Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_3623
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17843
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Found at i:786 original size:17 final size:17
Alignment explanation
Indices: 766--798 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
756 TTTTATTACC
766 TAATAT-TTATTATTTTT
1 TAATATATTA-TATTTTT
783 TAATATATTATATTTT
1 TAATATATTATATTTT
799 GTATATTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TAATATATTATATTTTT
Found at i:1230 original size:16 final size:17
Alignment explanation
Indices: 1198--1230 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1188 TAATATTGTG
1198 TTTACTATTATTTACCT
1 TTTACTATTATTTACCT
1215 TTTACTATTA-TTACCT
1 TTTACTATTATTTACCT
1231 ATTATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTACTATTATTTACCT
Found at i:1237 original size:27 final size:26
Alignment explanation
Indices: 1202--1253 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
1192 ATTGTGTTTA
1202 CTATTA-TTTACCTTTTACTATTATTAC
1 CTATTATTTTA-CTTTTA-TATTATTAC
*
1229 CTATTATTTTATTTTTATATTATTA
1 CTATTATTTTACTTTTATATTATTA
1254 AGTTATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 11 0.48
28 4 0.17
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.62
Consensus pattern (26 bp):
CTATTATTTTACTTTTATATTATTAC
Found at i:1379 original size:25 final size:27
Alignment explanation
Indices: 1316--1379 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 27
1306 AATTATATTC
*
1316 ATATATATTTTTTGTACATATCATTAT
1 ATATATATTTGTTGTACATATCATTAT
* *
1343 TTATATCA-TTGTTGTA-ATA-CTTTAT
1 ATATAT-ATTTGTTGTACATATCATTAT
1368 ATATATATTTGT
1 ATATATATTTGT
1380 GCGTTTCCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
24 1 0.03
25 14 0.45
26 3 0.10
27 12 0.39
28 1 0.03
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.56
Consensus pattern (27 bp):
ATATATATTTGTTGTACATATCATTAT
Found at i:2945 original size:6 final size:6
Alignment explanation
Indices: 2934--2980 Score: 85
Period size: 6 Copynumber: 7.7 Consensus size: 6
2924 CCATTATCCA
2934 TTATTT TTATTTT TTATTT TTATTT TTATTT TTATTT TTATTT TTAT
1 TTATTT TTA-TTT TTATTT TTATTT TTATTT TTATTT TTATTT TTAT
2981 ATTATAATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 34 0.85
7 6 0.15
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTATTT
Found at i:3512 original size:28 final size:28
Alignment explanation
Indices: 3472--3530 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
3462 CTAGGGCTCT
3472 AAAGTAGATTATCTTTAGGATTGAGGCA
1 AAAGTAGATTATCTTTAGGATTGAGGCA
3500 AAAGTAGATTATCTTTAGGATTGAGGCA
1 AAAGTAGATTATCTTTAGGATTGAGGCA
3528 AAA
1 AAA
3531 TGATGTGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.31
Consensus pattern (28 bp):
