Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 95 of 333
Found at i:29984963 original size:20 final size:19
Alignment explanation
Indices: 29984933--29984991 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 19
29984923 AACATTAAAT
29984933 TAAATTTAATATTAAGATAA
1 TAAA-TTAATATTAAGATAA
* *
29984953 TCAATTCAATATTAAAATAA
1 TAAATT-AATATTAAGATAA
* *
29984973 TAAAATACTATTAAGATAA
1 TAAATTAATATTAAGATAA
29984992 GTATTAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
19 13 0.41
20 19 0.59
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (19 bp):
TAAATTAATATTAAGATAA
Found at i:29995401 original size:59 final size:57
Alignment explanation
Indices: 29995259--29995410 Score: 170
Period size: 59 Copynumber: 2.7 Consensus size: 57
29995249 TTCAACTATA
* * *
29995259 ATTAAACTTAA-TTAAT-TT-AA-TATTAAATTAATATAATATTTATCAAGATAAAT
1 ATTAAATTTAATTTAATATTAAACTATTAAAATAATATAATATTTATCAAGATAAAC
* * *
29995312 ATTAGATTAAATTTAATATTAAATCTTATTAAAATAAT-TGAATGTTTATCACAAGATAAAC
1 ATTAAATTTAATTTAATATTAAA-C-TATTAAAATAATAT-AATATTTAT--CAAGATAAAC
29995373 ATTAAATTTAATTTAATATTAAACTATTAAAATAATAT
1 ATTAAATTTAATTTAATATTAAACTATTAAAATAATAT
29995411 TATTTTTGAA
Statistics
Matches: 81, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
53 8 0.10
54 5 0.06
55 2 0.02
56 2 0.02
58 1 0.01
59 31 0.38
60 2 0.02
61 30 0.37
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (57 bp):
ATTAAATTTAATTTAATATTAAACTATTAAAATAATATAATATTTATCAAGATAAAC
Found at i:30009441 original size:43 final size:43
Alignment explanation
Indices: 30009285--30009441 Score: 127
Period size: 43 Copynumber: 3.7 Consensus size: 43
30009275 CATCCATTAT
* * * * ** * *
30009285 GAACTCGAACCACTCAACGAGCTCAGATGCTCACATCCATAAT
1 GAACTCGGACCACTCAACAAGCTCGGATTCTCACATATATCAC
* * * * * * * *
30009328 GAACTCGAACTACTTAACTAGCTCGAATGC-CTCATATATCGC
1 GAACTCGGACCACTCAACAAGCTCGGATTCTCACATATATCAC
* * *
30009370 GAACTTGGACCACTCAACAAGTTTGGATTCTCACATATATCAC
1 GAACTCGGACCACTCAACAAGCTCGGATTCTCACATATATCAC
*
30009413 GAACTCGGACCGCTCAACAAGCTCGGATT
1 GAACTCGGACCACTCAACAAGCTCGGATT
30009442 TCTTAATTCC
Statistics
Matches: 87, Mismatches: 26, Indels: 2
0.76 0.23 0.02
Matches are distributed among these distances:
42 27 0.31
43 60 0.69
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
GAACTCGGACCACTCAACAAGCTCGGATTCTCACATATATCAC
Found at i:30011756 original size:30 final size:30
Alignment explanation
Indices: 30011718--30011774 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
30011708 CAACCAAGAC
*
30011718 ATCAACAC-ATCATTCACATGCT-ATCATCT
1 ATCAACACAAACA-TCACATGCTCATCATCT
30011747 ATCATACACAAACATCACATGCTCATCA
1 ATCA-ACACAAACATCACATGCTCATCA
30011775 ACTCAAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 4 0.17
30 13 0.54
31 7 0.29
ACGTcount: A:0.39, C:0.32, G:0.04, T:0.26
Consensus pattern (30 bp):
ATCAACACAAACATCACATGCTCATCATCT
Found at i:30023956 original size:25 final size:25
Alignment explanation
Indices: 30023922--30023971 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
30023912 ATAACACAGG
30023922 AGCACCCCAAGGTGAAAAACTCGGT
1 AGCACCCCAAGGTGAAAAACTCGGT
30023947 AGCACCCCAAGGTGAAAAACTCGGT
1 AGCACCCCAAGGTGAAAAACTCGGT
30023972 CTCACAAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.28, G:0.24, T:0.12
Consensus pattern (25 bp):
AGCACCCCAAGGTGAAAAACTCGGT
Found at i:30029841 original size:23 final size:24
Alignment explanation
Indices: 30029765--30029884 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
30029755 GCTTTATCAT
*
30029765 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
30029790 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
30029815 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
30029838 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
30029862 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
30029885 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 24 0.27
24 34 0.38
25 25 0.28
26 6 0.07
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:30029872 original size:47 final size:47
Alignment explanation
Indices: 30029786--30029883 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
30029776 CCTAGCCTCT
30029786 TTTAATAACTGGGGCAAAGCCCTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAGCCC-TTTTTAATAACTGGGGCATAAGCCC
30029834 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
30029881 TTT
1 TTT
30029884 TGCACTTCCT
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 27 0.55
48 16 0.33
49 6 0.12
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
Found at i:30029956 original size:9 final size:9
Alignment explanation
Indices: 30029942--30029998 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
30029932 ATCTCGTGTG
30029942 CATATCATA
1 CATATCATA
*
30029951 CATATCATTTG
1 CATATCA--TA
30029962 CATATCATA
1 CATATCATA
* *
30029971 CATGTCATGTG
1 CATATCA--TA
30029982 CATATCATA
1 CATATCATA
30029991 CATATCAT
1 CATATCAT
30029999 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (9 bp):
CATATCATA
Found at i:30029963 original size:20 final size:20
Alignment explanation
Indices: 30029938--30030000 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
30029928 GAACATCTCG
30029938 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
30029958 TTTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
30029978 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
30029998 TGT
1 TGT
30030001 TTATCAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:30035152 original size:40 final size:41
Alignment explanation
Indices: 30035093--30035344 Score: 286
Period size: 40 Copynumber: 6.3 Consensus size: 41
30035083 CATTTGAATG
* *
30035093 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
30035133 TTATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTTGATT
* * *
30035173 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
30035213 TTATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
30035253 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * * * *
30035293 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTG-TGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
30035333 ATATCC-GGCTAA
1 ATATCCGGGCTAA
30035345 ATTCCGAAGA
Statistics
Matches: 179, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
39 10 0.06
40 163 0.91
41 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
Found at i:30035307 original size:120 final size:120
Alignment explanation
Indices: 30035093--30035344 Score: 391
Period size: 120 Copynumber: 2.1 Consensus size: 120
30035083 CATTTGAATG
* * * *
30035093 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCAAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
**
30035158 TTTGTGTGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
66 TTTGTGCAAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
30035213 TTATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCAAAGGCATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
* *
30035277 ATTTGTGCAAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
65 ATTTGTGCAAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
30035333 ATATCC-GGCTAA
1 ATATCCGGGCTAA
30035345 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
119 6 0.05
120 111 0.93
121 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCAAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCAAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:30038860 original size:28 final size:28
Alignment explanation
Indices: 30038797--30038950 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
30038787 ATATTAAGTC
* *
30038797 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
30038824 CGCACACTTACTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
30038852 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
30038880 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
30038908 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
30038936 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
30038951 GTACAATTTA
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
27 21 0.17
28 99 0.82
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:30044241 original size:31 final size:31
Alignment explanation
Indices: 30044199--30044262 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
30044189 CCTTTTCATA
*
30044199 TTTCATTTTTCATAACACTGGGCCAAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAGCCT
** *
30044230 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAGCCT
30044261 TT
1 TT
30044263 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCAAAGCCT
Found at i:30044501 original size:23 final size:24
Alignment explanation
Indices: 30044470--30044575 Score: 171
Period size: 24 Copynumber: 4.4 Consensus size: 24
30044460 ATGGAGGCCT
30044470 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
30044494 AGCCCTTTTTTAATAACTGGGGCATA
1 AGCCC--TTTTAATAACTGGGGCATA
30044520 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
30044543 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
30044567 AGCCCTTTT
1 AGCCCTTTT
30044576 GCACTTCCTC
Statistics
Matches: 78, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
23 24 0.31
24 31 0.40
25 17 0.22
26 6 0.08
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:30044563 original size:47 final size:47
Alignment explanation
