTGTTTTGAAAGACCATAGA
65 GACTTTGCAATTATCAAGATAAAACTGAGTTTCTTTTATGAATTATTGTTTTGAAAGACCATAGA
* * *
2240987 ATAGTTGTAAGAAAGTTTAACTATTAATGTAGTAATTATATCTTCTTGTAATTATAAT
130 ATAATTGTAAGAAAGTTTAACTATTAAGGTAGTAATTATATCTTCTTGTAATTACAAT
2241045 AAATTTT
1 AAATTTT
2241052 ATTTTTTAAA
Statistics
Matches: 170, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
186 134 0.79
187 14 0.08
188 22 0.13
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (187 bp):
AAATTTTCAATCCATATACTTTTAATTTGACTTATTGATACCCAAGCTACTTGAGTTCAAGCTGG
ACTTTGCAATTATCAAGATAAAACTGAGTTTCTTTTATGAATTATTGTTTTGAAAGACCATAGAA
TAATTGTAAGAAAGTTTAACTATTAAGGTAGTAATTATATCTTCTTGTAATTACAAT
Found at i:2244094 original size:19 final size:19
Alignment explanation
Indices: 2244070--2244128 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
2244060 ACTTTATATG
*
2244070 CACACATGATTTCACTAAT
1 CACACATGATTCCACTAAT
*
2244089 CACACATGGTTCCACTAAT
1 CACACATGATTCCACTAAT
* **
2244108 CAGACACAATTCCACTAAT
1 CACACATGATTCCACTAAT
2244127 CA
1 CA
2244129 AACACCATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.37, C:0.31, G:0.07, T:0.25
Consensus pattern (19 bp):
CACACATGATTCCACTAAT
Found at i:2245512 original size:3 final size:3
Alignment explanation
Indices: 2245506--2245561 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
2245496 ATTCAACTGC
2245506 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2245554 ATA ATA AT
1 ATA ATA AT
2245562 GATGCTGATG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:2245573 original size:3 final size:3
Alignment explanation
Indices: 2245560--2245589 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
2245550 AATAATAATA
*
2245560 ATG ATG CTG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
2245590 GAGGTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:2249480 original size:20 final size:20
Alignment explanation
Indices: 2249455--2249504 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
2249445 TGGCTTAAAA
2249455 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
2249475 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
2249492 GTGGTAGTGGATT
1 TTGGTAGTGGATT
2249505 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:2254117 original size:20 final size:20
Alignment explanation
Indices: 2254092--2254141 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
2254082 TGGCTTAAAA
2254092 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
2254112 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
2254129 GTGGTAGTGGATT
1 TTGGTAGTGGATT
2254142 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:2268507 original size:130 final size:132
Alignment explanation
Indices: 2268308--2268570 Score: 449
Period size: 130 Copynumber: 2.0 Consensus size: 132
2268298 TGATTATTCA
* *
2268308 TTTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATT
1 TTTAAAAATTCTTTAAAACGAAAGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATC
*
2268373 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAG-A-ATTTCACTCAT
66 GTGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATATTTCACTCAT
2268436 GT
131 GT
* *
2268438 TTTAAAAATTCTTTAAAATGAAAGTAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAAGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATC
*
2268503 GTGCTGGGTTGCAATCTCCCGTTTGTTCAAAATTATCGAATATTCCTTTAGAAATATTTCACTCA
66 GTGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAG-AATATTTCACTCA
2268568 TGT
130 TGT
2268571 CTTCTAAATC
Statistics
Matches: 124, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
130 110 0.89
132 1 0.01
133 13 0.10
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (132 bp):
TTTAAAAATTCTTTAAAACGAAAGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATATTTCACTCAT
GT
Found at i:2268605 original size:130 final size:130
Alignment explanation
Indices: 2268309--2268642 Score: 435
Period size: 130 Copynumber: 2.6 Consensus size: 130
2268299 GATTATTCAT
* * *
2268309 TTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATTG
1 TTAAAAATTCTCTAAAATGAAGGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATCG
* *
2268374 TGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTT
66 TGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTC
* * *
2268439 TTAAAAATTCTTTAAAATGAAAGTAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATCG
1 TTAAAAATTCTCTAAAATGAAGGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATCG
*
2268504 TGCTGGGTTGCAATCTCCCGTTTGTTCAAAATTATCGAATATTCCTTTAGAAATATTTCACTCAT
66 TGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAG--A-ATTTCACTCAT
2268569 GTC
128 GTC
** * *** * *
2268572 TTCTAAA-TC-CTAAAAT-AAGGCAATGCT-GAATGTTTAAAAATTCGAGGAATCATGCCCTA-C
1 TTAAAAATTCTCTAAAATGAAGGCAATGTTCG-ATGTTTGGGAATTCGGGGAATCGTGCCCTATC
2268632 TGTGCTGGGTT
65 -GTGCTGGGTT
2268643 AATTCGGTTT
Statistics
Matches: 181, Mismatches: 18, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
129 2 0.01
130 152 0.84
131 6 0.03
132 3 0.02
133 18 0.10
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36
Consensus pattern (130 bp):
TTAAAAATTCTCTAAAATGAAGGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATCG
TGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTC
Found at i:2270809 original size:76 final size:75
Alignment explanation
Indices: 2270723--2270869 Score: 240
Period size: 75 Copynumber: 1.9 Consensus size: 75
2270713 CTAAGTCATA
* **
2270723 TTTTTTTGTTATTATAACAATAAAAAAGTCGCCTGAATTAATACTCAATTGGATTAATTAATTTT
1 TTTTTTTGTTATTATAACAATAAAAAAATCG-CTGAATTAATACTCAATCAGATTAATTAATTTT
2270788 TTGGTGTTGAC
65 TTGGTGTTGAC
* *
2270799 TTTTTTTGTTATTATAACAATAAAAAAATCGCTGATTTAATACTCAATCAGATTAATTGATTTTT
1 TTTTTTTGTTATTATAACAATAAAAAAATCGCTGAATTAATACTCAATCAGATTAATTAATTTTT
2270864 TGGTGT
66 TGGTGT
2270870 CGAGTTCTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
75 36 0.55
76 30 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (75 bp):
TTTTTTTGTTATTATAACAATAAAAAAATCGCTGAATTAATACTCAATCAGATTAATTAATTTTT
TGGTGTTGAC
Found at i:2273203 original size:19 final size:18
Alignment explanation
Indices: 2273174--2273209 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
2273164 AACCGAACTC
*
2273174 AATTTATTCAATTTGATG
1 AATTTATTCAACTTGATG
2273192 AATTTAATTCAACTTGAT
1 AATTT-ATTCAACTTGAT
2273210 TGATGATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.47
Consensus pattern (18 bp):
AATTTATTCAACTTGATG
Found at i:2276147 original size:69 final size:67
Alignment explanation
Indices: 2276029--2276156 Score: 175
Period size: 69 Copynumber: 1.9 Consensus size: 67
2276019 ACAATATAAG
* **
2276029 GGTTTTGCCTTTTAACTTAATTAGTAAACATTTATCAAAACAACATAGTTTTACCTTTTAACTTA
1 GGTTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACAACATAGTTTTACCTTTTAACTTA
2276094 AT
66 AT
** * *
2276096 GGTTTTGACTTTTAACTTTAAAAAGGTAAACATTTATCAAAATGACGTAGTTTTGCCTTTT
1 GGTTTTGACTTTTAAC-TTAAAAA-GTAAACATTTATCAAAACAACATAGTTTTACCTTTT
2276157 CTTATTTGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
67 15 0.29
68 5 0.10
69 32 0.62
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (67 bp):
GGTTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACAACATAGTTTTACCTTTTAACTTA
AT
Found at i:2279295 original size:28 final size:26
Alignment explanation
Indices: 2279248--2279300 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 26
2279238 GAGATATAAT
2279248 TTTTATCTAATTAAAAATTAATTATTGA
1 TTTTATC-AATTAAAAATT-ATTATTGA
2279276 TTTTATC-ATTAAGAATATTATTATT
1 TTTTATCAATTAA-AA-ATTATTATT
2279301 TATGTATATC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
26 5 0.22
27 8 0.35
28 10 0.43
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (26 bp):
TTTTATCAATTAAAAATTATTATTGA
Found at i:2280316 original size:26 final size:27
Alignment explanation
Indices: 2280266--2280326 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
2280256 AAAAATAATT
2280266 TTTAAAATTTAAAATATTTAGAAAAAA
1 TTTAAAATTTAAAATATTTAGAAAAAA
* * *
2280293 TTTAAAATTTAAATTTTTTAAAAAAAA
1 TTTAAAATTTAAAATATTTAGAAAAAA
2280320 TTCTAAA
1 TT-TAAA
2280327 GGATATATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (27 bp):
TTTAAAATTTAAAATATTTAGAAAAAA
Found at i:2284211 original size:19 final size:20
Alignment explanation
Indices: 2284171--2284214 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
2284161 GTTTCTTTTG
* *
2284171 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
2284190 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
2284209 GCATTA
1 GCATTA
2284215 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:2288557 original size:50 final size:48
Alignment explanation
Indices: 2288492--2288654 Score: 122
Period size: 50 Copynumber: 3.4 Consensus size: 48
2288482 CTGTATTTGG
*
2288492 CAGTGGAATAGATTGAAGATCGAAGATGGAAGATTTTACCTCCCTGACTA
1 CAGTGGAATACATTGAAGATC-AAGATGG-AGATTTTACCTCCCTGACTA
* * * * * *
2288542 CAGTGGAGTACATTGAAG-TC--GAT--A-ACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGATCAAGATGGAGATTTTACCTCCCTG-A-CT-A
* * *
2288587 CAGTAGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTAACTA
1 CAGTGGAATACATTGAAGATC-AAGATGG-AGATTTTACCTCCCTGACTA
*
2288637 CAGTGGAGTACATTGAAG
1 CAGTGGAATACATTGAAG
2288655 CCAATAACTC
Statistics
Matches: 83, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
42 11 0.13
43 2 0.02
44 1 0.01
45 15 0.18
46 5 0.06
49 5 0.06
50 31 0.37
51 1 0.01
52 2 0.02
53 10 0.12
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (48 bp):
CAGTGGAATACATTGAAGATCAAGATGGAGATTTTACCTCCCTGACTA
Found at i:2288565 original size:95 final size:95
Alignment explanation
Indices: 2288411--2288701 Score: 501
Period size: 95 Copynumber: 3.0 Consensus size: 95