AAAGTAGATTATCTTTAGGATTGAGGCA
Found at i:7896 original size:20 final size:19
Alignment explanation
Indices: 7844--7889 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
7834 AAATACCAAA
*
7844 TTTTTTTTACATTTATAAC
1 TTTTTTTTACTTTTATAAC
* *
7863 TTTTTATTACTTTTATAAA
1 TTTTTTTTACTTTTATAAC
7882 TTTTTTTT
1 TTTTTTTT
7890 TAGTTTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTTTTTACTTTTATAAC
Found at i:12357 original size:20 final size:21
Alignment explanation
Indices: 12332--12373 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
12322 CAGAGGACTC
12332 TCAACAAG-TGCACTAAGATG
1 TCAACAAGTTGCACTAAGATG
12352 TCAACAAGTTGCACTAAGATG
1 TCAACAAGTTGCACTAAGATG
12373 T
1 T
12374 GACTGGAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (21 bp):
TCAACAAGTTGCACTAAGATG
Found at i:13119 original size:218 final size:217
Alignment explanation
Indices: 12723--14251 Score: 1277
Period size: 217 Copynumber: 6.9 Consensus size: 217
12713 TTTTAGAGAT
* * * *
12723 ATGAGTGACAACCTTAAAAGGTCAAATGGTA-TTATGATCAACATATGTTAGGAACATGTGTGGT
1 ATGAGTGACGACCTTGAAAGGTCAAATGGTACTTATGATTAACATATGTTAGGAACATGCGTGGT
* * * ** ** *
12787 CATAAGCATTTTGATTTTTGGGTTTTTGTGACTTTTGCATTAATGAAA-GTGATACATGTTTCCA
66 AATAAGC-GTTCGATTTTCAGG-TTTTGCAACTTTTGCATTAAT-AAATGTGATACACGTTTCCA
* * * *
12851 TGTGATTGAGTATTGAAGCGATATGACAATTATTAATTTTTCCACATATTTATTGTCGGGTTGTT
128 TGTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGAGTTGTT
* *
12916 AGTGAGCAGCCATAACATTGGGAAC
193 AGTGAACAGCCATAACGTTGGGAAC
* * * * * *
12941 ATGAGTGACGACCTTGAAAGGTCAAATGGTGCTTATGATTAGCATAGGTTGGGAACATGTGTAGT
1 ATGAGTGACGACCTTGAAAGGTCAAATGGTACTTATGATTAACATATGTTAGGAACATGCGTGGT
* * *
13006 AATAAGCGTTGCAATTTTTAGGTTTTGCAACTTTTGCATTAATAAATCTGATACACGTTTCCATG
66 AATAAGCGTT-CGATTTTCAGGTTTTGCAACTTTTGCATTAATAAATGTGATACACGTTTCCATG
* * * * * *
13071 TGACTGAGTATTAAAGCAATGTGACAATCATTAACTTTTCCTCATATTTATTGTTGATTTGTTAG
130 TGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGAGTTGTTAG
* *
13136 TGAACAGTCAGAACGTTGGGAAC
195 TGAACAGCCATAACGTTGGGAAC
** * *
13159 ATGAGTGACGACCTTGAAA-GTCATTTGGTACTTATAATTAACGTATGTTAGGAACATGCGTGGT
1 ATGAGTGACGACCTTGAAAGGTCAAATGGTACTTATGATTAACATATGTTAGGAACATGCGTGGT
* * * *
13223 AATAAGCGTTCTGATTTTCAAGGATTTGCGAA-TTTTGCATTAATAAATGTGATATACATTTTCA
66 AATAAGCGTTC-GATTTTC-AGGTTTTGC-AACTTTTGCATTAATAAATGTGATACACGTTTCCA
* * * * *
13287 TGTGACTGAGTATTGAAGCGACATGACAATCATTAACTTTTCCTCGTATTTATTGTCGATTTGCT
128 TGTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGAGTTGTT
*
13352 AGT-AACAGTCATAACGTTGGGAAC
193 AGTGAACAGCCATAACGTTGGGAAC
* ** * * *
13376 ATAAGTGGTGACCTTGAAA-GTCAACTGGTACTTATAATTAACATATGTTAGGAACATGCATGGT
1 ATGAGTGACGACCTTGAAAGGTCAAATGGTACTTATGATTAACATATGTTAGGAACATGCGTGGT
* ** ** ** *
13440 AATAAGCATTCTGATTTTCAGGGAGTTGTGACTTTAACATTAATGAATGTGATACACGTTTCCAT