Indices: 30044477--30044574 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
30044467 CCTAGCCTCT
30044477 TTTAATAACTGGGGCAAAGCCCTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAGCCC-TTTTTAATAACTGGGGCATAAGCCC
30044525 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
30044572 TTT
1 TTT
30044575 TGCACTTCCT
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 27 0.55
48 16 0.33
49 6 0.12
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
Found at i:30044647 original size:9 final size:9
Alignment explanation
Indices: 30044633--30044689 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
30044623 ATCTCGTGTG
30044633 CATATCATA
1 CATATCATA
*
30044642 CATATCATGTG
1 CATATCA--TA
30044653 CATATCATA
1 CATATCATA
* *
30044662 CATGTCATGTG
1 CATATCA--TA
30044673 CATATCATA
1 CATATCATA
30044682 CATATCAT
1 CATATCAT
30044690 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:30044652 original size:20 final size:20
Alignment explanation
Indices: 30044629--30044691 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
30044619 GAACATCTCG
30044629 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
30044649 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
30044669 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
30044689 TGT
1 TGT
30044692 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:30058401 original size:12 final size:12
Alignment explanation
Indices: 30058384--30058413 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
30058374 ATTACAGTGC
30058384 ATAAAAATAATA
1 ATAAAAATAATA
30058396 ATAAAAATAATA
1 ATAAAAATAATA
*
30058408 ACAAAA
1 ATAAAA
30058414 TGGAAGCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAAATAATA
Found at i:30059321 original size:29 final size:29
Alignment explanation
Indices: 30059254--30059372 Score: 136
Period size: 29 Copynumber: 4.2 Consensus size: 29
30059244 TACATACAAG
*
30059254 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
30059282 CAAATGACCCATCT-GGCCCAATTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* *
30059311 CTTATGGCCCACTAGGCCCAATTCACATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* * *
30059340 CATATGGCCCATTAGGCCGAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
30059369 -ATAT
1 CATAT
30059373 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
28 22 0.29
29 54 0.71
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:30060840 original size:8 final size:8
Alignment explanation
Indices: 30060827--30060860 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
30060817 AAAAGAAAAA
30060827 TTCAAGAT
1 TTCAAGAT
30060835 TTCAAGAT
1 TTCAAGAT
**
30060843 TTTTAGAT
1 TTCAAGAT
30060851 TTCAAGAT
1 TTCAAGAT
30060859 TT
1 TT
30060861 TTGGGGCGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (8 bp):
TTCAAGAT
Found at i:30060852 original size:16 final size:16
Alignment explanation
Indices: 30060831--30060862 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
30060821 GAAAAATTCA
30060831 AGATTTCAAGATTTTT
1 AGATTTCAAGATTTTT
30060847 AGATTTCAAGATTTTT
1 AGATTTCAAGATTTTT
30060863 GGGGCGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (16 bp):
AGATTTCAAGATTTTT
Found at i:30069096 original size:19 final size:19
Alignment explanation
Indices: 30069041--30069096 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
30069031 TTTAAGTGAG
*
30069041 AGGTTAATTAGATTTTAATTA
1 AGGTTAATTA-AGTTT-ATTA
* * *
30069062 A-GTAAATTTAGCTTATTA
1 AGGTTAATTAAGTTTATTA
30069080 AGGTTAATTAAGTTTAT
1 AGGTTAATTAAGTTTAT
30069097 GGATTAAATT
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
18 5 0.19
19 15 0.56
20 6 0.22
21 1 0.04
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (19 bp):
AGGTTAATTAAGTTTATTA
Found at i:30072902 original size:47 final size:47
Alignment explanation
Indices: 30072851--30073160 Score: 503
Period size: 47 Copynumber: 6.6 Consensus size: 47
30072841 GATAATTGTG
* *
30072851 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
30072898 ATGTGAAAGTGTATATATAAGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGA
30072947 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
30072994 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
30073041 ATGTGGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
30073088 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
30073135 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
30073161 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 200 0.81
49 47 0.19
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:30073335 original size:37 final size:37
Alignment explanation
Indices: 30073279--30073357 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
30073269 CCGAGCTCTA
* * *
30073279 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
30073316 AAGACCTGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
30073353 AAGAC
1 AAGAC
30073358 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:30094742 original size:17 final size:18
Alignment explanation
Indices: 30094701--30094743 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
30094691 TGTATTTACT
30094701 TATTATATAAGTAAATAA
1 TATTATATAAGTAAATAA
* *
30094719 TAATATA-AAGTAAATTA
1 TATTATATAAGTAAATAA
*
30094736 TTTTATAT
1 TATTATAT
30094744 TATATAATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (18 bp):
TATTATATAAGTAAATAA
Found at i:30109229 original size:29 final size:29
Alignment explanation
Indices: 30109195--30109268 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
30109185 TAATCAACCG
*
30109195 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
30109224 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
30109253 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
30109269 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:30114167 original size:21 final size:20
Alignment explanation
Indices: 30114119--30114168 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
30114109 TCTTTATGTT
* *
30114119 TTATTTCTTTTATTTTCTTTA
1 TTATTT-TTTTATTTTATTAA
30114140 TTCATTTTTTTATTTTATTAA
1 TT-ATTTTTTTATTTTATTAA
30114161 TATATTTT
1 T-TATTTT
30114169 AATTATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (20 bp):
TTATTTTTTTATTTTATTAA
Found at i:30114998 original size:21 final size:21
Alignment explanation
Indices: 30114974--30115020 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
30114964 CGAGACTTCA
* * *
30114974 AAAATAAATAGAAATAAAAGT
1 AAAATAAATAAAAACAAAAAT
30114995 AAAATAAATAAAAACAAAAAT
1 AAAATAAATAAAAACAAAAAT
30115016 AAAAT
1 AAAAT
30115021 GAGTTTGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (21 bp):
AAAATAAATAAAAACAAAAAT
Found at i:30115080 original size:13 final size:13
Alignment explanation
Indices: 30115062--30115088 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
30115052 AATACTGGTC
30115062 TCACACGGCCGTG
1 TCACACGGCCGTG
30115075 TCACACGGCCGTG
1 TCACACGGCCGTG
30115088 T
1 T
30115089 GGCTCGCGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.30, T:0.19
Consensus pattern (13 bp):
TCACACGGCCGTG
Found at i:30122995 original size:54 final size:54
Alignment explanation
Indices: 30122906--30123037 Score: 176
Period size: 54 Copynumber: 2.4 Consensus size: 54
30122896 CATATTGCGA
* * *
30122906 GATTACCAGTCCAGGCTAAATCCCCCGTAATATCAACTCATAATGTGATGCCGT
1 GATTACCAGTCCAGGCTAAATCCCCAGTAACATCAACTCATAAAGTGATGCCGT
* * * *
30122960 GATTACTAGTCTAGGCTAAATCCCCAGTAACATCAACTCATAAAGTGATTTCAG-
1 GATTACCAGTCCAGGCTAAATCCCCAGTAACATCAACTCATAAAGTGA-TGCCGT
*
30123014 GATTACCAGTCCAGACTAAATCCC
1 GATTACCAGTCCAGGCTAAATCCC
30123038 TTGTAGTGAC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 64 0.96
55 3 0.04
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.26
Consensus pattern (54 bp):
GATTACCAGTCCAGGCTAAATCCCCAGTAACATCAACTCATAAAGTGATGCCGT
Found at i:30145462 original size:79 final size:78
Alignment explanation
Indices: 30145360--30145583 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
30145350 GCTCCTCGTT
* *
30145360 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
30145425 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
30145440 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
30145504 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
** * * * *
30145518 CAAATGCCTTCAGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTC-GGGCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
30145582 GA
63 GA
30145584 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 34 0.27
79 57 0.46
80 34 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:30145477 original size:39 final size:40
Alignment explanation
Indices: 30145360--30145583 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
30145350 GCTCCTCGTT
* *
30145360 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
30145400 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
30145440 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
30145479 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * * *
30145518 CAAATGCCTTC-AGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
30145559 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
30145584 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 74 0.45
40 77 0.47
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:30165461 original size:42 final size:42
Alignment explanation