2288401 GTAGTGAAGC
*
2288411 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
2288476 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
2288508 AGATCGAAGATGGAAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGTCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
2288573 CTCCCTGTATTTGGCAGTAGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
2288603 AGATCAAAGATGGCAGATTTTACCTCCCTAACTACAGTGGAGTACATTGAAGCCAATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
2288668 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
2288698 AGAT
1 AGAT
2288702 TGCAGATCTT
Statistics
Matches: 183, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
95 158 0.86
97 25 0.14
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:2288823 original size:134 final size:134
Alignment explanation
Indices: 2288603--2289898 Score: 1884
Period size: 134 Copynumber: 9.7 Consensus size: 134
2288593 AATAGATTGA
* * *
2288603 AGATCAAAGATGGCAGATTTTACCTCCCTAACTACAGTGGAGTACATTGAAGCCAATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
2288668 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
2288733 AAGC
131 AAGC
2288737 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
2288802 CTCCCTGTATTCGGCAATGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
2288867 AAGC
131 AAGC
2288871 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
2288936 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
2289001 AAGC
131 AAGC
2289005 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
2289070 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
2289135 AAGC
131 AAGC
2289139 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
2289204 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
2289269 AAGC
131 AAGC
2289273 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
2289338 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
2289403 AAGC
131 AAGC
2289407 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * *
2289472 CTCCCTGTATTTGGCAGTGGAATAGATTGAATATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
2289537 AAGC
131 AAGC
* ** * * ** * * **
2289541 AGGTTGAAGACGGCGGATTTTACCTCCCTGATTACAGTAGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * * * * * ** * **
2289606 CTCCC-G----GGGCA--AGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATA-TTGATAG-
66 CTCCCTGTATTCGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
*
2289662 GAAGT
130 GAAGC
* * * * **** * * * ** *
2289667 GGATCCAAGAT-ACAGATCTTGT-CTTCCCAT-ACTGGTGGTGAAGTAGATCGAAGAAAGCA-GA
1 AGATCAAAGATGGCAGAT-TT-TACCTCCC-TGAC-CACAGTGGAGTACATTGAAG-CCG-ATAA
* * * * *
2289728 -TCT-TATCCCTGTATTTGACAGTGGAATAGATTGAGGATTGCAAATCTTGCCTTCCTGTATTTG
60 CTCTATCTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTG
2289791 GCAGCGAAGC
125 GCAGCGAAGC
* * * * *
2289801 AGATCGACGATGGCGGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAC
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
* ** *
2289866 CTCCCTGCATTCAACAGTGGAATAGAGTGAAGA
66 CTCCCTGTATTCGGCAGTGGAATAGATTGAAGA
2289899 GCACAAATCG
Statistics
Matches: 1044, Mismatches: 96, Indels: 44
0.88 0.08 0.04
Matches are distributed among these distances:
125 4 0.00
126 22 0.02
127 26 0.02
128 26 0.02
129 5 0.00
131 4 0.00
132 26 0.02
133 27 0.03
134 900 0.86
135 4 0.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTCGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:2289666 original size:44 final size:45
Alignment explanation
Indices: 2289618--2289734 Score: 121
Period size: 44 Copynumber: 2.6 Consensus size: 45
2289608 CCCGGGGCAA
* * *
2289618 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCCATACTGATAGT
* * * * * *
2289662 GAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATACTGGTGGT
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCCATACTGATAGT
* *
2289706 GAAGTAGATCGAAGAAAGCAGATCTTATC
1 GAAGTAGATCGAAGATAGCAGATCCTATC
2289735 CCTGTATTTG
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
43 19 0.33
44 29 0.50
45 10 0.17
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (45 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCCATACTGATAGT
Found at i:2291151 original size:3 final size:3
Alignment explanation
Indices: 2291126--2291174 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
2291116 AGTTTTTAGT
* *
2291126 TTA TT- TTA TTA ATA -TA GTTA TTA TTA TTA TTA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
2291170 TTA TT
1 TTA TT
2291175 TTTTTTATAC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
2 4 0.10
3 34 0.85
4 2 0.05
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:2307153 original size:22 final size:22
Alignment explanation
Indices: 2307128--2307174 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
2307118 TAGCCGGATT
2307128 TTCCTTC-CCCCTCCCTTCTCTC
1 TTCCTTCTCCCCTCCC-TCTCTC
* *
2307150 TTCCTTCTCTCTTCCCTCTCTC
1 TTCCTTCTCCCCTCCCTCTCTC
2307172 TTC
1 TTC
2307175 TTTTTTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (22 bp):
TTCCTTCTCCCCTCCCTCTCTC
Found at i:2307155 original size:11 final size:11
Alignment explanation
Indices: 2307141--2307174 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
2307131 CTTCCCCCTC
2307141 CCTTCTCTCTT
1 CCTTCTCTCTT
2307152 CCTTCTCTCTT
1 CCTTCTCTCTT
*
2307163 CCCTCTCTCTT
1 CCTTCTCTCTT
2307174 C
1 C
2307175 TTTTTTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (11 bp):
CCTTCTCTCTT
Found at i:2307696 original size:23 final size:23
Alignment explanation
Indices: 2307652--2307697 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
2307642 ATATTACCAT
*
2307652 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
2307675 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
2307698 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:2307963 original size:19 final size:19
Alignment explanation
Indices: 2307928--2307964 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2307918 ATATATTACC
**
2307928 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
2307947 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
2307965 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:2310165 original size:19 final size:20
Alignment explanation
Indices: 2310125--2310168 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
2310115 GTTTCTTTTG
* *
2310125 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
2310144 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
2310163 GCATTA
1 GCATTA
2310169 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:2314413 original size:86 final size:86
Alignment explanation
Indices: 2314268--2314617 Score: 547
Period size: 86 Copynumber: 4.1 Consensus size: 86
2314258 AGTAAAAATT
* * * * * * *
2314268 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGCTGGTTGAAGTTATCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
2314333 GCATTGACAGTGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
2314354 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
2314419 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
2314440 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
2314505 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * * *
2314526 GAAGACAAACCTTGCCTCTCTCATTTGTAGTAGAGCTGGTTGAAGATATCAGATCTTGCTTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
2314591 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
*
2314613 AAAGA
1 GAAGA
2314618 TGGCAGATTT
Statistics
Matches: 246, Mismatches: 17, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
86 226 0.92
87 20 0.08
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:2314455 original size:42 final size:41
Alignment explanation
Indices: 2314322--2314542 Score: 94
Period size: 42 Copynumber: 5.2 Consensus size: 41
2314312 GTTATCAGAT
2314322 CTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAG-GAAGCAGATCGAAGACAAAC
* * * * * * * * *
2314364 CTTGCC-ACTCT-CGTTTG-TAGTAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGGA-AGCAGATCGAAG--A-CAAAC
2314408 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAG-GAAGCAGATCGAAGACAAAC
* * * * * * * * *
2314450 CTTGCC-ACTCT-CGTTTG-TAGTAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGGA-AGCAGATCGAAG--A-CAAAC
*
2314494 CTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAG-GAAGCAGATCGAAGACAAAC
2314536 CTTGCCT
1 CTTGCCT
2314543 CTCTCATTTG
Statistics
Matches: 122, Mismatches: 37, Indels: 40
0.61 0.19 0.20
Matches are distributed among these distances:
40 2 0.02
41 26 0.21
42 35 0.29
43 4 0.03
44 27 0.22
45 26 0.21
46 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (41 bp):
CTTGCCTTCCTGCATTGACAGGAAGCAGATCGAAGACAAAC
Found at i:2314571 original size:41 final size:41
Alignment explanation
Indices: 2314354--2314571 Score: 97
Period size: 41 Copynumber: 5.1 Consensus size: 41
2314344 GAAGCAGATC
* *
2314354 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTT
1 GAAGACAAACCTTGCCTCTCTCATTTGTAGTAGAGCTGGTT
* * * * * * *
2314395 GAAGATAGCAGATCTTGCCT-TCCTGCA-TTGACAG-CGAAGCAGATC
1 GAAG--A-CAAACCTTGCCTCT-CT-CATTTG-TAGTAG-AGCTGGTT
* *
2314440 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTT
1 GAAGACAAACCTTGCCTCTCTCATTTGTAGTAGAGCTGGTT
* * * * * * * *
2314481 GAAGATAGCAGATCTTGCCT-TCCTGCA-CTGACAG-CGAAGCAGATC
1 GAAG--A-CAAACCTTGCCTCT-CT-CATTTG-TAGTAG-AGCTGGTT
2314526 GAAGACAAACCTTGCCTCTCTCATTTGTAGTAGAGCTGGTT
1 GAAGACAAACCTTGCCTCTCTCATTTGTAGTAGAGCTGGTT
2314567 GAAGA
1 GAAGA
2314572 TATCAGATCT
Statistics
Matches: 121, Mismatches: 36, Indels: 40
0.61 0.18 0.20
Matches are distributed among these distances:
41 30 0.25
42 30 0.25
43 8 0.07
44 29 0.24
45 24 0.20
