Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 92 of 333
Found at i:28988775 original size:47 final size:47
Alignment explanation
Indices: 28988723--28989512 Score: 1265
Period size: 47 Copynumber: 16.6 Consensus size: 47
28988713 GATAATTGTG
* *
28988723 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
28988770 ATGTGAAAGTGTATATACGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28988817 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28988866 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28988915 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28988962 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28989011 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28989058 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
28989107 ATGTGAAAGTGTATATATGTGGTAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
28989154 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28989201 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28989250 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28989299 ATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
28989346 ATGTGAAAGTGTGTATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28989393 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
28989440 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28989487 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
28989513 TCCCGAAGGG
Statistics
Matches: 699, Mismatches: 36, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
47 420 0.60
49 279 0.40
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:28988848 original size:96 final size:95
Alignment explanation
Indices: 28988723--28989512 Score: 1273
Period size: 96 Copynumber: 8.3 Consensus size: 95
28988713 GATAATTGTG
* *
28988723 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
*
28988787 CGTGATAAGGCCGAATGGCCAATGTGATGA
66 TGTGATAAGGCCGAATGGCCAATGTGATGA
28988817 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATAT
*
28988882 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
63 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
28988915 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATAT
*
28988980 ATGTGATAAGGCCGAATGGCCGATGTGATGA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGA
28989011 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATAT
* *
28989076 ATGTGATAAGGCCTAATGGCCGATGTGATGA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
28989107 ATGTGAAAGTGTATATATGTGGTAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
28989171 TGTGATAAGGCCGAATGGCCAATGTGATGA
66 TGTGATAAGGCCGAATGGCCAATGTGATGA
28989201 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATAT
* *
28989266 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
63 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
28989299 ATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TGTATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
* * *
28989363 TGTGATAAGGCCTAATAGCCGATGTGATGA
66 TGTGATAAGGCCGAATGGCCAATGTGATGA
*
28989393 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
* * * * *
28989457 TGTGACAGGGCCGAGTGGCCAACGTGATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGA
*
28989487 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
28989513 TCCCGAAGGG
Statistics
Matches: 657, Mismatches: 31, Indels: 16
0.93 0.04 0.02
Matches are distributed among these distances:
94 195 0.30
96 372 0.57
98 90 0.14
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (95 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
TGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:28989296 original size:22 final size:22
Alignment explanation
Indices: 28989268--28989343 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
28989258 GTGTATATAT
28989268 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
28989290 ATGTGATGAATGTGAAAGTGTGTAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
28989315 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
28989337 ATGTGAT
1 ATGTGAT
28989344 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:28991797 original size:40 final size:40
Alignment explanation
Indices: 28991742--28991978 Score: 323
Period size: 40 Copynumber: 5.9 Consensus size: 40
28991732 CTCGACGATA
28991742 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
28991782 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
28991822 ATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
28991862 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * * *
28991902 ATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGTGATGT
* * *
28991942 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
28991979 CGTGTATTCT
Statistics
Matches: 175, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 172 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:28995686 original size:47 final size:47
Alignment explanation
Indices: 28995634--28996998 Score: 2167
Period size: 47 Copynumber: 28.6 Consensus size: 47
28995624 GATAATTGTG
* *
28995634 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
28995681 ATGTGAAAGTGTATATACGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28995728 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28995777 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28995826 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
28995873 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28995920 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28995969 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28996018 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
28996065 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
28996112 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28996159 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996208 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28996257 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28996304 ATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGA
*
28996351 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996400 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996449 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996496 ATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28996544 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996591 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28996640 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
28996687 ATGTGAAAGTGTAGATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996734 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996783 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* **
28996832 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28996879 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
28996926 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
28996973 ATGTGAAAGTGTATAAATATGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
28996999 TCCCGAAGGG
Statistics
Matches: 1242, Mismatches: 59, Indels: 34
0.93 0.04 0.03
Matches are distributed among these distances:
46 7 0.01
47 681 0.55
48 41 0.03
49 511 0.41
50 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:28995849 original size:192 final size:191
Alignment explanation
Indices: 28995634--28996998 Score: 2255
Period size: 192 Copynumber: 7.1 Consensus size: 191
28995624 GATAATTGTG
*
28995634 ATGTGAATGT-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
28995698 CGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
28995763 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
129 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28995826 ATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
28995890 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
*
28995955 GGCCGATATGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
129 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28996018 ATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
28996082 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* *
28996147 CCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGA
131 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996208 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
28996273 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTGAAT
65 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AAT
* *
28996337 GGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGA
129 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996400 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
28996465 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
28996529 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
128 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996591 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
28996656 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAGATATGTGATAAGGCCGAATG
65 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
28996721 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
130 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
28996783 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
28996848 ATGTGATAAGGCCTAATAGCTAATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
65 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * * * * *
28996913 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
130 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
28996973 ATGTGAAAGTG-TATAAATATGATAAG
1 ATGTGAAAGTGATATATATGTGATAAG
28996999 TCCCGAAGGG
Statistics
Matches: 1126, Mismatches: 37, Indels: 24
0.95 0.03 0.02
Matches are distributed among these distances:
188 13 0.01
190 176 0.16
191 140 0.12
192 752 0.67
193 43 0.04
194 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (191 bp):
ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:28996058 original size:239 final size:236
Alignment explanation
Indices: 28995634--28996998 Score: 2173
Period size: 239 Copynumber: 5.7 Consensus size: 236
28995624 GATAATTGTG
* * * *
28995634 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
* *
28995699 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
28995764 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
129 GCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
28995829 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
193 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28995873 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATAT
*
28995938 ATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
28996003 TGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
127 TGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
28996067 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
192 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28996112 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATAT
*
28996177 ATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
28996242 TGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
127 TGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
28996306 GTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGA
192 GTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGA
* *
28996351 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TAT
28996416 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
28996481 TGGCCGATGTGATGAATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
127 TGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
28996545 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
191 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
28996591 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
28996656 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAGATATGTGATAAGGCCGAATG
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
28996721 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
129 GCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
28996786 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
193 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
28996832 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
* * * * *
28996897 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * * *
28996962 CAACGTGATGGATGTGAAAGTG-TATAAATATGATAAG
131 CGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
28996999 TCCCGAAGGG
Statistics
Matches: 1076, Mismatches: 39, Indels: 24
0.94 0.03 0.02
Matches are distributed among these distances:
237 13 0.01
238 90 0.08
239 605 0.56
240 136 0.13
241 232 0.22
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (236 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:28996109 original size:22 final size:22
Alignment explanation
Indices: 28996081--28996156 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
28996071 AAGTGTATAT
28996081 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
28996103 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
28996127 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
28996150 ATGTGAT
1 ATGTGAT
28996157 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:29002328 original size:25 final size:24
Alignment explanation
Indices: 29002295--29002342 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
29002285 CTATAACATG
* * *
29002295 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
29002319 AAAAGTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
29002343 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:29002404 original size:20 final size:20
Alignment explanation
Indices: 29002379--29002448 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
29002369 ATTTTGATAA
29002379 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
29002399 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
29002419 ACATGATATGTAT-ATATGC
1 ACATGATATGTATGATATGC
*
29002438 ACATGAGATGT
1 ACATGATATGT
29002449 TCATAAATGC
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
19 16 0.34
20 31 0.66
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:29002525 original size:23 final size:23
Alignment explanation
Indices: 29002495--29002614 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
29002485 AGGAAGTGCA
29002495 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
29002518 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
29002542 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
29002565 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
29002588 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
29002612 AAA
1 AAA
29002615 AGAGGGTAGG
Statistics
Matches: 92, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
23 48 0.52
24 44 0.48
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:29002550 original size:24 final size:23
Alignment explanation
Indices: 29002494--29002616 Score: 192
Period size: 24 Copynumber: 5.2 Consensus size: 23
29002484 GAGGAAGTGC
29002494 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
29002517 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
29002540 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
29002564 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
29002588 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
29002612 AAAAG
1 AAAAG
29002617 AGGGTAGGCC
Statistics
Matches: 93, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
23 43 0.46
24 50 0.54
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:29002562 original size:47 final size:47
Alignment explanation
Indices: 29002493--29002614 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
29002483 GGAGGAAGTG
29002493 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
29002540 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
29002587 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
29002615 AGAGGGTAGG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:29002863 original size:31 final size:31
Alignment explanation
Indices: 29002828--29002891 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
29002818 CGTTTACAGT
*
29002828 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
** *
29002859 AAAGGCTTCGACCCAGTGTTATGAATTATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
29002890 AA
1 AA
29002892 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:29016924 original size:42 final size:42
Alignment explanation
Indices: 29016822--29016930 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
29016812 TCGTTTCAAT
* * *
29016822 GCCATATCCC-AGATATGGTCTTACATGAAATATCATATCGAT
1 GCCATATCCCGA-ATATGGTCTTATATGAAATATCATACCGAG
* * *
29016864 GCAATGTCCCCG-ACATGGTCTTATATGAAATCA-CATACCGAG
1 GCCATAT-CCCGAATATGGTCTTATATGAAAT-ATCATACCGAG
29016906 GCCATATCCCGAATATGGTCTTATA
1 GCCATATCCCGAATATGGTCTTATA
29016931 CGGAATCTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
41 4 0.07
42 46 0.85
43 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
GCCATATCCCGAATATGGTCTTATATGAAATATCATACCGAG
Found at i:29019356 original size:6 final size:6
Alignment explanation
Indices: 29019345--29019369 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
29019335 AATTTTCTGA
29019345 CTCTCC CTCTCC CTCTCC CTCTCC C
1 CTCTCC CTCTCC CTCTCC CTCTCC C
29019370 GCTACATCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (6 bp):
CTCTCC
Found at i:29026837 original size:79 final size:81
Alignment explanation
Indices: 29026701--29026885 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
29026691 TTGAATGATG
* *
29026701 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
29026765 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
29026780 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
29026842 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
29026860 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
29026886 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:29026899 original size:40 final size:40
Alignment explanation
Indices: 29026702--29026885 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
29026692 TGAATGATGT
* * * *
29026702 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
29026742 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
29026782 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
29026820 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
29026861 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
29026886 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:29026907 original size:79 final size:79
Alignment explanation
Indices: 29026754--29026918 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
29026744 GGACTAAGAT
* * **
29026754 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
29026819 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
29026833 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
29026896 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
29026912 CCGAAGG
1 CCGAAGG
29026919 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:29034274 original size:79 final size:81
Alignment explanation
Indices: 29034138--29034322 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 81
29034128 TTGAATGATG
* *
29034138 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
29034202 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * **
29034217 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAG-TGACCAAATCCGGACTAAGAT-CCGAAGGC
*
29034278 AATTGTGCGAGTTACTATA
63 AATTGTGCGAGATACTATA
* * *
29034297 ACCGGGTTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
29034323 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:29034329 original size:40 final size:40
Alignment explanation
Indices: 29034138--29034322 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
29034128 TTGAATGATG
* * * * *
29034138 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
29034178 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
29034218 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
29034257 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
29034298 -CCGGGTTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
29034323 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:29034344 original size:79 final size:79
Alignment explanation
Indices: 29034191--29034355 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
29034181 GGACTAAGAT
* * **
29034191 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGCTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGCTACTAA
*
29034256 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
29034270 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGTTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGCTA-C
* *
29034333 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
29034349 CCGAAGG
1 CCGAAGG
29034356 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGCTACTAA
ATCCGGGTTAAATC
Found at i:29037935 original size:29 final size:29
Alignment explanation
Indices: 29037788--29037932 Score: 152
Period size: 29 Copynumber: 5.1 Consensus size: 29
29037778 ACCCCTACAT
*
29037788 ACATGCATATGGCCCACTT-GGCCC--ATC
1 ACATTCATATGGCCCA-TTAGGCCCAAATC
* * *
29037815 TCATTCGTATGGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
29037844 ACATTCATATGGCCCATCATGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
29037873 ACATTCATATGGCCTATTAGTCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
29037902 ACCTTTATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
29037931 AC
1 AC
29037933 CTTATATTAA
Statistics
Matches: 97, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 2 0.02
27 18 0.19
29 77 0.79
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:29042433 original size:29 final size:29
Alignment explanation
Indices: 29042286--29042430 Score: 161
Period size: 29 Copynumber: 5.1 Consensus size: 29
29042276 ACCCCTACAT
*
29042286 ACATGCATATGGCCCA-CTAGGCCC--ATC
1 ACATTCATATGGCCCATC-AGGCCCAAATC
* *
29042313 TCATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAAATC
*
29042342 ACATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* * *
29042371 ATATTCATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* * * *
29042400 ACCTTTATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
29042429 AC
1 AC
29042431 CTTATATTCA
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
27 20 0.20
28 1 0.01
29 81 0.79
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAAATC
Found at i:29043855 original size:16 final size:16
Alignment explanation
Indices: 29043834--29043865 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
29043824 AAGTTCAAGA
29043834 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
29043850 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
29043866 GCATTACACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.31, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:29046021 original size:6 final size:6
Alignment explanation
Indices: 29046012--29046062 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
29046002 TAATTTAGCC
* * *
29046012 ATTTTT ATTTTT ATTTTAAT ATTTTT ATTTTT A-ATTT AATTTA ATTTTT
1 ATTTTT ATTTTT ATTTT--T ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
29046061 AT
1 AT
29046063 ATTCTAATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
5 4 0.11
6 27 0.73
8 6 0.16
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (6 bp):
ATTTTT
Found at i:29046035 original size:20 final size:20
Alignment explanation
Indices: 29046012--29046051 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
29046002 TAATTTAGCC
*
29046012 ATTTTTATTTTTATTTTAAT
1 ATTTTTATTTTTAATTTAAT
29046032 ATTTTTATTTTTAATTTAAT
