Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 96 of 333
Found at i:30418462 original size:54 final size:54
Alignment explanation
Indices: 30418270--30418532 Score: 271
Period size: 54 Copynumber: 4.9 Consensus size: 54
30418260 TTTCCATTTT
* * * * * *
30418270 GAACTTACCATTGCCATGTCTAGACATGGTCTTACGTGATATCCTTACCTTAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * * * **
30418323 GAACTTACCAAGGCCATGCCTTGGCGTGGTCTTACATTG-GA-CCTTTGTCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACA-TGATATCC-TTACCTTATA
* * * * * *
30418377 GTAACTAATCAATGCCATGTCTTGACATGGTCTTACATGCTTTCTTTACCTTATA
1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * *
30418432 GAACTTTTCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* *
30418486 GAACTTTTCAATACCATGCCTTGGCATGGTCTTACATGATATCCTTA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTA
30418533 TCCTACCAAA
Statistics
Matches: 173, Mismatches: 31, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
52 2 0.01
53 37 0.21
54 95 0.55
55 38 0.22
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
Found at i:30418497 original size:108 final size:108
Alignment explanation
Indices: 30418281--30418532 Score: 305
Period size: 108 Copynumber: 2.3 Consensus size: 108
30418271 AACTTACCAT
* *
30418281 TGCCATGTCTAGACATGGTCTTACGTGATATCCTTACCTTATGAACTTACCAAGGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTATGAACTTACCAAGGCCATGCCTTG
* *
30418346 GCGTGGTCTTACATTGGACCTTTGTCTTATAGTAACTAATCAA
66 GCATGGTCTTACATTGGACCTTTGCCTTATAGTAACTAATCAA
* * * ** *
30418389 TGCCATGTCTTGACATGGTCTTACATGCTTTCTTTACCTTATAGAACTTTTCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTAT-GAACTTACCAAGGCCATGCCTT
**
30418454 GGCATGGTCTTACA-T-GATTTCC-TTGCCTTATAG-AACTTTTCAA
65 GGCATGGTCTTACATTGGA---CCTTTGCCTTATAGTAACTAATCAA
* * *
30418497 TACCATGCCTTGGCATGGTCTTACATGATATCCTTA
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTA
30418533 TCCTACCAAA
Statistics
Matches: 122, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
107 2 0.02
108 76 0.62
109 42 0.34
110 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTATGAACTTACCAAGGCCATGCCTTG
GCATGGTCTTACATTGGACCTTTGCCTTATAGTAACTAATCAA
Found at i:30418628 original size:47 final size:46
Alignment explanation
Indices: 30418510--30418631 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 46
30418500 CATGCCTTGG
* *
30418510 CATGGTCTTACATGATATCCTTATCCTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATG-TATCCTTGTCTTACCAAATGCCATGTTCCAAA
* * *
30418557 CATGGTCTTATAGGGTATCATTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACA-TGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
30418604 CATGGTCTTACATCGTATCCTTGTCTTA
1 CATGGTCTTACAT-GTATCCTTGTCTTA
30418632 GTGCCAAAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
47 64 0.98
48 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (46 bp):
CATGGTCTTACATGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:30418854 original size:44 final size:44
Alignment explanation
Indices: 30418770--30418854 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
30418760 ATCTTTAACC
* * *
30418770 GTCAATTCCTCCTTAAATGCCATGTTATGAACATGTACTTTTCT
1 GTCAATTCCTCCTTAAATGCCATGGTATCAACATGGACTTTTCT
* *
30418814 GTCAATTCTTCCTTAACTGCCATGGTA-CAACCATGGACTTT
1 GTCAATTCCTCCTTAAATGCCATGGTATCAA-CATGGACTTT
30418855 GAGATATCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTATCAACATGGACTTTTCT
Found at i:30424692 original size:108 final size:107
Alignment explanation
Indices: 30424526--30424776 Score: 308
Period size: 108 Copynumber: 2.3 Consensus size: 107
30424516 AACTTACCAT
*
30424526 TGCCATGTCTAGACATGGTCTTACGTGATATCCTTACCTTATGAACTCACCAAGGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACGTGATATCCTTACCTTATGAACTCACCAAGGCCATGCCTTG
30424591 GCATGGTCTTACATG-GGACCTTTGCCTTATAGTAACTAATCAA
66 GCATGGTCTTACATGAGGACC-TTGCCTTATAG-AACTAATCAA
* * * *** *
30424634 TGCCATGTCTTGACATGGTCTTAC-TGCTTTCTTTACCTTATAGAACTTTTCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACGTGATATCCTTACCTTAT-GAACTCACCAAGGCCATGCCTT
*** ** *
30424698 GGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTTTTTAA
65 GGCATGGTCTTACATGAGGACCTTGCCTTATAGAACTAATCAA
* * *
30424741 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTA
1 TGCCATGTCTTGACATGGTCTTACGTGATATCCTTA
30424777 TCCTACCAAA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
107 43 0.36
108 76 0.63
109 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (107 bp):
TGCCATGTCTTGACATGGTCTTACGTGATATCCTTACCTTATGAACTCACCAAGGCCATGCCTTG
GCATGGTCTTACATGAGGACCTTGCCTTATAGAACTAATCAA
Found at i:30424727 original size:54 final size:54
Alignment explanation
Indices: 30424515--30424776 Score: 278
Period size: 54 Copynumber: 4.9 Consensus size: 54
30424505 TTTCCATTTT
* * * * * *
30424515 GAACTTACCATTGCCATGTCTAGACATGGTCTTACGTGATATCCTTACCTTAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * * ** *
30424568 GAACTCACCAAGGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTACCTTATA
* * * * * *
30424622 GTAACTAATCAATGCCATGTCTTGACATGGTCTTAC-TGCTTTCTTTACCTTATA
1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * *
30424676 GAACTTTTCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* *
30424730 GAACTTTTTAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTA
30424777 TCCTACCAAA
Statistics
Matches: 174, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
52 2 0.01
53 70 0.40
54 72 0.41
55 30 0.17
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
Found at i:30424870 original size:47 final size:46
Alignment explanation
Indices: 30424754--30424875 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 46
30424744 CATGCCTTGG
* *
30424754 CATGGTCTTACATGATATCCTTATCCTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATG-TATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
30424801 CATGGTCTTACAGGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACA-TGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
30424848 CATGGTCTTACATCGTATCCTTGTCTTA
1 CATGGTCTTACAT-GTATCCTTGTCTTA
30424876 GTGCCAAAGC
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
47 68 0.99
48 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.34
Consensus pattern (46 bp):
CATGGTCTTACATGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:30433086 original size:11 final size:11
Alignment explanation
Indices: 30433070--30433104 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
30433060 TAACCTTTGC
30433070 AAAAAGTTATT
1 AAAAAGTTATT
*
30433081 AAAAAGTTACT
1 AAAAAGTTATT
*
30433092 AAAAATTTATT
1 AAAAAGTTATT
30433103 AA
1 AA
30433105 GCTAAAATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (11 bp):
AAAAAGTTATT
Found at i:30433404 original size:8 final size:8
Alignment explanation
Indices: 30433391--30433418 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
30433381 AAAAATCATT
30433391 ATTTGTGA
1 ATTTGTGA
30433399 ATTTGTGA
1 ATTTGTGA
30433407 ATTTGTGA
1 ATTTGTGA
30433415 ATTT
1 ATTT
30433419 TGCATTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.54
Consensus pattern (8 bp):
ATTTGTGA
Found at i:30439702 original size:39 final size:40
Alignment explanation
Indices: 30439657--30439824 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
30439647 CGGGGTTTAG
* * *
30439657 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
30439696 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
30439736 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
30439776 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
30439817 CCGGATAT
1 CCGGATAT
30439825 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:30439807 original size:41 final size:40
Alignment explanation
Indices: 30439680--30439824 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
30439670 CTCGCACAAG
* * * * *
30439680 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
30439720 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
30439760 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
30439801 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
30439825 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:30447537 original size:80 final size:79
Alignment explanation
Indices: 30447453--30447624 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
30447443 GGACTAAGAT
*
30447453 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
30447517 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
30447533 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
30447598 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
30447612 CCGAAGGCATTTG
1 CCGAAGGCATTTG
30447625 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:30447604 original size:39 final size:39
Alignment explanation
Indices: 30447453--30447622 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 39
30447443 GGACTAAGAT
*
30447453 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
30447493 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
30447533 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
30447573 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
30447612 CCGAAGGCATT
1 CCGAAGGCATT
30447623 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
39 38 0.32
40 75 0.64
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:30447642 original size:79 final size:80
Alignment explanation
Indices: 30447480--30447657 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
30447470 AGATACAAAT
* * * *
30447480 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
30447545 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
30447560 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
30447624 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
30447639 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
30447658 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:30455583 original size:27 final size:27
Alignment explanation
Indices: 30455549--30455604 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
30455539 AGCATGGCTG
30455549 CCAGAACAGATA-ATCGCGGCAGAGCCA
1 CCAGAACAGATATAT-GCGGCAGAGCCA
*
30455576 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGCGGCAGAGCCA
30455603 CC
1 CC
30455605 TGGAAAGAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.36, C:0.29, G:0.25, T:0.11
Consensus pattern (27 bp):
CCAGAACAGATATATGCGGCAGAGCCA
Found at i:30457053 original size:24 final size:24
Alignment explanation
Indices: 30457018--30457070 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
30457008 CCAACACTAT
*
30457018 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAACTCCTAAATCC
*
30457042 TCTCCCTTATCAACTCCTAAATCC
1 TCTCCCTAATCAACTCCTAAATCC
*
30457066 CCTCC
1 TCTCC
30457071 TGACAGACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.23, C:0.45, G:0.02, T:0.30
Consensus pattern (24 bp):
TCTCCCTAATCAACTCCTAAATCC
Found at i:30463347 original size:27 final size:26
Alignment explanation
Indices: 30463289--30463398 Score: 139
Period size: 27 Copynumber: 4.1 Consensus size: 26
30463279 AGCATGGCTG
* * *
30463289 CCAGAATAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
30463315 CTAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
30463342 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
30463369 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
30463396 CCA
1 CCA
30463399 AGACGCTTCC
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 13 0.18
27 59 0.80
28 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:30464672 original size:24 final size:24
Alignment explanation
Indices: 30464637--30464737 Score: 175
Period size: 24 Copynumber: 4.2 Consensus size: 24
30464627 CCAACATTGT
* *
30464637 TCTCCCTAATCAGCTCCTAAATAC
1 TCTCCCTTATCAGCTCCTAAATCC
30464661 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
30464685 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
30464709 TCTCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
30464733 TCTCC
1 TCTCC
30464738 TGACAGACTT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 74 1.00
ACGTcount: A:0.23, C:0.42, G:0.03, T:0.33