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (41 bp):
GAAGACAAACCTTGCCTCTCTCATTTGTAGTAGAGCTGGTT
Found at i:2314725 original size:95 final size:95
Alignment explanation
Indices: 2314608--2315088 Score: 838
Period size: 95 Copynumber: 5.0 Consensus size: 95
2314598 GCAGCGAAGC
*
2314608 AGATCAAAGATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
2314673 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
2314703 AGATCGAATATGGCAGATTTTACCTCCCTGACTACAGGGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
2314768 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
*
2314798 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCTGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
2314863 CTCCCTGCATCTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
2314893 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
2314958 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
**
2314988 AGATCAAAGATGGCAGATTTTACCTCTATGTGACTACA-TGGGAGTACATTGAAGCCGATAACTC
1 AGATCAAAGATGGCAGATTTTACCTC--CCTGACTACAGT-GGAGTACATTGAAGCCGATAACTC
2315052 TATCTCCCTGTATTTGGCAGTGGAATAGATTGA
63 TATCTCCCTGTATTTGGCAGTGGAATAGATTGA
2315085 AGAT
1 AGAT
2315089 TGCAGATCTT
Statistics
Matches: 368, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
95 298 0.81
96 1 0.00
97 69 0.19
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:2314847 original size:50 final size:50
Alignment explanation
Indices: 2314782--2314944 Score: 162
Period size: 50 Copynumber: 3.4 Consensus size: 50
2314772 CTGCATTTGG
*
2314782 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
1 CAGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
* * * * * *
2314832 CAGTGGAGTACATTGAAG--C--TGAT---A-ACTCTATCTCCCTGCATCTGG
1 CAGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-A
*
2314877 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
1 CAGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
*
2314927 CAGTGGAGTACATTGAAG
1 CAGTGGAATACATTGAAG
2314945 CCGATAACTC
Statistics
Matches: 86, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
42 11 0.13
43 2 0.02
44 2 0.02
45 16 0.19
46 3 0.03
47 1 0.01
48 1 0.01
49 3 0.03
50 32 0.37
51 2 0.02
52 2 0.02
53 11 0.13
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (50 bp):
CAGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
Found at i:2315438 original size:132 final size:132
Alignment explanation
Indices: 2315201--2316007 Score: 1301
Period size: 132 Copynumber: 6.1 Consensus size: 132
2315191 CCCGGGGCAA
* * * * * *
2315201 GAAGTAGATCAAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGACGCAGA
2315266 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
2315331 GT
131 GT
**
2315333 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGACGCAGA
*
2315398 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
2315463 GT
131 GT
*
2315465 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGACGCAGA
*
2315530 TCTTGTTTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
2315595 GT
131 GT
* * * * * *
2315597 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGACGCAGA
*
2315662 TCTTGTCTTCCCATATTGGTGGCGAACTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
2315727 GT
131 GT
* * * * * *
2315729 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGACGCAGA
*
2315794 TCTTGTCTTCTCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
2315859 GT
131 GT
**
2315861 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGACGCAGA
* ** * *
2315926 TCTTGTCTTCCCATACTGGTGGTAAAGTAGATCGAAGAAAGTAGATCTTGTC-TCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
*
2315990 AT
131 GT
*
2315992 GAAGTAGATTGAAGAT
1 GAAGTAGATCGAAGAT
2316008 TACAGATCTT
Statistics
Matches: 636, Mismatches: 39, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
131 28 0.04
132 608 0.96
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGACGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:2316899 original size:11 final size:11
Alignment explanation
Indices: 2316883--2316912 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
2316873 TTCCCCCCTC
2316883 CCTTCTCTCTT
1 CCTTCTCTCTT
2316894 CCTTCTCTCTT
1 CCTTCTCTCTT
*
2316905 CCCTCTCT
1 CCTTCTCT
2316913 GTTCTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (11 bp):
CCTTCTCTCTT
Found at i:2317440 original size:23 final size:23
Alignment explanation
Indices: 2317396--2317441 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
2317386 ATATTACCAT
*
2317396 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
2317419 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
2317442 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:2317688 original size:19 final size:19
Alignment explanation
Indices: 2317666--2317702 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2317656 TATATGCATA
2317666 TATTACCTAAATATTTTAG
1 TATTACCTAAATATTTTAG
**
2317685 TATTATGTAAATATTTTA
1 TATTACCTAAATATTTTA
2317703 ACATTATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (19 bp):
TATTACCTAAATATTTTAG
Found at i:2317708 original size:19 final size:19
Alignment explanation
Indices: 2317673--2317709 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2317663 ATATATTACC
**
2317673 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
2317692 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
2317710 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:2319074 original size:32 final size:32
Alignment explanation
Indices: 2319038--2319100 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
2319028 TTAATTTTTT
* *
2319038 AATTAAATTTAATTCTCAATCTTTTAAAAAAG
1 AATTAAATTTAACTATCAATCTTTTAAAAAAG
*
2319070 AATTAAATTTAACTATTAATCTTTTAAAAAA
1 AATTAAATTTAACTATCAATCTTTTAAAAAA
2319101 AAGTCAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (32 bp):
AATTAAATTTAACTATCAATCTTTTAAAAAAG
Found at i:2322201 original size:78 final size:77
Alignment explanation
Indices: 2322072--2322448 Score: 257
Period size: 78 Copynumber: 4.9 Consensus size: 77
2322062 ATTCAGCCGG
* * * * *
2322072 TTATGGATAGGATTCAGTCCTAAAGGCACTTT-TATTTTGCGAGAACGAGTGTGCTTAGGAATCG
1 TTATGGATAGGATCCAGTCCT-ACGGCA-TTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCC
*
2322136 TTTCTCTTGGAGAA
64 TTTCTCTTGAAGAA
* * *
2322150 TTATGGATAGGATCC-GATCCTGACGGCATTTCTATCTTGCGAGAACGAGTGTGAATAAGAAACC
1 TTATGGATAGGATCCAG-TCCT-ACGGCATTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCC
* *
2322214 TTTCTTTTGAAGGA
64 TTTCTCTTGAAGAA
* * ** * *
2322228 TCATGGATAGAATCCAGT-C-ACGGCACATCTAACTTGCGAGAACAAGTGTGCATAGGAATCCTT
1 TTATGGATAGGATCCAGTCCTACGGCATTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCCTT
* *
2322291 TCTCTCGAAGGA
66 TCTCTTGAAGAA
* * * * * * * * * ** *
2322303 TTACGGATTGGATTCACTCTTGATGGCACTTCTATCTTACAAGAATAAGTGTGAATAGGAA--CT
1 TTATGGATAGGATCCAGTCCT-ACGGCATTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCCT
* * *
2322366 ATT-TTTTCAACGGA
65 -TTCTCTTGAA-GAA
* * * * * *
2322380 TTATGGATAGTATCCAGTCCTGACGACACTTCTATCTTGTGAGAATGAGTGTGAATAGGAA-CCA
1 TTATGGATAGGATCCAGTCCT-ACGGCATTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCC-
2322444 TTTCT
64 TTTCT
2322449 TTTTCCAGAT
Statistics
Matches: 236, Mismatches: 52, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
75 59 0.25
76 6 0.03
77 59 0.25
78 109 0.46
79 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (77 bp):
TTATGGATAGGATCCAGTCCTACGGCATTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCCTT
TCTCTTGAAGAA
Found at i:2322291 original size:75 final size:77
Alignment explanation
Indices: 2322108--2322303 Score: 218
Period size: 75 Copynumber: 2.6 Consensus size: 77
2322098 CACTTTTATT
* * * * * *
2322108 TTGCGAGAACGAGTGTGCTTAGGAATCGTTTCTCTTGGAGAATTATGGATAGGATCCGATCCTGA
1 TTGCGAGAACGAGTGTGCATAGGAATCCTTTCTCTTGAAGGATCATGGATAGAATCCGATCC-GA
** *
2322173 CGGCATTTCTATC
65 CGGCACATCTAAC
* * * *
2322186 TTGCGAGAACGAGTGTGAATAAGAAACCTTTCTTTTGAAGGATCATGGATAGAATCC-AGT-C-A
1 TTGCGAGAACGAGTGTGCATAGGAATCCTTTCTCTTGAAGGATCATGGATAGAATCCGA-TCCGA
2322248 CGGCACATCTAAC
65 CGGCACATCTAAC
* *
2322261 TTGCGAGAACAAGTGTGCATAGGAATCCTTTCTCTCGAAGGAT
1 TTGCGAGAACGAGTGTGCATAGGAATCCTTTCTCTTGAAGGAT
2322304 TACGGATTGG
Statistics
Matches: 98, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
75 48 0.49
77 2 0.02
78 48 0.49
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (77 bp):
TTGCGAGAACGAGTGTGCATAGGAATCCTTTCTCTTGAAGGATCATGGATAGAATCCGATCCGAC
GGCACATCTAAC
Found at i:2323890 original size:16 final size:17
Alignment explanation
Indices: 2323862--2323894 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
2323852 AAATAGATTT
2323862 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
2323879 TTAATT-AAAATTTTAA
1 TTAATTAAAAATTTTAA
2323895 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:2324456 original size:22 final size:22
Alignment explanation
Indices: 2324415--2324456 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
2324405 CCAATAGGCT
* *
2324415 CAAATCCAAAAAAGTCAAAAGC
1 CAAACCCAAAAAAGTAAAAAGC
*
2324437 CAAACCCAAAAATGTAAAAA
1 CAAACCCAAAAAAGTAAAAA
2324457 AAATTAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.62, C:0.21, G:0.07, T:0.10
Consensus pattern (22 bp):
CAAACCCAAAAAAGTAAAAAGC
Found at i:2331228 original size:15 final size:18
Alignment explanation
Indices: 2331203--2331240 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
2331193 TAGTGAAAAG
2331203 AAAATTGGAAA-GATA-A
1 AAAATTGGAAAGGATAGA
2331219 AAAATT-GAAAGGATAGA
1 AAAATTGGAAAGGATAGA
2331236 AAAAT
1 AAAAT
2331241 AAAATGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 4 0.20
16 10 0.50
17 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.18, T:0.18