Indices: 30165404--30165569 Score: 161
Period size: 42 Copynumber: 3.9 Consensus size: 42
30165394 TAGGGTTATG
30165404 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
** * * *
30165446 TGTGATTTTGTGTAAGACCATGTCTGGGACATGACATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * ** * * * *
30165488 CGAGACATCGTGTAAGACCATAGCTGGGCTATCGGCATTGATATA
1 TGTGATTTCATGTAAGACCATATCTGGGATAT-GGCATCG--ATA
** *
30165533 TGTGATCCCATGTAAGTCCATATCTGGGATATGGCAT
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCAT
30165570 TGGCATCTTA
Statistics
Matches: 96, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
42 60 0.62
43 5 0.05
44 5 0.05
45 26 0.27
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:30167605 original size:27 final size:27
Alignment explanation
Indices: 30167567--30167752 Score: 257
Period size: 27 Copynumber: 6.9 Consensus size: 27
30167557 CTATGTACAG
* * *
30167567 GTTTGTAAAATTACTAAAATACCCTTT
1 GTTTGTAAAATTACCAAAATACCCCTA
*
30167594 GTTTATAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
*
30167621 GTTTGTAAAATTACCAAAATACCCCTG
1 GTTTGTAAAATTACCAAAATACCCCTA
*
30167648 GTTTGTAAAATTATCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
30167675 GTTTGTAAAATTACCAAAATACCCCT-
1 GTTTGTAAAATTACCAAAATACCCCTA
*
30167701 GATTTGTGAAATTACCAAAATACCCCTA
1 G-TTTGTAAAATTACCAAAATACCCCTA
* * **
30167729 ATTTGTGAAATTACTGAAATACCC
1 GTTTGTAAAATTACCAAAATACCC
30167753 TCGACCTGTA
Statistics
Matches: 144, Mismatches: 13, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 143 0.99
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
GTTTGTAAAATTACCAAAATACCCCTA
Found at i:30167767 original size:54 final size:54
Alignment explanation
Indices: 30167567--30167805 Score: 268
Period size: 54 Copynumber: 4.4 Consensus size: 54
30167557 CTATGTACAG
* * *
30167567 GTTTGTAAAATTACTAAAATACCCTTTG-TTTATAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCC-CTGATTTGTAAAATTACCAAAATACCCCTA
* *
30167621 GTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTA
*
30167675 GTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTA
* * ** ** *** *
30167729 ATTTGTGAAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGAAATA-CCCTC
1 GTTTGTAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCCTA
* *
30167782 GACTTGTAAAATTACCAAAGTACC
1 G-TTTGTAAAATTACCAAAATACC
30167806 ATTGATTTAC
Statistics
Matches: 157, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
53 10 0.06
54 146 0.93
55 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
GTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTA
Found at i:30167805 original size:27 final size:26
Alignment explanation
Indices: 30167568--30167805 Score: 217
Period size: 27 Copynumber: 8.8 Consensus size: 26
30167558 TATGTACAGG
* *
30167568 TTTGTAAAATTACTAAAATACCCTTTG-
1 TTTGTAAAATTACCAAAATACCC--CGA
* *
30167595 TTTATAAAATTACCAAAATACCCCTA
1 TTTGTAAAATTACCAAAATACCCCGA
*
30167621 GTTTGTAAAATTACCAAAATACCCCTGG
1 -TTTGTAAAATTACCAAAATACCCC-GA
* *
30167649 TTTGTAAAATTATCAAAATACCCCTA
1 TTTGTAAAATTACCAAAATACCCCGA
30167675 GTTTGTAAAATTACCAAAATACCCCTGA
1 -TTTGTAAAATTACCAAAATACCCC-GA
* *
30167703 TTTGTGAAATTACCAAAATACCCCTAA
1 TTTGTAAAATTACCAAAATACCCC-GA
* **
30167730 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTGTAAAATTACCAAAATACCC-CGA
** ***
30167757 CCTGTAAAATTATTGAAATACCCTCGA
1 TTTGTAAAATTACCAAAATACCC-CGA
* *
30167784 CTTGTAAAATTACCAAAGTACC
1 TTTGTAAAATTACCAAAATACC
30167806 ATTGATTTAC
Statistics
Matches: 179, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
27 177 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (26 bp):
TTTGTAAAATTACCAAAATACCCCGA
Found at i:30167859 original size:27 final size:27
Alignment explanation
Indices: 30167736--30167859 Score: 88
Period size: 27 Copynumber: 4.6 Consensus size: 27
30167726 CTAATTTGTG
* * **
30167736 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCGAAATACCCTCGACTTACA
** **
30167763 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGACTTACA
* * *
30167790 AAATTACC-AAAGTACCATTGATTTACA
1 AAATTACCGAAA-TACCCTCGACTTACA
* *** *
30167817 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCGAAATACCCTCGACTTACA
30167844 AAATTACCGAAATACC
1 AAATTACCGAAATACC
30167860 TTTATAGGGT
Statistics
Matches: 76, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
26 3 0.04
27 73 0.96
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGACTTACA
Found at i:30167878 original size:27 final size:27
Alignment explanation
Indices: 30167845--30168075 Score: 309
Period size: 27 Copynumber: 8.6 Consensus size: 27
30167835 CGATTTACAA
* ** *
30167845 AATTACCGAAATACCTTTATAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
30167872 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
30167899 AATTATCGTAATACCCCTGTAAGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
30167926 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
30167953 AATTATCGAAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
30167980 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
30168007 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
** *
30168034 AATTATTAAAATACCCCTGTAGGGTGG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
30168061 AATTATCGAGATACC
1 AATTATCGAAATACC
30168076 TTGTGGGGTA
Statistics
Matches: 179, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 179 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:30168572 original size:22 final size:22
Alignment explanation
Indices: 30168520--30168584 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
30168510 TTAAAGCCTT
* *
30168520 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
30168542 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
30168564 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
30168585 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:30168831 original size:27 final size:26
Alignment explanation
Indices: 30168743--30168837 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 26
30168733 ATTCTGTTAA
* **
30168743 GTGGCTTTGCCACTTTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
30168770 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
30168797 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
30168824 GTGACTCTGTCACA
1 GTGGCTCTGCCACA
30168838 TTATATGATA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
26 9 0.15
27 45 0.75
28 6 0.10
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:30169020 original size:6 final size:6
Alignment explanation
Indices: 30168981--30169080 Score: 98
Period size: 6 Copynumber: 16.3 Consensus size: 6
30168971 TTGCATTCAC
* * *
30168981 ATTCTG ATTTTG ATTCTG -TTACCTA ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
30169030 ATTCTG -TCACTTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG
1 ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
30169079 AT
1 AT
30169081 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
5 4 0.05
6 66 0.85
7 6 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:30169032 original size:37 final size:37
Alignment explanation
Indices: 30168981--30169071 Score: 137
Period size: 37 Copynumber: 2.5 Consensus size: 37
30168971 TTGCATTCAC
* *
30168981 ATTCTGATTTTGATTCTGTTACCTAATACTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTGATTCTG
* * *
30169018 ATTCTGATTCTGATTCTGTCACTTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTGATTCTG
30169055 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
30169072 AGTTCTGATA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTGATTCTG
Found at i:30174305 original size:41 final size:41
Alignment explanation
Indices: 30174194--30174343 Score: 121
Period size: 41 Copynumber: 3.7 Consensus size: 41
30174184 GATATTCGGG
* * ** * *
30174194 CTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATTTAATCGGG
1 CTTTGAGCCTAGCAAGCTTTGTGCTGGTGTATAAAATCAGA
*
30174235 CTTT-ATGCCTAGCAGGCTTAT-TGCTGGTGTATAAAATCAGA
1 CTTTGA-GCCTAGCAAGCTT-TGTGCTGGTGTATAAAATCAGA
* * * *
30174276 CTTTGAGTCTAGCAAGCTTTGTGCCGGTG--TGAAATACAGG
1 CTTTGAGCCTAGCAAGCTTTGTGCTGGTGTATAAAAT-CAGA
* *
30174316 CTTAG-GCCTAGCAAGCTTTATGCTGGTG
1 CTTTGAGCCTAGCAAGCTTTGTGCTGGTG
30174344 AATTATTATA
Statistics
Matches: 88, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
39 25 0.28
40 9 0.10
41 52 0.59
42 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (41 bp):
CTTTGAGCCTAGCAAGCTTTGTGCTGGTGTATAAAATCAGA
Found at i:30178667 original size:40 final size:40
Alignment explanation
Indices: 30178609--30178776 Score: 216
Period size: 40 Copynumber: 4.2 Consensus size: 40
30178599 TCTTCAGGAT
*
30178609 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
30178648 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * *
30178688 TTAGCCCGGATATAATC-ACTAGCATC-AATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCA-CAAATGCCTTCGGGTC
* ** *
30178728 ATAGCCCGGATATAGCAACTCGCATGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
30178768 TTAGTCCGG
1 TTAGCCCGG
30178777 TTACCATCCG
Statistics
Matches: 112, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
39 6 0.05
40 103 0.92
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:30180825 original size:28 final size:28
Alignment explanation
Indices: 30180762--30180859 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
30180752 ATATTAAGTC
*