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:30468098 original size:16 final size:15
Alignment explanation
Indices: 30468073--30468116 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
30468063 AAAACATCTC
30468073 AAAAGAATAAAAATAA
1 AAAAGAATAAAAA-AA
*
30468089 AAAAGCATAAAAAAA
1 AAAAGAATAAAAAAA
30468104 AAAAGAATAAAAA
1 AAAAGAATAAAAA
30468117 GTCATAGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 14 0.54
16 12 0.46
ACGTcount: A:0.82, C:0.02, G:0.07, T:0.09
Consensus pattern (15 bp):
AAAAGAATAAAAAAA
Found at i:30476372 original size:49 final size:47
Alignment explanation
Indices: 30476312--30476574 Score: 391
Period size: 47 Copynumber: 5.6 Consensus size: 47
30476302 GATAATTGTG
* * *
30476312 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
30476359 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
30476408 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
30476455 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
30476502 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
30476549 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
30476575 TCCCGAAGGG
Statistics
Matches: 197, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 151 0.77
49 46 0.23
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:30479447 original size:22 final size:22
Alignment explanation
Indices: 30479401--30479450 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
30479391 TATCAAGTAT
*
30479401 AAAAAGAGAGAGAGAGAGAAAA
1 AAAAAGAGAGAGAGAGACAAAA
30479423 AAAAAGAGA-AGA-AGACATAAGA
1 AAAAAGAGAGAGAGAGACA-AA-A
30479445 AAAAAG
1 AAAAAG
30479451 GAATATTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 5 0.20
22 16 0.64
ACGTcount: A:0.70, C:0.02, G:0.26, T:0.02
Consensus pattern (22 bp):
AAAAAGAGAGAGAGAGACAAAA
Found at i:30484231 original size:40 final size:40
Alignment explanation
Indices: 30484157--30484272 Score: 144
Period size: 40 Copynumber: 2.9 Consensus size: 40
30484147 GATAACTGGA
* ** *
30484157 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCCGGG
* * *
30484197 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTATGCGAGTTG-TTATATCCGGG
*
30484237 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
1 CTAAGACCCGAAGGCATTTATGCGAGTTGTTATATC
30484273 TGGCTAAATC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.03
40 59 0.94
41 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCCGGG
Found at i:30487367 original size:39 final size:40
Alignment explanation
Indices: 30487266--30487494 Score: 258
Period size: 39 Copynumber: 5.8 Consensus size: 40
30487256 TTGAATGATG
* *
30487266 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
30487305 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
30487346 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
30487385 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
30487424 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
30487463 AACCGGGCTATGT-CCGAAGGCATTTGAGCGAG
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
30487495 GAGCTATATC
Statistics
Matches: 168, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
39 92 0.55
40 63 0.38
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:30487461 original size:79 final size:79
Alignment explanation
Indices: 30487266--30487494 Score: 293
Period size: 79 Copynumber: 2.9 Consensus size: 79
30487256 TTGAATGATG
* * * *
30487266 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCGAAGGCATT
*
30487330 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
* *
30487346 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAGCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCGAAGGCATTT
*
30487409 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * * *
30487424 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTG
*
30487489 AGCGAG
66 TGCGAG
30487495 GAGCTATATC
Statistics
Matches: 130, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
78 36 0.28
79 75 0.58
80 19 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:30487507 original size:118 final size:119
Alignment explanation
Indices: 30487266--30487494 Score: 295
Period size: 118 Copynumber: 1.9 Consensus size: 119
30487256 TTGAATGATG
*
30487266 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * *
30487331 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
66 GTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAGCGAGATACTAAT
* * * **
30487385 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
30487447 TTGTACGAGTTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAGCGAG
64 TTGTACGAGATACTAAT-ACCGGGCTAAGCCCGAAGGCATTTGAGCGAG
30487495 GAGCTATATC
Statistics
Matches: 95, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
117 3 0.03
118 74 0.78
119 18 0.19
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAGCGAGATACTAAT
Found at i:30495394 original size:39 final size:40
Alignment explanation
Indices: 30495293--30495516 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
30495283 TTGAATGATG
* *
30495293 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
30495332 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
30495373 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
30495412 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
30495451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
30495490 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
30495517 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
39 75 0.45
40 78 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:30495480 original size:79 final size:80
Alignment explanation
Indices: 30495293--30495516 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
30495283 TTGAATGATG
* * * *
30495293 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
*
30495356 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
30495373 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
30495435 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
30495451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
30495516 G
66 G
30495517 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 36 0.28
79 56 0.44
80 35 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:30495538 original size:79 final size:79
Alignment explanation
Indices: 30495293--30495549 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
30495283 TTGAATGATG
* * * * *
30495293 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
30495355 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
30495373 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
30495437 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
30495451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
30495515 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
30495531 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
30495550 TACGTGATTT
Statistics
Matches: 153, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 36 0.24
79 68 0.44
80 47 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:30516820 original size:635 final size:633
Alignment explanation
Indices: 30513276--30521434 Score: 12988
Period size: 633 Copynumber: 12.9 Consensus size: 633
30513266 AATACAAGCC
* * * * *
30513276 ATACCTAATGCATCGCAAGAGTGATACTTTTGATACATTCAAAAAGTTTCGTGCGAAAGTGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
* * *
30513341 AACAACTATGTTTATCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTCTCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
* *
30513406 TTCTTAAGGCACCTCA-AGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCAC-CCCCAACC
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA
* *
30513469 GAATGGCATAGCAAAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
196 GAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
* * * * *
30513534 TGAATTTGTCAACCTCTTTTTGGGGATGCGCTGTCCAAATGACTTGTTATATTCTGAATGATGTG
261 TGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTG
* * *
30513599 CCAAATAAGGTAGAATCGAAAACTCTATACAAATTGTGGCACGATAGGAAGTTGAATCTTATACA
326 CCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
*
30513664 TTTTAGGATTTTGGGATGTCTGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATA
391 TTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATA
* * * *
30513729 GGCTGGAGTTCTTCCAATCTAACAGAAGTGTTTTTAACAATGAGTCTGCTGAATAGGAAGATAAT
456 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGAT
* *
30513794 GTCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTTTAGAAAAGAGGTGGTTA
521 GCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGGTTA
**
30513859 CGAGTATTATGTAACCTTTATCAATGACTATTCCAAGGATGGACATGT
586 CGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
* * * *
30513907 ATACTTAATGCATCGCAAGAGTGAAACTTTTGATAAATTGAAAAAGTTTCGTGTGGAAGAGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
* * *
30513972 AACACCTATGTTTACCCATAAAGGCACTACGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
* * * * *
30514037 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAATCATGTCGGGAACACCATAACA
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA
30514102 GAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
196 GAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
* **
30514167 TGAAGTTGTCAACCTCTTTTTGGGGATATGTTGTACAAACGACTTGTTACGTTCTGAATGATGTG
261 TGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTG
*
30514232 CCAAATTAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
326 CCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
* * *
30514297 TATTAGGATTTTGGGATGTCCGACCCACGTATAGGATAAAGATGCAAGAAAGTCGAACTCACATA
391 TTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATA
* * *
30514362 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTCAACACTGAGTCTGTTGAACAAGAAGATGAT
456 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGAT
* * ** * *
30514427 GCCTTGCTCACATATGATGAAGTTAAGTAGA-TAGTTGATTCCCAGCTCTAGAAAAGAGGTGGTT
521 GCCTTACTCACATATGACGAAGCGATGTAGAGT-GTTGATTCCAAGCTCTAGAAAAGAGGTGGTT
*
30514491 CCGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
585 ACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
*
30514540 ACT-CCTGATACATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAG
1 A-TACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAG
*
30514604 AAACAACTACGTTTACCCATAAAGGAACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGA
65 AAACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGA
* * *
30514669 GTTCTTAAGGCAGCTCATAGAGTATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCAGAAC
130 GTTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAAC
* * * *
30514734 AGAATGGTACAGCAGGGAG-AGAAATCGATCATTGTTAGACATGGTATATTCGATATTAATTTAT
195 AGAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTAT
*
30514798 TTGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGTTGT
260 TTGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGT
** *
30514863 GGAAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGGATGGTAGGAAGTTGAATCTTATAC
325 GCCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATAC
* *
30514928 ATTTTAAGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGAATCACAT
390 ATTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACAT
*
30514993 AGGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTAAGTCTGCTGAACAGGAAGATGA
455 AGGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGA
* * * * * * * *
30515058 CGCCTTGCTCAAAAATGACGAAACGATGTAGAGTGTTGATCCCAAGCTCTAGAAAATAGATGGTT
520 TGCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGGTT
* *
30515123 ACGAGTATTATGTAATCTTTATCAATGACTATTCCAAGTATGGACATGT
585 ACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
* * **
30515172 ATACCTGATGCATCGCAAGAGTGAAACTTGTGATAAATTGAAAAAGTTTCAAGTGGAAGTGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
* *
30515237 AAGAACTACGTTTTCCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
* * *
30515302 TTCTTAACGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACCCCAAAACA
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA
*
30515367 GAATGGCATAGCA-AGGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTAT
196 GAATGGCACAGCAGA-GAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTAT
* * *
30515431 TTGAAGTTTTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAGTAATGT
260 TTGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGT
*
30515496 GCCAAATAACGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATAC
325 GCCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATAC
* * *
30515561 ATTTTAGGATTTTGGGAAGTCTGACCCACGTATTGGATAAAGATACAAGAAAGTCGGACTCACAT
390 ATTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACAT
* *
30515626 AGGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAATATGAAGATGA
455 AGGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGA
* * * *
30515691 CGCCTCACTCATATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGTA-ATGGT
520 TGCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAG-AGGTGGT
30515755 TACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
584 TACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
30515805 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
*
30515870 AACAGCTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
* * * *
30515935 TTCTTAAGGCACCTGAAAGAGAATGAGATTCTATCCCAATTAACCATGCCGGGCACTCCACAACA
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA
* *
30516000 GAATGGCACAGCAGAGAGAAGAAATCGATCATTGTTAGACATGGTATATTTGATATTAAGTTATT
196 GAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
* *
30516065 TGAAGTTGTCAACCTCTTTTTGAGGATACATTGTACAAACGACTTGTTATATTCTGAATGATGTG
261 TGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTG
*
30516130 CCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCGTATACA
326 CCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
* *
30516195 TTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTTGGACTCAGATA
391 TTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATA
30516260 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGAT
456 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGAT
* * * *
30516325 TCCTCACTCACATATGATGAAGCGATGCAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGGTTA
521 GCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGGTTA
** * *
30516390 TAAGTGTTATGTAACCTTTATCAATGACTCTTCCAAATATGGACATGT
586 CGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
*
30516438 ATACCTGATGCATTGCAAGAGTGAAACTTTTGATAAAATTTCAAAAAGTTTCGTGTGGAAGTGTA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGAT-AAA-TTCAAAAAGTTTCGTGTGGAAGTGTA
* * * * * *
30516503 GAAACATCTACGTTTTCCCATAAAGGCACTTCTGTCTGGTCTAGGTGGGGGATATTTATCTGATT
64 GAAACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATG
* *
30516568 AGTTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGCCAGGCACTCCACAA
129 AGTTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAA
* * * *
30516633 CAGAATGGCACCGCAGAGATAAGAAAAT-GAACATTATTAGACATGGTATATTCGACATTAAGTT
194 CAGAATGGCACAGCAGAGAGAAG-AAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTT
* ** *
30516697 ATTTGAAGTTGTCAACCACTTTTTACGGATACGTTGTACAAACGACTTGTTATGTTCTGAATGAT
258 ATTTGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGAT
* *
30516762 GTGCCAAAAAAGGCAGAATCAAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTAT
323 GTGCCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTAT
* *
30516827 ACAATTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCAGACTCAC
388 ACATTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCAC
**
30516892 ATAGGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAATTCTGAGTCTGCTGAACAGGAAGAT
453 ATAGGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGAT
* * * *
30516957 GATGCCTTGCTCACATATGGCGAAGTGATGTAGAATGTTGATTCCAAGCTCTAGAAAAGAGGTGG
518 GATGCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGG
*
30517022 TTACGAGTATTATGTAA-CTTT-T--ATCACTATTCCAAATATAGG-CATGT
583 TTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATAT-GGACATGT
* * * * *
30517069 ATACTTAATGCATTGCAAGTGTGAAACTTTTGATAAATTCAAAAAGTTTTGTGTGGAAGTGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
* *
30517134 AACAACTAC-TTTACCCGTAAAGGCACTTTGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
*
30517198 TTCTTAAGGCACCTCATAGAGAATGAGATCCTATCCCAATTAACCGT-TCCGGGCACTCCACAAC
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGT-CGGGCACTCCACAAC
* *
30517262 AGAATGGCACAGCAGAGGGAAGAAATCGAACATTGTTAGACATGGTATCTTCGATATTAAGTTAT
195 AGAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTAT
* * *
30517327 TTGAAGTTGTCAACCTCTTCTTGGGGATACGTTGTACAAAC-ATCTTGTTATATTCTGAATGTTA
260 TTGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGA-CTTGTTATATTCTGAATGATG
*
30517391 TGCAAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATA
324 TGCCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATA
*
30517456 CATTTTAGGATTTTGGGATGTCCGACCCACATATTGGATAAAGATGCAAGAAAGTCGGACTCACA
389 CATTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACA
* * * * ** *
30517521 TAAGCTGTATTTCCTCCAATCTAGCAGACTTGTTTTTAACACTGAGTCTACTGAACAGGAAGATG
454 TAGGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATG
*
30517586 ATACCTTACTCACA-ATTGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGG
519 ATGCCTTACTCACATA-TGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGG
*
30517650 TTATGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
583 TTACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
*
30517701 ATACCTGATGCAT-GCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCATGTGGAAGTGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
* * * *
30517765 AATAACTATGTTTACCCAAAAAGGCACTTCAGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
* *
30517830 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCATAATA
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA
* *
30517895 GAATGGCACAGCAGAGAGAAGAAATCAAACATTGCTAGACATGGTATATTCGATATTAAGTTATT
196 GAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
** * * * * *
30517960 TGAAGTTGTCAAATTCTTTTTTGGGGATACGTTGTAAAAATGACTTGTTATATTTTAAATGTTGT
261 TGAAGTTGTCAACCTC-TTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGT
* * *
30518025 GCCAAATAAGGCAGAATTGAAAACTCTATACAAATTGCGGCATGGTCGGAAGTTGAATCTTATAC
325 GCCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATAC
* * *
30518090 ATTTTAGGATTTTGGGATGTCCAACCCATGTATTGGATAAAGATGCAAGAAAGTCAGACTCACAT
390 ATTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACAT
*
30518155 AGGCTGGAGTTCTTCCAATCTAGCAGAAGT-TCTTTTAACACTAAGTCTGCTGAACAGGAAGATG
455 AGGCTGGAGTTCTTCCAATCTAGCAGAAGTGT-TTTTAACACTGAGTCTGCTGAACAGGAAGATG
30518219 ATGCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGGT
519 ATGCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGGT
30518284 TACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
584 TACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
* * * * *
30518334 ATACTTAATGCATTGCAAGAGTGAAACTTTTGATAAATTGAAAAAGTTTCGTGTGGAAGAGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
* * *
30518399 AACAACTACGTTTATCCATAAAGGCACTACAGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
* * * * * *
30518464 TTCTTAAGGAACCTCATAGAGAATGAGATTCTATCCCAATTAACCATGTCGGGAACACCATAACT
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA
* * *
30518529 GAATGGCATAGAAGACAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
196 GAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
* *
30518594 TGAAGTTGTCAACCTCTTTTTGGGGATATGTTGTACAAACGACTTGTTATGTTCTGAATGATGTG
261 TGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTG
* * *
30518659 CCAAATTAGGCAGAATCGAAATCTCTAGACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
326 CCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
* * **
30518724 TTTTAGAATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGGAAGTAAGACTCACATA
391 TTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATA
*
30518789 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAAGAAGATGAT
456 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGAT
* * ** * *
30518854 GCCTTGCTCATATATGACGAAGTTAAGTAGA-TAGTTGATTCCCAGCTCTAGAAAAGAGGTGGTT
521 GCCTTACTCACATATGACGAAGCGATGTAGAGT-GTTGATTCCAAGCTCTAGAAAAGAGGTGGTT
* *
30518918 ACGAGTAGTATGTAACCTTTATCAATGACTATTCCAAATAGGGACATGT
585 ACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
* *
30518967 ATACCTGATACATCGCAAGAGTGAAACTTTTGATAAATCCAAAAAGTTTCGTGTGGAAGTGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
30519032 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
* *
30519097 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATT-ACACATGTCAGGCACTCCACAAC
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAAC-CGTGTCGGGCACTCCACAAC
* * *
30519161 AGAATGGCACAGAAGAGATAAGAAATCGATCATTGTTAGACATGGTATATTCGATATTAAGTTAT
195 AGAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTAT
* * *
30519226 TTGAAGTTGTCAAACTCTTTTTGGGGATACGTTGTACAAATGACTTATTATATT-TGAATGATGT
260 TTGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGT
**
30519290 GCCAAATAAGGCAGAATCGAAAACTCTATACAAATTGCAGCATGGTAGGAAGTTGAATCTTATAC
325 GCCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATAC
* * *
30519355 ATTTTAGGATTTTGGGATGTCCGACACA-GTATTAGATAAAGATGCAAGAAAGTCAGACTCACAT
390 ATTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACAT
* * * *
30519419 AGGCTGGAGTTCTTCCAATCTAACAAAAGTGTTTTTAACACTGAGTCTGCTGAATATGAAGATGA
455 AGGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGA
* * *
30519484 TGCCTCACTCACATATGACGAAGCGATTTAGAGTGTTGA-TCCAAGCTCTAGAAAATAGGTGGTT
520 TGCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGGTT
*
30519548 ACGAGTATTATGTAACCTTTATCAATGAGTATTCCAAATATGGACATGT
585 ACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
* * *
30519597 ATACCTGATACATCGTAAGTGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
* *
30519662 AACAGCTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGAATATTTATCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
* *
30519727 TTCTTAAGGCACCTCAAAGAGAATGAGATTCTATCCCAATTAATCGTGTCGGGCACTCCACAACA
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA
* *
30519792 GAATGGCACAGCAGAGAGAAGAAATCGATCATTGTTAGACATGGTATATTCGATATTATGTTATT
196 GAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
* * *
30519857 CGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGTTGTA
261 TGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTG
* * *
30519922 CAAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGGATGGTAGGAAGTTGAATCTCATACA
326 CCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
* * * *
30519987 TTCTAGGATTTTGGGATGTCCGACCCACGTATTAGATAAAGATGCGAGAAATTCGGACTCACATA
391 TTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATA
* *
30520052 GGGTAGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGAT
456 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGAT
* * *
30520117 GCCTTACTCAAATATGACGAAGCGATGTAGAGTGTTAATTCCAAGCTCTAGAAAAAAGGTGGTTA
521 GCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGGTTA
* * *
30520182 CGAGTATTATGTAACCCTTATCAATGACTATTCCAAATATAGACGTGT
586 CGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
*
30520230 ATACCTGATGTATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
* *
30520295 AATAACTACGTTTACCCATAAAGGCACTTCGGTCCGGTCGAGGTGGGG-ATATTTATCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
*
30520359 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAAATAACCGTGTCGGGCACTCCACAACA
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA
*
30520424 GAATGGCACAGCAGAGAGAAGAAATCGAACATTGCTAGACATGGTATATTCGATATTAAGTTATT
196 GAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
** * * *
30520489 TGAAGTTGTCAAATTCTTTTTGGGGATACATTGTACAAATGACTTGTTATATTCTGAATGTTGTG
261 TGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTG
*
30520554 CCAAATAAGACAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
326 CCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
* * * *
30520619 TTTTTGGATTTTTGAATGTCTGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATA
391 TTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATA
* * * *
30520684 GGTTGGAGTTCTTCCAATCTAGTAGAAGTGTTTTTAACACTGCGTCTGCTGAATAGGAAGATGAT
456 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGAT
* *
