Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_372
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 84921
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Found at i:1284 original size:29 final size:29
Alignment explanation
Indices: 1205--1284 Score: 133
Period size: 29 Copynumber: 2.8 Consensus size: 29
1195 GAATATAACA
* *
1205 TGATTTGGGCCTAATGGGCCACATAAATG
1 TGATTTGGGCCTAATGGGCCATAGAAATG
*
1234 TGATTTGGGCCTAAAGGGCCATAGAAATG
1 TGATTTGGGCCTAATGGGCCATAGAAATG
1263 TGATTTGGGCCTAATGGGCCAT
1 TGATTTGGGCCTAATGGGCCAT
1285 GTGAATATAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
TGATTTGGGCCTAATGGGCCATAGAAATG
Found at i:3755 original size:26 final size:27
Alignment explanation
Indices: 3726--3780 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
3716 CCCTTAACTA
3726 ATAAAATGACTATTATG-CCCTATGTG
1 ATAAAATGACTATTATGCCCCTATGTG
*
3752 ATAAAATTACTATTATGCCCCTATGTG
1 ATAAAATGACTATTATGCCCCTATGTG
3779 AT
1 AT
3781 GTATGATTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (27 bp):
ATAAAATGACTATTATGCCCCTATGTG
Found at i:8126 original size:21 final size:21
Alignment explanation
Indices: 8102--8143 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8092 ATTACTCAAG
*
8102 GGAAATCAATTGATCCATCTC
1 GGAAACCAATTGATCCATCTC
* *
8123 GGAAGCCGATTGATCCATCTC
1 GGAAACCAATTGATCCATCTC
8144 AGAAGCCGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (21 bp):
GGAAACCAATTGATCCATCTC
Found at i:8148 original size:21 final size:21
Alignment explanation
Indices: 8110--8151 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
8100 AGGGAAATCA
*
8110 ATTGATCCATCTCGGAAGCCG
1 ATTGATCCATCTCAGAAGCCG
8131 ATTGATCCATCTCAGAAGCCG
1 ATTGATCCATCTCAGAAGCCG
8152 GATTCATTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
ATTGATCCATCTCAGAAGCCG
Found at i:12872 original size:45 final size:45
Alignment explanation
Indices: 12822--12909 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
12812 ACATGGGCCC
*
12822 GTATTATGGGCTGTGGGTCCATTTTTATTGTTTGACTGTTAAGCT
1 GTATTATGGGCTGTGGGTCCATTTTTACTGTTTGACTGTTAAGCT
12867 GTATTATGGGCTGTGGGTCCATTTTTACTGTTTGACTGTTAAG
1 GTATTATGGGCTGTGGGTCCATTTTTACTGTTTGACTGTTAAG
12910 GTTGCACGGG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.16, C:0.11, G:0.27, T:0.45
Consensus pattern (45 bp):
GTATTATGGGCTGTGGGTCCATTTTTACTGTTTGACTGTTAAGCT
Found at i:13007 original size:26 final size:27
Alignment explanation
Indices: 12978--13034 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
12968 GACCCTTAAC
*
12978 TGATAAAATGGCTATTATG-CCCTATG
1 TGATAAAATGACTATTATGTCCCTATG
* *
13004 TGATAAAATGATTGTTATGTCCCTATG
1 TGATAAAATGACTATTATGTCCCTATG
13031 TGAT
1 TGAT
13035 GTATGATTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (27 bp):
TGATAAAATGACTATTATGTCCCTATG
Found at i:13361 original size:17 final size:18
Alignment explanation
Indices: 13339--13372 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13329 CACATTGAAG
13339 TGTTTT-AGTGAAAACCA
1 TGTTTTCAGTGAAAACCA
*
13356 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
13373 CTTCTTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCA
Found at i:14454 original size:29 final size:30
Alignment explanation
Indices: 14378--14461 Score: 102
Period size: 28 Copynumber: 2.9 Consensus size: 30
14368 CCCTACATAC
*
14378 ATTCATATGGCCCATTTGGCCCAATCTCAT
1 ATTCATATGGCCCATTAGGCCCAATCTCAT
* *
14408 -TT-ATATGGCCCATCAGGCCTAAT-TCAT
1 ATTCATATGGCCCATTAGGCCCAATCTCAT
*
14435 ATTCATATGGCCTATTAGGCCCCAATC
1 ATTCATATGGCCCATTAGG-CCCAATC
14462 ACATGCATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
27 4 0.09
28 20 0.45
29 15 0.34
30 5 0.11
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (30 bp):
ATTCATATGGCCCATTAGGCCCAATCTCAT
Found at i:14470 original size:29 final size:28
Alignment explanation
Indices: 14376--14471 Score: 102
Period size: 29 Copynumber: 3.4 Consensus size: 28
14366 AACCCTACAT
*
14376 ACATTCATATGGCCCATTTGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* * * *
14404 TCATTTATATGGCCCATCAGGCCTAATTC
1 ACATTCATATGGCCCATTAGGCCCAA-TC
* *
14433 ATATTCATATGGCCTATTAGGCCCCAATC
1 ACATTCATATGGCCCATTAGG-CCCAATC
*
14462 ACATGCATAT
1 ACATTCATAT
14472 TCATGCTTAC
Statistics
Matches: 53, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 21 0.40
29 28 0.53
30 4 0.08
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:19739 original size:28 final size:28
Alignment explanation