30180762 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
30180789 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
30180817 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
30180846 CGCACACTTAGTGC
1 CGCACACTTAGTGC
30180860 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:30189319 original size:79 final size:78
Alignment explanation
Indices: 30189217--30189440 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 78
30189207 GCTCCTCGTT
* *
30189217 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
30189282 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
30189297 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
30189361 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
30189375 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
30189439 GA
63 GA
30189441 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 36 0.29
79 56 0.44
80 34 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:30189334 original size:39 final size:40
Alignment explanation
Indices: 30189217--30189440 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
30189207 GCTCCTCGTT
* *
30189217 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
30189257 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
30189297 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
30189336 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
30189375 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
30189416 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
30189441 CATCATTCAA
Statistics
Matches: 166, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 77 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:30195681 original size:23 final size:23
Alignment explanation
Indices: 30195651--30195696 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
30195641 GAAAAAAGTA
30195651 AACTATGACTG-GTAATTGTCGTG
1 AACTATGAC-GAGTAATTGTCGTG
30195674 AACTATGACGAGTAATTGTCGTG
1 AACTATGACGAGTAATTGTCGTG
30195697 TAACCCTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (23 bp):
AACTATGACGAGTAATTGTCGTG
Found at i:30201454 original size:33 final size:33
Alignment explanation
Indices: 30201402--30201494 Score: 134
Period size: 33 Copynumber: 2.8 Consensus size: 33
30201392 TAAGAGGAGT
*
30201402 GAGGAGTAGAGTACTGCGGTGGATACGGGTCGG
1 GAGGAGTGGAGTACTGCGGTGGATACGGGTCGG
**
30201435 G-GGCAGTGTTGTACTGCGGTGGATACGGGTCGG
1 GAGG-AGTGGAGTACTGCGGTGGATACGGGTCGG
*
30201468 GAGGAGTGGAGTACTACGGTGGATACG
1 GAGGAGTGGAGTACTGCGGTGGATACG
30201495 AGCCAGGGGT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
32 2 0.04
33 48 0.92
34 2 0.04
ACGTcount: A:0.19, C:0.13, G:0.47, T:0.20
Consensus pattern (33 bp):
GAGGAGTGGAGTACTGCGGTGGATACGGGTCGG
Found at i:30201523 original size:66 final size:66
Alignment explanation
Indices: 30201402--30201526 Score: 160
Period size: 66 Copynumber: 1.9 Consensus size: 66
30201392 TAAGAGGAGT
* * * * * * *
30201402 GAGGAGTAGAGTACTGCGGTGGATACGGGTCGGGGGCAGTGTTGTACTGCGGTGGATACGGGTCG
1 GAGGAGTAGAGTACTACGGTGGATACGAGCCAGGGGCAGTGCTATACTGCAGTGGATACGGGTCG
30201467 G
66 G
* * *
30201468 GAGGAGTGGAGTACTACGGTGGATACGAGCCAGGGGTAGTGCTATGCTGCAGTGGATAC
1 GAGGAGTAGAGTACTACGGTGGATACGAGCCAGGGGCAGTGCTATACTGCAGTGGATAC
30201527 AAGCCAGGGG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 49 1.00
ACGTcount: A:0.20, C:0.14, G:0.45, T:0.21
Consensus pattern (66 bp):
GAGGAGTAGAGTACTACGGTGGATACGAGCCAGGGGCAGTGCTATACTGCAGTGGATACGGGTCG
G
Found at i:30201556 original size:33 final size:33
Alignment explanation
Indices: 30201478--30201561 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 33
30201468 GAGGAGTGGA
* *
30201478 GTACTACGGTGGATACGAGCCAGGGGTAGTGCT
1 GTACTACGGTGGATACAAGCCAGGGGAAGTGCT
* * * *
30201511 ATGCTGCAGTGGATACAAGCCAGGGGAAGTGCT
1 GTACTACGGTGGATACAAGCCAGGGGAAGTGCT
30201544 GTACTACGGTGGATACAA
1 GTACTACGGTGGATACAA
30201562 CCCAAAGATA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.36, T:0.20
Consensus pattern (33 bp):
GTACTACGGTGGATACAAGCCAGGGGAAGTGCT
Found at i:30204508 original size:10 final size:10
Alignment explanation
Indices: 30204493--30204518 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
30204483 AGATTACCTT
30204493 TTTTTCTTTC
1 TTTTTCTTTC
30204503 TTTTTCTTTC
1 TTTTTCTTTC
30204513 TTTTTC
1 TTTTTC
30204519 CTTCCATCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:30204607 original size:19 final size:18
Alignment explanation
Indices: 30204583--30204623 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
30204573 CAGTGCCGCC
*
30204583 TTCTTCTCCTTCTCTTCTT
1 TTCTTCTCCTTCCCTT-TT
30204602 TTCTTCTCCTTCCCTTTT
1 TTCTTCTCCTTCCCTTTT
30204620 TTCT
1 TTCT
30204624 CCTTCACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (18 bp):
TTCTTCTCCTTCCCTTTT
Found at i:30204625 original size:15 final size:16
Alignment explanation
Indices: 30204583--30204628 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 16
30204573 CAGTGCCGCC
30204583 TTCTTCTCCTTCTCTTCTT
1 TTCTTCTCCTTC-C--CTT
30204602 TTCTTCTCCTTCCCTT
1 TTCTTCTCCTTCCCTT
30204618 TT-TTCTCCTTC
1 TTCTTCTCCTTC
30204629 ACTCACACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 9 0.33
16 5 0.19
18 1 0.04
19 12 0.44
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCTTCTCCTTCCCTT
Found at i:30204770 original size:27 final size:27
Alignment explanation
Indices: 30204735--30204792 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
30204725 AGTGGGTGTC
* * *
30204735 GCCTTTGGCAGCCCCACCATTGGTGCA
1 GCCTATGGCAGCCCCACAACTGGTGCA
*
30204762 GCCTATGGCAGCCCCACAACTGGTGCC
1 GCCTATGGCAGCCCCACAACTGGTGCA
30204789 GCCT
1 GCCT
30204793 CTGACATGCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.16, C:0.40, G:0.26, T:0.19
Consensus pattern (27 bp):
GCCTATGGCAGCCCCACAACTGGTGCA
Found at i:30231978 original size:30 final size:30
Alignment explanation
Indices: 30231944--30232000 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
30231934 AAGTATTTTT
* *
30231944 AAAATTTGGTTACTCTTTTTGTAAATAATA
1 AAAATTTGATGACTCTTTTTGTAAATAATA
*
30231974 AAAATTTGATGCCTCTTTTTGTAAATA
1 AAAATTTGATGACTCTTTTTGTAAATA
30232001 TTTTCAAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.46
Consensus pattern (30 bp):
AAAATTTGATGACTCTTTTTGTAAATAATA
Found at i:30232284 original size:17 final size:18
Alignment explanation
Indices: 30232258--30232291 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
30232248 CTTATTTTTA
30232258 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
30232275 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
30232292 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:30232459 original size:25 final size:25
Alignment explanation
Indices: 30232431--30232479 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
30232421 TTTTCTCCTA
*
30232431 AATTTTT-AATTTTATTTAATTATTT
1 AATTTTTCAA-TTTATTGAATTATTT
30232456 AATTTTTCAATTTATTGAATTATT
1 AATTTTTCAATTTATTGAATTATT
30232480 AATAATTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (25 bp):
AATTTTTCAATTTATTGAATTATTT
Found at i:30234924 original size:30 final size:30
Alignment explanation
Indices: 30234890--30234946 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
30234880 AAGTATTTTT
* *
30234890 AAAATTTGGTTACTCTTTTTGTAAATAATA
1 AAAATTTGATGACTCTTTTTGTAAATAATA
*
30234920 AAAATTTGATGCCTCTTTTTGTAAATA
1 AAAATTTGATGACTCTTTTTGTAAATA
30234947 TTTTCAAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.46
Consensus pattern (30 bp):
AAAATTTGATGACTCTTTTTGTAAATAATA
Found at i:30235230 original size:17 final size:18
Alignment explanation
Indices: 30235204--30235237 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
30235194 CTTATTTTTA
30235204 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
30235221 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
30235238 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:30235405 original size:25 final size:25
Alignment explanation
Indices: 30235377--30235425 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
30235367 TTTTCTCCTA
*
30235377 AATTTTT-AATTTTATTTAATTATTT
1 AATTTTTCAA-TTTATTGAATTATTT
30235402 AATTTTTCAATTTATTGAATTATT
1 AATTTTTCAATTTATTGAATTATT
30235426 AATAATTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (25 bp):
AATTTTTCAATTTATTGAATTATTT
Found at i:30241020 original size:28 final size:28
Alignment explanation
Indices: 30240957--30241107 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
30240947 ATATTAAGTC
*
30240957 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
30240984 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
30241012 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
30241040 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
30241068 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
30241097 CGCACACTTAG
1 CGCACACTTAG
30241108 CGCCAATGTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:30244926 original size:20 final size:22
Alignment explanation
Indices: 30244891--30244948 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
30244881 ACATGTTAGC
**
30244891 AAACAAATATGAATAT-AAAT-
1 AAACAAATATTTATATAAAATA
*
30244911 AGACAAATATTTATATAAAATA
1 AAACAAATATTTATATAAAATA
*
30244933 AAATAAATATTTATAT
1 AAACAAATATTTATAT
30244949 TTAAAATATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 13 0.42
21 4 0.13
22 14 0.45
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (22 bp):