30520749 GCCTTACTCACATATGACGAAGTTG-TGTAGAGTGTTGATTCCAAGCTCTAGAAAAGATGTGGTT
521 GCCTTACTCACATATGACGAAG-CGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGGTT
* *
30520813 ACGAGTATTATGTAACTTTTATCAATGACTATTCCAAATATGGGCATGT
585 ACGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
* * * * *
30520862 ATACTTAATGCATTGCAAGTGTGAAACTTTTGATAAATTCAAAAAGTTTTGTGTGGAAGTGTAGA
1 ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
* *
30520927 AACAACTAC-TTTACCCGTAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTGTCTGATGAG
66 AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
* * *
30520991 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCAAATTAACCGTGTCGGGCACTCTACAATA
131 TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA
* * *
30521056 GAATGGCACAGCAGAGAGAAGAAATTGAACTTTTTTAGACATGGTATATTCGATATTAAGTTATT
196 GAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
* * *
30521121 TGAAGTTGTCAACCTCTTTTTCGGGATACGTTGTACAAACGACTTGTTATATTTTGAATGATGTA
261 TGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTG
* *
30521186 CCAAATAAGGTAGAATCGAAAACTCCATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
326 CCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
*
30521251 TTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTTGGACTCACATA
391 TTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATA
* *
30521316 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTTTACTGAACAGGAAGATGAT
456 GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGAT
* *
30521381 GCCTTACTCACATATGACGAAGCGATGTAGAGTCTTGATTCCAAACTCTAGAAA
521 GCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAA
30521435 GGAGCTATGA
Statistics
Matches: 6925, Mismatches: 561, Indels: 83
0.91 0.07 0.01
Matches are distributed among these distances:
627 6 0.00
628 470 0.07
629 39 0.01
630 368 0.05
631 500 0.07
632 2032 0.29
633 2736 0.40
634 254 0.04
635 516 0.07
636 4 0.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (633 bp):
ATACCTGATGCATCGCAAGAGTGAAACTTTTGATAAATTCAAAAAGTTTCGTGTGGAAGTGTAGA
AACAACTACGTTTACCCATAAAGGCACTTCGGTCTGGTCGAGGTGGGGCATATTTATCTGATGAG
TTCTTAAGGCACCTCATAGAGAATGAGATTCTATCCCAATTAACCGTGTCGGGCACTCCACAACA
GAATGGCACAGCAGAGAGAAGAAATCGAACATTGTTAGACATGGTATATTCGATATTAAGTTATT
TGAAGTTGTCAACCTCTTTTTGGGGATACGTTGTACAAACGACTTGTTATATTCTGAATGATGTG
CCAAATAAGGCAGAATCGAAAACTCTATACAAATTGTGGCATGGTAGGAAGTTGAATCTTATACA
TTTTAGGATTTTGGGATGTCCGACCCACGTATTGGATAAAGATGCAAGAAAGTCGGACTCACATA
GGCTGGAGTTCTTCCAATCTAGCAGAAGTGTTTTTAACACTGAGTCTGCTGAACAGGAAGATGAT
GCCTTACTCACATATGACGAAGCGATGTAGAGTGTTGATTCCAAGCTCTAGAAAAGAGGTGGTTA
CGAGTATTATGTAACCTTTATCAATGACTATTCCAAATATGGACATGT
Found at i:30523688 original size:27 final size:25
Alignment explanation
Indices: 30523621--30523694 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 25
30523611 ATATTTTCTT
* * *
30523621 AAAATTTTACCAAAGGAAAAATCGTC
1 AAAATTTTACC-AGGGTAAAATCATC
30523647 AAAATTTTACCAGGGGTAAAATCATC
1 AAAATTTTACCA-GGGTAAAATCATC
**
30523673 AAAATTTTTATGAGGGTAAAAT
1 AAAA-TTTTACCAGGGTAAAAT
30523695 AGGGATGAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 1 0.02
26 34 0.83
27 6 0.15
ACGTcount: A:0.46, C:0.11, G:0.15, T:0.28
Consensus pattern (25 bp):
AAAATTTTACCAGGGTAAAATCATC
Found at i:30523694 original size:26 final size:26
Alignment explanation
Indices: 30523621--30523680 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
30523611 ATATTTTCTT
** * *
30523621 AAAATTTTACCAAAGGAAAAATCGTC
1 AAAATTTTACCAGGGGTAAAATCATC
30523647 AAAATTTTACCAGGGGTAAAATCATC
1 AAAATTTTACCAGGGGTAAAATCATC
30523673 AAAATTTT
1 AAAATTTT
30523681 TATGAGGGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (26 bp):
AAAATTTTACCAGGGGTAAAATCATC
Found at i:30535729 original size:27 final size:27
Alignment explanation
Indices: 30535699--30535852 Score: 193
Period size: 27 Copynumber: 5.7 Consensus size: 27
30535689 AAAATAGGTA
*
30535699 AAAATTATCGAAATACCCCCGATTTGT
1 AAAATTATCGAAATACCCCCAATTTGT
*
30535726 AAAATTACCGAAATACCCCCAATTTGT
1 AAAATTATCGAAATACCCCCAATTTGT
* *
30535753 AAAATTATCGAAATACCCTCAGTTTGT
1 AAAATTATCGAAATACCCCCAATTTGT
* *
30535780 AAAATTA-CTGAAATAGCCTCAATTTGT
1 AAAATTATC-GAAATACCCCCAATTTGT
* * * **
30535807 AAAATTACCAAAATACCTCTGATTTGT
1 AAAATTATCGAAATACCCCCAATTTGT
30535834 AAAATTATCGAAATACCCC
1 AAAATTATCGAAATACCCC
30535853 TGTAGGTGAA
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 107 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTATCGAAATACCCCCAATTTGT
Found at i:30535779 original size:54 final size:55
Alignment explanation
Indices: 30535699--30535852 Score: 215
Period size: 54 Copynumber: 2.9 Consensus size: 55
30535689 AAAATAGGTA
*
30535699 AAAATTATCGAAATACCC-CCGATTTGTAAAATTACCGAAATACCCCCAATTTGT
1 AAAATTATCGAAATACCCTCAGATTTGTAAAATTACCGAAATACCCCCAATTTGT
* * *
30535753 AAAATTATCGAAATACCCTCAG-TTTGTAAAATTACTGAAATAGCCTCAATTTGT
1 AAAATTATCGAAATACCCTCAGATTTGTAAAATTACCGAAATACCCCCAATTTGT
* * * *
30535807 AAAATTACCAAAATA-CCTCTGATTTGTAAAATTATCGAAATACCCC
1 AAAATTATCGAAATACCCTCAGATTTGTAAAATTACCGAAATACCCC
30535853 TGTAGGTGAA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 5 0.06
54 80 0.92
55 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (55 bp):
AAAATTATCGAAATACCCTCAGATTTGTAAAATTACCGAAATACCCCCAATTTGT
Found at i:30535865 original size:81 final size:81
Alignment explanation
Indices: 30535693--30535865 Score: 215
Period size: 81 Copynumber: 2.1 Consensus size: 81
30535683 AACCCTAAAA
* *
30535693 TAGGTAAAAATTATCGAAATACCCCCGATTTGTAAAATTACCGAAATACCCCCAATTTGTAAAAT
1 TAGGT-AAAATTATCGAAATACCCCCAATTTGTAAAATTACCAAAATACCCCCAATTTGTAAAAT
30535758 TATCGAAATACCCTCAG
65 TATCGAAATACCCTCAG
** * * * **
30535775 TTTGTAAAATTA-CTGAAATAGCCTCAATTTGTAAAATTACCAAAATACCTCTGATTTGTAAAAT
1 TAGGTAAAATTATC-GAAATACCCCCAATTTGTAAAATTACCAAAATACCCCCAATTTGTAAAAT
*
30535839 TATCGAAATACCC-CTG
65 TATCGAAATACCCTCAG
30535855 TAGGTGAAAAT
1 TAGGT-AAAAT
30535866 GGTTGTTTTG
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
80 6 0.08
81 68 0.88
82 3 0.04
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (81 bp):
TAGGTAAAATTATCGAAATACCCCCAATTTGTAAAATTACCAAAATACCCCCAATTTGTAAAATT
ATCGAAATACCCTCAG
Found at i:30538758 original size:11 final size:11
Alignment explanation
Indices: 30538742--30538784 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
30538732 CTTAAAATAC
30538742 ATAAAATATTA
1 ATAAAATATTA
*
30538753 ATAAAACATCTTA
1 AT-AAA-ATATTA
30538766 ATAAAATATTA
1 ATAAAATATTA
*
30538777 TTAAAATA
1 ATAAAATA
30538785 ATTTTACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 14 0.52
12 6 0.22
13 7 0.26
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
ATAAAATATTA
Found at i:30540119 original size:15 final size:15
Alignment explanation
Indices: 30540097--30540135 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
30540087 GAGTATTTGA
30540097 TCGAGTCAAGTCGAAT
1 TCGAGTCAAGTCG-AT
*
30540113 T-GAGTCAAGTTGAT
1 TCGAGTCAAGTCGAT
30540127 TCGAGTCAA
1 TCGAGTCAA
30540136 AATAATTCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 17 0.81
16 1 0.05
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (15 bp):
TCGAGTCAAGTCGAT
Found at i:30540766 original size:83 final size:83
Alignment explanation
Indices: 30540660--30540836 Score: 311
Period size: 83 Copynumber: 2.1 Consensus size: 83
30540650 GAATACTATG
30540660 ATGATGCATGAACTCTACTGAATGTGAATGCTAAACATGCATAAGATTAATTGTGGTATATGGGT
1 ATGATGCATGAACTCTACTGAATGTGAATGCTAAACATGCATAAGATTAATTGTGGTATATGGGT
*
30540725 ATCCACCAATGTAGTTAA
66 ATCCACCAAAGTAGTTAA
**
30540743 ATGATGCATGAACTCTGTTGAATGTGAATGCTAAACATGCATAAGATTAATTGTGGTATATGGGT
1 ATGATGCATGAACTCTACTGAATGTGAATGCTAAACATGCATAAGATTAATTGTGGTATATGGGT
30540808 ATCCACCAAAGTAGTTAA
66 ATCCACCAAAGTAGTTAA
*
30540826 AT-ATGTATGAA
1 ATGATGCATGAA
30540837 ATAATTATGG
Statistics
Matches: 90, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
82 8 0.09
83 82 0.91
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (83 bp):
ATGATGCATGAACTCTACTGAATGTGAATGCTAAACATGCATAAGATTAATTGTGGTATATGGGT
ATCCACCAAAGTAGTTAA
Found at i:30549689 original size:40 final size:40
Alignment explanation
Indices: 30549630--30549774 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
30549620 CATTTGAATG
* *
30549630 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGA-T
* *
30549670 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* * *
30549710 ATATCCTGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* * *
30549750 ATACCCGGGTTAAGACTCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
30549775 ATTGTGCTTG
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 90 0.97
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
Found at i:30549793 original size:80 final size:79
Alignment explanation
Indices: 30549630--30549801 Score: 193
Period size: 80 Copynumber: 2.2 Consensus size: 79
30549620 CATTTGAATG
* * * * *
30549630 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCC-GGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
30549695 TTTGTGCGAGTTGAT
65 ATTGTGCGAGTGGAT
* * *
30549710 ATATCCTGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACTCGAAGGC
1 ATATCC-GGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
30549774 AATTGTGCTTGTGGTT
64 AATTGTGCGAGTGGAT
30549790 ATATCCGGCTAA
1 ATATCCGGCTAA
30549802 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 6 0.08
80 69 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (79 bp):
ATATCCGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCAA
TTGTGCGAGTGGAT
Found at i:30561173 original size:48 final size:47
Alignment explanation
Indices: 30561021--30561230 Score: 212
Period size: 46 Copynumber: 4.5 Consensus size: 47
30561011 GTATGCTAGC
* * *
30561021 GTAAGACATGTCTGGGACATGCATCAGCCAC-AAAATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCGCAAATGAGAGCCAGT
* * * * *
30561067 GTAAGACATGTCTGGTACATGCATCGGCATTG-AAACGAGAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCGCAAATGAGAGCCAGT
*
30561113 GTAAGACATGTCTGGGACATGCATCGGCCTCGCAATATTTA-AGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCGCAA-A-TGAGAGCCAGT
* * * * * ** * *
30561161 GTAAGACATGTCTAGGACATTCATCGGCATTG-AGACAAGAGCTACT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCGCAAATGAGAGCCAGT
30561207 GTAAGACATGTCTGGGACATGCAT
1 GTAAGACATGTCTGGGACATGCAT
30561231 TTACCTCGCG
Statistics
Matches: 135, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
45 1 0.01
46 95 0.70
47 3 0.02
48 35 0.26
49 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (47 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCGCAAATGAGAGCCAGT
Found at i:30561191 original size:94 final size:92
Alignment explanation
Indices: 30561015--30561230 Score: 301
Period size: 94 Copynumber: 2.3 Consensus size: 92
30561005 TGATATGTAT
*
30561015 GCTAGCGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGTGTAAGACATGTCT
*
30561080 GGTACATGCATCGGCATTGAAACGAGA
66 GGTACATGCATCGGCATTGAAACAAGA
* * * *
30561107 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCAATATTTA-AGCCAGTGTAAGACATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-C-CACAA-AATGAGAGCCAGTGTAAGACATG
* *
30561171 TCTAGG-ACATTCATCGGCATTGAGACAAGA
63 TCT-GGTACATGCATCGGCATTGAAACAAGA
*
30561201 GCTACTGTAAGACATGTCTGGGACATGCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCAT
30561231 TTACCTCGCG
Statistics
Matches: 111, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
92 31 0.28
93 1 0.01
94 74 0.67
95 5 0.05
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGTGTAAGACATGTCT
GGTACATGCATCGGCATTGAAACAAGA
Found at i:30565923 original size:18 final size:18
Alignment explanation
Indices: 30565900--30565935 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
30565890 GAGATGGTTA
*
30565900 GAGTTGATAATAGGCTAT
1 GAGTTGATAATAGACTAT
30565918 GAGTTGATAATAGACTAT
1 GAGTTGATAATAGACTAT
30565936 CACCCAGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.33
Consensus pattern (18 bp):
GAGTTGATAATAGACTAT
Found at i:30568817 original size:46 final size:48
Alignment explanation
Indices: 30568750--30568958 Score: 189
Period size: 48 Copynumber: 4.4 Consensus size: 48
30568740 GTGTGCTAGC
* * *