Consensus pattern (18 bp):
AAAATTGGAAAGGATAGA
Found at i:2332136 original size:55 final size:55
Alignment explanation
Indices: 2332028--2332402 Score: 417
Period size: 55 Copynumber: 6.7 Consensus size: 55
2332018 TAGACATGCT
** * * *
2332028 ACATAACAATTTATTTAAACATATAAACAACCGATTCAAAAAAAGCAGCATTCCA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
* * * * * *
2332083 ATATAACAATCAATTTGAACATATAAACAATCAATTTAAAAGAAGTAGTATTCCA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
* * * *
2332138 ACATAACAATCGACTTAAATATATAAACAATCGATTCAAAAGAAACAATATTCCA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
* * *
2332193 ACATAACAATCGATTTAAACATATAAATAATCTATTCAAAAGAAAAAGAAGCAATATTCCA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTC------AAAAGAAGCAGTATTCCA
* * *
2332254 CCATAACAATTGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCTA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
* * * * * *
2332309 ACATGACAATCAATTTAAACATATAAACAATCGACTCAAACGAAGCAATATTCTA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
* * * *
2332364 GCATGACAATCGATTTAAACATAAAAATAATCGATTCAA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAA
2332403 TCCAAAATCA
Statistics
Matches: 271, Mismatches: 43, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
55 221 0.82
61 50 0.18
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.25
Consensus pattern (55 bp):
ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
Found at i:2332335 original size:171 final size:167
Alignment explanation
Indices: 2332028--2332402 Score: 466
Period size: 171 Copynumber: 2.2 Consensus size: 167
2332018 TAGACATGCT
** * * * *
2332028 ACATAACAATTTATTTAAACATATAAACAACCGATTC--AAAAAAAGCAGCATTCCAATATAACA
1 ACATAACAATCGATTTAAACATATAAATAATCGATTCAAAAAAAAAGAAGCATTCCAACATAACA
* * * *
2332091 ATCAATTTGAACATATAAACAATCAATTTAAAAGAAGTAGTATTCCAACATAACAATCGACTTAA
66 ATCAATTTAAACATATAAACAATCAATTCAAAAGAAGCAGTATTCCAACATAACAATCAACTTAA
* *
2332156 ATATATAAACAATCGATTCAAAAGAAACAATATTCCA
131 ACATATAAACAATCGACTCAAAAGAAACAATATTCCA
* *
2332193 ACATAACAATCGATTTAAACATATAAATAATCTATTCAAAAGAAAAAGAAGCAATATTCCACCAT
1 ACATAACAATCGATTTAAACATATAAATAATCGATTCAAAA-AAAAAGAAGC---ATTCCAACAT
** * * * *
2332258 AACAATTGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCTAACATGACAATCAAT
62 AACAATCAATTTAAACATATAAACAATCAATTCAAAAGAAGCAGTATTCCAACATAACAATCAAC
* * *
2332323 TTAAACATATAAACAATCGACTCAAACGAAGCAATATTCTA
127 TTAAACATATAAACAATCGACTCAAAAGAAACAATATTCCA
* * *
2332364 GCATGACAATCGATTTAAACATAAAAATAATCGATTCAA
1 ACATAACAATCGATTTAAACATATAAATAATCGATTCAA
2332403 TCCAAAATCA
Statistics
Matches: 177, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
165 32 0.18
167 2 0.01
168 9 0.05
171 134 0.76
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.25
Consensus pattern (167 bp):
ACATAACAATCGATTTAAACATATAAATAATCGATTCAAAAAAAAAGAAGCATTCCAACATAACA
ATCAATTTAAACATATAAACAATCAATTCAAAAGAAGCAGTATTCCAACATAACAATCAACTTAA
ACATATAAACAATCGACTCAAAAGAAACAATATTCCA
Found at i:2332622 original size:20 final size:20
Alignment explanation
Indices: 2332597--2332635 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
2332587 TTAATGATCA
*
2332597 AATTTGTATTGAATAATAAT
1 AATTTGTATTGAACAATAAT
2332617 AATTTGTATTGAACAATAA
1 AATTTGTATTGAACAATAA
2332636 CACACAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (20 bp):
AATTTGTATTGAACAATAAT
Found at i:2333338 original size:5 final size:5
Alignment explanation
Indices: 2333328--2333352 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
2333318 GGGAGAGTAG
2333328 AATTA AATTA AATTA AATTA AATTA
1 AATTA AATTA AATTA AATTA AATTA
2333353 TTATTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTA
Found at i:2333405 original size:29 final size:29
Alignment explanation
Indices: 2333342--2333407 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
2333332 AAATTAAATT
* *
2333342 AAATTAAATTATTATTTTTATTATTAAAT
1 AAATTAAATTATTATTTATATTATTAAAA
* *
2333371 AGATTAATTTAATT-TTTATATTATTAAAA
1 AAATTAAATT-ATTATTTATATTATTAAAA
2333400 AAATTAAA
1 AAATTAAA
2333408 AAAATCTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (29 bp):
AAATTAAATTATTATTTATATTATTAAAA
Found at i:2334993 original size:13 final size:13
Alignment explanation
Indices: 2334941--2335004 Score: 65
Period size: 13 Copynumber: 4.9 Consensus size: 13
2334931 ACACCTAAAA
*
2334941 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
2334954 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
* * *
2334967 TTTTCCACATCAC
1 TTTTCAAAAGCAC
*
2334980 TTTTTAAAAGCAC
1 TTTTCAAAAGCAC
2334993 TTTTCAAAAGCA
1 TTTTCAAAAGCA
2335005 TTGCCAAACA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 40 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:2337434 original size:12 final size:12
Alignment explanation
Indices: 2337417--2337446 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
2337407 TAAAAAAATC
2337417 TCACCTTAGACA
1 TCACCTTAGACA
2337429 TCACCTTAGACA
1 TCACCTTAGACA
2337441 TCACCT
1 TCACCT
2337447 AAGATAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.37, G:0.07, T:0.27
Consensus pattern (12 bp):
TCACCTTAGACA
Found at i:2339406 original size:13 final size:13
Alignment explanation
Indices: 2339388--2339414 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2339378 ATCCATTGAT
2339388 GTACATAAAAGTA
1 GTACATAAAAGTA
2339401 GTACATAAAAGTA
1 GTACATAAAAGTA
2339414 G
1 G
2339415 ATAACTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (13 bp):
GTACATAAAAGTA
Found at i:2345101 original size:20 final size:21
Alignment explanation
Indices: 2345078--2345124 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
2345068 GACAAAAAAA
**
2345078 TTATATTTTTATGTATTT-AT
1 TTATATTTAAATGTATTTAAT
*
2345098 TTAT-TTTAAATGTTTTTAAT
1 TTATATTTAAATGTATTTAAT
2345118 TTATATT
1 TTATATT
2345125 CGTCACATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 10 0.45
20 10 0.45
21 2 0.09
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (21 bp):
TTATATTTAAATGTATTTAAT
Found at i:2361817 original size:87 final size:88
Alignment explanation
Indices: 2361376--2362055 Score: 900
Period size: 87 Copynumber: 7.9 Consensus size: 88
2361366 TGTAACCTTT
* * ** * * *
2361376 AACCAGCTTCAT-GCAACCGATGGAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGCTGTTAATGC
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
** *
2361438 AGGAAGGCAAGATCTGCT-TCTTT
65 AGGAAGGCAAGATCTTTTGTCTTC
* * ** * *
2361461 AACTAGCTCCA-CTACAATCGATGGATGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATG
1 AACCAGCTCCATC-ACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATG
* ** *
2361523 TAGGAAGGCAAGATCTGCT-TCTTT
64 CAGGAAGGCAAGATCTTTTGTCTTC
* * *
2361547 AACCAGCTCCA-CTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATG-
1 AACCAGCTCCATC-ACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
2361610 AGGAAGGCAA-ATC-TTTGTCTTC
65 AGGAAGGCAAGATCTTTTGTCTTC
*
2361632 AACCAGCTCTATCACAACCG-AAGAGGCAAGG-TT-TGTCTTCGATCTGCTTCGCTGTCAATGC-
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
*
2361693 GAAAGGCAAGATCTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
*
2361716 AACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
*
2361781 GAAAGGCAAGATCTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
*
2361804 AACCAGCT-CATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCACTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
*
2361868 GAAAGGCAAGATCTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
2361891 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
2361956 GGAAGGCAAGATCTTTTGTCTTTC
66 GGAAGGCAAGATCTTTTGTC-TTC
2361980 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCT-TCAAT---
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
2362041 GGAA-GCAAGATCTTT
66 GGAAGGCAAGATCTTT
2362056 CTTACCACTC
Statistics
Matches: 552, Mismatches: 28, Indels: 31
0.90 0.05 0.05
Matches are distributed among these distances:
82 33 0.06
83 5 0.01
84 51 0.09
85 53 0.10
86 108 0.20
87 133 0.24
88 110 0.20
89 59 0.11
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (88 bp):
AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
GGAAGGCAAGATCTTTTGTCTTC
Found at i:2361907 original size:175 final size:175
Alignment explanation
Indices: 2361376--2362124 Score: 906
Period size: 175 Copynumber: 4.5 Consensus size: 175
2361366 TGTAACCTTT
* * ** * * *
2361376 AACCAGCTTCAT-GCAACCGATGGAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGCTGTTAATGC
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
** * * * ** *
2361438 AGGAAGGCAAGATCTGCT-TCTTTAACTAGCTCCA-CTACAATCGATGGATGCAAGGCTTTGT-T
65 AGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATC-ACAACCGAAAGAGGCAAGG-TTTGTGT
* * * ** *
2361500 -TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTGCT-TCTTT
128 CTTCGATCTGCTTCGCTGTCAATG-CGAAAGGCAAGATCTTTTGTCTTC
* * *
2361547 AACCAGCTCCA-CTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATG-
1 AACCAGCTCCATC-ACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
*
2361610 AGGAAGGCAA-ATC-TTTGTCTTCAACCAGCTCTATCACAACCG-AAGAGGCAAGG-TT-TGTCT
65 AGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCT
2361670 TCGATCTGCTTCGCTGTCAATGCGAAAGGCAAGATCTTTTGTCTTC
130 TCGATCTGCTTCGCTGTCAATGCGAAAGGCAAGATCTTTTGTCTTC
*
2361716 AACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
*
2361781 GAAAGGCAAGATCTTTTGTCTTCAACCAGCT-CATCACAACCGAAAGAGGCAAGGTTTGTGTCTT
66 GGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTT
*
2361845 CGATCTGCTTCACTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTC
131 CGATCTGCTTCGCTGTCAATGC-GAAAGGCAAGATCTTTTGTCTTC