AAACAAATATTTATATAAAATA
Found at i:30246938 original size:79 final size:81
Alignment explanation
Indices: 30246802--30246986 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
30246792 TTGAATGATG
*
30246802 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
30246866 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
30246881 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
30246943 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
30246961 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
30246987 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:30246993 original size:40 final size:40
Alignment explanation
Indices: 30246802--30246986 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
30246792 TTGAATGATG
* * * *
30246802 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
30246842 TCCGGACTAAGAT-CCGAAGGCAATTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
30246882 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
30246921 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
30246962 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
30246987 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 80 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:30247008 original size:79 final size:79
Alignment explanation
Indices: 30246855--30247019 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
30246845 GGACTAAGAT
* **
30246855 CCGAAGGCAATTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
30246920 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
30246934 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
30246997 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
30247013 CCGAAGG
1 CCGAAGG
30247020 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:30259537 original size:40 final size:39
Alignment explanation
Indices: 30259506--30259715 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 39
30259496 GGACTAAGAT
30259506 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-C
30259546 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
*
30259585 CTCGAAGGCCTTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
1 C-CGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAG-C
* * * ** *
30259626 CTGAAGGCATTCGTGCGAGTTGTTAAA-TCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAG-C
* * * * *
30259666 CCGAAGGCA-TTGTGTGAGTTACTAAA-ACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAG-C
30259705 CCGAAGGCATT
1 CCGAAGGCATT
30259716 GAACGAGGAG
Statistics
Matches: 149, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
39 34 0.23
40 110 0.74
41 5 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
Found at i:30259657 original size:80 final size:80
Alignment explanation
Indices: 30259506--30259715 Score: 239
Period size: 80 Copynumber: 2.6 Consensus size: 80
30259496 GGACTAAGAT
* * *
30259506 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGATACA
1 CCGAAGGCCTTTGTGCGAGATACTAAA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACA
30259570 AATTCCGGGTTAAG-C
65 AATTCCGGGTTAAGTC
* * **
30259585 CTCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTGTT
1 C-CGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGAT-AC
*
30259650 AAA-TCCGGGTTATGTC
64 AAATTCCGGGTTAAGTC
* * * * * *
30259666 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
30259716 GAACGAGGAG
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
79 37 0.33
80 67 0.60
81 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACAA
ATTCCGGGTTAAGTC
Found at i:30266780 original size:40 final size:40
Alignment explanation
Indices: 30266749--30266960 Score: 243
Period size: 40 Copynumber: 5.3 Consensus size: 40
30266739 GGACTAAGAT
30266749 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
30266789 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
* *
30266829 CCGAAGGCCTTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
* * ** * *
30266869 CCGAAGGCATTCGTGCGAGTTGTTAAA-TCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCC
* * * * * *
30266909 CCGAAGGCA-TTGTGTGAGTTACTAAA-ACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
30266948 CCGAAGGCATTTG
1 CCGAAGGCATTTG
30266961 AACGAGGAGC
Statistics
Matches: 154, Mismatches: 14, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
39 32 0.21
40 119 0.77
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
Found at i:30266833 original size:80 final size:80
Alignment explanation
Indices: 30266696--30266960 Score: 272
Period size: 80 Copynumber: 3.3 Consensus size: 80
30266686 TTGAATGCTG
* * ** **
30266696 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGA-ATATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TGACA-A-ATCCGGGTTAAGCCCCGAAGGCA
30266758 TTTGTGCGAGATAC-AAA
63 TTTGTGCGAGATACTAAA
* *
30266775 TTCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGGCAT
30266839 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
* * ** * *
30266856 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCA-TT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTT
* *
30266920 GTGTGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
30266935 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
30266961 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
79 38 0.24
80 102 0.65
81 16 0.10
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:30266978 original size:79 final size:80
Alignment explanation
Indices: 30266749--30266993 Score: 205
Period size: 80 Copynumber: 3.1 Consensus size: 80
30266739 GGACTAAGAT
* * * * ** *
30266749 CCGAAGG-CATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCATTTGTGCGA-GATA
1 CCGAAGGCCA-TTGTGCGAGATACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-G
*
30266811 C-AAATTCCGGGTTAAGCC
63 CTAAA-TCCGGGTTAAGTC
* * * ** ** *
30266829 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
30266894 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * * *
30266909 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
30266973 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
30266987 CCGAAGG
1 CCGAAGG
30266994 TACGTGATTT
Statistics
Matches: 137, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
78 14 0.10
79 49 0.36
80 67 0.49
81 7 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:30273174 original size:39 final size:39
Alignment explanation
Indices: 30273094--30273271 Score: 252
Period size: 39 Copynumber: 4.6 Consensus size: 39
30273084 AGGATTTTAA
* * * *
30273094 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
* *
30273132 CCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
30273171 CCGGGCTAAGTTCCGAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
30273210 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
30273249 CCGGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
30273272 TGGGTTGGAA
Statistics
Matches: 127, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 20 0.16
39 104 0.82
40 3 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:30275313 original size:39 final size:40
Alignment explanation
Indices: 30275268--30275439 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
30275258 GCTCCTCGTT
* * *
30275268 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
30275308 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
30275347 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
30275387 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
30275427 CAAATGCCTTCGG
1 CAAATGCCTTCGG
30275440 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:30275368 original size:40 final size:39
Alignment explanation
Indices: 30275270--30275492 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
30275260 TCCTCGTTCA
* * * *
30275270 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
30275309 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
30275348 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
30275388 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
30275428 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
30275469 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
30275493 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:30275452 original size:80 final size:79
Alignment explanation
Indices: 30275268--30275492 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
30275258 GCTCCTCGTT
* * * * *
30275268 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
30275332 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
30275347 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
30275412 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
30275427 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
30275491 GA
63 GA
30275493 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:30275501 original size:41 final size:41
Alignment explanation
Indices: 30275424--30275501 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
30275414 TTTGTATCTC
* * *
30275424 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
30275465 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
30275502 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:30283244 original size:39 final size:40
Alignment explanation
Indices: 30283199--30283370 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
30283189 GCTCCTCGTT