1 ATTTTTATTTTTAATTTAAT
29046052 TTAATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (20 bp):
ATTTTTATTTTTAATTTAAT
Found at i:29048975 original size:13 final size:13
Alignment explanation
Indices: 29048957--29048988 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
29048947 GTGTGTGACT
29048957 ACACGACCTACCC
1 ACACGACCTACCC
29048970 ACACGACCTACCC
1 ACACGACCTACCC
29048983 ACACGA
1 ACACGA
29048989 GCGTGTAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.50, G:0.09, T:0.06
Consensus pattern (13 bp):
ACACGACCTACCC
Found at i:29056222 original size:13 final size:14
Alignment explanation
Indices: 29056206--29056241 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
29056196 CAATCTCATG
29056206 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
29056219 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
29056232 TCTC-ATTTCA
1 TCTCAATTTCA
29056242 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:29056893 original size:15 final size:15
Alignment explanation
Indices: 29056873--29056919 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
29056863 TAATATATAT
29056873 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
29056888 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
29056903 TTCAATCAATATAAA
1 TTCAATCAATATAAA
29056918 TT
1 TT
29056920 TGATATATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:29057638 original size:19 final size:20
Alignment explanation
Indices: 29057602--29057651 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
29057592 CAAACCCTAA
* *
29057602 TTCTCCCTT-TTTCTTTTCT
1 TTCTCCTTTCTTTCTTTTCC
29057621 TTCTCCTTTCTTTC-TTTCC
1 TTCTCCTTTCTTTCTTTTCC
*
29057640 TTC-CCTTGCTTT
1 TTCTCCTTTCTTT
29057652 TCGTTTGCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 8 0.30
19 15 0.56
20 4 0.15
ACGTcount: A:0.00, C:0.34, G:0.02, T:0.64
Consensus pattern (20 bp):
TTCTCCTTTCTTTCTTTTCC
Found at i:29062081 original size:48 final size:49
Alignment explanation
Indices: 29062007--29062294 Score: 321
Period size: 50 Copynumber: 5.9 Consensus size: 49
29061997 TACTAGGGTA
* * * *
29062007 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGT
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACACCGT
* * * * *
29062056 A-ATGAGAGCTAGTGTAAGACTATGTTTGGAACATGGCA-CGGGCATCGT
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-GACACCGT
* * *
29062104 A-ATGAGAGCTAGTGTAAGACCATATCTGGGACATGGCATCGACACCGAT
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACACCG-T
* * * *
29062153 ATTTGAGAGCCAGTGGAAGACCATGTCTGGGACATGGCATCGACACCAAT
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACACC-GT
* *
29062203 ATATGAGAGCCATTGTAAGACCATGTATGGGACATGGCATCGACACCGAT
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACACCG-T
* * **
29062253 ATATGAAAGCCAGTCTAAGACCATAATTGGGACATGGCATCG
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
29062295 GCGTCTTACC
Statistics
Matches: 208, Mismatches: 25, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
47 1 0.00
48 81 0.39
49 4 0.02
50 122 0.59
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (49 bp):
ATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACACCGT
Found at i:29070481 original size:17 final size:18
Alignment explanation
Indices: 29070455--29070488 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
29070445 TATATTTTTA
29070455 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
29070472 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
29070489 ATATTTAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:29078054 original size:48 final size:47
Alignment explanation
Indices: 29077894--29078059 Score: 162
Period size: 48 Copynumber: 3.6 Consensus size: 47
29077884 CCCGTATAAT
** * *
29077894 ACCATATCTGGGATATGGCATCAGCATCAATAGGTGTTACCATGTAAG
1 ACCATATCTGGGATATGGCATTGGCATCAAT-GGTGATCCCATGTAAG
* *
29077942 ACCATATCTGGGATATTGCATT-G-AT--AT-GAGATCCCATGTAAG
1 ACCATATCTGGGATATGGCATTGGCATCAATGGTGATCCCATGTAAG
*** * * *
29077984 ACCACGCCTGGGACACGACATTGGCATCGAATGGTGATCCCATGTAAG
1 ACCATATCTGGGATATGGCATTGGCATC-AATGGTGATCCCATGTAAG
*
29078032 ACCATATCTAGGATATGGCATTGGCATC
1 ACCATATCTGGGATATGGCATTGGCATC
29078060 TTATTATGTG
Statistics
Matches: 92, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
42 27 0.29
43 1 0.01
44 4 0.04
46 2 0.02
47 3 0.03
48 55 0.60
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (47 bp):
ACCATATCTGGGATATGGCATTGGCATCAATGGTGATCCCATGTAAG
Found at i:29084830 original size:37 final size:37
Alignment explanation
Indices: 29084780--29084858 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
29084770 TTATTACGAA
* * *
29084780 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
29084817 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
29084854 GTCTT
1 GTCTT
29084859 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:29085064 original size:47 final size:47
Alignment explanation
Indices: 29084977--29085175 Score: 245
Period size: 47 Copynumber: 4.2 Consensus size: 47
29084967 CCTTTCGGGA
* * * * * * * * *
29084977 CTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
29085024 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
29085071 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
29085118 CTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
29085165 CTCTTTCACAT
1 CT-TATCACAT
29085176 TCATCACATC
Statistics
Matches: 134, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 128 0.96
48 6 0.04
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:29085176 original size:32 final size:31
Alignment explanation
Indices: 29085135--29085205 Score: 115
Period size: 32 Copynumber: 2.3 Consensus size: 31
29085125 CACACATACA
*
29085135 CTTTCACATTCATCACGTCGGCTATTAGGCC
1 CTTTCACATTCATCACATCGGCTATTAGGCC
29085166 TCTTTCACATTCATCACATCGGCTATTAGGCC
1 -CTTTCACATTCATCACATCGGCTATTAGGCC
*
29085198 CTATCACA
1 CTTTCACA
29085206 CATATACACT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
31 7 0.19
32 30 0.81
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.32
Consensus pattern (31 bp):
CTTTCACATTCATCACATCGGCTATTAGGCC
Found at i:29085183 original size:79 final size:78
Alignment explanation
Indices: 29085088--29085252 Score: 294
Period size: 79 Copynumber: 2.1 Consensus size: 78
29085078 CATATATACA
*
29085088 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACACATACACTTTCACATTCATCACGT
1 CTTTCACATTCATCACATCGGCTATTAGGCCCTATCACACACATACACTTTCACATTCATCACGT
29085153 CGGCTATTAGGCC
66 CGGCTATTAGGCC
*
29085166 TCTTTCACATTCATCACATCGGCTATTAGGCCCTATCACACATATACACTTTCACATTCATCACG
1 -CTTTCACATTCATCACATCGGCTATTAGGCCCTATCACACACATACACTTTCACATTCATCACG
29085231 TCGGCTATTAGGCC
65 TCGGCTATTAGGCC
*
29085245 CTATCACA
1 CTTTCACA
29085253 CATATACACT
Statistics
Matches: 83, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
78 7 0.08
79 76 0.92
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.31
Consensus pattern (78 bp):
CTTTCACATTCATCACATCGGCTATTAGGCCCTATCACACACATACACTTTCACATTCATCACGT
CGGCTATTAGGCC
Found at i:29085218 original size:47 final size:47
Alignment explanation
Indices: 29085167--29085719 Score: 917
Period size: 47 Copynumber: 11.7 Consensus size: 47
29085157 TATTAGGCCT
*
29085167 CTTTCACATTCATCACATCGGCTATTAGGCCCTATCACACATATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
* *
29085214 CTTTCACATTCATCACGTCGGCTATTAGGCCCTATCACACATATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
* *
29085261 CTTTCACATTCATCACGTCGGCTATTAGGCCCTATCACACATATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
*
29085308 CTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
*
29085355 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
* *
29085402 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACACATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
*
29085449 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACACATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
29085496 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
* **
29085543 CTTTCACATTCATCAGATCGGCTATTAGGCCTTATCACGTATATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
**
29085590 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACGTATATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
* * *
29085637 CTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ACATATACA
*
29085686 CTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTTCACATTCATCACATCGGCTATTAGGCCTTA
29085720 CTATCATTTC
Statistics
Matches: 489, Mismatches: 15, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
47 448 0.92
49 41 0.08
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
Found at i:29091701 original size:47 final size:47
Alignment explanation
Indices: 29091647--29092084 Score: 642
Period size: 47 Copynumber: 9.2 Consensus size: 47
29091637 AATTCTAAAT
*
29091647 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGTAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
29091694 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
29091741 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
29091789 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
29091838 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
29091885 TGCGATAAGGCCTAATAGCGCGATGTGATGAATGTGAAAGTATATATATA
1 TGTGATAAGGCCTAATGGC-CGATGTGATGAATGTGAAAG--TGTATATA
* *
29091935 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
29091982 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
29092029 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
29092076 TGTGATAAG
1 TGTGATAAG
29092085 TCCCGAAGGG
Statistics
Matches: 354, Mismatches: 31, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
47 201 0.57
48 65 0.18
49 66 0.19
50 22 0.06
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:29091909 original size:144 final size:141
Alignment explanation
Indices: 29091647--29092084 Score: 678
Period size: 144 Copynumber: 3.1 Consensus size: 141
29091637 AATTCTAAAT
*
29091647 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGTAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
29091712 CCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTG
66 CCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAGGGCCTAATGGCCGATGTGATGAATGTG
29091777 AAAGTGTATATA
130 AAAGTGTATATA
29091789 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCTTAAT
* * * *
29091854 GGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAGCGCGATGTGATGAATG
64 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGC-CGATGTGATGAATG
*
29091919 TGAAAGTATATATATA
128 TGAAAG--TGTATATA
* **
29091935 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
* * * * *
29092000 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
* *
29092065 AAGTGCATAAA
131 AAGTGTATATA
29092076 TGTGATAAG
1 TGTGATAAG
29092085 TCCCGAAGGG
Statistics
Matches: 270, Mismatches: 21, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
141 14 0.05
142 40 0.15
143 31 0.11
144 138 0.51
146 47 0.17
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (141 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATA
Found at i:29092271 original size:37 final size:37
Alignment explanation
Indices: 29092202--29092280 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
29092192 TCGAGCTCTA
* * *
29092202 AAGACCCGATGACTACATGTGTGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGTGGATTATGTCCAGGT
* *
29092239 AAGACCCGATAACTTCGTGTG-GAGATTATGTCCAGGT
1 AAGACCCGATAACTACATGTGTG-GATTATGTCCAGGT
29092276 AAGAC
1 AAGAC
29092281 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 1 0.03
37 35 0.97
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGTGGATTATGTCCAGGT
Found at i:29094190 original size:43 final size:43
Alignment explanation
Indices: 29094142--29094330 Score: 342