66 AATAAGCGTTC-GATTTTCA-GGTTTTGCAACTTTTGCATTAATAAATGTGATACACGTTTCCAT
* * * *
13505 GTGATTGAATATTGAAGCGAT-TCGACAATCATTAAATTTT-GTACATACTTATTGTC-AGTCTG
129 GTGATTGAGTATTGAAGCGATAT-GACAATCATTAACTTTTCCT-CATATTTATTGTCGAGT-TG
* *
13567 TTAGTGAGCAGCCATAACGTTGAGAAC
191 TTAGTGAACAGCCATAACGTTGGGAAC
* ** ** * * * * *
13594 ATGA-TGATGACCTTGAAAGGTCAGTTGGTGTTTATGATTAGCATACGTTGGGAACACGCATGGT
1 ATGAGTGACGACCTTGAAAGGTCAAATGGTACTTATGATTAACATATGTTAGGAACATGCGTGGT
* * *
13658 AATAAACGGTTCGGTTTTGCGGGTTTTGCAACTTTTGCATTAATAAATGTGATACACGTTTCCAT
66 AATAAGC-GTTCGATTTT-CAGGTTTTGCAACTTTTGCATTAATAAATGTGATACACGTTTCCAT
* * *** * ** * *
13723 GTGATTGATTATTGAAGCAATATGTTTGATTATTGAAGCGATATGACAATCATTAACTTTTCCTT
129 GTGATTGAGTATTGAAGCGATATG-ACAATCATT-AA-C--T-TTTC-CTCA-T-A--TTT-ATT
** * * * ** * * *
13788 GTATTTATTATCGATTTGTTAGTGAACAATCAAAATGTTGGGAAC
182 G--TCGAGT-T-G-TTAGTGA-ACAGC---CATAACGTTGGGAAC
* * * * *
13833 ATGAGTGATGACCTTGAAA-GTCAATTGGTACTTATAATTAGCGTATGTTAGGAACATGCGTGGT
1 ATGAGTGACGACCTTGAAAGGTCAAATGGTACTTATGATTAACATATGTTAGGAACATGCGTGGT
* * ** * * * * *
13897 AACAAGCGCTCTGATTTTTTGGGATTTGCAACTTTTGCATTAATAAATGTAATGCACATTTTCAT
66 AATAAGCGTTC-GA-TTTTCAGGTTTTGCAACTTTTGCATTAATAAATGTGATACACGTTTCCAT
* * * *
13962 GTGATTGAGTATTGAATCGATATAACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGCTA
129 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGAGTTGTTA
* *
14027 GTG-ACTGTCATAACGTTGGGAAC
194 GTGAACAGCCATAACGTTGGGAAC
* ** * * * * * *
14050 ATGAGTGACAACAATGAAA-GTCAACTTGTACTTATAATTAACGTATGTTAGGAACATGTGTAGT
1 ATGAGTGACGACCTTGAAAGGTCAAATGGTACTTATGATTAACATATGTTAGGAACATGCGTGGT
* * ** * * *
14114 AATAAGCGTTTTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCAT
66 AATAAGCG-TTCGATTTTCA-GGTTTTGCAACTTTTGCATTAATAAATGTGATACACGTTTCCAT
* * * * * * * * *
14179 GTGATTGAATATTGAAGTGATACGACAATCATTGACTTTTGCACATACTTATTATC-AGTTTGGT
129 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGAG-TTGTT
14243 AGTGAACAG
193 AGTGAACAG
14252 ACGTAACTTT
Statistics
Matches: 1057, Mismatches: 209, Indels: 90
0.78 0.15 0.07
Matches are distributed among these distances:
216 12 0.01
217 411 0.39
218 384 0.36
219 54 0.05
220 2 0.00
222 3 0.00
223 2 0.00
224 2 0.00
225 6 0.01
226 2 0.00
227 4 0.00
228 3 0.00
229 2 0.00
230 4 0.00
231 1 0.00
232 4 0.00
233 5 0.00
234 2 0.00
235 5 0.00
236 3 0.00
237 2 0.00
238 8 0.01
239 118 0.11
240 18 0.02
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (217 bp):
ATGAGTGACGACCTTGAAAGGTCAAATGGTACTTATGATTAACATATGTTAGGAACATGCGTGGT
AATAAGCGTTCGATTTTCAGGTTTTGCAACTTTTGCATTAATAAATGTGATACACGTTTCCATGT
GATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGAGTTGTTAGT
GAACAGCCATAACGTTGGGAAC
Found at i:13408 original size:217 final size:218