30568750 GTAAGACATGTTTGGGACATGCATCAGCGACA-GA-ATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCACATGATATGAGAGCCAGT
* ** *
30568796 GTAAGACATGTCTGGGACATGCATCGGCCTCACAATATTTA-AGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCACATGATA-TGAGAGCCAGT
* * * *
30568844 GTAAGACATGTTTGGGACATGCATC-G--ACATTGAGACGAGAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCACA-TGATATGAGAGCCAGT
* * * * *
30568890 GTAAGACATGTCTAGGATATGCATCGGCCTCATGATAT-ACAAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCACATGATATGA-GAGCCAGT
*
30568938 GTAAGACCTGTCTGGGACATG
1 GTAAGACATGTCTGGGACATG
30568959 GCGTCAACTT
Statistics
Matches: 130, Mismatches: 24, Indels: 16
0.76 0.14 0.09
Matches are distributed among these distances:
45 3 0.02
46 58 0.45
47 4 0.03
48 61 0.47
49 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
GTAAGACATGTCTGGGACATGCATCGGCCACATGATATGAGAGCCAGT
Found at i:30568852 original size:48 final size:46
Alignment explanation
Indices: 30568750--30568958 Score: 161
Period size: 46 Copynumber: 4.5 Consensus size: 46
30568740 GTGTGCTAGC
* * ** * *
30568750 GTAAGACATGTTTGGGACATGCATCAGCGACAGAATGA-GAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCACAAT-ATAAGCCAGT
30568796 GTAAGACATGTCTGGGACATGCATCGGCCTCACAATATTTAAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCACAATA--TAAGCCAGT
* * * * * ** * *
30568844 GTAAGACATGTTTGGGACATGCATCGACATTGAGACGA-GAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGC-CTCACAATATAAGCCAGT
* * * * *
30568890 GTAAGACATGTCTAGGATATGCATCGGCCTCATGATATACAAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCA-CA-ATATAAGCCAGT
*
30568938 GTAAGACCTGTCTGGGACATG
1 GTAAGACATGTCTGGGACATG
30568959 GCGTCAACTT
Statistics
Matches: 129, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
45 3 0.02
46 63 0.49
47 1 0.01
48 58 0.45
49 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCACAATATAAGCCAGT
Found at i:30568912 original size:94 final size:92
Alignment explanation
Indices: 30568750--30568958 Score: 267
Period size: 94 Copynumber: 2.2 Consensus size: 92
30568740 GTGTGCTAGC
* *
30568750 GTAAGACATGTTTGGGACATGCATCAGCGACAGAATGAGAGCCAGTGTAAGACATGTCTGGGACA
1 GTAAGACATGTTTGGGACATGCAT-A-CGACAGAACGAGAGCCAGTGTAAGACATGTCTAGGACA
**
30568815 TGCATCGGCCTCACAATATTTAAGCCAGT
64 TGCATCGGCCTCACAATATACAAGCCAGT
* *
30568844 GTAAGACATGTTTGGGACATGCAT-CGACATTGAGACGAGAGCTAGTGTAAGACATGTCTAGGAT
1 GTAAGACATGTTTGGGACATGCATACGACA--GA-ACGAGAGCCAGTGTAAGACATGTCTAGGAC
** *
30568908 ATGCATCGGCCTCATGATATACAAGCTAGT
63 ATGCATCGGCCTCACAATATACAAGCCAGT
* *
30568938 GTAAGACCTGTCTGGGACATG
1 GTAAGACATGTTTGGGACATG
30568959 GCGTCAACTT
Statistics
Matches: 101, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
91 5 0.05
93 2 0.02
94 94 0.93
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (92 bp):
GTAAGACATGTTTGGGACATGCATACGACAGAACGAGAGCCAGTGTAAGACATGTCTAGGACATG
CATCGGCCTCACAATATACAAGCCAGT
Found at i:30572555 original size:39 final size:40
Alignment explanation
Indices: 30572510--30572681 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
30572500 GCTCCTCGTT
* * *
30572510 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
30572550 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
30572589 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
30572629 CAAAGGCCTTCGGGGCTTAACCCGAAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCG-GATTTAGTAACTCGCA
30572669 CAAATGCCTTCGG
1 CAAATGCCTTCGG
30572682 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.30
40 79 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:30572610 original size:40 final size:39
Alignment explanation
Indices: 30572512--30572734 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
30572502 TCCTCGTTCA
* * * *
30572512 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
30572551 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
30572590 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * * *
30572630 AAAGGCCTTCGGGGCTTAACCCGAAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCG-GATTTAGTAACTCGCAC
** * * * *
30572670 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
30572711 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
30572735 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 40 0.26
40 103 0.66
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:30572743 original size:41 final size:41
Alignment explanation
Indices: 30572666--30572743 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
30572656 TTTGTATCTC
* * *
30572666 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
30572707 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
30572744 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:30580388 original size:39 final size:40
Alignment explanation
Indices: 30580343--30580514 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
30580333 GCTCCTCGTT
* * *
30580343 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
30580383 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
30580422 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
30580462 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
*
30580502 CAAATGCGTTCGG
1 CAAATGCCTTCGG
30580515 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.30
40 79 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:30580443 original size:40 final size:39
Alignment explanation
Indices: 30580345--30580567 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
30580335 TCCTCGTTCA
* * * *
30580345 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
30580384 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
30580423 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
30580463 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
* ** * * * *
30580503 AAATGCGTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
30580544 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
30580568 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 40 0.26
40 103 0.66
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:30595589 original size:12 final size:12
Alignment explanation
Indices: 30595572--30595601 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
30595562 AGAATTGGGC
30595572 ACACGGGCAGAG
1 ACACGGGCAGAG
*
30595584 ACACGGGTAGAG
1 ACACGGGCAGAG
30595596 ACACGG
1 ACACGG
30595602 CCGTGTGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.40, T:0.03
Consensus pattern (12 bp):
ACACGGGCAGAG
Found at i:30595788 original size:21 final size:22
Alignment explanation
Indices: 30595764--30595818 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
30595754 ATGGTCTTCA
**
30595764 ACACGGGCATGT-CCTAGGGTC
1 ACACGGGCATGTCCCTAGGACC
* *
30595785 ACACGGGCGTGTCCCTTGGACC
1 ACACGGGCATGTCCCTAGGACC
30595807 ACACGGGCATGT
1 ACACGGGCATGT
30595819 AAGCCTTGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 11 0.39
22 17 0.61
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (22 bp):
ACACGGGCATGTCCCTAGGACC
Found at i:30597538 original size:48 final size:48
Alignment explanation
Indices: 30597468--30597798 Score: 298
Period size: 48 Copynumber: 6.9 Consensus size: 48
30597458 AGGGTGAATT
* * * *
30597468 GCCGATGCCAT-TTCCAAACATGGTCTTACACTGGCTCACATGTTAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAG
* * * * *
30597515 GCCGATGCTATGTCCCAAACATGGTCTTACACTAG--CACTTGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT-T-AAG
* * * * * *
30597563 GCCGATGCCATGTCTCAGACATGGTCTTACA-TTGACTCTCTTAATATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCACATATTAAG
* * * *
30597611 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAG
*
30597659 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--ATTACATTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTA-A--G
* * * * * **
30597708 G-CGATGCCATGTTCCAAACATGGTCTCACACTTGCTCTCATATTGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAG
* *
30597755 GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT
30597799 CATCTAAATG
Statistics
Matches: 230, Mismatches: 41, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
46 9 0.04
47 16 0.07
48 194 0.84
49 4 0.02
50 7 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAG
Found at i:30597633 original size:96 final size:94
Alignment explanation
Indices: 30597467--30597787 Score: 333
Period size: 96 Copynumber: 3.4 Consensus size: 94
30597457 AAGGGTGAAT
* * * * * ** * *
30597467 TGCCGATGCCATTTCCAAACATGGTCTTACACTGGCTCACATGTTAAGGCCGATGCTATGTCCCA
1 TGCCGATGCCATGTCCAGACATGGTCTTACACTGACTCTCTTAATATGG-CGATGCCATGTCCCA
*** *
30597532 AACATGGTCTTACACTAGCACTTGTCTCAA
65 AACATGGTCTTACACTAGCACACATATCAA
*
30597562 TGCCGATGCCATGTCTCAGACATGGTCTTACATTGACTCTCTTAATATGGTCGATGCCATGTCCC
1 TGCCGATGCCATGTC-CAGACATGGTCTTACACTGACTCTCTTAATATGG-CGATGCCATGTCCC
* *
30597627 AGACATGGTCTTACACTAGCGCACATATCAA
64 AAACATGGTCTTACACTAGCACACATATCAA
*
30597658 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCATTACAT-TGGCGATGCCATGTT
1 TGCCGATGCCATGT-CCAGACATGGTCTTACACTGA-CTCTC-TTA-ATATGGCGATGCCATGTC
* * * * **
30597721 CCAAACATGGTCTCACACTTGCTCTCATAT-TG
62 CCAAACATGGTCTTACACTAGCACACATATCAA
30597753 TGGCCGATGCCATGTACCAGACATGGTCTTACACT
1 T-GCCGATGCCATGT-CCAGACATGGTCTTACACT
30597788 AGCACACATA
Statistics
Matches: 193, Mismatches: 27, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
95 16 0.08
96 168 0.87
97 7 0.04
98 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
TGCCGATGCCATGTCCAGACATGGTCTTACACTGACTCTCTTAATATGGCGATGCCATGTCCCAA
ACATGGTCTTACACTAGCACACATATCAA
Found at i:30597746 original size:144 final size:144
Alignment explanation
Indices: 30597468--30597800 Score: 413
Period size: 144 Copynumber: 2.3 Consensus size: 144
30597458 AGGGTGAATT
* * * * * * *
30597468 GCCGATGCCAT-TTCCAAACATGGTCTTACACTGGCTCACATGTTAAGGCCGATGCTATGTCCCA
1 GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCA
** * *
30597532 AACATGGTCTTACACTAGCACTTGTCTCAATGCCGATGCCATGTCTCAGACATGGTCTTACATTG
66 AACATGGTCTTACACTAGCACTCATCTCAATGCCGATGCCATGTCTCAAACATGGTCTCACATTG
*
30597597 ACTCTCTTAATATG
131 ACTCTCATAATATG
* * * *
30597611 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCA
1 GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCA
* * * *
30597676 GACATGGTCTTACACTAGCTCTCAT-TACATTGGCGATGCCATGT-TCCAAACATGGTCTCACAC
66 AACATGGTCTTACACTAGCACTCATCT-CAATGCCGATGCCATGTCT-CAAACATGGTCTCACA-
* *
30597739 TTG-CTCTCATATTGTG
128 TTGACTCTCATAATATG
30597755 GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATATCA
1 GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATATCA
30597801 TCTAAATGTC
Statistics
Matches: 163, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
143 12 0.07
144 148 0.91
145 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (144 bp):
GCCGATGCCATGTACCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCACTCATCTCAATGCCGATGCCATGTCTCAAACATGGTCTCACATTG
ACTCTCATAATATG
Found at i:30599220 original size:15 final size:15
Alignment explanation
Indices: 30599196--30599226 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
30599186 GGTTAAAAAA
*
30599196 AACATGTTATAATAT
1 AACATATTATAATAT
30599211 AACATATTATAATAT
1 AACATATTATAATAT
30599226 A
1 A
30599227 GTTAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (15 bp):
AACATATTATAATAT
Found at i:30601586 original size:18 final size:19
Alignment explanation
Indices: 30601551--30601594 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
30601541 TGCATGGCAA
* *
30601551 TATAAATTCATTAGATATT
1 TATAAATTCATTAAATATG
30601570 TATAAATT-ATTAAATATG
1 TATAAATTCATTAAATATG
30601588 TATAAAT
1 TATAAAT
30601595 AAGTTTAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (19 bp):
TATAAATTCATTAAATATG
Found at i:30604348 original size:19 final size:20
Alignment explanation
Indices: 30604324--30604361 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
30604314 GGTACCACCA
30604324 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
30604343 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
30604362 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:30604749 original size:46 final size:46
Alignment explanation