Period size: 43 Copynumber: 4.4 Consensus size: 43
29094132 TTGGTTTTCA
*
29094142 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
*
29094185 GCACTAAGTGTGCGGGCAATCAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
29094228 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
* *
29094271 GCACTAAGTGTGCGGGCAATAAGTATTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
29094314 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
29094331 TTGAAATGCA
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 141 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
Found at i:29094345 original size:29 final size:29
Alignment explanation
Indices: 29094312--29094385 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
29094302 GTTGTGAGAT
* *
29094312 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
29094341 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
29094370 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
29094386 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:29094723 original size:40 final size:40
Alignment explanation
Indices: 29094679--29094946 Score: 233
Period size: 40 Copynumber: 6.7 Consensus size: 40
29094669 CATTTGAATG
*
29094679 ATATCCGGGCTAAGTCCCGAAGGCAATT-GAGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGA-T
* * * *
29094719 ATATCCGGGCTAAGACCCGAAGGC-ATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGC-TAGTGAT
* *
29094759 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAG-TGAT
* * * *
29094799 ATATCCGGGCTAAGACCCGAAGGC-ATTGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGA-T
* * * *
29094839 AAATCCGGGCTAAATTCCGAAGAGC-ATTCGTGCTAGTGAG
1 ATATCCGGGCTAAGTCCCGAAG-GCAATTCGTGCTAGTGAT
* * * * * *
29094879 GTATCTGGACTAAGTTCCGAAGAGC-ATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAG-GCAATTCGTGCTAGTGAT
*
29094919 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAAT
29094947 CATACTGGTG
Statistics
Matches: 192, Mismatches: 28, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
39 10 0.05
40 160 0.83
41 22 0.11
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGAT
Found at i:29094812 original size:80 final size:80
Alignment explanation
Indices: 29094679--29094851 Score: 260
Period size: 80 Copynumber: 2.2 Consensus size: 80
29094669 CATTTGAATG
* *
29094679 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGAGCAAGTGATTATATCCGGGCTAAGACCCGAAGGCA
*
29094744 TTTGTGCGAATTGA-T
66 TTGGTGCGAATT-ACT
*
29094759 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGAGCAAG-TGATTATATCCGGGCTAAGACCCGAAGGC
*
29094823 ATTGGTGCGAGTTACT
65 ATTGGTGCGAATTACT
*
29094839 AAATCCGGGCTAA
1 ATATCCGGGCTAA
29094852 ATTCCGAAGA
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
79 1 0.01
80 81 0.95
81 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGAGCAAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTGGTGCGAATTACT
Found at i:29094892 original size:120 final size:120
Alignment explanation
Indices: 29094679--29094946 Score: 267
Period size: 120 Copynumber: 2.2 Consensus size: 120
29094669 CATTTGAATG
* * *
29094679 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTGACTAAATCCGGGCTAAGACCCGAAGGCA
* * * * *
29094744 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG-GCAATT-GTGCAAGTTGAT
66 TTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGC-ATTCGTGC-AGGTGAT
* * * *
29094799 ATATCCGGGCTAAGACCCGAAGGC-ATTGGTGCGAGTTACTAAATCCGGGCTAA-ATTCCGAAGA
1 ATATCCGGGCTAAGTCCCGAAGGCAATT-GAGCGAGTGACTAAATCCGGGCTAAGA-CCCGAAG-
* * * ** * *
29094862 GCATTCGTGC-TAGTGAGGTATCTGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTT
63 GCATTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGCATTCGTGCAGGTGAT
*
29094919 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAAT
29094947 CATACTGGTG
Statistics
Matches: 120, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
119 4 0.03
120 97 0.81
121 17 0.14
122 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTGACTAAATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGCATTCGTGCAGGTGAT
Found at i:29098336 original size:47 final size:47
Alignment explanation
Indices: 29098283--29098719 Score: 667
Period size: 47 Copynumber: 9.2 Consensus size: 47
29098273 AATTCTAAAT
29098283 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
29098330 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
29098377 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
29098425 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
29098474 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
29098521 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
29098570 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
29098617 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
29098664 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
29098711 TGTGATAAG
1 TGTGATAAG
29098720 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 28, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 223 0.62
48 45 0.13
49 89 0.25
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:29098530 original size:96 final size:94
Alignment explanation
Indices: 29098283--29098719 Score: 667
Period size: 96 Copynumber: 4.6 Consensus size: 94
29098273 AATTCTAAAT
*
29098283 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
29098348 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
*
29098377 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
29098442 GCCGATGTGATGAATGTGAAAGTGTATATATA
65 GCCGATGTGATGAATGTGAAAGTG--TATATA
* * * *
29098474 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
29098539 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
* ** *
29098570 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
29098635 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
29098664 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
29098720 TCCCGAAGGG
Statistics
Matches: 318, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 55 0.17
95 82 0.26
96 171 0.54
97 10 0.03
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (94 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATA
Found at i:29098625 original size:143 final size:142
Alignment explanation
Indices: 29098283--29098719 Score: 700
Period size: 143 Copynumber: 3.1 Consensus size: 142
29098273 AATTCTAAAT
29098283 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
29098348 CCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTG
66 CCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAGGGCCTAATGGCCGATGTGATGAATGTG
29098413 AAAGTG-TATATA
130 AAAGTGATATATA
29098425 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCTTAAT
* * * *
29098490 GGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGT
64 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGT
29098555 GAAAGTGTATATATA
129 GAAAGTG-ATATATA
* **
29098570 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
* * * * *
29098635 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
29098700 AAGTGCATA-A-A
131 AAGTG-ATATATA
29098711 TGTGATAAG
1 TGTGATAAG
29098720 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 17, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
141 10 0.04
142 42 0.15
143 121 0.44
144 55 0.20
145 46 0.17
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (142 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGATATATA
Found at i:29098893 original size:37 final size:37
Alignment explanation
Indices: 29098837--29098915 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
29098827 TCGAGCTCTA
* * * *
29098837 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
*
29098874 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
29098911 AAGAC
1 AAGAC
29098916 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:29101206 original size:48 final size:47
Alignment explanation
Indices: 29101047--29101209 Score: 156
Period size: 48 Copynumber: 3.5 Consensus size: 47
29101037 TTATAAGATT
* * **
29101047 ATATCTGGGATATGGCATTGGCATCGATATGTGTTATCATGTAAGACC
1 ATATCTGGGATATGGCATTGGCATCGAT-GGTGATCCCATGTAAGACC
* *
29101095 ATATCTGGGATATGGCGTT-G-AT--AT-GAGATCCCATGTAAGACC
1 ATATCTGGGATATGGCATTGGCATCGATGGTGATCCCATGTAAGACC
* * * * *
29101137 ATGTTTGGGACACGTCATTGGCATCGAGTGGTGATCCCATGTAAGACC
1 ATATCTGGGATATGGCATTGGCATCGA-TGGTGATCCCATGTAAGACC
* *
29101185 ATATCCGGGATATGGCGTTGGCATC
1 ATATCTGGGATATGGCATTGGCATC
29101210 TTATTATGGG
Statistics
Matches: 90, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
42 27 0.30
43 1 0.01
44 4 0.04
46 3 0.03
47 2 0.02
48 53 0.59
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (47 bp):
ATATCTGGGATATGGCATTGGCATCGATGGTGATCCCATGTAAGACC
Found at i:29103478 original size:33 final size:33
Alignment explanation
Indices: 29103441--29103511 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
29103431 AATGAGCGTA
29103441 TGAACGATATTATGGTCAATGAGAATGACATTG
1 TGAACGATATTATGGTCAATGAGAATGACATTG
29103474 TGAACGATATTATGGTCAATGAGAATGACATTG
1 TGAACGATATTATGGTCAATGAGAATGACATTG
29103507 TGAAC
1 TGAAC
29103512 TAGTTAGACG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.30
Consensus pattern (33 bp):
TGAACGATATTATGGTCAATGAGAATGACATTG
Found at i:29105077 original size:20 final size:20
Alignment explanation
Indices: 29105052--29105099 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
29105042 CGGGATGAGG
29105052 ACACGGGCGTGTCCCAAGTC
1 ACACGGGCGTGTCCCAAGTC
*
29105072 ACACGGGTGTGTCCCAAGTC
1 ACACGGGCGTGTCCCAAGTC
29105092 ACACGGGC
1 ACACGGGC
29105100 CTACCCACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.21, C:0.33, G:0.31, T:0.15
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGTC
Found at i:29107211 original size:6 final size:6
Alignment explanation
Indices: 29107181--29107423 Score: 162
Period size: 6 Copynumber: 39.3 Consensus size: 6
29107171 AAGAAACATT
* * *
29107181 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAAA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
29107228 GTGACAGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
29107279 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCA-A TATCAGGTA A-CAGA ATCAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA -ATCA-G-A ATCAGA ATCAGA
* * * *
29107329 ATCAG- AGCTAGA ATCAGA ATTAGGTA A-CAAA ATCAGA ATCAGT ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
* *
29107378 TAACAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 -ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
29107424 GTGAATGCAA
Statistics
Matches: 186, Mismatches: 26, Indels: 50
0.71 0.10 0.19
Matches are distributed among these distances:
5 15 0.08
6 139 0.75
7 23 0.12
8 8 0.04
9 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:29107237 original size:19 final size:19
Alignment explanation
Indices: 29107213--29107370 Score: 88
Period size: 19 Copynumber: 8.8 Consensus size: 19
29107203 GAATCAGAAT
*
29107213 CAGAATCAAAATCAGGTGA
1 CAGAATCAAAATCAGGTAA
29107232 CAGAATCAAAATCA-G-AA
1 CAGAATCAAAATCAGGTAA
* *
29107249 TCAGAATCAGAATTAGGTAA
1 -CAGAATCAAAATCAGGTAA
* *
29107269 CAGAATCAGAATCA-GTAT
1 CAGAATCAAAATCAGGTAA
*
29107287 CAG-GT---AA-CA-G-AA
1 CAGAATCAAAATCAGGTAA
*
29107299 TCAGAATCAATATCAGGTAA
1 -CAGAATCAAAATCAGGTAA
* *
29107319 CAGAATCAGAATCA-G-AG
1 CAGAATCAAAATCAGGTAA
* *
29107336 CTAGAATCAGAATTAGGTAA
1 C-AGAATCAAAATCAGGTAA
* *
29107356 CAAAATCAGAATCAG
1 CAGAATCAAAATCAG
29107371 TATCAGATAA
Statistics
Matches: 109, Mismatches: 16, Indels: 28
0.71 0.10 0.18
Matches are distributed among these distances:
12 1 0.01
13 6 0.06
14 3 0.03
17 5 0.05
18 34 0.31
19 54 0.50
20 6 0.06
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (19 bp):
CAGAATCAAAATCAGGTAA
Found at i:29107254 original size:37 final size:37
Alignment explanation
Indices: 29107204--29107289 Score: 127