* * *
30283199 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
30283239 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
30283278 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
30283318 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
30283358 CAAATGCCTTCGG
1 CAAATGCCTTCGG
30283371 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:30283299 original size:40 final size:39
Alignment explanation
Indices: 30283201--30283423 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
30283191 TCCTCGTTCA
* * * *
30283201 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
30283240 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
30283279 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
30283319 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
30283359 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
30283400 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
30283424 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:30283383 original size:80 final size:79
Alignment explanation
Indices: 30283199--30283423 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
30283189 GCTCCTCGTT
* * * * *
30283199 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
30283263 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
30283278 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
30283343 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
30283358 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
30283422 GA
63 GA
30283424 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:30283432 original size:41 final size:41
Alignment explanation
Indices: 30283355--30283432 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
30283345 TTTGTATCTC
* * *
30283355 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
30283396 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
30283433 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:30286901 original size:19 final size:20
Alignment explanation
Indices: 30286877--30286922 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
30286867 ATTCTGATAT
30286877 ACATGATATGTATGAT-TGC
1 ACATGATATGTATGATATGC
30286896 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
30286916 ACATGAT
1 ACATGAT
30286923 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:30287037 original size:24 final size:25
Alignment explanation
Indices: 30286970--30287053 Score: 109
Period size: 26 Copynumber: 3.4 Consensus size: 25
30286960 AGGAAGTGCA
*
30286970 AAAAGGGCTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
*
30286995 GAAAATGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTTGCCCCAGTTTATC
*
30287021 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATC
30287044 AAAAGAGGCT
1 AAAAG-GGCT
30287054 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 9 0.17
24 13 0.25
25 7 0.13
26 23 0.44
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:30287296 original size:31 final size:31
Alignment explanation
Indices: 30287261--30287351 Score: 112
Period size: 38 Copynumber: 2.7 Consensus size: 31
30287251 CGTTTATAGT
30287261 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
30287292 AAAGGCTTCGGCCCAGTGTTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G---T--AATATGAAATATGA
30287330 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTAATATG
30287352 TTGAGATTGA
Statistics
Matches: 53, Mismatches: 0, Indels: 15
0.78 0.00 0.22
Matches are distributed among these distances:
30 5 0.09
31 15 0.28
33 2 0.04
36 2 0.04
38 29 0.55
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:30290888 original size:27 final size:26
Alignment explanation
Indices: 30290840--30290899 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
30290830 GCGAGCCTGC
*
30290840 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
30290867 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
30290893 CAGATAT
1 CAGATAT
30290900 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:30291703 original size:27 final size:27
Alignment explanation
Indices: 30291641--30291759 Score: 132
Period size: 27 Copynumber: 4.4 Consensus size: 27
30291631 GGGGTAAAAT
* * *
30291641 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
30291668 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
30291695 GGTATTTCTACCTTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
30291722 CGTAATTCTATCCTA-AAGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
30291749 GGTAATTCTAC
1 GGTAATTCTAC
30291760 AACTTATCCA
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 3 0.04
27 72 0.96
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:30291715 original size:54 final size:54
Alignment explanation
Indices: 30291657--30291759 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
30291647 TTTACCCCAC
* * *
30291657 AAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCTTAT
1 AAGGGTATCTCAGTAATTCTACCCTAAAGAGGTATTTCGGTAATTCTACCTTAT
* * *
30291711 AAGGGTATTTCCGTAATTCTATCCTAAAGAGGTATTTCGGTAATTCTAC
1 AAGGGTATCTCAGTAATTCTACCCTAAAGAGGTATTTCGGTAATTCTAC
30291760 AACTTATCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (54 bp):
AAGGGTATCTCAGTAATTCTACCCTAAAGAGGTATTTCGGTAATTCTACCTTAT
Found at i:30294048 original size:12 final size:12
Alignment explanation
Indices: 30294031--30294056 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
30294021 GTTTTGGCAT
30294031 GGCCTGGCACAC
1 GGCCTGGCACAC
30294043 GGCCTGGCACAC
1 GGCCTGGCACAC
30294055 GG
1 GG
30294057 GCGTGTGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.38, G:0.38, T:0.08
Consensus pattern (12 bp):
GGCCTGGCACAC
Found at i:30295537 original size:46 final size:46
Alignment explanation
Indices: 30295388--30295558 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
30295378 TCATTTGTGC
* * *
30295388 GCTAGTGTAAGACATGTCTGGGACATGCATCGATCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-GATGAGA
* * * * * *
30295434 GCTAGTGTATGACCATGCCTGGGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGATGAGA
30295482 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATG-AGA
* *
30295528 GCCAGTGTAAGACATGTTTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
30295559 AGCTACGAGA
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
46 54 0.52
47 27 0.26
48 22 0.21
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGAGA
Found at i:30308512 original size:27 final size:28
Alignment explanation
Indices: 30308469--30308523 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
30308459 GAATGTTTCC
* *
30308469 ATTGATGAATATGTATGAGT-TTTGATG
1 ATTGATGAAAATGTATGAATATTTGATG
30308496 ATTGATGAAAAAT-TATGAATATTTGATG
1 ATTGATG-AAAATGTATGAATATTTGATG
30308524 TTAGTTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.36, C:0.00, G:0.22, T:0.42
Consensus pattern (28 bp):
ATTGATGAAAATGTATGAATATTTGATG
Found at i:30309092 original size:40 final size:40
Alignment explanation
Indices: 30309025--30309100 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
30309015 CGGTTAAGGG
* * *
30309025 TGGCACTTAGTGTGTGGTTCAATATAGCTTCGGCTAAATT
1 TGGCACTTAGTGTGCGATTCAAGATAGCTTCGGCTAAATT
**
30309065 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCGATTCAAGATAGCTTCGGCTA
30309101 TGTACGTGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.36
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCAAGATAGCTTCGGCTAAATT
Found at i:30309298 original size:28 final size:28
Alignment explanation
Indices: 30309256--30309321 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
30309246 ATCTTCGCTG
* * *
30309256 TCTCGCACACTAAGTG-CCTTACTTAATA
1 TCTCGCACACCAAGTGTCATT-CTGAATA
30309284 TCTCGCACACCAAGTGTCATTCTGAATA
1 TCTCGCACACCAAGTGTCATTCTGAATA
*
30309312 TTTCGCACAC
1 TCTCGCACAC
30309322 TATGTGCCAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 30 0.91
29 3 0.09
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (28 bp):
TCTCGCACACCAAGTGTCATTCTGAATA
Found at i:30316380 original size:48 final size:48
Alignment explanation
Indices: 30316324--30316463 Score: 226
Period size: 48 Copynumber: 2.9 Consensus size: 48
30316314 TCATACCGAA
* * *
30316324 GCCATATCCTAGATATAGTCTTACACGTAATCTCATATCGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACGTGATCTCATATCGATGCTGAT
*
30316372 GCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACGTGATCTCATATCGATGCTGAT
* *
30316420 GCCATATCCCAGATATGGACTTACACATGATCTCATATCGATGC
1 GCCATATCCCAGATATGGTCTTACACGTGATCTCATATCGATGC
30316464 CATGTCCCAG
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (48 bp):
GCCATATCCCAGATATGGTCTTACACGTGATCTCATATCGATGCTGAT
Found at i:30316485 original size:42 final size:42
Alignment explanation
Indices: 30316196--30316525 Score: 171
Period size: 42 Copynumber: 7.7 Consensus size: 42
30316186 TCGTTTACTT
* *
30316196 GATGCCATAGT-CCA-ACTATGGTCTTACATGATG-TCTCACATC
1 GATGCCATA-TCCCAGAC-ATGGTCTTACA-CATGATCTCATATC
* * * * * *
30316238 GATGCCATGTCCCAGGCATGGTCTTATACA-AATCACATACC
1 GATGCCATATCCCAGACATGGTCTTACACATGATCTCATATC
*** * * * *
30316279 GATGCTGCATCCCAGACACGATCTTACACGA-AATCTCATACC
1 GATGCCATATCCCAGACATGGTCTTACAC-ATGATCTCATATC
* * * * * *
30316321 GAAGCCATATCCTAGATATAGTCTTACACGTAATCTCATATCGATGC
1 GATGCCATATCCCAGACATGGTCTTACACATGATCTC--AT--AT-C
* **
30316368 TGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGC
1 -GATGCCATATCCCAGACATGGTCTTACACATGATCTC--AT--AT-C
* *
30316416 TGATGCCATATCCCAGATATGGACTTACACATGATCTCATATC
1 -GATGCCATATCCCAGACATGGTCTTACACATGATCTCATATC
*
30316459 GATGCCATGTCCCAGACATGGTCTT--ACATG---TCATCA-C
1 GATGCCATATCCCAGACATGGTCTTACACATGATCTCAT-ATC
30316496 GATGCCATATCCCA-ACTATGGTCTTACACA
1 GATGCCATATCCCAGAC-ATGGTCTTACACA
30316526 CTATTACGAT
Statistics
Matches: 233, Mismatches: 40, Indels: 33
0.76 0.13 0.11
Matches are distributed among these distances:
36 2 0.01
37 26 0.11
38 1 0.00
39 3 0.01
40 5 0.02
41 29 0.12
42 80 0.34
43 2 0.01
44 4 0.02
46 3 0.01
47 1 0.00
48 77 0.33
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (42 bp):
GATGCCATATCCCAGACATGGTCTTACACATGATCTCATATC
Found at i:30316535 original size:37 final size:38
Alignment explanation
Indices: 30316417--30316561 Score: 120
Period size: 37 Copynumber: 3.8 Consensus size: 38
30316407 TATCGATGCT
*
30316417 GATGCCATATCCCAGA-TATGGACTTACACATGATCTCAT-ATC
1 GATGCCATATCCCA-ACTATGGTCTTACAC---A-CTCATCA-C
* **
30316459 GATGCCATGTCCCAGAC-ATGGTCTTACA-TGTCATCAC
1 GATGCCATATCCCA-ACTATGGTCTTACACACTCATCAC
*
30316496 GATGCCATATCCCAACTATGGTCTTACACACT-ATTAC
1 GATGCCATATCCCAACTATGGTCTTACACACTCATCAC
* * *
30316533 GATGCCATAGCCTAGCTATGGTCTTACAC
1 GATGCCATATCCCAACTATGGTCTTACAC
30316562 GTACTCATAT
Statistics
Matches: 88, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
36 2 0.02
37 59 0.67
38 2 0.02
42 25 0.28
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (38 bp):
GATGCCATATCCCAACTATGGTCTTACACACTCATCAC
Found at i:30318119 original size:17 final size:18
Alignment explanation
Indices: 30318094--30318127 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
30318084 AGTACTCAAA
*
30318094 GTAACAATCA-CAAAAAC
1 GTAAAAATCATCAAAAAC
30318111 GTAAAAATCATCAAAAA
1 GTAAAAATCATCAAAAA
30318128 TCGAGTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.62, C:0.18, G:0.06, T:0.15
Consensus pattern (18 bp):
GTAAAAATCATCAAAAAC
Found at i:30318666 original size:28 final size:28
Alignment explanation
Indices: 30318626--30318778 Score: 198
Period size: 28 Copynumber: 5.5 Consensus size: 28
30318616 ACAGTACGGT
*
30318626 ACTTAGTGTGCGAGACATTGATTATGGC
1 ACTTAGTGTGCGAGACATTGAGTATGGC
* * *
30318654 ACTTAGTTTGCGAGACATTGATTGTGGC
1 ACTTAGTGTGCGAGACATTGAGTATGGC
* * *
30318682 ACTTAGTGTGTGAGACATCGAGCATGGC
1 ACTTAGTGTGCGAGACATTGAGTATGGC
** *
30318710 ACTTAGTGTGCGAGACATTGAACATGAC
1 ACTTAGTGTGCGAGACATTGAGTATGGC
* *
30318738 ACTTAGTGTGCGAGACATTGGGTACGGC
1 ACTTAGTGTGCGAGACATTGAGTATGGC
30318766 ACTTAGTGTGCGA
1 ACTTAGTGTGCGA
30318779 AATATCGAGT
Statistics
Matches: 108, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 108 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (28 bp):
ACTTAGTGTGCGAGACATTGAGTATGGC
Found at i:30318786 original size:84 final size:84
Alignment explanation
Indices: 30318626--30318787 Score: 225
Period size: 84 Copynumber: 1.9 Consensus size: 84
30318616 ACAGTACGGT
** * * * **
30318626 ACTTAGTGTGCGAGACATTGATTATGGCACTTAGTTTGCGAGACATTGATTGTGGCACTTAGTGT
1 ACTTAGTGTGCGAGACATTGAACATGACACTTAGTGTGCGAGACATTGAGTACGGCACTTAGTGT
* *
30318691 GTGAGACATCGAGCATGGC
66 GCGAAACATCGAGCATGGC
*
30318710 ACTTAGTGTGCGAGACATTGAACATGACACTTAGTGTGCGAGACATTGGGTACGGCACTTAGTGT
1 ACTTAGTGTGCGAGACATTGAACATGACACTTAGTGTGCGAGACATTGAGTACGGCACTTAGTGT
*
30318775 GCGAAATATCGAG
66 GCGAAACATCGAG
30318788 TATTCAACGG
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (84 bp):
ACTTAGTGTGCGAGACATTGAACATGACACTTAGTGTGCGAGACATTGAGTACGGCACTTAGTGT
GCGAAACATCGAGCATGGC
Found at i:30320513 original size:40 final size:40
Alignment explanation
Indices: 30320464--30320690 Score: 327
Period size: 40 Copynumber: 5.8 Consensus size: 40
30320454 ATAACCACAA
* * * *
30320464 GCAC-AATGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
* *
30320503 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATC-T
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
30320542 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
30320582 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
* *
30320622 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTT
* *
30320662 GCATAAATGCCTTC-GGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
30320691 GTATTCAAAT
Statistics
Matches: 174, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 54 0.31
40 116 0.67
41 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
Found at i:30320569 original size:79 final size:80
Alignment explanation
Indices: 30320464--30320690 Score: 318
Period size: 79 Copynumber: 2.9 Consensus size: 80
30320454 ATAACCACAA
* * *
30320464 GCAC-AATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
30320528 CGGATATATCATC-T
66 CGGATATATCAACTT
* *
30320542 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
30320607 CGGATATATCAACTT
66 CGGATATATCAACTT
* * * * *
30320622 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTC-GGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
30320685 CCGGAT
65 CCGGAT
30320691 GTATTCAAAT
Statistics
Matches: 136, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
78 4 0.03
79 81 0.60
80 47 0.35
81 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTT
Found at i:30320683 original size:119 final size:118
Alignment explanation
Indices: 30320464--30320690 Score: 341
Period size: 119 Copynumber: 1.9 Consensus size: 118
30320454 ATAACCACAA
* *
30320464 GCACAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCC
1 GCACAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* *
30320529 GGATATATCATCTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 GGATAAATCATCTGCACAAATGCCTTCGGGACTTAGCCCGGATATATCAACTT
* * *
30320582 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 GCAC-AATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
30320647 CGGATAAAATCA-CTAGCATAAATGCCTTC-GGACTTAGCCCGGAT
65 CGGAT-AAATCATCT-GCACAAATGCCTTCGGGACTTAGCCCGGAT
30320691 GTATTCAAAT
Statistics
Matches: 98, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
118 4 0.04
119 76 0.78
120 18 0.18
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (118 bp):
GCACAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
GGATAAATCATCTGCACAAATGCCTTCGGGACTTAGCCCGGATATATCAACTT
Found at i:30328953 original size:40 final size:40
Alignment explanation
Indices: 30328901--30329129 Score: 327
Period size: 40 Copynumber: 5.8 Consensus size: 40
30328891 ATAACCACAA
* * * *
30328901 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
30328941 GCACGAATGCCTTCGGGTCTTAGCCC-GATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
30328980 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
30329020 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
30329060 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
30329100 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
30329130 GTATTCAAAT
Statistics
Matches: 174, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.20
40 135 0.78
41 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:30339089 original size:12 final size:12
Alignment explanation
Indices: 30339072--30339101 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
30339062 TCAGGGAGTT
*
30339072 ACACGGGGTAGG
1 ACACGGGCTAGG
30339084 ACACGGGCTAGG
1 ACACGGGCTAGG
30339096 ACACGG
1 ACACGG
30339102 CCATGTGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.23, G:0.43, T:0.07
Consensus pattern (12 bp):
ACACGGGCTAGG
Found at i:30350368 original size:39 final size:40
Alignment explanation
Indices: 30350258--30350408 Score: 216
Period size: 40 Copynumber: 3.8 Consensus size: 40
30350248 GGATATAACT
* * * *
30350258 ACTCGCTCAAATGCCTTCGAGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
30350298 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
30350338 ACTCGCACAAATGCC-TCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
30350377 ACTCACGCAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
30350409 TTATCATCCA
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 37 0.37
40 62 0.61
41 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:30350378 original size:79 final size:80
Alignment explanation
Indices: 30350258--30350408 Score: 216
Period size: 79 Copynumber: 1.9 Consensus size: 80
30350248 GGATATAACT
* * *
30350258 ACTCGCTCAAATGCCTTCGAGACATAGCCCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGAGACATAGCCCGGTTAGAGTAACTCACACAAATGCCTTCGGGACTT
30350323 AGCCCGGATTTAGTA
66 AGCCCGGATTTAGTA
* * * *
30350338 ACTCGCACAAATGCC-TCGGGACTTAGCCCGGATT-TAGTAACTCACGCAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGAGACATAGCCCGG-TTAGAGTAACTCACACAAATGCCTTCGGGACT
30350401 TAGCCCGG
65 TAGCCCGG
30350409 TTATCATCCA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 47 0.75
80 16 0.25
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGAGACATAGCCCGGTTAGAGTAACTCACACAAATGCCTTCGGGACTT
AGCCCGGATTTAGTA
Found at i:30358367 original size:40 final size:40
Alignment explanation
Indices: 30358288--30358437 Score: 216
Period size: 39 Copynumber: 3.8 Consensus size: 40
30358278 GGATATAACT
* * *
30358288 ACTCGCTCAAATGCCTTC-GGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
30358327 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
30358367 ACTCGCACAAATGCC-TCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
30358406 ACTCGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