Indices: 30604586--30604755 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 46
30604576 AACCCGCCCC
* * * * * *
30604586 TAAGTGAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
* * * *
30604632 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC-ATTTGCATCCA
* * * *
30604680 TCA-CGAACTCAGACTTAACTCAACGAGTTCAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
30604725 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
30604756 GGATGCTCCA
Statistics
Matches: 97, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 52 0.54
47 24 0.25
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
Found at i:30618594 original size:46 final size:44
Alignment explanation
Indices: 30618535--30618649 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 44
30618525 ACAGGACATA
* * *
30618535 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAT
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
30618581 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
30618625 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
30618650 GTCAAAGACA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
44 34 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:30618630 original size:44 final size:45
Alignment explanation
Indices: 30618535--30618668 Score: 144
Period size: 46 Copynumber: 3.0 Consensus size: 45
30618525 ACAGGACATA
* * *
30618535 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAT
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
30618581 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
30618625 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
30618669 CAGGATATTG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
44 35 0.48
45 1 0.01
46 37 0.51
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:30620882 original size:48 final size:48
Alignment explanation
Indices: 30620824--30621091 Score: 245
Period size: 48 Copynumber: 5.6 Consensus size: 48
30620814 GGGTGACTTA
* * * * *
30620824 CCGATTCCATGTTCCAAACATGGTCTTACACTGGTTCACATGTCGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
* *
30620872 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCTTAAT-GTGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAGG
* * * * * * * * **
30620920 TCAATGCCATGGCCCAGACATGGTCTTACACTAGCGCACATATCAATA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
* * *
30620968 CCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCAT-TAC-ATTG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGA-GG
* * * * **
30621016 CCGATGTCATGTTCCAAACATGATCTTACTCTGGCTCTCATATCTTGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
*
30621064 CCGATTCCATGTCCCAAACATGGTCTTA
1 CCGATGCCATGTCCCAAACATGGTCTTA
30621092 ACTAACACAC
Statistics
Matches: 176, Mismatches: 38, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
47 4 0.02
48 170 0.97
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
Found at i:30621085 original size:144 final size:143
Alignment explanation
Indices: 30620822--30621107 Score: 335
Period size: 144 Copynumber: 2.0 Consensus size: 143
30620812 GAGGGTGACT
* ** *
30620822 TACCGATTCCATGTTCCAAACATGGTCTTACACTGGTTCACATGTCGAGGCCGATGCCATGTCCC
1 TACCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
* * * *
30620887 AAACATGGTCTTACACTGGCTCTCTTAATGTGGTCAATGCCATGGCCCAGACATGGTCTTACACT
66 AAACATGATCTTACACTGGCTCTCATAATGTGGCCAATGCCATGGCCCAAACATGGTCTTA-ACT
* *
30620952 AGCGCACATATCAA
130 AACACACATATCAA
* * * * *
30620966 TACCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCAT-TAC-ATTGCCGATGTCATGTT
1 TACCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCACATGT-CGA-GGCCGATGCCATGTC
* * * * *
30621029 CCAAACATGATCTTACTCTGGCTCTCAT-ATCTTGGCCGATTCCATGTCCCAAACATGGTCTTAA
64 CCAAACATGATCTTACACTGGCTCTCATAAT-GTGGCCAATGCCATGGCCCAAACATGGTCTTAA
30621093 CTAACACACATATCA
128 CTAACACACATATCA
30621108 CCCAAATGTC
Statistics
Matches: 119, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
143 18 0.15
144 101 0.85
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (143 bp):
TACCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
AAACATGATCTTACACTGGCTCTCATAATGTGGCCAATGCCATGGCCCAAACATGGTCTTAACTA
ACACACATATCAA
Found at i:30622219 original size:3 final size:3
Alignment explanation
Indices: 30622207--30622236 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
30622197 GCTATAACAC
30622207 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
30622237 GATAATTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:30625725 original size:16 final size:13
Alignment explanation
Indices: 30625691--30625718 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
30625681 CTTTATTTTA
30625691 TTATTTATCATCT
1 TTATTTATCATCT
30625704 TTATTTATCATCT
1 TTATTTATCATCT
30625717 TT
1 TT
30625719 TCAATTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTTATCATCT
Found at i:30627615 original size:21 final size:21
Alignment explanation
Indices: 30627589--30627640 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
30627579 TATACGATTA
30627589 AATTTAACATCAATTTAATAC
1 AATTTAACATCAATTTAATAC
* *
30627610 AATTTATAC-TCAATTTAGTCC
1 AATTTA-ACATCAATTTAATAC
30627631 AA-TTAACATC
1 AATTTAACATC
30627641 TTAGGCAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 2 0.07
20 5 0.19
21 18 0.67
22 2 0.07
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.38
Consensus pattern (21 bp):
AATTTAACATCAATTTAATAC
Found at i:30634572 original size:24 final size:24
Alignment explanation
Indices: 30634444--30634581 Score: 83
Period size: 23 Copynumber: 5.9 Consensus size: 24
30634434 ATAACTTTTA
* *
30634444 ATCAGGAAACTCACAAAGAGCC-T
1 ATCAGGAAGCTCACTAAGAGCCAT
*
30634467 ATCAGGAAGCTCACAAAGAGCCATGT
1 ATCAGGAAGCTCACTAAGAGCCA--T
* ** *
30634493 AACAGG-AGCTC-CGGATAG-CAT
1 ATCAGGAAGCTCACTAAGAGCCAT
* * *
30634514 AACAGGAAGTTCA--AGTGAGCCAT
1 ATCAGGAAGCTCACTA-AGAGCCAT
*
30634537 GTCAGGAAGCTCA-TAAGAGCCTAT
1 ATCAGGAAGCTCACTAAGAGCC-AT
*
30634561 ATCAGGATGCTCACTAAGAGC
1 ATCAGGAAGCTCACTAAGAGC
30634582 TACGTTTGTG
Statistics
Matches: 90, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
21 7 0.08
22 6 0.07
23 41 0.46
24 18 0.20
25 12 0.13
26 6 0.07
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (24 bp):
ATCAGGAAGCTCACTAAGAGCCAT
Found at i:30635115 original size:45 final size:45
Alignment explanation
Indices: 30635051--30635138 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
30635041 TGGTCTATCC
*
30635051 AGATCTATACGTGTAAATTTAACATCAATTTAATACAATTCATCT
1 AGATCTATACATGTAAATTTAACATCAATTTAATACAATTCATCT
30635096 AGATCTATACATGTAAATTTAACATCAATTTAATACAATTCAT
1 AGATCTATACATGTAAATTTAACATCAATTTAATACAATTCAT
30635139 ACTCAATTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.38
Consensus pattern (45 bp):
AGATCTATACATGTAAATTTAACATCAATTTAATACAATTCATCT
Found at i:30635703 original size:28 final size:30
Alignment explanation
Indices: 30635672--30635728 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
30635662 TTTTATCATT
30635672 TATCAT-CTTTT-ATTATTTCACTTTCCAA
1 TATCATCCTTTTCATTATTTCACTTTCCAA
* *
30635700 TATCATCCTTTTCATTATTTTATTTTCCA
1 TATCATCCTTTTCATTATTTCACTTTCCA
30635729 TGGATGAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.24
29 5 0.20
30 14 0.56
ACGTcount: A:0.23, C:0.21, G:0.00, T:0.56
Consensus pattern (30 bp):
TATCATCCTTTTCATTATTTCACTTTCCAA
Found at i:30641668 original size:21 final size:20
Alignment explanation
Indices: 30641635--30641673 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
30641625 ATTTTCACGA
30641635 TTTTAAATATAAAATATTTG
1 TTTTAAATATAAAATATTTG
*
30641655 TTTTATATCATAAAATATT
1 TTTTAAAT-ATAAAATATT
30641674 AAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (20 bp):
TTTTAAATATAAAATATTTG
Found at i:30645654 original size:26 final size:26
Alignment explanation
Indices: 30645625--30645678 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
30645615 TACTGATATT
30645625 ATCAAACATTATAAAAGGAAAAAATA
1 ATCAAACATTATAAAAGGAAAAAATA
30645651 ATCAAACATTATAAAAGGAAAAAATA
1 ATCAAACATTATAAAAGGAAAAAATA
30645677 AT
1 AT
30645679 GTAAAAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.20
Consensus pattern (26 bp):
ATCAAACATTATAAAAGGAAAAAATA
Found at i:30645683 original size:18 final size:16
Alignment explanation
Indices: 30645662--30645700 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
30645652 TCAAACATTA
30645662 TAAAAGGAAAAAATAATG
1 TAAAAGGAAAAAA-AA-G
30645680 TAAAA-GAAAAAAAAG
1 TAAAAGGAAAAAAAAG
30645695 TAAAAG
1 TAAAAG
30645701 TAATGACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 6 0.30
16 2 0.10
17 7 0.35
18 5 0.25
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (16 bp):
TAAAAGGAAAAAAAAG
Found at i:30645692 original size:26 final size:26
Alignment explanation
Indices: 30645637--30645692 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
30645627 CAAACATTAT
** *
30645637 AAAAGGAAAAAATAATCAAACATTAT
1 AAAAGGAAAAAATAATCAAACAGAAA
*
30645663 AAAAGGAAAAAATAATGTAAA-AGAAA
1 AAAAGGAAAAAATAAT-CAAACAGAAA
30645689 AAAA
1 AAAA
30645693 AGTAAAAGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.71, C:0.04, G:0.11, T:0.14
Consensus pattern (26 bp):
AAAAGGAAAAAATAATCAAACAGAAA
Found at i:30647278 original size:7 final size:7
Alignment explanation
Indices: 30647266--30647298 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
30647256 GTTAAATTCA
30647266 CCATTAT
1 CCATTAT
30647273 CCATTAT
1 CCATTAT
30647280 CCATTAT
1 CCATTAT
30647287 CCATTAT
1 CCATTAT
30647294 CCATT
1 CCATT
30647299 TCCTCTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.42
Consensus pattern (7 bp):
CCATTAT
Found at i:30648481 original size:11 final size:11
Alignment explanation
Indices: 30648465--30648489 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
30648455 ATGTGTATAT
30648465 TATATAGAATA
1 TATATAGAATA
30648476 TATATAGAATA
1 TATATAGAATA
30648487 TAT
1 TAT
30648490 GAGCTTCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (11 bp):
TATATAGAATA
Found at i:30652565 original size:24 final size:23
Alignment explanation
Indices: 30652524--30652570 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
30652514 TCCTTTGCTT
30652524 GTTTATTTCCTGTATTTAGTTTTA
1 GTTTATTTCCTGTATTTA-TTTTA
** *
30652548 GTTTATTTTTTGTTTTTATTTTA
1 GTTTATTTCCTGTATTTATTTTA
30652571 TTTTGGGTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.15, C:0.04, G:0.11, T:0.70
Consensus pattern (23 bp):
GTTTATTTCCTGTATTTATTTTA
Found at i:30653799 original size:13 final size:12
Alignment explanation
Indices: 30653758--30653812 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 12
30653748 GTTTTATTGA
*
30653758 TTTATTTCATTTG
1 TTTATTTC-TTTC
30653771 TTTAGCTTTCTTTC
1 TTTA--TTTCTTTC
30653785 TTTATTTCTTTTC
1 TTTATTTC-TTTC
*
30653798 TTTATTTATTTC
1 TTTATTTCTTTC
30653810 TTT
1 TTT
30653813 TTATTCCCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
12 11 0.30
13 15 0.41
14 7 0.19
15 4 0.11
ACGTcount: A:0.11, C:0.13, G:0.04, T:0.73
Consensus pattern (12 bp):
TTTATTTCTTTC
Found at i:30653799 original size:17 final size:17
Alignment explanation
Indices: 30653777--30653813 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
30653767 TTTGTTTAGC
*
30653777 TTTCTTTCTTTATTTCT
1 TTTCTTTATTTATTTCT
30653794 TTTCTTTATTTATTTCT
1 TTTCTTTATTTATTTCT
30653811 TTT
1 TTT
30653814 TATTCCCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTCTTTATTTATTTCT
Found at i:30658253 original size:41 final size:41
Alignment explanation
Indices: 30658196--30658279 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
30658186 AATTAGAAAT
30658196 TAGCCTAACAACTTTGCTGTTAAAACTGTCCGCCCTATGGC
1 TAGCCTAACAACTTTGCTGTTAAAACTGTCCGCCCTATGGC
30658237 TAGCCTAACAACTTTGCTGTTAAAACTGTCCGCCCTATGGC
1 TAGCCTAACAACTTTGCTGTTAAAACTGTCCGCCCTATGGC
30658278 TA
1 TA
30658280 TTAATAGCCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.30
Consensus pattern (41 bp):
TAGCCTAACAACTTTGCTGTTAAAACTGTCCGCCCTATGGC
Found at i:30659253 original size:20 final size:20
Alignment explanation
Indices: 30659228--30659268 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
30659218 TAAGCATGAT
30659228 AAAGTAAATTGAATTGATTA