Period size: 37 Copynumber: 2.3 Consensus size: 37
29107194 TCAAAATGAG
*
29107204 AATCAGAATCAGAATCAAAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAAAATCAGGTAACAGAATCAA
* * *
29107241 AATCAGAATCAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAGAATCAGAATCAAAATCAGGTAACAGAATCAA
*
29107278 AATCAGTATCAG
1 AATCAGAATCAG
29107290 GTAACAGAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (37 bp):
AATCAGAATCAGAATCAAAATCAGGTAACAGAATCAA
Found at i:29107272 original size:25 final size:25
Alignment explanation
Indices: 29107244--29107334 Score: 148
Period size: 25 Copynumber: 3.6 Consensus size: 25
29107234 GAATCAAAAT
*
29107244 CAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
29107269 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
29107294 CAGAATCAGAATCA-ATATCAGGTAA
1 CAGAATCAGAATCAGA-ATCAGGTAA
29107319 CAGAATCAGAATCAGA
1 CAGAATCAGAATCAGA
29107335 GCTAGAATCA
Statistics
Matches: 61, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
25 60 0.98
26 1 0.02
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:29107314 original size:62 final size:60
Alignment explanation
Indices: 29107202--29107414 Score: 209
Period size: 62 Copynumber: 3.4 Consensus size: 60
29107192 AATCAAAATG
* * * *
29107202 AGAATCAGAATCAGAATCAAAATCAGGTGACAGAATCAAAATCAGA-ATCAGAATCAGAATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAGAATCA-ATATCAGAA-CAGAATC
*
29107263 AGGTAA-CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAATATCAGGTAACAGAATC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAGAATCAATATCA-G-AACAGAATC
* * * *
29107326 AGAATCAG-AGCTAGAATCAGAATTAGGTAACAAAATCAGAATCAGTATCAGATAACAGAATC
1 AGAATCAGAATC-AGAATCAGAATCAGGTAACAGAATCAGAATCAATATCAG--AACAGAATC
*
29107388 AGAATCAGTATCAGGTAA-CAGAATCAG
1 AGAATCAGAATCA-G-AATCAGAATCAG
29107415 AATCAGAATG
Statistics
Matches: 129, Mismatches: 12, Indels: 20
0.80 0.07 0.12
Matches are distributed among these distances:
61 7 0.05
62 97 0.75
63 21 0.16
64 4 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (60 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAGAATCAATATCAGAACAGAATC
Found at i:29107332 original size:87 final size:88
Alignment explanation
Indices: 29107207--29107423 Score: 357
Period size: 87 Copynumber: 2.5 Consensus size: 88
29107197 AAATGAGAAT
* * *
29107207 CAGAATCAGAATCAAAATCAGGTGACAGAATCAAAATCAGAATC-AGAATCAGAATTAGGTAACA
1 CAGAATCAGAATCAATATCAGGTAACAGAATCAGAATCAGAATCTAGAATCAGAATTAGGTAACA
* *
29107271 GAATCAGAATCAGTATCAGGTAA
66 AAATCAGAATCAGTATCAGATAA
*
29107294 CAGAATCAGAATCAATATCAGGTAACAGAATCAGAATCAG-AGCTAGAATCAGAATTAGGTAACA
1 CAGAATCAGAATCAATATCAGGTAACAGAATCAGAATCAGAATCTAGAATCAGAATTAGGTAACA
29107358 AAATCAGAATCAGTATCAGATAA
66 AAATCAGAATCAGTATCAGATAA
*
29107381 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAATATCAGGTAACAGAATCAGAATCAGAAT
29107424 GTGAATGCAA
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
86 2 0.02
87 117 0.98
88 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (88 bp):
CAGAATCAGAATCAATATCAGGTAACAGAATCAGAATCAGAATCTAGAATCAGAATTAGGTAACA
AAATCAGAATCAGTATCAGATAA
Found at i:29107368 original size:25 final size:25
Alignment explanation
Indices: 29107338--29107423 Score: 127
Period size: 25 Copynumber: 3.4 Consensus size: 25
29107328 AATCAGAGCT
* *
29107338 AGAATCAGAATTAGGTAACAAAATC
1 AGAATCAGAATCAGGTAACAGAATC
* *
29107363 AGAATCAGTATCAGATAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
*
29107388 AGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
29107413 AGAATCAGAAT
1 AGAATCAGAAT
29107424 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGGTAACAGAATC
Found at i:29107868 original size:27 final size:27
Alignment explanation
Indices: 29107838--29108088 Score: 242
Period size: 27 Copynumber: 9.3 Consensus size: 27
29107828 GGGGTAAAAT
* *
29107838 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
29107865 GGTAATTCTACCTTAC-AGGAATATTTT
1 GGTAATTTTACCCTACAAGG-GTATTTC
* * *
29107892 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
29107919 GATAATTCTA-CCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
29107945 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
29107972 AGTAATTTTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
29107999 AGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
29108026 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
29108053 GG-CATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
29108080 GATAATTTT
1 GGTAATTTT
29108089 GTAAATCGAG
Statistics
Matches: 192, Mismatches: 26, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
26 31 0.16
27 155 0.81
28 6 0.03
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:29107970 original size:80 final size:81
Alignment explanation
Indices: 29107840--29108086 Score: 329
Period size: 81 Copynumber: 3.1 Consensus size: 81
29107830 GGTAAAATGG
* * * * *
29107840 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTAC-AGGAATATTTTAGTAATTCTACC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTTAGTAATTCTACC
29107904 CTACAGGGGTATTTCGA
65 CTACAGGGGTATTTCGA
*
29107921 TAATTCTA-CCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTTTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
*
29107985 TACAGGGGTATTT-TA
66 TACAGGGGTATTTCGA
* * * * * *
29108000 GTATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTGGCATTTCTACC
1 -TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACC
*
29108065 CTACAAGGGTATTTCGA
65 CTACAGGGGTATTTCGA
29108082 TAATT
1 TAATT
29108087 TTGTAAATCG
Statistics
Matches: 145, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
79 1 0.01
80 67 0.46
81 76 0.52
82 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
TACAGGGGTATTTCGA
Found at i:29108015 original size:107 final size:108
Alignment explanation
Indices: 29107838--29108079 Score: 342
Period size: 107 Copynumber: 2.2 Consensus size: 108
29107828 GGGGTAAAAT
* * * * *
29107838 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAATATTTTAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGAATATTTTAGTAATTCTAC
29107903 CCTACAGGGGTATTTCGATAATTCTA-CCTACAAGGGTATTTC
66 CCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTC
* * ** *
29107945 GGTAATTCTACCCTACAAGGGTATTTTAGTAATTTTACCCTACAGGGGTATTTTAGTATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGAATATTTTAGTAATTCTAC
* * *
29108010 CCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTT
66 CCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTC
* *
29108053 GGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
29108080 GATAATTTTG
Statistics
Matches: 118, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
107 79 0.67
108 39 0.33
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (108 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGAATATTTTAGTAATTCTAC
CCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTC
Found at i:29108102 original size:54 final size:55
Alignment explanation
Indices: 29107837--29108087 Score: 275
Period size: 54 Copynumber: 4.7 Consensus size: 55
29107827 AGGGGTAAAA
* * * * *
29107837 TGGTAATTT-TACCCCACAAGGGTATCTCGGTAA-TTCTACCTTAC-AGGAATATTT
1 TGGT-ATTTCTACCCTACAAGGGTATTTCGATAATTTCTACCCTACAAGG-GTATTT
* * *
29107891 TAGTAATTCTACCCTACAGGGGTATTTCGATAA-TTCTA-CCTACAAGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCGATAATTTCTACCCTACAAGGGTATTT
* * * *
29107944 CGGTAATTCTACCCTACAAGGGTATTT-TAGTAATTT-TACCCTACAGGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCGA-TAATTTCTACCCTACAAGGGTATTT
* * *
29107998 TAGTATTTCTACCCTACAGGGGTATTTCGGT-ATTTCTACCCTACAAGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCGATAATTTCTACCCTACAAGGGTATTT
*
29108052 TGGCATTTCTACCCTACAAGGGTATTTCGATAATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCGATAATTT
29108088 TGTAAATCGA
Statistics
Matches: 165, Mismatches: 24, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
52 1 0.01
53 45 0.27
54 115 0.70
55 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (55 bp):
TGGTATTTCTACCCTACAAGGGTATTTCGATAATTTCTACCCTACAAGGGTATTT
Found at i:29108166 original size:27 final size:27
Alignment explanation
Indices: 29108136--29108195 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
29108126 AGTACTTTGG
29108136 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
29108163 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
29108190 TAATTT
1 TAATTT
29108196 CAGAAATCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:29108179 original size:81 final size:80
Alignment explanation
Indices: 29108070--29108255 Score: 196
Period size: 81 Copynumber: 2.3 Consensus size: 80
29108060 CTACCCTACA
** * *
29108070 AGGGTATTTCGATAATTTTGTAAATCGAGGGTAAAACGGTAA-TTCTATAAATCAATA-GTACTT
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTAAAACAGTAATTTC-AGAAATCAA-AGGTACTT
*
29108133 TGGTAATTTTACAAGTCG
64 TGGTAATTTTACAA-ACG
* ** *** *
29108151 AGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCAGAAATCAAAGGTATTTTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTAAAACAGTAATTTCAGAAATCAAAGGTACTTTG
*
29108216 GTAATTTTACAAACT
66 GTAATTTTACAAACG
*
29108231 AGGGGTATTTTGATAATTTTACAAA
1 A-GGGTATTTCGATAATTTTACAAA
29108256 CTAGGGGTAT
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
80 3 0.04
81 79 0.93
82 3 0.04
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.37
Consensus pattern (80 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTAAAACAGTAATTTCAGAAATCAAAGGTACTTTG
GTAATTTTACAAACG
Found at i:29108237 original size:54 final size:54
Alignment explanation
Indices: 29108179--29108517 Score: 407
Period size: 54 Copynumber: 6.3 Consensus size: 54
29108169 TACAGGTCGA
** * * *
29108179 GGGTATTTCAGTAATTTCAGAAATCAAAGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTAGAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* * * *
29108233 GGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTAGAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* * ** *
29108287 GGGTATTTTGGTAATTTTATAAACCAATGGTATTTTACTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTAGAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* *
29108341 GGGTATTTTGGTAATTTT-GTAAACCAAGGGTA-TTTGATAATTTTATAAACTAG
1 GGGTATTTTGGTAATTTTAG-AAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* *
29108394 GGGTATTTTGGTAATTTT-GTAAACCAAGGGTATTTTGGTAATTTTACAAACAAA
1 GGGTATTTTGGTAATTTTAG-AAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* * ** * *
29108448 GGGTATTTTGGTGATTTTATAAACCAAAAG-ATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTAGAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
*
29108501 TGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
29108518 GGTAAACTAA
Statistics
Matches: 246, Mismatches: 36, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
53 84 0.34
54 162 0.66
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTAGAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
Found at i:29108428 original size:107 final size:107
Alignment explanation
Indices: 29108207--29108524 Score: 422
Period size: 107 Copynumber: 3.0 Consensus size: 107
29108197 AGAAATCAAA
* * * * * *
29108207 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGGTAATTTTATAAACCAAGGGTA-TTTGAT
* *
29108272 AATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAT
65 AATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAG
** * *
29108315 GGTATTTTACTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTGATA
1 GGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTGATA
*
29108380 ATTTTATAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAG
66 ATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAG
* * ** *
29108422 GGTATTTTGGTAATTTTACAAACAAAGGGTATTTTGGTGATTTTATAAACCAAAAG-ATTTTAGT
1 GGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTGA-T