Alignment explanation
Indices: 12723--14251 Score: 1017
Period size: 218 Copynumber: 6.9 Consensus size: 218
12713 TTTTAGAGAT
* * * * * *
12723 ATGAGTGACAACCTTAAAAGGTCAAATGGTA-TTATGATCAACATATGTTAGGAACATGTGTGGT
1 ATGAGTGACGACCTTGAAA-GTCAATTGGTACTTATAATTAACATATGTTAGGAACATGCGTGGT
* * * * * * * ** *
12787 CATAAGCATTTTGATTTT-TGGGTTTTTGTGACTTTTGCATTAATGAAA-GTGATACATGTTTCC
65 AATAAGCGTTCTGATTTTCAGGG-ATTTGCGAATTTTGCATTAAT-AAATGTGATACACATTTTC
* * * **
12850 ATGTGATTGAGTATTGAAGCGATATGACAATTATTAATTTTTCCACATATTTATTGTCGGGTTGT
128 ATGTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGT
* * *
12915 TAGTGAGCAGCCATAACATTGGGAAC
193 TAGTGAACAGTCATAACGTTGGGAAC
* * * * * * * *
12941 ATGAGTGACGACCTTGAAAGGTCAAATGGTGCTTATGATTAGCATAGGTTGGGAACATGTGTAGT
1 ATGAGTGACGACCTTGAAA-GTCAATTGGTACTTATAATTAACATATGTTAGGAACATGCGTGGT
* * * * * *
13006 AATAAGCGTTGC-AATTTTTA-GGTTTTGC-AACTTTTGCATTAATAAATCTGATACACGTTTCC
65 AATAAGCGTT-CTGATTTTCAGGGATTTGCGAA-TTTTGCATTAATAAATGTGATACACATTTTC
* * * * *
13068 ATGTGACTGAGTATTAAAGCAATGTGACAATCATTAACTTTTCCTCATATTTATTGTTGATTTGT
128 ATGTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGT
*
13133 TAGTGAACAGTCAGAACGTTGGGAAC
193 TAGTGAACAGTCATAACGTTGGGAAC
* *
13159 ATGAGTGACGACCTTGAAAGTCATTTGGTACTTATAATTAACGTATGTTAGGAACATGCGTGGTA
1 ATGAGTGACGACCTTGAAAGTCAATTGGTACTTATAATTAACATATGTTAGGAACATGCGTGGTA
* *
13224 ATAAGCGTTCTGATTTTCAAGGATTTGCGAATTTTGCATTAATAAATGTGATATACATTTTCATG
66 ATAAGCGTTCTGATTTTCAGGGATTTGCGAATTTTGCATTAATAAATGTGATACACATTTTCATG
* * * *
13289 TGACTGAGTATTGAAGCGACATGACAATCATTAACTTTTCCTCGTATTTATTGTCGATTTGCTAG
131 TGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTAG
13354 T-AACAGTCATAACGTTGGGAAC
196 TGAACAGTCATAACGTTGGGAAC
* ** * *
13376 ATAAGTGGTGACCTTGAAAGTCAACTGGTACTTATAATTAACATATGTTAGGAACATGCATGGTA
1 ATGAGTGACGACCTTGAAAGTCAATTGGTACTTATAATTAACATATGTTAGGAACATGCGTGGTA
* * * * ** * * *
13441 ATAAGCATTCTGATTTTCAGGGAGTTGTGACTTTAACATTAATGAATGTGATACACGTTTCCATG
66 ATAAGCGTTCTGATTTTCAGGGATTTGCGAATTTTGCATTAATAAATGTGATACACATTTTCATG
* * * * *
13506 TGATTGAATATTGAAGCGAT-TCGACAATCATTAAATTTT-GTACATACTTATTGTC-AGTCTGT
131 TGATTGAGTATTGAAGCGATAT-GACAATCATTAACTTTTCCT-CATATTTATTGTCGA-TTTGT
* * *
13568 TAGTGAGCAGCCATAACGTTGAGAAC
193 TAGTGAACAGTCATAACGTTGGGAAC
* * ** * * * * * *
13594 ATGA-TGATGACCTTGAAAGGTCAGTTGGTGTTTATGATTAGCATACGTTGGGAACACGCATGGT
1 ATGAGTGACGACCTTGAAA-GTCAATTGGTACTTATAATTAACATATGTTAGGAACATGCGTGGT
* * * * *
13658 AATAAACGGTTC-GGTTTTGC-GGGTTTTGC-AACTTTTGCATTAATAAATGTGATACACGTTTC
65 AATAAGC-GTTCTGATTTT-CAGGGATTTGCGAA-TTTTGCATTAATAAATGTGATACACATTTT
* * *** * ** *
13720 CATGTGATTGATTATTGAAGCAATATGTTTGATTATTGAAGCGATATGACAATCATTAACTTTTC
127 CATGTGATTGAGTATTGAAGCGATATG-ACAATCATT-AA-C--T-TTTC-CTCA-T-A--TTT-
* * *** * ** * *