1 AAAGTAAATTGAATTGATTA
*
30659248 AAAGTAGATTGAATTGATTA
1 AAAGTAAATTGAATTGATTA
30659268 A
1 A
30659269 TATACTTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (20 bp):
AAAGTAAATTGAATTGATTA
Found at i:30660407 original size:10 final size:10
Alignment explanation
Indices: 30660392--30660419 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
30660382 GATTGACCAC
30660392 ATGCTTGATA
1 ATGCTTGATA
30660402 ATGCTTGATA
1 ATGCTTGATA
30660412 ATGCTTGA
1 ATGCTTGA
30660420 AAGATGCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (10 bp):
ATGCTTGATA
Found at i:30671776 original size:30 final size:30
Alignment explanation
Indices: 30671740--30671799 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
30671730 ACTTAACAAC
30671740 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
* *
30671770 CAAATGTCTTTAAAATAATAACGAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
30671800 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.28
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:30671857 original size:22 final size:22
Alignment explanation
Indices: 30671832--30671874 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
30671822 TATCCAAACA
30671832 ATAATAACAAAATAGTAGCAAC
1 ATAATAACAAAATAGTAGCAAC
** *
30671854 ATAATAGTAAAATGGTAGCAA
1 ATAATAACAAAATAGTAGCAA
30671875 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAC
Found at i:30678867 original size:28 final size:29
Alignment explanation
Indices: 30678802--30678900 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
30678792 CATGAGATTG
* *
30678802 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
30678831 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
30678859 GCACTAAGTGTGCGA-GTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
30678887 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
30678901 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
27 4 0.06
28 42 0.66
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:30684517 original size:49 final size:49
Alignment explanation
Indices: 30684458--30684581 Score: 162
Period size: 49 Copynumber: 2.5 Consensus size: 49
30684448 ATCAAAGTCA
* *
30684458 ATGCTATATCCCAGACAGGTCTTACACTGACTTTCATATATCAAGGTG-AG
1 ATGCCATATCCCAGACAGGTCTTACACTGACTCTCATATATC--GGTGTAG
* * *
30684508 -TGTCATATCCCAGACAGGTCTTACACTGACTCTCATCTATCGGTGTCG
1 ATGCCATATCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGTAG
*
30684556 ATGCCATGTCCCAGACAGGTCTTACA
1 ATGCCATATCCCAGACAGGTCTTACA
30684582 TTAACACACA
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
47 4 0.06
48 1 0.02
49 60 0.92
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (49 bp):
ATGCCATATCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGTAG
Found at i:30684736 original size:94 final size:92
Alignment explanation
Indices: 30684604--30684818 Score: 263
Period size: 94 Copynumber: 2.3 Consensus size: 92
30684594 AAGCTGACGC
* *
30684604 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCAAGTCCTAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGCATATCTCGAGGCCGATGCAAGTCCTAGACATGTC
*
30684669 TTGCACTAGCTCTCTTCTCAATGTAG-ATG
66 TTACACTAGCTCTC--CT-AATGTAGCATG
* * * *
30684698 CATGTCCCAGACATGTCTTACACT-GACTTGCATCTCTCGAGGCCGATTCATGTCCTAGATATGT
1 CATGTCCCAGACATGTCTTACACTAG-CTTGCATATCTCGAGGCCGATGCAAGTCCTAGACATGT
* * *
30684762 CTTACACTGGCTCTCGTAATGTGGCCAATG
65 CTTACACTAGCTCTCCTAATGTAG-C-ATG
*
30684792 CATGTCCCACACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
30684819 ACACATATCA
Statistics
Matches: 105, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
91 6 0.06
92 1 0.01
93 1 0.01
94 96 0.91
95 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGCATATCTCGAGGCCGATGCAAGTCCTAGACATGTC
TTACACTAGCTCTCCTAATGTAGCATG
Found at i:30684762 original size:48 final size:48
Alignment explanation
Indices: 30684604--30684818 Score: 176
Period size: 46 Copynumber: 4.6 Consensus size: 48
30684594 AAGCTGACGC
* * *
30684604 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGCATCTCTCGAGGCCGATG
* * * * * **
30684652 CAAGTCCTAGACATGTCTTGCACTAGC-T-C-TCTTCTCAATGTAGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGCATC-TCTCGAGGCCGATG
*
30684698 CATGTCCCAGACATGTCTTACACT-GACTTGCATCTCTCGAGGCCGATT
1 CATGTCCCAGACATGTCTTACACTAG-CTTGCATCTCTCGAGGCCGATG
* * * * * *
30684746 CATGTCCTAGATATGTCTTACACTGGC-T-C-TCGTAAT-GTGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGCATC-T-CTCGAGGCCGATG
*
30684792 CATGTCCCACACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
30684819 ACACATATCA
Statistics
Matches: 131, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
45 4 0.03
46 64 0.49
47 4 0.03
48 56 0.43
49 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGCATCTCTCGAGGCCGATG
Found at i:30690895 original size:3 final size:3
Alignment explanation
Indices: 30690887--30690931 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
30690877 TTTAAACTTA
30690887 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
30690932 TCTTTACTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:30691196 original size:19 final size:19
Alignment explanation
Indices: 30691174--30691258 Score: 75
Period size: 19 Copynumber: 4.4 Consensus size: 19
30691164 TTATAAAAAC
30691174 TAAAAATAAATAAAATTTA
1 TAAAAATAAATAAAATTTA
* *
30691193 TAAAAAT-ATTAAATTTTAA
1 TAAAAATAAATAAAATTT-A
* **
30691212 TAAAATTATTTAAAATTTA
1 TAAAAATAAATAAAATTTA
*
30691231 TTAAAAATAGAA-AAAAATTA
1 -TAAAAATA-AATAAAATTTA
30691251 TAAAAATA
1 TAAAAATA
30691259 GTAAAAAATT
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
18 8 0.15
19 23 0.43
20 22 0.42
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (19 bp):
TAAAAATAAATAAAATTTA
Found at i:30691259 original size:19 final size:19
Alignment explanation
Indices: 30691232--30691273 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
30691222 TAAAATTTAT
30691232 TAAAAATAGAAAAAAATTA
1 TAAAAATAGAAAAAAATTA
*
30691251 TAAAAATAGTAAAAAATTA
1 TAAAAATAGAAAAAAATTA
30691270 -AAAA
1 TAAAA
30691274 TTTTAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (19 bp):
TAAAAATAGAAAAAAATTA
Found at i:30691496 original size:9 final size:9
Alignment explanation
Indices: 30691482--30691658 Score: 62
Period size: 9 Copynumber: 19.0 Consensus size: 9
30691472 TTTTGGTACG
30691482 ATAATTTTT
1 ATAATTTTT
30691491 ATAATTTTT
1 ATAATTTTT
* *
30691500 TTAAGAATTTT
1 AT-A-ATTTTT
*
30691511 ATATTTCTTT
1 ATAATT-TTT
*
30691521 ATATTTTTTT
1 ATA-ATTTTT
30691531 ATAATTTTCTT
1 ATAA-TTT-TT
* * *
30691542 ATGA-CTTG
1 ATAATTTTT
*
30691550 ATAAAATTTT
1 AT-AATTTTT
30691560 ATAATTTTT
1 ATAATTTTT
*
30691569 -T--TTTCT
1 ATAATTTTT
* *
30691575 AT-ATGTCT
1 ATAATTTTT
30691583 ATATAT-TTT
1 ATA-ATTTTT
30691592 ATAATTTTTT
1 ATAA-TTTTT
*
30691602 ACAATTTTT
1 ATAATTTTT
*
30691611 ATAAAGTTTT
1 AT-AATTTTT
*
30691621 AGAATATTTT
1 ATAAT-TTTT
30691631 -TACGATTTTT
1 ATA--ATTTTT
30691641 ATAATTTTT
1 ATAATTTTT
30691650 ATAATTTTT
1 ATAATTTTT
30691659 TCTATTTTTT
Statistics
Matches: 127, Mismatches: 22, Indels: 38
0.68 0.12 0.20
Matches are distributed among these distances:
6 4 0.03
7 1 0.01
8 11 0.09
9 49 0.39
10 44 0.35
11 18 0.14
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:30691601 original size:10 final size:10
Alignment explanation
Indices: 30691588--30691670 Score: 66
Period size: 9 Copynumber: 8.6 Consensus size: 10
30691578 TGTCTATATA
30691588 TTTTATAATT
1 TTTTATAATT
*
30691598 TTTTACAA-T
1 TTTTATAATT
**
30691607 TTTTATAAAG
1 TTTTATAATT
*
30691617 TTTTAGAATAT
1 TTTTATAAT-T
**
30691628 TTTTACGA-T
1 TTTTATAATT
30691637 TTTTATAA-T
1 TTTTATAATT
30691646 TTTTATAATT
1 TTTTATAATT
*
30691656 TTTTCT-ATT
1 TTTTATAATT
30691665 TTTTAT
1 TTTTAT
30691671 TTTTTATTAA
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
9 32 0.55
10 20 0.34
11 6 0.10
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:30691610 original size:19 final size:19
Alignment explanation
Indices: 30691588--30691676 Score: 71
Period size: 19 Copynumber: 4.8 Consensus size: 19
30691578 TGTCTATATA
30691588 TTTTATAATTTTTTACAAT
1 TTTTATAATTTTTTACAAT
** *
30691607 TTTTATAAAGTTTTAGAAT
1 TTTTATAATTTTTTACAAT
*
30691626 ATTTT-TACGA-TTTTTATAAT
1 -TTTTATA--ATTTTTTACAAT
*
30691646 TTTTATAATTTTTT-CTAT
1 TTTTATAATTTTTTACAAT
30691664 TTTT-T-ATTTTTTA
1 TTTTATAATTTTTTA
30691677 TTAAAATTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
16 7 0.12
17 1 0.02
18 7 0.12
19 27 0.47
20 14 0.25
21 1 0.02
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTATAATTTTTTACAAT
Found at i:30691633 original size:30 final size:29
Alignment explanation
Indices: 30691588--30691667 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
30691578 TGTCTATATA
*
30691588 TTTTATAATTTTTTACAATTTTTATAAAG
1 TTTTAGAATTTTTTACAATTTTTATAAAG
* *
30691617 TTTTAGAATATTTTTACGATTTTTAT-AAT
1 TTTTAGAAT-TTTTTACAATTTTTATAAAG
* *
30691646 TTTTATAATTTTTT-CTATTTTT
1 TTTTAGAATTTTTTACAATTTTT
30691668 TATTTTTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
27 7 0.16
28 5 0.11
29 18 0.40
30 15 0.33
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (29 bp):
TTTTAGAATTTTTTACAATTTTTATAAAG
Found at i:30693728 original size:39 final size:39
Alignment explanation
Indices: 30693674--30693755 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
30693664 TTATGTGTTT
* *
30693674 GATCTTCTCAATTTTACATGTTCGTTGGTTATATAAGTC
1 GATCTTCTCAATTTTACATGTTCGTTGATTATACAAGTC
*
30693713 GATCTTCTCAATTTTACTTGTTCGTTGATTATACAAGTC
1 GATCTTCTCAATTTTACATGTTCGTTGATTATACAAGTC
30693752 GATC
1 GATC
30693756 CCTAACAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.45
Consensus pattern (39 bp):
GATCTTCTCAATTTTACATGTTCGTTGATTATACAAGTC
Found at i:30704093 original size:21 final size:22
Alignment explanation
Indices: 30704067--30704107 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
30704057 CTGTTAACAC
30704067 AGAGGC-ACACGCCCGTGTGGG
1 AGAGGCAACACGCCCGTGTGGG
30704088 AGAGGCAACACGCCCGTGTG
1 AGAGGCAACACGCCCGTGTG
30704108 ACATTTCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.22, C:0.29, G:0.39, T:0.10
Consensus pattern (22 bp):
AGAGGCAACACGCCCGTGTGGG
Found at i:30710009 original size:26 final size:26
Alignment explanation
Indices: 30709980--30710032 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
30709970 GTGCTGGAAA
30709980 TGTATCCGGGCTAAAGTCCCGCAGGC
1 TGTATCCGGGCTAAAGTCCCGCAGGC
30710006 TGTATCCGGGCTAAAGTCCCGCAGGC
1 TGTATCCGGGCTAAAGTCCCGCAGGC
30710032 T
1 T
30710033 TTGTGCTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (26 bp):
TGTATCCGGGCTAAAGTCCCGCAGGC
Found at i:30716548 original size:40 final size:40
Alignment explanation
Indices: 30716504--30716738 Score: 339
Period size: 40 Copynumber: 5.9 Consensus size: 40
30716494 GGATATAGCT
* * *
30716504 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
30716544 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
30716584 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
30716624 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
30716664 ACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
30716703 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
30716739 CATCCGAATA
Statistics
Matches: 178, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.18
40 144 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:30724787 original size:40 final size:40
Alignment explanation
Indices: 30724738--30724940 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
30724728 CAGAATTTAA
* * *
30724738 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
30724778 CCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
30724818 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
30724858 CCGGATATAATAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
30724897 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
30724937 CCGG
1 CCGG
30724941 TTATCATCCG
Statistics
Matches: 145, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.23
40 110 0.76
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:30734017 original size:13 final size:13
Alignment explanation
Indices: 30734001--30734035 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