* * *
29108486 AATTTTACAAACCAGTGGTATTTTGGTAATTTGGTAAAC
65 AATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
29108525 TAAAGTATTC
Statistics
Matches: 184, Mismatches: 25, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
106 5 0.03
107 129 0.70
108 50 0.27
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (107 bp):
GGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTGATA
ATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAG
Found at i:29108524 original size:27 final size:27
Alignment explanation
Indices: 29108207--29108517 Score: 365
Period size: 27 Copynumber: 11.6 Consensus size: 27
29108197 AGAAATCAAA
*
29108207 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* *
29108234 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
29108261 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* **
29108288 GGTATTTTGGTAATTTTATAAACCAAT
1 GGTATTTTGGTAATTTTACAAACCAGG
**
29108315 GGTATTTTACTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
** *
29108342 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
29108369 GGTA-TTTGATAATTTTATAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
** *
29108395 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
* *
29108422 GGTATTTTGGTAATTTTACAAACAAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * **
29108449 GGTATTTTGGTGATTTTATAAACCAAA
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
29108476 AG-ATTTTAGTAATTTTACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACCAGG
29108502 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
29108518 GGTAAACTAA
Statistics
Matches: 243, Mismatches: 39, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 42 0.17
27 201 0.83
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:29110554 original size:6 final size:6
Alignment explanation
Indices: 29110498--29110644 Score: 104
Period size: 6 Copynumber: 23.8 Consensus size: 6
29110488 AAACATTATT
* * * * * *
29110498 AGAATT AGAATC AAAATG AGAATC AAAATC AGGTAA-C AAAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * *
29110547 AGAATC AGAATT AGAATT AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC
*
29110597 AGAATC AGAATC AGAATC AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
29110645 GTGAATGCAA
Statistics
Matches: 114, Mismatches: 15, Indels: 24
0.75 0.10 0.16
Matches are distributed among these distances:
5 8 0.07
6 90 0.79
7 10 0.09
8 6 0.05
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:29110574 original size:25 final size:25
Alignment explanation
Indices: 29110546--29110641 Score: 124
Period size: 25 Copynumber: 3.8 Consensus size: 25
29110536 AAATCAAAAT
* *
29110546 CAGAATCAGAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
29110571 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
29110596 CAGAATCAGAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGAATCAGGTAA
29110620 CAGGTAA-CAGAATCAGAATCAG
1 CA-G-AATCAGAATCAGAATCAG
29110642 AATGTGAATG
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.08
25 56 0.89
26 2 0.03
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:29110578 original size:31 final size:30
Alignment explanation
Indices: 29110543--29110644 Score: 133
Period size: 31 Copynumber: 3.5 Consensus size: 30
29110533 ACAAAATCAA
*
29110543 AATCAGAATCAGAATTAGAATTAGGTAACAG
1 AATCAGAATCAGAATTAG-ATCAGGTAACAG
29110574 AATCAGAATCAG---T--ATCAGGTAACAG
1 AATCAGAATCAGAATTAGATCAGGTAACAG
*
29110599 AATCAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATTAG-ATCAGGTAACAG
29110630 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
29110645 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 2, Indels: 12
0.82 0.03 0.16
Matches are distributed among these distances:
25 23 0.37
28 1 0.02
31 39 0.62
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.21
Consensus pattern (30 bp):
AATCAGAATCAGAATTAGATCAGGTAACAG
Found at i:29110585 original size:37 final size:37
Alignment explanation
Indices: 29110498--29110641 Score: 107
Period size: 37 Copynumber: 3.9 Consensus size: 37
29110488 AAACATTATT
* * *
29110498 AGAATTAGAATCAAAATGAGAATCAAAATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAAAATCAGGTAAC
* * * * *
29110535 AAAATCAAAATCAGAATCAGAATTAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAAAATCAGGTAAC
* *
29110572 AGAATCAGAATCAGTATCAGGTAA-CAGAATCA-G-AATC
1 AGAATCAGAATCAGAATCA-G-AATCAAAATCAGGTAA-C
* *
29110609 AGAATCAGTATCAGGTAA-CAGAATCAGAATCAG
1 AGAATCAGAATCA-G-AATCAGAATCAAAATCAG
29110642 AATGTGAATG
Statistics
Matches: 85, Mismatches: 15, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
36 4 0.05
37 68 0.80
38 10 0.12
39 3 0.04
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAAAATCAGGTAAC
Found at i:29111252 original size:107 final size:108
Alignment explanation
Indices: 29111074--29111298 Score: 344
Period size: 107 Copynumber: 2.1 Consensus size: 108
29111064 TTTACCCCAT
* *
29111074 AAGGGTATCTTAGTAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTACAGGAGTATTTC
1 AAGGGTATTTTAGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGAGTATTTC
*
29111139 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTAC
66 GGTATTTCTACCCTACAAGGGTATTTCGACAATTCTACCCTAC
* * * * * *
29111182 AGGGGTATTTTAGTAATTCTACCCTA-TGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTC
1 AAGGGTATTTTAGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGAGTATTTC
* *
29111246 GGTATTTCTACCCTACAAGGGTATTTCGGCATTTCTACCCTAC
66 GGTATTTCTACCCTACAAGGGTATTTCGACAATTCTACCCTAC
29111289 AAGGGTATTT
1 AAGGGTATTT
29111299 CGGTAATTTG
Statistics
Matches: 105, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
107 82 0.78
108 23 0.22
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (108 bp):
AAGGGTATTTTAGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGAGTATTTC
GGTATTTCTACCCTACAAGGGTATTTCGACAATTCTACCCTAC
Found at i:29111299 original size:27 final size:27
Alignment explanation
Indices: 29111090--29111303 Score: 272
Period size: 27 Copynumber: 8.0 Consensus size: 27
29111080 ATCTTAGTAA
* * *
29111090 TTCTACCTTAC-AGGAGTATTTCAGTAA
1 TTCTACCCTACAAGG-GTATTTCGGTAT
29111117 TTCTACCCTAC-AGGAGTATTTCGGTAT
1 TTCTACCCTACAAGG-GTATTTCGGTAT
* *
29111144 TTCTACCCTACAAGGGTATTTCGATAA
1 TTCTACCCTACAAGGGTATTTCGGTAT
* ** *
29111171 TTCTACCCTACAGGGGTATTTTAGTAA
1 TTCTACCCTACAAGGGTATTTCGGTAT
**
29111198 TTCTACCCTA-TGGGGTATTTCGGTAT
1 TTCTACCCTACAAGGGTATTTCGGTAT
*
29111224 TTCTACCCTACAGGGGTATTTCGGTAT
1 TTCTACCCTACAAGGGTATTTCGGTAT
*
29111251 TTCTACCCTACAAGGGTATTTCGGCAT
1 TTCTACCCTACAAGGGTATTTCGGTAT
29111278 TTCTACCCTACAAGGGTATTTCGGTA
1 TTCTACCCTACAAGGGTATTTCGGTA
29111304 ATTTGTAAAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 22 0.13
27 143 0.85
28 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
TTCTACCCTACAAGGGTATTTCGGTAT
Found at i:29111299 original size:54 final size:54
Alignment explanation
Indices: 29111058--29111303 Score: 275
Period size: 54 Copynumber: 4.6 Consensus size: 54
29111048 GGGGTAAAAT
* * * * * *
29111058 GGTAATTTTACCCCATAAGGGTATCTT-AGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTAT-TTCGGTATTTCTACCCTACAAGG-GTATTTC
*
29111112 AGTAATTCTACCCTAC-AGGAGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* * ** * **
29111166 GATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTA-TGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* *
29111219 GGTATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* *
29111273 GGCATTTCTACCCTACAAGGGTATTTCGGTA
1 GGTAATTCTACCCTACAAGGGTATTTCGGTA
29111304 ATTTGTAAAT
Statistics
Matches: 163, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
53 51 0.31
54 107 0.66
55 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
Found at i:29111321 original size:80 final size:79
Alignment explanation
Indices: 29111087--29111303 Score: 238
Period size: 80 Copynumber: 2.7 Consensus size: 79
29111077 GGTATCTTAG
* * * *
29111087 TAATTCTACCTTAC-AGGAGTATTTCAGTAATTCTACCCTACAGGAGTATTTCGGTATTTCTACC
1 TAATTCTACCCTACAAGG-GTATTTCAGCAATTCTACCCTAAAGG-GTATTTCGGTATTTCTACA
*
29111151 CTACAAGGGTATTTCGA
64 ATAC-AGGGTATTTCGA
* * * ** **
29111168 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATGGGGTATTTCGGTATTTCTACCCT
1 TAATTCTACCCTACAAGGGTATTTCAGCAATTCTACCCTAAAGGGTATTTCGGTATTTCTACAAT
*
29111233 ACAGGGGTATTTCGG
66 ACA-GGGTATTTCGA
* * *
29111248 TATTTCTACCCTACAAGGGTATTTCGGCATTTCTACCCTACAAGGGTATTTCGGTA
1 TAATTCTACCCTACAAGGGTATTTCAGCAATTCTACCCTA-AAGGGTATTTCGGTA
29111304 ATTTGTAAAT
Statistics
Matches: 119, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.01
80 67 0.56
81 49 0.41
82 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.36
Consensus pattern (79 bp):
TAATTCTACCCTACAAGGGTATTTCAGCAATTCTACCCTAAAGGGTATTTCGGTATTTCTACAAT
ACAGGGTATTTCGA
Found at i:29111329 original size:107 final size:107
Alignment explanation
Indices: 29111113--29111334 Score: 286
Period size: 107 Copynumber: 2.1 Consensus size: 107
29111103 GAGTATTTCA
*
29111113 GTAATTCTACCCTACAGGAGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
1 GTAATTCTACCCTACAGGAGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGACAATTCTACC
* * ** ***
29111178 CTACAGGGGTATTTTAGTAATTCTACCCTATGGGGTATTTCG
66 CTACAAGGGTATTTCAGTAATTCTACAATATGGGGTAAAACG
* * * *
29111220 GTATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGCATTTCTACC
1 GTAATTCTACCCTACAGGAGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGACAATTCTACC
* *
29111285 CTACAAGGGTATTTCGGTAATTTGTA-AAT-TGAGGGTAAAACG
66 CTACAAGGGTATTTCAGTAA-TTCTACAATATG-GGGTAAAACG
29111327 GTAATTCT
1 GTAATTCT
29111335 GTAAATCAAT
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
106 2 0.02
107 92 0.94
108 4 0.04
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (107 bp):
GTAATTCTACCCTACAGGAGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGACAATTCTACC
CTACAAGGGTATTTCAGTAATTCTACAATATGGGGTAAAACG
Found at i:29111555 original size:27 final size:27
Alignment explanation
Indices: 29111345--29111846 Score: 576
Period size: 27 Copynumber: 18.6 Consensus size: 27
29111335 GTAAATCAAT
* ** *
29111345 GGTACTTT-GTAATTTTACAAGTCGAG
1 GGTATTTTGGTAATTTTACAAACCAAG
*** ** *
29111371 GGTATTTCAATAATTTTACAAGTCGAG
1 GGTATTTTGGTAATTTTACAAACCAAG
** * * *
29111398 GGTATTTCAGTAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
* *
29111425 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
29111452 GGTATTTTGGTAATTTTACAAACC-AG
1 GGTATTTTGGTAATTTTACAAACCAAG
* *
29111478 TGGTATTTTGGTAATTTTACAAACTAGG
1 -GGTATTTTGGTAATTTTACAAACCAAG
* *
29111506 GGTATTTTGGTAATTTTATAAACCAAT
1 GGTATTTTGGTAATTTTACAAACCAAG
* *
29111533 GGTATTTTAGTAATTTTACAAACTAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
**
29111560 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
*
29111587 GGTATTTTGGTAATTTTACAAACTAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
* * *
29111614 GGTATTTTGGTGATTTTATAAACCAAT
1 GGTATTTTGGTAATTTTACAAACCAAG
*
29111641 GGTATTTTAGTAATTTTACAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
** * *
29111668 GGTATTTTGGTAATTTTGTAAACTAAT
1 GGTATTTTGGTAATTTTACAAACCAAG
*
29111695 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
* *
29111722 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
* *
29111749 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
* * *
29111776 GGTATTTTGATGATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
* * *
29111803 GGTATTTTAGTAATTTTACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
29111830 GGTATTTTGGTAATTTT
1 GGTATTTTGGTAATTTT
29111847 GTGAACTAAA
Statistics
Matches: 404, Mismatches: 69, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
26 7 0.02
27 396 0.98
28 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAAG
Found at i:29131763 original size:13 final size:13
Alignment explanation