13785 CTTGT--ATTTATTA-TCGATTTGTTAGTGAACAAT--CAAA
180 ATTGTCGATTTGTTAGT-GAACAGTCA-T-AACGTTGGGAAC
* * * * ** * * * * * *
13822 ATG-TTG-GGAACATGAGTGATGACCTTGAAAGTCAATTGGTACTTATA-AT-TAGCGTATGTTA
1 ATGAGTGACGACCTTGAAAG-TCA-ATTG---GT-ACTT-ATAATTA-ACATAT-G-TTA-G---
* *** * * * **
13883 GGA-ACATGCGTGGTAACAAGCGCTCTGATTTTTTGGGATTTGC-AACTTTTGCATTAATAAATG
52 GAACATGCGTG--GTAATAAGCGTTCTGATTTTCAGGGATTTGCGAA-TTTTGCATTAATAAATG
* * * *
13946 TAATGCACATTTTCATGTGATTGAGTATTGAATCGATATAACAATCATTAACTTTTCCTCATATT
114 TGATACACATTTTCATGTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATT
* *
14011 TATTGTCGATTTGCTAGTG-ACTGTCATAACGTTGGGAAC
179 TATTGTCGATTTGTTAGTGAACAGTCATAACGTTGGGAAC
* ** * * *
14050 ATGAGTGACAACAATGAAAGTCAACTT-GTACTTATAATTAACGTATGTTAGGAACATGTGTAGT
1 ATGAGTGACGACCTTGAAAGTCAA-TTGGTACTTATAATTAACATATGTTAGGAACATGCGTGGT
* * * * * ** *
14114 AATAAGCGTTTTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCAT
65 AATAAGCGTTCTGATTTTCAGGGATTTGCGAATTTTGCATTAATAAATGTGATACACATTTTCAT
* * * * * * * * *
14179 GTGATTGAATATTGAAGTGATACGACAATCATTGACTTTTGCACATACTTATTATC-AGTTTGGT
130 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGA-TTTGTT
14243 AGTGAACAG
194 AGTGAACAG
14252 ACGTAACTTT
Statistics
Matches: 1018, Mismatches: 227, Indels: 132
0.74 0.16 0.10
Matches are distributed among these distances:
216 5 0.00
217 358 0.35
218 380 0.37
219 58 0.06
220 2 0.00
221 1 0.00
222 3 0.00
223 8 0.01
224 5 0.00
225 4 0.00
226 7 0.01
227 15 0.01
228 31 0.03
229 17 0.02
230 16 0.02
231 3 0.00
232 5 0.00
233 9 0.01
234 2 0.00
235 1 0.00
236 1 0.00
237 5 0.00
238 10 0.01
239 72 0.07
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (218 bp):
ATGAGTGACGACCTTGAAAGTCAATTGGTACTTATAATTAACATATGTTAGGAACATGCGTGGTA
ATAAGCGTTCTGATTTTCAGGGATTTGCGAATTTTGCATTAATAAATGTGATACACATTTTCATG
TGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTAG
TGAACAGTCATAACGTTGGGAAC
Found at i:13751 original size:21 final size:21
Alignment explanation
Indices: 13727--13767 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
13717 TTCCATGTGA
13727 TTGATTATTGAAGCAATATGT
1 TTGATTATTGAAGCAATATGT
*
13748 TTGATTATTGAAGCGATATG
1 TTGATTATTGAAGCAATATG
13768 ACAATCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (21 bp):
TTGATTATTGAAGCAATATGT
Found at i:15796 original size:33 final size:33
Alignment explanation
Indices: 15748--15817 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
15738 TTGTCATCAT
*
15748 ATTAATGTGTCATCATCATTACATAAACTTAAC
1 ATTAATGTATCATCATCATTACATAAACTTAAC
* **
15781 ATTAATGTATTATCATCATTATTTAAACTTAAC
1 ATTAATGTATCATCATCATTACATAAACTTAAC
15814 ATTA
1 ATTA
15818 CTCATTAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.04, T:0.41
Consensus pattern (33 bp):
ATTAATGTATCATCATCATTACATAAACTTAAC
Done.