30733991 TAGTAAAAAA
*
30734001 AAATAAGGATAAT
1 AAATAAGAATAAT
*
30734014 AAATTAGAATAAT
1 AAATAAGAATAAT
30734027 AAATAAGAA
1 AAATAAGAA
30734036 ATCAAATCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (13 bp):
AAATAAGAATAAT
Found at i:30734359 original size:22 final size:23
Alignment explanation
Indices: 30734315--30734359 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
30734305 TTTTTAAAAT
*
30734315 TAAAATTTAATTATAAAAGTATA
1 TAAAATTCAATTATAAAAGTATA
30734338 TAAAATATCAATTA-AAAA-TATA
1 TAAAAT-TCAATTATAAAAGTATA
30734360 AAATACAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 10 0.50
24 6 0.30
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
TAAAATTCAATTATAAAAGTATA
Found at i:30737005 original size:45 final size:45
Alignment explanation
Indices: 30736955--30737042 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
30736945 GCAAAACATG
30736955 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTTATA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTTATA
*
30737000 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTTA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTTA
30737043 GATCACATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTTATA
Found at i:30742134 original size:39 final size:40
Alignment explanation
Indices: 30742044--30742175 Score: 214
Period size: 40 Copynumber: 3.3 Consensus size: 40
30742034 GCTACTCGTT
* *
30742044 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
30742084 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-CGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
30742123 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
30742163 CAAATGCCTTCGG
1 CAAATGCCTTCGG
30742176 ATCTTGGTCC
Statistics
Matches: 87, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
39 38 0.44
40 47 0.54
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:30762172 original size:18 final size:18
Alignment explanation
Indices: 30762149--30762202 Score: 108
Period size: 18 Copynumber: 3.0 Consensus size: 18
30762139 TGAGACAGAG
30762149 TCAGAATGAATTCGGATT
1 TCAGAATGAATTCGGATT
30762167 TCAGAATGAATTCGGATT
1 TCAGAATGAATTCGGATT
30762185 TCAGAATGAATTCGGATT
1 TCAGAATGAATTCGGATT
30762203 CCCCTATTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (18 bp):
TCAGAATGAATTCGGATT
Found at i:30769915 original size:29 final size:30
Alignment explanation
Indices: 30769862--30769934 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 30
30769852 GTTTCATATA
* *
30769862 ATATATAATATATACGTATAGGG-GTTGTATT
1 ATATATAATATATACGCATAGGGTGGT-TA-T
*
30769893 ATATATAATATATAGGCAT-GGGTGGTTAT
1 ATATATAATATATACGCATAGGGTGGTTAT
*
30769922 ACATATAATATAT
1 ATATATAATATAT
30769935 TATGTGTGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 13 0.35
30 5 0.14
31 19 0.51
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (30 bp):
ATATATAATATATACGCATAGGGTGGTTAT
Found at i:30787008 original size:19 final size:17
Alignment explanation
Indices: 30786976--30787018 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
30786966 CTACTTGTGC
*
30786976 ATTTATGTTTTGAACTTG
1 ATTTATGTTATGAA-TTG
30786994 ATTTGATGTTATGAATTG
1 ATTT-ATGTTATGAATTG
*
30787012 AATTATG
1 ATTTATG
30787019 ATAATACCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 10 0.45
19 9 0.41
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (17 bp):
ATTTATGTTATGAATTG
Found at i:30800415 original size:20 final size:19
Alignment explanation
Indices: 30800387--30800488 Score: 118
Period size: 19 Copynumber: 5.3 Consensus size: 19
30800377 AATTACAAAA
*
30800387 TAAAA-TCAAAGTAATTTT
1 TAAAATTCAAAATAATTTT
30800405 CTAAAATTCAAAATAATTTT
1 -TAAAATTCAAAATAATTTT
30800425 TAAAATTCAAAATAATTTT
1 TAAAATTCAAAATAATTTT
*
30800444 TAATATTCAAAAT-ATTTAT
1 TAAAATTCAAAATAATTT-T
* *
30800463 AAAAATTTCAAAATTTATTTT
1 TAAAA-TTCAAAA-TAATTTT
30800484 TAAAA
1 TAAAA
30800489 AAAATTCTAA
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
18 4 0.05
19 40 0.55
20 19 0.26
21 6 0.08
22 4 0.05
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (19 bp):
TAAAATTCAAAATAATTTT
Found at i:30801836 original size:10 final size:10
Alignment explanation
Indices: 30801821--30801948 Score: 86
Period size: 10 Copynumber: 13.3 Consensus size: 10
30801811 CTGGTTATAG
30801821 ATATATACAT
1 ATATATACAT
30801831 ATATATACAT
1 ATATATACAT
30801841 ATATAT--AT
1 ATATATACAT
* *
30801849 GTATATAGAT
1 ATATATACAT
* **
30801859 ATATGTATGT
1 ATATATACAT
**
30801869 ATATATGTAT
1 ATATATACAT
30801879 ATATATACAT
1 ATATATACAT
*
30801889 ACATAT--AT
1 ATATATACAT
* *
30801897 ATATGTATAT
1 ATATATACAT
* *
30801907 ATATGTATAT
1 ATATATACAT
*
30801917 ATACATACAT
1 ATATATACAT
*
30801927 ATATCTACAT
1 ATATATACAT
*
30801937 A-ATATATAT
1 ATATATACAT
30801946 ATA
1 ATA
30801949 ACGAACCAGT
Statistics
Matches: 93, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
8 13 0.14
9 7 0.08
10 73 0.78
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.43
Consensus pattern (10 bp):
ATATATACAT
Found at i:30801846 original size:4 final size:4
Alignment explanation
Indices: 30801816--30801948 Score: 115
Period size: 4 Copynumber: 33.5 Consensus size: 4
30801806 GGTTGCTGGT
* * * * * *
30801816 TATA GATA TATA CATA TATA TACA TATA TATA TGTA TATA GATA TATG
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * * *
30801864 TATG TATA TATG TATA TATA TACA TACA TATA TATA TGTA TATA TATG
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * *
30801912 TATA TATA CATA CATA TATC TACA TA-A TATA TATA TA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TA
30801949 ACGAACCAGT
Statistics
Matches: 103, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
3 3 0.03
4 100 0.97
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (4 bp):
TATA
Found at i:30807059 original size:40 final size:40
Alignment explanation
Indices: 30806975--30807158 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
30806965 TTGAATGCTG
* * * *
30806975 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
30807014 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
30807055 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
30807095 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
30807135 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
30807159 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:30807112 original size:80 final size:81
Alignment explanation
Indices: 30806975--30807155 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
30806965 TTGAATGCTG
* *
30806975 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
30807039 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
30807055 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
30807116 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
30807135 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
30807156 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:30825852 original size:26 final size:26
Alignment explanation
Indices: 30825823--30825873 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30825813 TACATGCCAT
*
30825823 CCATAACACTCATT-AACCATAAGCAG
1 CCATAAC-CACATTAAACCATAAGCAG
*
30825849 CCATAACCACATTAAAGCATAAGCA
1 CCATAACCACATTAAACCATAAGCA
30825874 CATTTGCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.45, C:0.29, G:0.08, T:0.18
Consensus pattern (26 bp):
CCATAACCACATTAAACCATAAGCAG
Found at i:30828615 original size:27 final size:26
Alignment explanation
Indices: 30828555--30828667 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
30828545 AGGAAGCGCC
* *
30828555 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
*
30828583 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
30828610 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
30828638 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
30828664 CTGG
1 CTGG
30828668 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 7 0.09
27 37 0.49
28 32 0.42
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:30828640 original size:55 final size:54
Alignment explanation
Indices: 30828555--30828667 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
30828545 AGGAAGCGCC
* *
30828555 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
30828610 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
30828664 CTGG
1 CTGG
30828668 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 19 0.37
55 33 0.63
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:30832808 original size:40 final size:40
Alignment explanation
Indices: 30832705--30832808 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
30832695 CTATCGTGGT
* *
30832705 ATCGCACACTCAGTGCCACATATAGCTGAAGCTATTCCAA
1 ATCGCACACTAAGTGCCAAATATAGCTGAAGCTATTCCAA
* * * * **
30832745 TTCGCACACTAAATGCTATATATAGCTGAAGCTATTTTGAA
1 ATCGCACACTAAGTGCCAAATATAGCTGAAGCTA-TTCCAA
30832786 AT-GCACACTAAGTGCCAAATATA
1 ATCGCACACTAAGTGCCAAATATA
30832809 TTAGATTTGT
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
40 47 0.90
41 5 0.10
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (40 bp):
ATCGCACACTAAGTGCCAAATATAGCTGAAGCTATTCCAA
Found at i:30838624 original size:19 final size:19
Alignment explanation
Indices: 30838600--30838638 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
30838590 GTGATTTATG
30838600 TTAATGTGCCTTACTTGTA
1 TTAATGTGCCTTACTTGTA
30838619 TTAATGTGCCTTACTTGTA
1 TTAATGTGCCTTACTTGTA
30838638 T
1 T
30838639 GTTATGATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49
Consensus pattern (19 bp):
TTAATGTGCCTTACTTGTA
Found at i:30847196 original size:43 final size:42
Alignment explanation
Indices: 30847116--30847262 Score: 120
Period size: 43 Copynumber: 3.4 Consensus size: 42
30847106 TTCCAATATG
* * * * **
30847116 TGATTTTCGTGTAAGACCACGTCTAGGACGTTGGCATC-AATT
1 TGATTATC-TGTAAGACCATGTCTGGGACATCAGCATCGAATT
*
30847158 TGAAATTATCTGTAAGACCATGTCTGGGACATCAGCATCGTATT
1 TG--ATTATCTGTAAGACCATGTCTGGGACATCAGCATCGAATT
* * * *
30847202 TGATTTTGTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATT
1 TGATTATCTGTAAGACCATGTCTGGGACA-TCAGCATCGA-ATT
30847245 TGATTA-CATGTAAGACCA
1 TGATTATC-TGTAAGACCA
30847263 CGTGTAACGC
Statistics
Matches: 84, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
42 32 0.38
43 42 0.50
44 10 0.12
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
TGATTATCTGTAAGACCATGTCTGGGACATCAGCATCGAATT
Found at i:30847224 original size:42 final size:43
Alignment explanation
Indices: 30847111--30847249 Score: 126
Period size: 42 Copynumber: 3.2 Consensus size: 43
30847101 AGGATTTCCA
* * * *
30847111 ATATGTGATTTTCGTGTAAGACCACGTCTAGGAC-GTTGGCATC-
1 ATATTTGATTTT-GTGTAAGACCATGTCTGGGACAG-TAGCATCG
* *
30847154 A-ATTTGAAATTATCTGTAAGACCATGTCTGGGACA-TCAGCATCG
1 ATATTTG--ATTTTGTGTAAGACCATGTCTGGGACAGT-AGCATCG
* *
30847198 -TATTTGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 ATATTTGATTTTGTGTAAGACCATGTCTGGGACAGTAGCATCG
30847240 ATATTTGATT
1 ATATTTGATT
30847250 ACATGTAAGA
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
42 35 0.45
43 34 0.44
44 9 0.12
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (43 bp):
ATATTTGATTTTGTGTAAGACCATGTCTGGGACAGTAGCATCG
Found at i:30849337 original size:27 final size:27
Alignment explanation
Indices: 30849306--30849366 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
30849296 TTTATTAAAC
* *
30849306 TACCCCTAAGTATG-AAAATTACCGTTT
1 TACCCCTAAG-ATGCAAAATGACCGTTA
*
30849333 TACCCCT-AGGTGCAAAATGACCGTTA
1 TACCCCTAAGATGCAAAATGACCGTTA
30849359 TACCCCTA
1 TACCCCTA
30849367 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.69
27 7 0.24
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (27 bp):
TACCCCTAAGATGCAAAATGACCGTTA
Found at i:30849712 original size:20 final size:21
Alignment explanation
Indices: 30849669--30849714 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
30849659 AATGTTTTGT
30849669 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
30849689 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
30849708 TATGGGC
1 TATGGGC
30849715 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Done.