Indices: 29131745--29131770 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29131735 AAATGAGAAG
29131745 TTTATAAGTCCTA
1 TTTATAAGTCCTA
29131758 TTTATAAGTCCTA
1 TTTATAAGTCCTA
29131771 ATCTGACTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTATAAGTCCTA
Found at i:29135146 original size:27 final size:27
Alignment explanation
Indices: 29135116--29135183 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 27
29135106 AATGTATAAA
*
29135116 AAATATATATTAAAATTA-TGTTATATT
1 AAATATATATTAAAA-TAGTATTATATT
*
29135143 AAATCT-TAATTAAAATAGTATTATATT
1 AAATATAT-ATTAAAATAGTATTATATT
29135170 AAA-ATAATATTAAA
1 AAATAT-ATATTAAA
29135184 GTGAGAGGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
26 4 0.12
27 29 0.85
28 1 0.03
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (27 bp):
AAATATATATTAAAATAGTATTATATT
Found at i:29135172 original size:16 final size:16
Alignment explanation
Indices: 29135112--29135181 Score: 55
Period size: 16 Copynumber: 4.8 Consensus size: 16
29135102 AATAAATGTA
29135112 TAAAA-AATA-TATAT
1 TAAAATAATATTATAT
* *
29135126 TAAAATTATGTTATAT
1 TAAAATAATATTATAT
*
29135142 T---A-AATCTTA-AT
1 TAAAATAATATTATAT
*
29135153 TAAAATAGTATTATAT
1 TAAAATAATATTATAT
29135169 TAAAATAATATTA
1 TAAAATAATATTA
29135182 AAGTGAGAGG
Statistics
Matches: 42, Mismatches: 7, Indels: 12
0.69 0.11 0.20
Matches are distributed among these distances:
11 3 0.07
12 5 0.12
13 1 0.02
14 6 0.14
15 7 0.17
16 20 0.48
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (16 bp):
TAAAATAATATTATAT
Found at i:29137681 original size:13 final size:13
Alignment explanation
Indices: 29137663--29137688 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29137653 TTGAATAAAA
29137663 TAAACTGGTGTAT
1 TAAACTGGTGTAT
29137676 TAAACTGGTGTAT
1 TAAACTGGTGTAT
29137689 GCACCCTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TAAACTGGTGTAT
Found at i:29137839 original size:25 final size:25
Alignment explanation
Indices: 29137805--29137852 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
29137795 GAAATTATGC
29137805 ATTTTAATAAACAAAACTTTCGTTA
1 ATTTTAATAAACAAAACTTTCGTTA
29137830 ATTTTAATAAACAAAACTTTCGT
1 ATTTTAATAAACAAAACTTTCGT
29137853 GCAACGAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.40
Consensus pattern (25 bp):
ATTTTAATAAACAAAACTTTCGTTA
Found at i:29139181 original size:3 final size:3
Alignment explanation
Indices: 29139173--29139197 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
29139163 TCCAGGTTCA
29139173 ACC ACC ACC ACC ACC ACC ACC ACC A
1 ACC ACC ACC ACC ACC ACC ACC ACC A
29139198 AAAACTGAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00
Consensus pattern (3 bp):
ACC
Found at i:29140553 original size:18 final size:18
Alignment explanation
Indices: 29140532--29140569 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
29140522 TAAACCAATT
*
29140532 TATGTAATAAA-ATTTAAA
1 TATGTAA-AAATATTAAAA
29140550 TATGTAAAAATATTAAAA
1 TATGTAAAAATATTAAAA
29140568 TA
1 TA
29140570 ATAGTTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
TATGTAAAAATATTAAAA
Found at i:29149739 original size:42 final size:42
Alignment explanation
Indices: 29149692--29149783 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
29149682 TGGCCCTTAG
** ** * *
29149692 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGTAA
1 GCCCATTTCAATATCACATAAAATACCAATGAATGTATGCAA
29149734 GCCCATTTCAATATCACATAAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATAAAATACCAATGAATGTATGCAA
29149776 GCCCATTT
1 GCCCATTT
29149784 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATAAAATACCAATGAATGTATGCAA
Found at i:29149959 original size:25 final size:25
Alignment explanation
Indices: 29149931--29150000 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
29149921 CTCTTTTAAT
*
29149931 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTC-GATA
*
29149956 AACTGGGGCAGAGCCCTTTTCGGTA
1 AACTGGGGCAGAGCCCTTTTCGATA
29149981 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
29150001 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTTCGATA
Found at i:29150870 original size:26 final size:26
Alignment explanation
Indices: 29150805--29150905 Score: 78
Period size: 27 Copynumber: 3.7 Consensus size: 26
29150795 GGCGTATTCA
29150805 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACC-TACAAGGGTATTACGG
* *
29150832 TCACTTTATCCTACAGGGGCT-TTACGG
1 TCATTTTA-CCTACAAGGG-TATTACGG
* * ***
29150859 TCTTTTTACCTATTAAGGGTATTTTAG
1 TCATTTTACCTA-CAAGGGTATTACGG
*
29150886 TCATTTCATCCTACAAGGGT
1 TCATTTTA-CCTACAAGGGT
29150906 GTTTTGGTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
26 5 0.09
27 45 0.79
28 7 0.12
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (26 bp):
TCATTTTACCTACAAGGGTATTACGG
Found at i:29150952 original size:27 final size:27
Alignment explanation
Indices: 29150926--29151056 Score: 88
Period size: 27 Copynumber: 4.7 Consensus size: 27
29150916 ATCTACAAAC
*
29150926 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
29150953 CAACGGTATTCCTA-TAATTTT-TAAAAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT---AAA-T
29150983 CAAGGGTATTTCTA-TAATTTTGTAAAT
1 CAAGGGTATTTC-AGTAATTTTGTAAAT
* * ** **
29151010 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
29151037 TAAGGGTATTTCGGTAATTT
1 CAAGGGTATTTCAGTAATTT
29151057 CTCAAACCAG
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
26 1 0.01
27 56 0.67
28 4 0.05
29 3 0.04
30 19 0.23
31 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:29151062 original size:27 final size:27
Alignment explanation
Indices: 29150984--29151056 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
29150974 TAAAAAAGTC
** **
29150984 AAGGGTATTTCTATAATTTTGTAAATT
1 AAGGGTATTTCGGTAATTTTACAAATT
* *
29151011 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAATT
29151038 AAGGGTATTTCGGTAATTT
1 AAGGGTATTTCGGTAATTT
29151057 CTCAAACCAG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAATT
Found at i:29152895 original size:45 final size:45
Alignment explanation
Indices: 29152843--29153029 Score: 232
Period size: 45 Copynumber: 4.2 Consensus size: 45
29152833 TACACATAAC
* ** *
29152843 CACATATATTAATGTTAACATCCCAGACGTGGTCTTACACAAAAA
1 CACATATATCAATGCCAACATCCCAGACGTGGTCTTACACGAAAA
* *
29152888 CACATATATCAATGCCAACGTCCTAGACGTGGTCTTACACGAAAA
1 CACATATATCAATGCCAACATCCCAGACGTGGTCTTACACGAAAA
* * **
29152933 CACATATAACGATGCCAATGTCCCAGACGTGGTCTTACACGAAAA
1 CACATATATCAATGCCAACATCCCAGACGTGGTCTTACACGAAAA
** * *
29152978 CACATATATTGATGCCAA-AGTCCCAGACGTTGTCTTACATGAAAA
1 CACATATATCAATGCCAACA-TCCCAGACGTGGTCTTACACGAAAA
29153023 CACATAT
1 CACATAT
29153030 CGAAATCCTA
Statistics
Matches: 126, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 126 1.00
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (45 bp):
CACATATATCAATGCCAACATCCCAGACGTGGTCTTACACGAAAA
Found at i:29152961 original size:90 final size:90
Alignment explanation
Indices: 29152863--29153029 Score: 271
Period size: 90 Copynumber: 1.9 Consensus size: 90
29152853 AATGTTAACA
* *
29152863 TCCCAGACGTGGTCTTACACAAAAACACATATATCAATGCCAACGTCCTAGACGTGGTCTTACAC
1 TCCCAGACGTGGTCTTACACAAAAACACATATATCAATGCCAAAGTCCCAGACGTGGTCTTACAC
29152928 GAAAACACATATAACGATGCCAATG
66 GAAAACACATATAACGATGCCAATG
* ** * *
29152953 TCCCAGACGTGGTCTTACACGAAAACACATATATTGATGCCAAAGTCCCAGACGTTGTCTTACAT
1 TCCCAGACGTGGTCTTACACAAAAACACATATATCAATGCCAAAGTCCCAGACGTGGTCTTACAC
29153018 GAAAACACATAT
66 GAAAACACATAT
29153030 CGAAATCCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 70 1.00
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (90 bp):
TCCCAGACGTGGTCTTACACAAAAACACATATATCAATGCCAAAGTCCCAGACGTGGTCTTACAC
GAAAACACATATAACGATGCCAATG
Found at i:29159909 original size:15 final size:15
Alignment explanation
Indices: 29159866--29159914 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
29159856 GGTATTGTAA
**
29159866 CTTGGATTTCTGAAT
1 CTTGGATTTCTTTAT
29159881 CTTGGGAGTTTCTTTAT
1 CTT-GGA-TTTCTTTAT
29159898 CTTGGATTTCTTTAT
1 CTTGGATTTCTTTAT
29159913 CT
1 CT
29159915 CAGACTTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 14 0.47
16 6 0.20
17 10 0.33
ACGTcount: A:0.14, C:0.14, G:0.18, T:0.53
Consensus pattern (15 bp):
CTTGGATTTCTTTAT
Found at i:29165772 original size:43 final size:43
Alignment explanation
Indices: 29165706--29165790 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
29165696 AAATCGTACA
** *
29165706 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAACGTCCCAGACAAGGTCTTAC-TCGTAAACACATATCG
29165749 ATGCC-ACTGTCCCAGACAAGGTCTTACTCGTAAACACATATC
1 ATGCCAAC-GTCCCAGACAAGGTCTTACTCGTAAACACATATC
29165791 AGAATCACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.08
43 34 0.92
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAAGGTCTTACTCGTAAACACATATCG
Found at i:29169785 original size:39 final size:39
Alignment explanation
Indices: 29169753--29169943 Score: 283
Period size: 39 Copynumber: 4.9 Consensus size: 39
29169743 GGATATAGTA
* * * * *
29169753 CCAGTACGAAGCCTGCAGACCTTAAGTCCGGATATAGTA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* *
29169792 CCAGCACGAAGCCTGCAGATCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * *
29169831 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
29169871 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
29169910 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
29169944 TACATCAAAT
Statistics
Matches: 138, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 104 0.75
40 34 0.25
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
Found at i:29169875 original size:79 final size:79
Alignment explanation
Indices: 29169774--29169927 Score: 254
Period size: 79 Copynumber: 1.9 Consensus size: 79
29169764 CCTGCAGACC
* * * *
29169774 TTAAGTCCGGATATAGTACCAGCACGAAGCCTGCAGATCTTAAGTCCGGATACAATTCCAGCACG
1 TTAAGCCCGGATACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACG
29169839 AAGCCTGCGGGTCT
66 AAGCCTGCGGGTCT
* *
29169853 TTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
1 TTAAGCCCGGATACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACG
29169918 AAGCCTGCGG
66 AAGCCTGCGG
29169928 ACCTTAAGTC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 69 1.00
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (79 bp):
TTAAGCCCGGATACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACG
AAGCCTGCGGGTCT
Found at i:29169934 original size:118 final size:118
Alignment explanation
Indices: 29169721--29169943 Score: 329
Period size: 118 Copynumber: 1.9 Consensus size: 118
29169711 CACCAACACA
* * * *
29169721 AAGCCTACGGGACTTTAAGCTCGGATATAGTACCAGTACGAAGCCTGCAGACCTTAAGTCCGGAT
1 AAGCCTACGGGACTTTAAGCCCGGATACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCGGAT
* * *
29169786 ATAGTACCAGCACGAAGCCTGCAGATCTTAAGTCCGGATACAATTCCAGCACG
66 ACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
29169839 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTACGGGACTTTAAGCCCGGATACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCGGAT
* *
29169904 ACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
66 ACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCGGATA
29169944 TACATCAAAT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
118 92 1.00
ACGTcount: A:0.29, C:0.28, G:0.24, T:0.20
Consensus pattern (118 bp):
AAGCCTACGGGACTTTAAGCCCGGATACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCGGAT
ACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:29170614 original size:24 final size:24
Alignment explanation
Indices: 29170587--29170669 Score: 85
Period size: 24 Copynumber: 3.5 Consensus size: 24
29170577 TAATTCACAT
* * *
29170587 ACATATTGACATTCCAATCCGCAC
1 ACATAATGCCATTCAAATCCGCAC
* *
29170611 ACATAGTGCCATACAAATCCGCAC
1 ACATAATGCCATTCAAATCCGCAC
* * *