2361891 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
2361956 GGAAGGCAAGATCTTTTGTCTTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCT
66 GGAAGGCAAGATCTTTTGTC-TTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCT
2362021 TCGATCTGCTTCGCT-TCAATG-G-AA-GCAAGATC--TT-TCTT-
130 TCGATCTGCTTCGCTGTCAATGCGAAAGGCAAGATCTTTTGTCTTC
* *
2362059 -ACCA----C-TCAC-ACCG--AGAGGC-AGGTTT-TGTCTTCGA-CTGCTTCACT-ACAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
2362111 GGAAGGCAAGATCT
66 GGAAGGCAAGATCT
2362125 GTAACTTCAT
Statistics
Matches: 523, Mismatches: 36, Indels: 54
0.85 0.06 0.09
Matches are distributed among these distances:
155 21 0.04
156 9 0.02
157 9 0.02
158 6 0.01
159 6 0.01
161 4 0.01
162 4 0.01
163 1 0.00
167 5 0.01
168 17 0.03
169 87 0.17
170 21 0.04
171 50 0.10
172 64 0.12
173 22 0.04
174 28 0.05
175 106 0.20
176 17 0.03
177 46 0.09
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (175 bp):
AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
GGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTT
CGATCTGCTTCGCTGTCAATGCGAAAGGCAAGATCTTTTGTCTTC
Found at i:2364293 original size:7 final size:8
Alignment explanation
Indices: 2364268--2364297 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
2364258 CTATTTTGAC
2364268 TTTGATTTT
1 TTTGA-TTT
2364277 TTTGATTT
1 TTTGATTT
2364285 TTTGATTT
1 TTTGATTT
2364293 TTTGA
1 TTTGA
2364298 ATTCATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (8 bp):
TTTGATTT
Found at i:2366819 original size:19 final size:20
Alignment explanation
Indices: 2366790--2366838 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
2366780 CACTTCGTGA
* *
2366790 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
2366809 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
2366829 AAATG-AATGC
1 AAATGTAATGC
2366839 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:2368356 original size:109 final size:109
Alignment explanation
Indices: 2368220--2368421 Score: 352
Period size: 109 Copynumber: 1.9 Consensus size: 109
2368210 TAAATTCAAT
*
2368220 AGGATATTTGACAATTTGGTTAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
2368285 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
* *
2368329 AGGATATTT-AGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTTGA-CAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
2368393 ATTTCCAAACGCAAAATATTGCCTTATTT
65 ATTTCCAAACGCAAAACATTGCCTTATTT
2368422 GGAAATATTT
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
108 1 0.01
109 87 0.99
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (109 bp):
AGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
Found at i:2368794 original size:42 final size:41
Alignment explanation
Indices: 2368725--2368820 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 41
2368715 AATATGAAAG
* *
2368725 ATATATATGTAT-TAGGAGATATAAAAATATAAATATCTAC
1 ATATATATGTATATAGAAGATATAAAAATATAAATATATAC
* * * * *
2368765 ATGTATATGTATATAGAAGTTATAAAAAATTTAAGTATATAT
1 ATATATATGTATATAGAAGATAT-AAAAATATAAATATATAC
2368807 ATATATATGTATAT
1 ATATATATGTATAT
2368821 TCGTGAGAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 11 0.24
41 8 0.17
42 27 0.59
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.40
Consensus pattern (41 bp):
ATATATATGTATATAGAAGATATAAAAATATAAATATATAC
Found at i:2369041 original size:24 final size:22
Alignment explanation
Indices: 2369014--2369064 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
2369004 ATATATGCAC
*
2369014 ATATATATATTAAGATATATGG
1 ATATATATAATAAGATATATGG
*
2369036 ATATATATAATAAGATATATAG
1 ATATATATAATAAGATATATGG
2369058 ATATATA
1 ATATATA
2369065 ACTAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (22 bp):
ATATATATAATAAGATATATGG
Found at i:2369065 original size:20 final size:21
Alignment explanation
Indices: 2369016--2369074 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
2369006 ATATGCACAT
* *
2369016 ATATATATTAAGATATATGGAT
1 ATATATAATAAGATATAT-GAG
2369038 ATATATAATAAGATATAT-AG
1 ATATATAATAAGATATATGAG
2369058 ATATATAACTAA-ATATA
1 ATATATAA-TAAGATATA
2369075 ATATTAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.41
21 3 0.09
22 17 0.50
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (21 bp):
ATATATAATAAGATATATGAG
Found at i:2378034 original size:34 final size:34
Alignment explanation
Indices: 2377988--2378054 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
2377978 GTGTGAGTGT
* **
2377988 GGGTGTTTATATATAGTTTATGTATATATAATGC
1 GGGTGTTCATATATAACTTATGTATATATAATGC
2378022 GGGTGTTCATATATAACTTATGTATATATAATG
1 GGGTGTTCATATATAACTTATGTATATATAATG
2378055 AGAGAGTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.31, C:0.04, G:0.19, T:0.45
Consensus pattern (34 bp):
GGGTGTTCATATATAACTTATGTATATATAATGC
Found at i:2382355 original size:27 final size:28
Alignment explanation
Indices: 2382308--2382364 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 28
2382298 TGTAATTTAA
**
2382308 ATTAAGTTTTAATTAAGTATTGTTTATT
1 ATTAAGTTTTAATTAAGTATTAATTATT
*
2382336 ATTAAGTTTT-A-TATGATATTAATTATT
1 ATTAAGTTTTAATTAAG-TATTAATTATT
2382363 AT
1 AT
2382365 AAAATATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 3 0.12
27 12 0.48
28 10 0.40
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (28 bp):
ATTAAGTTTTAATTAAGTATTAATTATT
Found at i:2382371 original size:17 final size:18
Alignment explanation
Indices: 2382351--2382388 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
2382341 GTTTTATATG
*
2382351 ATATTA-ATTATTATAAA
1 ATATTATATTATTAGAAA
*
2382368 ATATTATTTTATTAGAAA
1 ATATTATATTATTAGAAA
2382386 ATA
1 ATA
2382389 AATTTCCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
ATATTATATTATTAGAAA
Found at i:2387134 original size:29 final size:30
Alignment explanation
Indices: 2387101--2387182 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 30
2387091 GCAATTAATT
* *
2387101 AATTATTTTTAAATTTAAAAAATT-TTAAA
1 AATTATTTTAAAAATTAAAAAATTATTAAA
*
2387130 AATTATTTTAAAAATTAAAAAGTTATTAAA
1 AATTATTTTAAAAATTAAAAAATTATTAAA
* *
2387160 AAGTA---TAAATATTAAAAAATTAT
1 AATTATTTTAAAAATTAAAAAATTAT
2387183 AAATATAAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 16 0.35
29 21 0.46
30 9 0.20
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (30 bp):
AATTATTTTAAAAATTAAAAAATTATTAAA
Found at i:2387139 original size:12 final size:12
Alignment explanation
Indices: 2387114--2387146 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
2387104 TATTTTTAAA
2387114 TTTAAAAA--AT
1 TTTAAAAATTAT
2387124 TTTAAAAATTAT
1 TTTAAAAATTAT
2387136 TTTAAAAATTA
1 TTTAAAAATTA
2387147 AAAAGTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
12 13 0.62
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TTTAAAAATTAT
Found at i:2387174 original size:16 final size:17
Alignment explanation
Indices: 2387153--2387188 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
2387143 ATTAAAAAGT
2387153 TATT-AAAAAGTATAAA
1 TATTAAAAAAGTATAAA
*
2387169 TATTAAAAAATTATAAA
1 TATTAAAAAAGTATAAA
2387186 TAT
1 TAT
2387189 AAGATGTCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (17 bp):
TATTAAAAAAGTATAAA
Found at i:2388321 original size:38 final size:40
Alignment explanation
Indices: 2388252--2388339 Score: 117
Period size: 38 Copynumber: 2.2 Consensus size: 40
2388242 TAAAAAGTAT
* *
2388252 TTATATTAAAAATACTACCATAAATATAATAAATATTTTA
1 TTATATTAAAAAAACTACAATAAATATAATAAATATTTTA
* *
2388292 TTATATTAAAAAAAC-A-AATAAATGTAATAAGTATTTTA
1 TTATATTAAAAAAACTACAATAAATATAATAAATATTTTA
*
2388330 TTGTATTAAA
1 TTATATTAAA
2388340 TATAATTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
38 28 0.65
39 1 0.02
40 14 0.33
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (40 bp):
TTATATTAAAAAAACTACAATAAATATAATAAATATTTTA
Found at i:2388511 original size:17 final size:16
Alignment explanation
Indices: 2388484--2388515 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
2388474 TTTTTTAACA
2388484 TATAAAATTAATATAT
1 TATAAAATTAATATAT
2388500 TATAAGAATTAATATA
1 TATAA-AATTAATATA
2388516 ATATTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (16 bp):
TATAAAATTAATATAT
Found at i:2389275 original size:24 final size:24
Alignment explanation
Indices: 2389243--2389298 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
2389233 CCAGAGATTA
2389243 AAATGAAGTTGTTGATTGTTTGGC
1 AAATGAAGTTGTTGATTGTTTGGC
2389267 AAATGAAGTTGTTGATTGTTTGGC
1 AAATGAAGTTGTTGATTGTTTGGC
*
2389291 AAAAGAAG
1 AAATGAAG
2389299 CGTTGCCTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.32, C:0.04, G:0.29, T:0.36
Consensus pattern (24 bp):
AAATGAAGTTGTTGATTGTTTGGC
Found at i:2391251 original size:10 final size:11
Alignment explanation
Indices: 2391231--2391255 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
2391221 TATTATTCAA
2391231 TTTTTGTTTTT
1 TTTTTGTTTTT
2391242 TTTTTGTTTTT
1 TTTTTGTTTTT
2391253 TTT
1 TTT
2391256 ATAATTGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTTTGTTTTT
Found at i:2394504 original size:12 final size:12
Alignment explanation
Indices: 2394473--2394506 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
2394463 GGAAGGTGTG
*
2394473 GAGGCAGAGGCA
1 GAGGCAGCGGCA
2394485 GAGGCAGCGGCA
1 GAGGCAGCGGCA
*
2394497 GCGGCAGCGG
1 GAGGCAGCGG
2394507 TTTGTTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.53, T:0.00
Consensus pattern (12 bp):
GAGGCAGCGGCA
Found at i:2396980 original size:31 final size:31
Alignment explanation
Indices: 2396942--2397004 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
2396932 CCAACTTTAG
2396942 CCTAAAAATAAATGAAGAATGCTTGTGCAGT
1 CCTAAAAATAAATGAAGAATGCTTGTGCAGT
2396973 CCTAAAAATAAATGAAGAATGCTTGTGCAGT