30358438 TTATCATCCA
Statistics
Matches: 101, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
39 53 0.52
40 46 0.46
41 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:30358407 original size:79 final size:79
Alignment explanation
Indices: 30358288--30358437 Score: 216
Period size: 79 Copynumber: 1.9 Consensus size: 79
30358278 GGATATAACT
*
30358288 ACTCGCTCAAATGCCTTCGGACATAGCCCGGTTAGAGTAACTCGCACA-ATTGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGACATAGCCCGGTTAGAGTAACTCGCACAGA-TGCCTTCGGGACTT
30358352 AGCCCGGATTTAGTA
65 AGCCCGGATTTAGTA
* * *
30358367 ACTCGCACAAATGCC-TCGGGACTTAGCCCGGATT-TAGTAACTCGCGCAGATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTC-GGACATAGCCCGG-TTAGAGTAACTCGCACAGATGCCTTCGGGACT
30358430 TAGCCCGG
64 TAGCCCGG
30358438 TTATCATCCA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
78 2 0.03
79 59 0.92
80 3 0.05
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGACATAGCCCGGTTAGAGTAACTCGCACAGATGCCTTCGGGACTTA
GCCCGGATTTAGTA
Found at i:30366384 original size:40 final size:39
Alignment explanation
Indices: 30366260--30366407 Score: 210
Period size: 39 Copynumber: 3.8 Consensus size: 39
30366250 AGATATAACT
* * *
30366260 ACTCGCTCAAATGCCTTCGGGACATAGCCCG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATT-TAGTA
*
30366299 ACTCGCACAATTGCCTTCGGGACTTAGCCCGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTTAGTA
*
30366338 ACTCGCACAAATGCCTTCGGGACTTAGCCTGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCC-CGATTTAGTA
*
30366378 ACTCGCACAGATGCCTTC-GGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
30366408 GTTATCATCC
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 70 0.71
40 28 0.28
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTTAGTA
Found at i:30374391 original size:42 final size:43
Alignment explanation
Indices: 30374331--30374414 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 43
30374321 TGTCCTTAGT
30374331 CTAATCAGAAATGAGAAAATCAATTGAAATACTAATATGTCAA
1 CTAATCAGAAATGAGAAAATCAATTGAAATACTAATATGTCAA
30374374 CTAATCAG-AATGAGAAAATCAATTGAAATACTAATATGTCA
1 CTAATCAGAAATGAGAAAATCAATTGAAATACTAATATGTCA
30374415 TATATCTAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 33 0.80
43 8 0.20
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (43 bp):
CTAATCAGAAATGAGAAAATCAATTGAAATACTAATATGTCAA
Found at i:30376249 original size:53 final size:53
Alignment explanation
Indices: 30376186--30376291 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
30376176 TCAGCATAGG
30376186 ACTTCTATCTGTCTGAAGTAGCTTTTAGCCTTTTCACAAATCATTTGGACTTT
1 ACTTCTATCTGTCTGAAGTAGCTTTTAGCCTTTTCACAAATCATTTGGACTTT
30376239 ACTTCTATCTGTCTGAAGTAGCTTTTAGCCTTTTCACAAATCATTTGGACTTT
1 ACTTCTATCTGTCTGAAGTAGCTTTTAGCCTTTTCACAAATCATTTGGACTTT
30376292 GTCTTCTGTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (53 bp):
ACTTCTATCTGTCTGAAGTAGCTTTTAGCCTTTTCACAAATCATTTGGACTTT
Found at i:30376381 original size:25 final size:25
Alignment explanation
Indices: 30376347--30376396 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
30376337 ATCCAACTTA
30376347 GCACAATGACCACCTCCGGATGTAC
1 GCACAATGACCACCTCCGGATGTAC
*
30376372 GCACAATGACCACCTTCGGATGTAC
1 GCACAATGACCACCTCCGGATGTAC
30376397 TAACATCCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.34, G:0.20, T:0.18
Consensus pattern (25 bp):
GCACAATGACCACCTCCGGATGTAC
Found at i:30376968 original size:29 final size:29
Alignment explanation
Indices: 30376922--30377031 Score: 100
Period size: 29 Copynumber: 3.9 Consensus size: 29
30376912 TGTGAGCATG
* *
30376922 AATATGAATATGA-CTGGGCCTAACGGGC
1 AATATAAATATGATCTGGGCCTAATGGGC
*
30376950 AATATAAATGTGATCTGGGCCTAATGGGTC
1 AATATAAATATGATCTGGGCCTAATGGG-C
* ** *
30376980 -ATATACAGGTGATTTGGGCCTAATGGGC
1 AATATAAATATGATCTGGGCCTAATGGGC
* * *
30377008 CATATGAATATGAT-TGGGCTTAAT
1 AATATAAATATGATCTGGGCCTAAT
30377032 AGGCTAAATA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 21 0.31
29 46 0.68
30 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (29 bp):
AATATAAATATGATCTGGGCCTAATGGGC
Found at i:30377939 original size:18 final size:18
Alignment explanation
Indices: 30377893--30377945 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
30377883 TGTAATAAAG
30377893 TTTTCATTATGTTATTATTA
1 TTTTCATTA--TTATTATTA
* **
30377913 CTTGAATTATTATTATTA
1 TTTTCATTATTATTATTA
*
30377931 TTTTCATTATAATTA
1 TTTTCATTATTATTA
30377946 CGAGAAGTTG
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 20 0.77
20 6 0.23
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTCATTATTATTATTA
Found at i:30383112 original size:16 final size:16
Alignment explanation
Indices: 30383091--30383122 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
30383081 GTTGTAACGC
30383091 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
30383107 CCCAAAAGTCCCGAAA
1 CCCAAAAATCCCGAAA
30383123 TATTGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.38, G:0.09, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:30384705 original size:28 final size:29
Alignment explanation
Indices: 30384595--30384709 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
30384585 GTGAGCATGA
* *
30384595 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
30384623 ATATAAATGTGATTTGGGCCTAATGAGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
30384652 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
30384681 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
30384709 A
1 A
30384710 GTTATAGGTA
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 28 0.38
29 44 0.60
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:30386434 original size:119 final size:120
Alignment explanation
Indices: 30386280--30386523 Score: 481
Period size: 120 Copynumber: 2.0 Consensus size: 120
30386270 CCTCATATCG
30386280 ATGACTTGTTTGATCAACTAAAGGGTGCTTCTGTCTTCTCTAAGATCGATTTGAG-TCTAGTTAC
1 ATGACTTGTTTGATCAACTAAAGGGTGCTTCTGTCTTCTCTAAGATCGATTTGAGATCTAGTTAC
30386344 TATCAGTTGAAAGTAAAAGATAGTGATGTACCTAAGACGGTCTTTCGTACGTTTT
66 TATCAGTTGAAAGTAAAAGATAGTGATGTACCTAAGACGGTCTTTCGTACGTTTT
30386399 ATGACTTGTTTGATCAACTAAAGGGTGCTTCTGTCTTCTCTAAGATCGATTTGAGATCTAGTTAC
1 ATGACTTGTTTGATCAACTAAAGGGTGCTTCTGTCTTCTCTAAGATCGATTTGAGATCTAGTTAC
30386464 TATCAGTTGAAAGTAAAAGATAGTGATGTACCTAAGACGGTCTTTCGTACGTTTT
66 TATCAGTTGAAAGTAAAAGATAGTGATGTACCTAAGACGGTCTTTCGTACGTTTT
30386519 ATGAC
1 ATGAC
30386524 CACTATGAAT
Statistics
Matches: 124, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
119 55 0.44
120 69 0.56
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.36
Consensus pattern (120 bp):
ATGACTTGTTTGATCAACTAAAGGGTGCTTCTGTCTTCTCTAAGATCGATTTGAGATCTAGTTAC
TATCAGTTGAAAGTAAAAGATAGTGATGTACCTAAGACGGTCTTTCGTACGTTTT
Found at i:30403028 original size:25 final size:25
Alignment explanation
Indices: 30402980--30403028 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
30402970 CATAATTGAA
* *
30402980 ATGAAATGAATTGATTTTGCATATT
1 ATGAAATGAATTGATTATGAATATT
30403005 ATGAAAT-ATATTGATTATGAATAT
1 ATGAAATGA-ATTGATTATGAATAT
30403029 ATGTGTATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.43
Consensus pattern (25 bp):
ATGAAATGAATTGATTATGAATATT
Found at i:30403472 original size:15 final size:15
Alignment explanation
Indices: 30403440--30403478 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
30403430 ATGATAAATG
30403440 AATATGAGATGAGAA
1 AATATGAGATGAGAA
*
30403455 AATATTGAGATGA-CA
1 AATA-TGAGATGAGAA
30403470 AATATGAGA
1 AATATGAGA
30403479 AATGATTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 9 0.41
16 8 0.36
ACGTcount: A:0.51, C:0.03, G:0.23, T:0.23
Consensus pattern (15 bp):
AATATGAGATGAGAA
Found at i:30403482 original size:43 final size:43
Alignment explanation
Indices: 30403413--30403498 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
30403403 TATGTGATTG
* * *
30403413 ATATTGTAATGACAATGATGATAAATGAATATGAGATGAGAAA
1 ATATTGTAATGACAATGATGAGAAATGAATATGAAACGAGAAA
*
30403456 ATATTG-AGATGACAAAT-ATGAGAAATGATTATGAAACGAGAAA
1 ATATTGTA-ATGAC-AATGATGAGAAATGAATATGAAACGAGAAA
30403499 TGAAATATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 33 0.89
44 3 0.08
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (43 bp):
ATATTGTAATGACAATGATGAGAAATGAATATGAAACGAGAAA
Found at i:30405674 original size:4 final size:4
Alignment explanation
Indices: 30405665--30405698 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
30405655 TTAGTTTCGT
* *
30405665 TTTC TTTC TTTC ATTC TTTC TTTA TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
30405699 AGGTTTTCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:30413897 original size:46 final size:45
Alignment explanation
Indices: 30413845--30414011 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 45
30413835 TGTAACCCGC
*
30413845 CCATAAGTGAAGTCGGACTCAACTCAACAAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTC-GGCATTCGCAT
*
30413891 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGCATTCGC-A--T
* *** * * * *
30413937 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACAAGCTC-GGCATTCGCAT
30413984 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
30414012 GAGTTCGGAT
Statistics
Matches: 99, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 58 0.59
47 29 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGCATTCGCAT
Done.