29170635 TCATAATGCCATTCAAATTCGTAC
1 ACATAATGCCATTCAAATCCGCAC
*
29170659 ACATAGTGCCA
1 ACATAATGCCA
29170670 AAATCATTTC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.35, C:0.30, G:0.11, T:0.24
Consensus pattern (24 bp):
ACATAATGCCATTCAAATCCGCAC
Found at i:29171868 original size:17 final size:17
Alignment explanation
Indices: 29171846--29171879 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
29171836 CCCCACTTAA
*
29171846 TATATTATAACTTATTT
1 TATATTATAACATATTT
29171863 TATATTATAACATATTT
1 TATATTATAACATATTT
29171880 CAATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:29173834 original size:20 final size:20
Alignment explanation
Indices: 29173807--29173861 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
29173797 GAAGTATCGA
* *
29173807 TAGCTTGTGTGCAATTCTGG
1 TAGCTTGTCTACAATTCTGG
*
29173827 TGGCTTGTCTACAATTCTGG
1 TAGCTTGTCTACAATTCTGG
29173847 TAGCTTGTCTACAAT
1 TAGCTTGTCTACAAT
29173862 ACTAGCAGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.40
Consensus pattern (20 bp):
TAGCTTGTCTACAATTCTGG
Found at i:29173978 original size:49 final size:49
Alignment explanation
Indices: 29173906--29174003 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
29173896 TACAATTTTG
*
29173906 ATAGTTTATCTACATTACTGGTGGCTTGTCCACAAACTGGTGTGTTATT
1 ATAGTTTATCTACATTACCGGTGGCTTGTCCACAAACTGGTGTGTTATT
*
29173955 ATAGTTTATCTACATTACCGGTGGCTTGTCCTCAAACTGGTGTGTTATT
1 ATAGTTTATCTACATTACCGGTGGCTTGTCCACAAACTGGTGTGTTATT
29174004 GGCTGTATGA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.41
Consensus pattern (49 bp):
ATAGTTTATCTACATTACCGGTGGCTTGTCCACAAACTGGTGTGTTATT
Found at i:29197672 original size:79 final size:81
Alignment explanation
Indices: 29197533--29197720 Score: 233
Period size: 79 Copynumber: 2.4 Consensus size: 81
29197523 TATTTGAATG
*
29197533 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGC
*
29197597 ATTTGTGCGAGATACT
66 AATTGTGCGAGATACT
* * * **
29197613 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAG
*
29197674 GCAATTGTGCGAGTTACT
64 GCAATTGTGCGAGATACT
* *
29197692 ATAACCGGGCTATGTCCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
29197721 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 58 0.62
80 34 0.37
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGC
AATTGTGCGAGATACT
Found at i:29197734 original size:40 final size:40
Alignment explanation
Indices: 29197537--29197720 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
29197527 TGAATGATAT
* * * *
29197537 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
29197577 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
29197617 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
29197655 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
29197696 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
29197721 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:29197742 original size:79 final size:79
Alignment explanation
Indices: 29197589--29197753 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
29197579 GGACTAAGAT
* * **
29197589 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
29197654 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
29197668 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
29197731 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
29197747 CCGAAGG
1 CCGAAGG
29197754 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:29202103 original size:56 final size:56
Alignment explanation
Indices: 29202017--29202136 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
29202007 ACAAGGGATG
29202017 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
29202073 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
29202129 ATGGGCAA
1 ATGGGCAA
29202137 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:29203498 original size:40 final size:40
Alignment explanation
Indices: 29203267--29203491 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
29203257 TCGAATGATG
* * * * *
29203267 TCCGGGCTAAGTCCCGAAGG-TTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
29203307 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
29203347 TTCGGGCTAAG-CCCGAAGACATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
29203386 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
29203426 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
29203467 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
29203492 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 31 0.20
40 118 0.75
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:29212902 original size:40 final size:40
Alignment explanation
Indices: 29212847--29212960 Score: 147
Period size: 40 Copynumber: 2.9 Consensus size: 40
29212837 ACTCGATATC
* * *
29212847 TCACACGCTAGGTGCCATACATAGCCGAAGCTATCTCAAA
1 TCACACACTAAGTGCCATATATAGCCGAAGCTATCTCAAA
**
29212887 TCACACACTAAGTGCCATATATAGTTGAAGCTATCTCAAA
1 TCACACACTAAGTGCCATATATAGCCGAAGCTATCTCAAA
* * * *
29212927 TCGCATACTAAGTGGCTTATATAGCCGAAGCTAT
1 TCACACACTAAGTGCCATATATAGCCGAAGCTAT
29212961 ATTGAATCGC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (40 bp):
TCACACACTAAGTGCCATATATAGCCGAAGCTATCTCAAA
Found at i:29212969 original size:40 final size:40
Alignment explanation
Indices: 29212858--29212983 Score: 144
Period size: 40 Copynumber: 3.1 Consensus size: 40
29212848 CACACGCTAG
* * *
29212858 GTGCCATACATAGCCGAAGCTATCTCAAATCACACACTAA
1 GTGCCATATATAGCCGAAGCTATCTCAAATCGCAAACTAA
** *
29212898 GTGCCATATATAGTTGAAGCTATCTCAAATCGCATACTAA
1 GTGCCATATATAGCCGAAGCTATCTCAAATCGCAAACTAA
* * * ** *
29212938 GTGGCTTATATAGCCGAAGCTATATTGAATCGCAAACGAA
1 GTGCCATATATAGCCGAAGCTATCTCAAATCGCAAACTAA
29212978 GTGCCA
1 GTGCCA
29212984 CAAATAGCTG
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (40 bp):
GTGCCATATATAGCCGAAGCTATCTCAAATCGCAAACTAA
Found at i:29224542 original size:13 final size:15
Alignment explanation
Indices: 29224524--29224555 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
29224514 TTTACTCATC
29224524 AATCTCTT-CCT-TG
1 AATCTCTTGCCTCTG
29224537 AATCTCTTGCCTCTG
1 AATCTCTTGCCTCTG
29224552 AATC
1 AATC
29224556 AGCCTTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 3 0.18
15 6 0.35
ACGTcount: A:0.19, C:0.31, G:0.09, T:0.41
Consensus pattern (15 bp):
AATCTCTTGCCTCTG
Found at i:29226050 original size:13 final size:13
Alignment explanation
Indices: 29226032--29226057 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29226022 CTAAGCCACC
29226032 CCACACGGGCGTG
1 CCACACGGGCGTG
29226045 CCACACGGGCGTG
1 CCACACGGGCGTG
29226058 TCCCTGTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.38, T:0.08
Consensus pattern (13 bp):
CCACACGGGCGTG
Found at i:29231448 original size:8 final size:8
Alignment explanation
Indices: 29231435--29231473 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
29231425 ATTGACAAAA
29231435 GCCGAAAT
1 GCCGAAAT
29231443 GCCGAAAT
1 GCCGAAAT
* *
29231451 ACCGAAAA
1 GCCGAAAT
*
29231459 GCCAAAAT
1 GCCGAAAT
29231467 GCCGAAA
1 GCCGAAA
29231474 AGCTGAAAGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.46, C:0.26, G:0.21, T:0.08
Consensus pattern (8 bp):
GCCGAAAT
Found at i:29231753 original size:29 final size:29
Alignment explanation
Indices: 29231721--29231807 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
29231711 TAACGGCCTG
* *
29231721 TATAAATGTGATTTGGGCCTAATGGGGCA
1 TATAAATGTGATTTGGGCTTAATGGGCCA
* * *
29231750 TATATAGGTGATTTGGGCTTAAAGAGGCCA
1 TATAAATGTGATTTGGGCTTAATG-GGCCA
* *
29231780 TATGAATATGA-TTGGGCTTAATGGGCCA
1 TATAAATGTGATTTGGGCTTAATGGGCCA
29231808 GATATAGGTA
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
28 5 0.11
29 31 0.66
30 11 0.23
ACGTcount: A:0.29, C:0.10, G:0.30, T:0.31
Consensus pattern (29 bp):
TATAAATGTGATTTGGGCTTAATGGGCCA
Found at i:29239617 original size:40 final size:40
Alignment explanation
Indices: 29239564--29239726 Score: 211
Period size: 40 Copynumber: 4.1 Consensus size: 40
29239554 GGGATTTAGT
* *
29239564 CGGATATAACAACTCGTACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
29239604 CAGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * * * *
29239644 CGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCC
1 CGGATAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
29239684 CGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTC
1 CGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
29239724 CGG
1 CGG
29239727 TTATCATCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 2 0.02
40 100 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
Found at i:29245130 original size:29 final size:29
Alignment explanation
Indices: 29245095--29245159 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
29245085 AATGTGACTG
* *
29245095 GGCCTAACGGGCCGTATAAATGTGATTTA
1 GGCCTAACGGGCCATATAAAGGTGATTTA
* * *
29245124 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAAGGTGATTTA
29245153 GGCCTAA
1 GGCCTAA
29245160 AAAGGCCATG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (29 bp):
GGCCTAACGGGCCATATAAAGGTGATTTA
Found at i:29257568 original size:4 final size:4
Alignment explanation
Indices: 29257561--29257591 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
29257551 ATGTATATAT
29257561 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
29257592 TTAGTAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:29261929 original size:26 final size:27
Alignment explanation
Indices: 29261862--29262054 Score: 168
Period size: 27 Copynumber: 7.4 Consensus size: 27
29261852 CCTCAAAATA
*
29261862 GGTAAAATGACCATAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
*
29261889 GGTAAAATAACCGTAATGTCCC-TGTAG
1 GGTAAAATGACCGTAATG-CCCTTGTAG
** *
29261916 AAT-AAATGACCGTAACGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
*
29261942 GGTAAAATGACCGTAA------TATAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
* * *
29261963 GGTAAAATGATCGTACTGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
* * * *
29261990 GATAAAATGACCGTAATGCCCCTATCG
1 GGTAAAATGACCGTAATGCCCTTGTAG
** * *
29262017 GGTAAAATGACTATAATACCCTTGTAT
1 GGTAAAATGACCGTAATGCCCTTGTAG
29262044 GGTAAAATGAC
1 GGTAAAATGAC
29262055 GATTATGCCC
Statistics
Matches: 132, Mismatches: 25, Indels: 18
0.75 0.14 0.10
Matches are distributed among these distances:
21 18 0.14
25 3 0.02
26 18 0.14
27 90 0.68
28 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCTTGTAG
Found at i:29262027 original size:75 final size:74
Alignment explanation
Indices: 29261886--29262027 Score: 194
Period size: 75 Copynumber: 1.9 Consensus size: 74
29261876 AATGCCCTTG
* * *
29261886 TAGGGTAAAATAACCGTAATGTCCCTGTAGAATAAATGACCGTAACGCCCTTGTAGGGTAAAATG
1 TAGGGTAAAATAACCGTAATGCCCCTGTAGAATAAATGACCGTAACGCCCCTATAGGGTAAAATG
29261951 ACCGTAATA
66 ACCGTAATA
* * * * * *
29261960 TAGGGTAAAATGATCGTACTGCCCCTGTAGGATAAAATGACCGTAATGCCCCTATCGGGTAAAAT
1 TAGGGTAAAATAACCGTAATGCCCCTGTAGAAT-AAATGACCGTAACGCCCCTATAGGGTAAAAT
29262025 GAC
65 GAC
29262028 TATAATACCC
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
74 28 0.48
75 30 0.52
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.24
Consensus pattern (74 bp):
TAGGGTAAAATAACCGTAATGCCCCTGTAGAATAAATGACCGTAACGCCCCTATAGGGTAAAATG
ACCGTAATA
Found at i:29262447 original size:33 final size:33
Alignment explanation
Indices: 29262410--29262492 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
29262400 GCCCACACTA
* *
29262410 TTACTGTATAGGGCTAAGGCCCAGA-TTGTATTG
1 TTACTGTATAGGGCTAAGACCCAGACTT-TACTG
*
29262443 TTACTATATAGGGCTAAGACCCAGACTTTACTG
1 TTACTGTATAGGGCTAAGACCCAGACTTTACTG
* *
29262476 ATATTGTATAGGGCTAA
1 TTACTGTATAGGGCTAA
29262493 AGCACAGACT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
33 41 0.95
34 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (33 bp):
TTACTGTATAGGGCTAAGACCCAGACTTTACTG
Done.