1 CCTAAAAATAAATGAAGAATGCTTGTGCAGT
2397004 C
1 C
2397005 AGACTGATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.25
Consensus pattern (31 bp):
CCTAAAAATAAATGAAGAATGCTTGTGCAGT
Found at i:2398830 original size:14 final size:13
Alignment explanation
Indices: 2398811--2398849 Score: 55
Period size: 11 Copynumber: 3.1 Consensus size: 13
2398801 GATGTTTGGC
2398811 AAAAAGAAAGGAAA
1 AAAAAG-AAGGAAA
2398825 AAAAAGAA--AAA
1 AAAAAGAAGGAAA
2398836 AAAAAGAAGGAAA
1 AAAAAGAAGGAAA
2398849 A
1 A
2398850 TATACAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
11 11 0.48
13 6 0.26
14 6 0.26
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAAAGAAGGAAA
Found at i:2399923 original size:40 final size:41
Alignment explanation
Indices: 2399851--2399941 Score: 114
Period size: 40 Copynumber: 2.2 Consensus size: 41
2399841 AAAAAAATAT
* *
2399851 TTATATTAAAAAACACTACCATAAATACAATAAGTATTTTA
1 TTATATTAAAAAACACTACAATAAATACAATAAATATTTTA
**
2399892 TTATATTAAAAGAACAC-A-AATAAATGTAATAAATATTTTA
1 TTATATTAAAA-AACACTACAATAAATACAATAAATATTTTA
*
2399932 TTGTATTAAA
1 TTATATTAAA
2399942 TATAATTTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
40 27 0.61
41 12 0.27
42 5 0.11
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.36
Consensus pattern (41 bp):
TTATATTAAAAAACACTACAATAAATACAATAAATATTTTA
Found at i:2406578 original size:30 final size:30
Alignment explanation
Indices: 2406518--2406578 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
2406508 TAATCCCTTA
* * **
2406518 TTTTTATTTTAAGAAATGTAATTTCTTTAT
1 TTTTTAATTTAAGAAATATAATTTAATTAT
2406548 TTTTTAATTTAA-AAATATAAGTTTAATTAT
1 TTTTTAATTTAAGAAATATAA-TTTAATTAT
2406578 T
1 T
2406579 AACCTCGTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (30 bp):
TTTTTAATTTAAGAAATATAATTTAATTAT
Found at i:2408197 original size:120 final size:122
Alignment explanation
Indices: 2408043--2408333 Score: 462
Period size: 120 Copynumber: 2.4 Consensus size: 122
2408033 TAGTATGATG
* **
2408043 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
2408108 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
2408164 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
* *
2408227 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
2408285 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
2408334 ATATGATTAA
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
119 2 0.01
120 106 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:2408230 original size:59 final size:58
Alignment explanation
Indices: 2408050--2408333 Score: 150
Period size: 59 Copynumber: 4.7 Consensus size: 58
2408040 ATGATAAATT
* ** * *
2408050 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGTATC
* * * * * * * *
2408109 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTAA-ATT-A-TATTTTA-TAGTATC
2408170 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGTATC
* * ** * * * *
2408229 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-T-TATTATA-AAT
1 ATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATATTTTATAGTAT
*
2408291 T
58 C
*
2408292 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAA
2408334 ATATGATTAA
Statistics
Matches: 167, Mismatches: 37, Indels: 45
0.67 0.15 0.18
Matches are distributed among these distances:
56 12 0.07
57 6 0.04
58 13 0.08
59 39 0.23
60 11 0.07
61 30 0.18
62 15 0.09
63 12 0.07
64 7 0.04
65 6 0.04
66 16 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGTATC
Found at i:2408312 original size:18 final size:19
Alignment explanation
Indices: 2408277--2408313 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
2408267 ATTATTAAGA
2408277 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
2408296 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
2408314 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:2408583 original size:16 final size:16
Alignment explanation
Indices: 2408549--2408601 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
2408539 GATTAGCTAT
2408549 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
2408566 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
2408582 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
2408598 TACA
1 TACA
2408602 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 24 0.67
17 12 0.33
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:2414725 original size:8 final size:7
Alignment explanation
Indices: 2414692--2414723 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
2414682 TAGGATTTTA
2414692 TTTAGATT
1 TTTA-ATT
2414700 TTTAATT
1 TTTAATT
2414707 TTTAATT
1 TTTAATT
2414714 TTTAATT
1 TTTAATT
2414721 TTT
1 TTT
2414724 TATATAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (7 bp):
TTTAATT
Found at i:2415080 original size:29 final size:29
Alignment explanation
Indices: 2415024--2415080 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
2415014 TTAACTTTAT
* * *
2415024 ATTGAATTTTGTTAATTTACTTTTATTTG
1 ATTGAAATTTGTTAATTTAATTTAATTTG
2415053 ATTGAAATTTGTT-ATTTAATTATAATTT
1 ATTGAAATTTGTTAATTTAATT-TAATTT
2415081 AAAATATTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.60
Consensus pattern (29 bp):
ATTGAAATTTGTTAATTTAATTTAATTTG
Found at i:2416224 original size:12 final size:12
Alignment explanation
Indices: 2416209--2416250 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
2416199 TAATTTTTTA
2416209 AAATATAATGAT
1 AAATATAATGAT
*
2416221 AAATATCAA-AAT
1 AAATAT-AATGAT
2416233 AAAGTATAATGAT
1 AAA-TATAATGAT
2416246 AAATA
1 AAATA
2416251 ATTACAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (12 bp):
AAATATAATGAT
Found at i:2416398 original size:21 final size:21
Alignment explanation
Indices: 2416360--2416461 Score: 53
Period size: 21 Copynumber: 4.8 Consensus size: 21
2416350 AAAAATACAT
* *
2416360 TAAAAATTTAAATTTTTAAAAA
1 TAAAAA-TTATATATTTAAAAA
** *
2416382 TAAAAATTATATATTTATTAT
1 TAAAAATTATATATTTAAAAA
** * ** * *
2416403 TAAATTTTATAAAAAT-ACAT
1 TAAAAATTATATATTTAAAAA
* *
2416423 TAAAAATTTAAATTTTTAAAAA
1 TAAAAA-TTATATATTTAAAAA
2416445 TAAAAATTATATATTTA
1 TAAAAATTATATATTTA
2416462 TTATTAAATT
Statistics
Matches: 55, Mismatches: 23, Indels: 5
0.66 0.28 0.06
Matches are distributed among these distances:
20 6 0.11
21 35 0.64
22 14 0.25
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAAAATTATATATTTAAAAA
Found at i:2416405 original size:27 final size:27
Alignment explanation
Indices: 2416375--2416469 Score: 73
Period size: 27 Copynumber: 3.2 Consensus size: 27
2416365 ATTTAAATTT
2416375 TTAAAAATAAAAATTATATATTTATTA
1 TTAAAAATAAAAATTATATATTTATTA
* * * *
2416402 TTAAATTTTATAAAAATACATTAAAAATTTAAATTT
1 TTAAA----A-ATAAA-A-ATTATATATTT--ATTA
2416438 TTAAAAATAAAAATTATATATTTATTA
1 TTAAAAATAAAAATTATATATTTATTA
2416465 TTAAA
1 TTAAA
2416470 TTTTATATTA
Statistics
Matches: 51, Mismatches: 8, Indels: 18
0.66 0.10 0.23
Matches are distributed among these distances:
27 13 0.25
29 9 0.18
30 1 0.02
31 5 0.10
32 5 0.10
33 1 0.02
34 9 0.18
36 8 0.16
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (27 bp):
TTAAAAATAAAAATTATATATTTATTA
Found at i:2416418 original size:63 final size:63
Alignment explanation
Indices: 2416350--2416476 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
2416340 TACCCTAGTA
2416350 AAAAATACATTAAAAATTTAAATTTTTAAAAATAAAAATTATATATTTATTATTAAATTTTAT
1 AAAAATACATTAAAAATTTAAATTTTTAAAAATAAAAATTATATATTTATTATTAAATTTTAT
2416413 AAAAATACATTAAAAATTTAAATTTTTAAAAATAAAAATTATATATTTATTATTAAATTTTAT
1 AAAAATACATTAAAAATTTAAATTTTTAAAAATAAAAATTATATATTTATTATTAAATTTTAT
2416476 A
1 A
2416477 TTATGTCATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (63 bp):
AAAAATACATTAAAAATTTAAATTTTTAAAAATAAAAATTATATATTTATTATTAAATTTTAT
Found at i:2416469 original size:21 final size:21
Alignment explanation
Indices: 2416382--2416469 Score: 61
Period size: 21 Copynumber: 4.2 Consensus size: 21
2416372 TTTTTAAAAA
2416382 TAAAAATTATATATTTATTAT
1 TAAAAATTATATATTTATTAT
** * ** *
2416403 TAAATTTTATAAAAATA-CAT
1 TAAAAATTATATATTTATTAT
* * ** *
2416423 TAAAAATTTAAATTTTTAAAAA
1 TAAAAA-TTATATATTTATTAT
2416445 TAAAAATTATATATTTATTAT
1 TAAAAATTATATATTTATTAT
2416466 TAAA
1 TAAA
2416470 TTTTATATTA
Statistics
Matches: 45, Mismatches: 20, Indels: 4
0.65 0.29 0.06
Matches are distributed among these distances:
20 6 0.13
21 32 0.71
22 7 0.16
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (21 bp):
TAAAAATTATATATTTATTAT
Found at i:2423117 original size:20 final size:21
Alignment explanation
Indices: 2423092--2423133 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
2423082 AGTTAATTTT
*
2423092 TTTATTTTA-TTTTACTATTA
1 TTTATTATATTTTTACTATTA
2423112 TTTATTATATTTTTACTATTA
1 TTTATTATATTTTTACTATTA
2423133 T
1 T
2423134 AGTTATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTATTATATTTTTACTATTA
Found at i:2423131 original size:18 final size:19
Alignment explanation
Indices: 2423101--2423145 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
2423091 TTTTATTTTA
2423101 TTTTACTATTATTTA-TTATAT
1 TTTTACTATTA--TAGTTAT-T
2423122 TTTTACTATTATAGTTATT
1 TTTTACTATTATAGTTATT
2423141 TTTTA
1 TTTTA
2423146 TTTTCATTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.35
20 4 0.17
21 11 0.48
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTACTATTATAGTTATT
Found at i:2423166 original size:27 final size:26
Alignment explanation
Indices: 2423107--2423167 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
2423097 TTTATTTTAC
2423107 TATTATTTATTATATTTTTACTATTA
1 TATTATTTATTATATTTTTACTATTA
*
2423133 TAGTTATTTTTTAT-TTTCATTACTACTT-
1 TA-TTATTTATTATATTT--TTACTA-TTA
2423161 TATTATT
1 TATTATT
2423168 ATTGTAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
26 5 0.17
27 15 0.50
28 8 0.27
29 2 0.07
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.66
Consensus pattern (26 bp):
TATTATTTATTATATTTTTACTATTA
Found at i:2423279 original size:3 final size:3
Alignment explanation
Indices: 2423260--2423316 Score: 55
Period size: 3 Copynumber: 19.3 Consensus size: 3
2423250 TTTTGAATTG
* * *
2423260 TTA TCA TTA TTA CTA TTA TTA -TA TTA -TA TTTA TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
*
2423304 TTA TTA CTA TTA T
1 TTA TTA TTA TTA T
2423317 ATTTTAATCT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
2 4 0.09
3 37 0.86
4 2 0.05
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:2423279 original size:9 final size:9
Alignment explanation
Indices: 2423265--2423316 Score: 61
Period size: 9 Copynumber: 5.6 Consensus size: 9
2423255 AATTGTTATC
2423265 ATTATTACT
1 ATTATTACT
2423274 ATTATTA-T
1 ATTATTACT
*
2423282 ATTATATTTATT
1 A-T-TA-TTACT
2423294 ATTATTACT
1 ATTATTACT
2423303 ATTATTACT
1 ATTATTACT
2423312 ATTAT
1 ATTAT
2423317 ATTTTAATCT
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
8 2 0.05
9 26 0.68
10 4 0.11
11 4 0.11
12 2 0.05
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.60
Consensus pattern (9 bp):
ATTATTACT
Found at i:2423328 original size:15 final size:14
Alignment explanation
Indices: 2423281--2423393 Score: 63
Period size: 15 Copynumber: 7.5 Consensus size: 14
2423271 ACTATTATTA
2423281 TATTATATTTATTAT-
1 TATTATA-TT-TTATC
2423296 TATTACTATTATTA-C
1 TATTA-TATT-TTATC
2423311 TATTATATTTTAATC
1 TATTATATTTT-ATC
*
2423326 TATATTTATTTTATC
1 TAT-TATATTTTATC
*
2423341 TAATTTTA-TTTATC
1 T-ATTATATTTTATC
2423355 TATTTATATCTCTGTTAT-
1 TA-TTATA--T-T-TTATC
*
2423373 TATTATATTTTATG
1 TATTATATTTTATC
2423387 TATTATA
1 TATTATA
2423394 CCTATATTTA
Statistics
Matches: 83, Mismatches: 2, Indels: 27
0.74 0.02 0.24
Matches are distributed among these distances:
13 7 0.08
14 24 0.29
15 29 0.35
16 11 0.13
17 5 0.06
18 3 0.04
19 4 0.05
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (14 bp):
TATTATATTTTATC
Found at i:2423508 original size:3 final size:3
Alignment explanation
Indices: 2423500--2423888 Score: 148
Period size: 3 Copynumber: 131.7 Consensus size: 3
2423490 TTTTGTGTCT
*
2423500 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTG TTA GTTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA
* * * * ** *
2423546 CTA TTA TTG TTA -TA TTTA TTC TTA CTA TTA TTA TTA TTA CCA CTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * ** * **
2423591 CTA TGA TTT TTA TTA ACA -TA TTA TTG TTA TT- TT- TTA CCA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * **
2423635 TTA TT- TCCTA TCTT TTA TATA TTA TTA TTG TTA TTA ACA TATA TTA
1 TTA TTA T--TA T-TA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA
* * * *
2423681 TTA TTA AT- TTA CTA TTA TTT TTA CTT- TTA TTA TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * * ** *
2423725 -TA TTA TTA TTG TTA TTA TTG TT- TTC TATA TTA TTA ATA CAA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
* * * * *
2423769 TTAA TT- TTC TTA TTA TTA CTA TTA TTA GTA TCA -TA GGTA TTA TT-
1 TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
** **
2423813 TTA TTA TTA TTA TTA GCA TTA TTA TT- TT- TTA -TA TTA TCC TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
2423857 TTA CTA TTA TTA TCA ATA TTA TTA ATA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
2423889 GTTTTCATTA
Statistics
Matches: 285, Mismatches: 74, Indels: 54
0.69 0.18 0.13
Matches are distributed among these distances:
2 31 0.11
3 228 0.80
4 25 0.09
5 1 0.00
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:2423716 original size:32 final size:29
Alignment explanation
Indices: 2423676--2423759 Score: 93
Period size: 29 Copynumber: 2.9 Consensus size: 29
2423666 TATTAACATA
*
2423676 TATTATTATTAATTTACTATTATTTTTACTT-T
1 TATTATTATT-A-TTACTA-TATTATTA-TTGT
2423708 TATTATTATTATTACTATATTATTATTGT
1 TATTATTATTATTACTATATTATTATTGT
*
2423737 TATTATTGTT-TT-CTATATTATTA
1 TATTATTATTATTACTATATTATTA
2423760 ATACAAATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
27 11 0.22
28 4 0.08
29 17 0.35
30 6 0.12
31 1 0.02
32 10 0.20
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (29 bp):
TATTATTATTATTACTATATTATTATTGT
Found at i:2456193 original size:11 final size:11
Alignment explanation
Indices: 2456177--2456219 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
2456167 TAGAATATAT
2456177 CCCATACCTTG
1 CCCATACCTTG
*
2456188 CCCATACCTTT
1 CCCATACCTTG
*
2456199 CCCATACC-TA
1 CCCATACCTTG
2456209 CCCATACCTTG
1 CCCATACCTTG
2456220 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:2456201 original size:22 final size:21
Alignment explanation
Indices: 2456176--2456218 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
2456166 TTAGAATATA
*
2456176 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
2456198 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
2456219 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:2456780 original size:18 final size:18
Alignment explanation
Indices: 2456753--2456845 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
2456743 TACGACCGTT
2456753 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
2456771 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
** *
2456789 TACATTACTATTTACGTA
1 TACGGTACTATTCACGTA
*
2456807 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
2456825 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
2456843 TAC
1 TAC
2456846 AGTAGTTGGG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:2460910 original size:11 final size:11
Alignment explanation
Indices: 2460894--2460936 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
2460884 TAGAATATAT
2460894 CCCATACCTTG
1 CCCATACCTTG
*
2460905 CCCATACCTTT
1 CCCATACCTTG
*
2460916 CCCATACC-TA
1 CCCATACCTTG
2460926 CCCATACCTTG
1 CCCATACCTTG
2460937 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:2460921 original size:22 final size:21
Alignment explanation
Indices: 2460893--2460935 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
2460883 TTAGAATATA
*
2460893 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
2460915 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
2460936 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:2464807 original size:42 final size:41
Alignment explanation
Indices: 2464755--2464834 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 41
2464745 CATTAAAGCT
* *
2464755 TGAACTTTTTTTTTGT-TTAAGTTAATCTCTAAACTTAAAAG
1 TGAACTTTTTTTTTGTCAT-AGTCAATCTCTAAACTTAAAAG
*
2464796 TGAACTTTTTTTTTTGTCATAGTCAATCTCTAAATTTAA
1 TGAAC-TTTTTTTTTGTCATAGTCAATCTCTAAACTTAA
2464835 CAATTATTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 5 0.15
42 28 0.82
43 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.50
Consensus pattern (41 bp):
TGAACTTTTTTTTTGTCATAGTCAATCTCTAAACTTAAAAG
Found at i:2471294 original size:28 final size:28
Alignment explanation
Indices: 2471254--2471310 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
2471244 ATCTGGATTC
* *
2471254 TAAACCCTAGACCATAGACCTTAAACTT
1 TAAACCATAGACCATAGACCTCAAACTT
* *
2471282 TAAACCATCGACCTTAGACCTCAAACTT
1 TAAACCATAGACCATAGACCTCAAACTT
2471310 T
1 T
2471311 GGACCCCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.37, C:0.30, G:0.07, T:0.26
Consensus pattern (28 bp):
TAAACCATAGACCATAGACCTCAAACTT
Found at i:2471307 original size:21 final size:21
Alignment explanation
Indices: 2471264--2471307 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
2471254 TAAACCCTAG
* *
2471264 ACCATAGACCTTAAACTTTAA
1 ACCATAGACCTTAAACCTCAA
* *
2471285 ACCATCGACCTTAGACCTCAA
1 ACCATAGACCTTAAACCTCAA
2471306 AC
1 AC
2471308 TTTGGACCCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.32, G:0.07, T:0.23
Consensus pattern (21 bp):
ACCATAGACCTTAAACCTCAA
Found at i:2475947 original size:39 final size:39
Alignment explanation
Indices: 2475899--2475981 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
2475889 ATCATGGCGG
* * *
2475899 TCGGTTTGGTGCGTACTGTTTCAGTACTAACATGGAACA
1 TCGGCTTGGTGCGCACTGTTTCAGTACTAAAATGGAACA
2475938 TCGGCTTGGTGCGCACTGTTTCAGTACTAAAATGGAACA
1 TCGGCTTGGTGCGCACTGTTTCAGTACTAAAATGGAACA
2475977 TCGGC
1 TCGGC
2475982 CGTTTTTTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (39 bp):
TCGGCTTGGTGCGCACTGTTTCAGTACTAAAATGGAACA
Found at i:2481113 original size:2 final size:2
Alignment explanation
Indices: 2481106--2481140 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
2481096 GATTGTTCAG
2481106 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2481141 GATGTGCCAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2483031 original size:45 final size:45
Alignment explanation
Indices: 2482967--2483059 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
2482957 AATCCGAGAA
2482967 CTGTGATTGCTTACAAGGTATGCCATTCCTTTTACAGAGTTAGCT
1 CTGTGATTGCTTACAAGGTATGCCATTCCTTTTACAGAGTTAGCT
* *
2483012 CTGTGATTGCTTACAAGGTATGCCGTTCCTTTTAGAGAGTTAGCT
1 CTGTGATTGCTTACAAGGTATGCCATTCCTTTTACAGAGTTAGCT
2483057 CTG
1 CTG
2483060 GTTTATATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (45 bp):
CTGTGATTGCTTACAAGGTATGCCATTCCTTTTACAGAGTTAGCT
Found at i:2487402 original size:3 final size:3
Alignment explanation
Indices: 2487381--2487432 Score: 68
Period size: 3 Copynumber: 16.7 Consensus size: 3
2487371 CGTCTGATAC
* *
2487381 TAT TAT TTT TAT TCCT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2487427 GTAT TA
1 -TAT TA
2487433 GTGTATACTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
3 38 0.88
4 5 0.12
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:2487516 original size:41 final size:41
Alignment explanation
Indices: 2487463--2487544 Score: 98
Period size: 41 Copynumber: 2.0 Consensus size: 41
2487453 TATATATATG
* *
2487463 TAGTAATCTTTTATTACTTT-ATTTTTA-TATTATTATTATTA
1 TAGTAATCTTTTA-TA-TTTCAATATTATTATTATTATTATTA
2487504 TAGTAA-CTTTTTATATTTCAATATTATTATTATTATTATTA
1 TAGTAATC-TTTTATATTTCAATATTATTATTATTATTATTA
2487545 GTATATGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
39 3 0.08
40 8 0.22
41 25 0.69
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (41 bp):
TAGTAATCTTTTATATTTCAATATTATTATTATTATTATTA
Found at i:2487577 original size:21 final size:20
Alignment explanation
Indices: 2487531--2487599 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 20
2487521 TCAATATTAT
2487531 TATTATTATTAT-TA-GTATA
1 TATT-TTATTATATATGTATA
*
2487550 TGTTTTATTATATATGTATA
1 TATTTTATTATATATGTATA
2487570 TATCTTTAATATATATATACGTATA
1 TAT-TTT-AT-TATATAT--GTATA
2487595 TATTT
1 TATTT
2487600 ATGTAGTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
18 7 0.17
19 5 0.12
20 7 0.17
21 3 0.07
22 2 0.05
23 7 0.17
24 2 0.05
25 8 0.20
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.57
Consensus pattern (20 bp):
TATTTTATTATATATGTATA
Found at i:2487661 original size:11 final size:11
Alignment explanation
Indices: 2487645--2487713 Score: 52
Period size: 11 Copynumber: 6.0 Consensus size: 11
2487635 TTATTTCTAA
2487645 TATGTATATAT
1 TATGTATATAT
*
2487656 TATGTAAATATT
1 TATGTATATA-T
2487668 CTAATGT-TATAT
1 -T-ATGTATATAT
*
2487680 TATATATATAT
1 TATGTATATAT
*
2487691 T-TTTCATATTAT
1 TATGT-ATA-TAT
2487703 TATGTATATAT
1 TATGTATATAT
2487714 GTTTTTAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
10 5 0.11
11 22 0.48
12 9 0.20
13 6 0.13
14 4 0.09
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (11 bp):
TATGTATATAT
Found at i:2487975 original size:3 final size:3
Alignment explanation
Indices: 2487967--2487992 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
2487957 TAATTTACTG
2487967 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
2487993 CACTATTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:2492258 original size:9 final size:9
Alignment explanation
Indices: 2492244--2492278 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
2492234 ACTGCAGAAG
*
2492244 ACGAGGAGT
1 ACGAGGAAT
2492253 ACGAGGAAT
1 ACGAGGAAT
*
2492262 ATGAGGAAT
1 ACGAGGAAT
2492271 ACGAGGAA
1 ACGAGGAA
2492279 GAGGCTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.43, C:0.09, G:0.37, T:0.11
Consensus pattern (9 bp):
ACGAGGAAT
Found at i:2496424 original size:31 final size:31
Alignment explanation
Indices: 2496389--2496458 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
2496379 CTTAACAGCC
* *
2496389 TAGTGACTTGAATAAAAAATTTCAAATAGTT
1 TAGTGACTTAAATAAAAAATTTCAAATAATT
* * *
2496420 TAGTGACTTAAATGAAAACTTTTAAATAATT
1 TAGTGACTTAAATAAAAAATTTCAAATAATT
2496451 TAGTGACT
1 TAGTGACT
2496459 ATTTTGTAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (31 bp):
TAGTGACTTAAATAAAAAATTTCAAATAATT
Found at i:2497291 original size:32 final size:30
Alignment explanation
Indices: 2497249--2497310 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
2497239 AAAGATTGAT
* *
2497249 TAATAACCAAATTTAACTGAATAAAAAAAGAA
1 TAATAACCAAA-TTAAC-CAAAAAAAAAAGAA
*
2497281 TAATACCCAAATTAACCAAAAAAAAAAGAA
1 TAATAACCAAATTAACCAAAAAAAAAAGAA
2497311 GAAAATATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 12 0.44
31 5 0.19
32 10 0.37
ACGTcount: A:0.65, C:0.13, G:0.05, T:0.18
Consensus pattern (30 bp):
TAATAACCAAATTAACCAAAAAAAAAAGAA
Found at i:2500275 original size:31 final size:30
Alignment explanation
Indices: 2500237--2500311 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 30
2500227 TTAATATAAT
2500237 ATTTGGTACTTGAACTTGACACTTTTTCTTA
1 ATTTGGTACTT-AACTTGACACTTTTTCTTA
* * *
2500268 ATTTGGTACCTAACCTTGATACTTTTTGTTA
1 ATTTGGTACTTAA-CTTGACACTTTTTCTTA
*
2500299 AGTTGGTACTTAA
1 ATTTGGTACTTAA
2500312 ACTTTTTGGG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
30 2 0.05
31 36 0.95
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.47
Consensus pattern (30 bp):
ATTTGGTACTTAACTTGACACTTTTTCTTA
Found at i:2502001 original size:49 final size:49
Alignment explanation
Indices: 2501924--2502112 Score: 218
Period size: 49 Copynumber: 3.8 Consensus size: 49
2501914 TAGCCGAAGC
*
2501924 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
2501973 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
* * * * *
2502023 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGC-TCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA--TGCGACCAA-T
** *
2502074 TATGAGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
2502113 CGTGACCTCA
Statistics
Matches: 116, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
49 42 0.36
50 39 0.34
51 34 0.29
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:2502110 original size:101 final size:99
Alignment explanation
Indices: 2501937--2502120 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 99
2501927 CTGGTACGCA
*
2501937 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
2502002 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* * * *
2502036 TAGTAGCCTGCACTTAGTACTACACACGTGC-TCGAAGTTATGAGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACA--TGCGACCAA-TTATCAGGTACACATAGTAGCCTGCAC
2502100 TTAGTACTACACACGTGACCT
63 TTAGTACTACACACGTGACCT
2502121 CACAATAGCT
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
99 26 0.34
100 3 0.04
101 48 0.62
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:2513055 original size:45 final size:46
Alignment explanation
Indices: 2512962--2513089 Score: 111
Period size: 45 Copynumber: 2.7 Consensus size: 46
2512952 AAATATATAC
* *
2512962 ATAAGATAGTACATAAATAATCTA-AATAATATAATATTGAAAAAATAT
1 ATAATATA-TACAT-AATAATATATAA-AATATAATATTGAAAAAATAT
* *
2513010 AT-ATATATACATAATAATATATAAAATATAATGTT-AAAAGCATAT
1 ATAATATATACATAATAATATATAAAATATAATATTGAAAA-AATAT
* * *
2513055 ATAACATATATAAAAAAT-ATATATATAATATAATA
1 AT-A-ATATATACATAATAATATATAAAATATAATA
2513090 CATAAGTATT
Statistics
Matches: 67, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
44 4 0.06
45 24 0.36
46 7 0.10
47 19 0.28
48 13 0.19
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.34
Consensus pattern (46 bp):
ATAATATATACATAATAATATATAAAATATAATATTGAAAAAATAT
Found at i:2513085 original size:20 final size:20
Alignment explanation
Indices: 2512990--2513087 Score: 63
Period size: 22 Copynumber: 4.5 Consensus size: 20
2512980 AATCTAAATA
2512990 ATATAATATTGAAAAAATATAT
1 ATATAATA-T-AAAAAATATAT
* * *
2513012 ATATATACATAATAATATATAAA
1 ATATA-ATATAA-AAAATAT-AT
* *
2513035 ATATAATGTTAAAAGCATATAT
1 ATATAAT-ATAAAA-AATATAT
*
2513057 A-ACATATATAAAAAATATAT
1 ATATA-ATATAAAAAATATAT
2513077 ATATAATATAA
1 ATATAATATAA
2513088 TACATAAGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 16
0.68 0.13 0.19
Matches are distributed among these distances:
20 13 0.22
21 11 0.19
22 19 0.33
23 15 0.26
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (20 bp):
ATATAATATAAAAAATATAT
Found at i:2514446 original size:29 final size:27
Alignment explanation
Indices: 2514412--2514472 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 27
2514402 AAAATGGGGT
2514412 TTGGGCTTCTGTTGGGTTAATTTTGAGTG
1 TTGGGCTTC--TTGGGTTAATTTTGAGTG
2514441 TTGGG---CTTGGGTTAATTTTGAGTG
1 TTGGGCTTCTTGGGTTAATTTTGAGTG
*
2514465 TTGAGCTT
1 TTGGGCTT
2514473 GAGTAGGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
24 22 0.79
26 1 0.04
29 5 0.18
ACGTcount: A:0.11, C:0.07, G:0.34, T:0.48
Consensus pattern (27 bp):
TTGGGCTTCTTGGGTTAATTTTGAGTG
Found at i:2514450 original size:24 final size:24
Alignment explanation
Indices: 2514423--2514473 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
2514413 TGGGCTTCTG
*
2514423 TTGGGTTAATTTTGAGTGTTGGGC
1 TTGGGTTAATTTTGAGTGTTGAGC
2514447 TTGGGTTAATTTTGAGTGTTGAGC
1 TTGGGTTAATTTTGAGTGTTGAGC
2514471 TTG
1 TTG
2514474 AGTAGGTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.14, C:0.04, G:0.35, T:0.47
Consensus pattern (24 bp):
TTGGGTTAATTTTGAGTGTTGAGC
Found at i:2516338 original size:17 final size:17
Alignment explanation
Indices: 2516296--2516339 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
2516286 TGCTTTTTTC
2516296 TAAAATAAATGCAAAAAA
1 TAAAA-AAATGCAAAAAA
** *
2516314 CGAGAAAATGCAAAAAA
1 TAAAAAAATGCAAAAAA
2516331 TAAAAAAAT
1 TAAAAAAAT
2516340 AGTAAAAAAA
Statistics
Matches: 20, Mismatches: 6, Indels: 1
0.74 0.22 0.04
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.70, C:0.07, G:0.09, T:0.14
Consensus pattern (17 bp):
TAAAAAAATGCAAAAAA
Found at i:2520338 original size:19 final size:19
Alignment explanation
Indices: 2520314--2520353 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
2520304 GAAATATGAT
2520314 TTGAACTCGAACTTAAACA
1 TTGAACTCGAACTTAAACA
2520333 TTGAACTCGAACTTAAACA
1 TTGAACTCGAACTTAAACA
2520352 TT
1 TT
2520354 TAAGATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (19 bp):
TTGAACTCGAACTTAAACA
Found at i:2524498 original size:15 final size:15
Alignment explanation
Indices: 2524464--2524518 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
2524454 ATATGTTCTG
* *
2524464 ATTGAAATGGTAAA-
1 ATTGAGATGTTAAAC
2524478 ATTGAGATGTTAAAC
1 ATTGAGATGTTAAAC
2524493 ATTGAGATGTTAAAC
1 ATTGAGATGTTAAAC
*
2524508 ATTGTGATGTT
1 ATTGAGATGTT
2524519 TTAGCTTCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
14 12 0.32
15 25 0.68
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (15 bp):
ATTGAGATGTTAAAC
Done.