Indices: 19699--19754 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
19689 ATCAACACCC
*
19699 TGAGGCTATCTCTAAGTCCATCGTCAAA
1 TGAGGCTATCTCTAAGTCCATCCTCAAA
19727 TGAGGCTATCTCTAAGTCCATCCTCAAA
1 TGAGGCTATCTCTAAGTCCATCCTCAAA
19755 CCTAACGCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (28 bp):
TGAGGCTATCTCTAAGTCCATCCTCAAA
Found at i:21977 original size:29 final size:29
Alignment explanation
Indices: 21904--22015 Score: 113
Period size: 29 Copynumber: 3.9 Consensus size: 29
21894 ACATGCATAG
* * *
21904 GGCCCACTTGGCCCAA-TCTCAGTTATAT
1 GGCCCACTAGGCCCAATTCACATTTATAT
21932 GGCCCA-TCAGGCCCAATTCACATTTATAT
1 GGCCCACT-AGGCCCAATTCACATTTATAT
* * *
21961 GGCCTACTA-GCCTCAATTCATATTAATAT
1 GGCCCACTAGGCC-CAATTCACATTTATAT
* *
21990 GGCCCATTAGGCCCAACTCACATTTA
1 GGCCCACTAGGCCCAATTCACATTTA
22016 ATTTTCACCT
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
27 1 0.01
28 16 0.24
29 47 0.69
30 4 0.06
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
GGCCCACTAGGCCCAATTCACATTTATAT
Found at i:25920 original size:27 final size:26
Alignment explanation
Indices: 25860--25970 Score: 123
Period size: 27 Copynumber: 4.2 Consensus size: 26
25850 TGGAAGCGTC
* * *
25860 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
25887 CTAGTGGCTCCGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
* *
25914 TTGGTGGCTCTGCCACGATTATCTGTA
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
25941 CTGGTGGCTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
25967 CTGG
1 CTGG
25971 CAGTCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 15 0.21
27 53 0.76
28 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:33727 original size:26 final size:26
Alignment explanation
Indices: 33659--33767 Score: 130
Period size: 27 Copynumber: 4.1 Consensus size: 26
33649 AGGAAGCGTC
* * *
33659 CTGGTAGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
33686 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
33713 CTGG-GGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
33740 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
33766 CT
1 CT
33768 AGCAGCCATG
Statistics
Matches: 73, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
26 23 0.32
27 41 0.56
28 9 0.12
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:37288 original size:40 final size:40
Alignment explanation
Indices: 37230--37333 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
37220 TGACGACAAA
* * *
37230 TCAGCTATTTGTGGCACTTAGTGTACGA-TTCAAAATAGCT
1 TCAGCTATATATGGCACTTAGTGTACAATTTC-AAATAGCT
* * *
37270 TCGGCTATATATGGCACTTAGTGTGCAATTTCAGATAGCT
1 TCAGCTATATATGGCACTTAGTGTACAATTTCAAATAGCT
* * *
37310 TCAGCTATGTACGACACTTAGTGT
1 TCAGCTATATATGGCACTTAGTGT
37334 GCAAGATATC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 50 0.94
41 3 0.06
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (40 bp):
TCAGCTATATATGGCACTTAGTGTACAATTTCAAATAGCT
Found at i:37368 original size:28 final size:28
Alignment explanation
Indices: 37324--37418 Score: 118
Period size: 28 Copynumber: 3.4 Consensus size: 28
37314 CTATGTACGA
*
37324 CACTTAGTGTGCAAGATATCGAGTGTGG
1 CACTTAGTGTGCGAGATATCGAGTGTGG
* * *
37352 CACTTAGTGTGTGAGATACCAAGTGTGG
1 CACTTAGTGTGCGAGATATCGAGTGTGG
* * * *
37380 CCCTTAGTGTGCGAGATATTGAATATGG
1 CACTTAGTGTGCGAGATATCGAGTGTGG
37408 CACTTAGTGTG
1 CACTTAGTGTG
37419 TGAGGCATTG
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCGAGATATCGAGTGTGG
Found at i:38799 original size:22 final size:20
Alignment explanation
Indices: 38769--38812 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
38759 AATTTATGTG
*
38769 AATGAATGCTTTATGCTTGATA
1 AATGAATGCTATATG-TTG-TA
*
38791 AATGTATGCTATATGTTGTA
1 AATGAATGCTATATGTTGTA
38811 AA
1 AA
38813 ATGATCGGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 3 0.15
22 13 0.65
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (20 bp):
AATGAATGCTATATGTTGTA
Found at i:41634 original size:56 final size:56
Alignment explanation
Indices: 41540--41707 Score: 264
Period size: 56 Copynumber: 3.0 Consensus size: 56
41530 TCTAACATGT
* * * * *
41540 AATCACATATCGATGCCAATGTACTAGACGTGGCCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACATATATCGA
* *
41596 AATCACATATCGATGCCAATGTATTAAACATGGTCTTACTTGCACACATATATCAA
1 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACATATATCGA
*
41652 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACATATATCGA
1 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACATATATCGA
41708 TGCCATGGTC
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 102 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (56 bp):
AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACATATATCGA
Found at i:41913 original size:16 final size:16
Alignment explanation
Indices: 41892--41924 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
41882 ATTCAATTCG
41892 TCATTTATAATATACA
1 TCATTTATAATATACA
41908 TCATTTATAATATACA
1 TCATTTATAATATACA
41924 T
1 T
41925 AAATTGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (16 bp):
TCATTTATAATATACA
Found at i:42298 original size:28 final size:31
Alignment explanation
Indices: 42246--42302 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
42236 TCCCTACACT
42246 TTATTTATTTCACATTTTAGTCCCTCAATTTA
1 TTATTTATTTCACATTTTAGTCCCT-AATTTA
42278 TTATTT-TTTCA-A-TTTAG-CCCTAATT
1 TTATTTATTTCACATTTTAGTCCCTAATT
42303 ACTCAAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 4 0.16
28 4 0.16
29 5 0.20
30 1 0.04
31 5 0.20
32 6 0.24
ACGTcount: A:0.25, C:0.18, G:0.04, T:0.54
Consensus pattern (31 bp):
TTATTTATTTCACATTTTAGTCCCTAATTTA
Found at i:51582 original size:10 final size:10
Alignment explanation
Indices: 51567--51591 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
51557 CTTTAATATC
51567 ACATACTTAT
1 ACATACTTAT
51577 ACATACTTAT
1 ACATACTTAT
51587 ACATA
1 ACATA
51592 ACATGTGGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.36
Consensus pattern (10 bp):
ACATACTTAT
Found at i:51914 original size:56 final size:56
Alignment explanation
Indices: 51847--51957 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
51837 TCTTACATGT
*
51847 AATCACATATCGATGCCAACATACTAGACGTGGTCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAACATACTAAACGTGGTCTTACTCGCACACATATATCGG
*
51903 AATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATATATCG
1 AATCACATATCGATGCCAACATACTAAACGTGGTCTTACTCGCACACATATATCG
51958 ATGCCATGGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (56 bp):
AATCACATATCGATGCCAACATACTAAACGTGGTCTTACTCGCACACATATATCGG
Found at i:59249 original size:46 final size:46
Alignment explanation
Indices: 59197--59378 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
59187 AGTGTGCTCT
* *
59197 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
59243 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
59289 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
59335 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
59379 TCATGTTAAA
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 122 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:81771 original size:20 final size:19
Alignment explanation
Indices: 81748--81807 Score: 83
Period size: 20 Copynumber: 3.3 Consensus size: 19
81738 TAAACATGGT
81748 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
81767 CATGTATGATATGCACATG-
1 -ATGTATGATATGCACATGA
81786 A--TATGATATGCACATG-
1 ATGTATGATATGCACATGA
81802 ATGTAT
1 ATGTAT
81808 TCATAAATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
16 16 0.42
18 4 0.11
20 18 0.47
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (19 bp):
ATGTATGATATGCACATGA
Found at i:81792 original size:16 final size:16
Alignment explanation
Indices: 81752--81803 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
81742 CATGGTATGT
*
81752 ATGATATGCACATG-AC
1 ATGATATG-ATATGCAC
81768 ATG-TATGATATGCAC
1 ATGATATGATATGCAC
81783 ATGATATGATATGCAC
1 ATGATATGATATGCAC
81799 ATGAT
1 ATGAT
81804 GTATTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
14 4 0.12
15 9 0.27
16 20 0.61
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (16 bp):
ATGATATGATATGCAC
Found at i:81880 original size:24 final size:24
Alignment explanation
Indices: 81853--82019 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
81843 GAGGAAGTGC
81853 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
81877 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
81901 AAAAGGG-TTATGCTCTAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
81924 AACAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
81948 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
81972 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
81996 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
82020 ATGATAAAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
23 19 0.15
24 97 0.76
25 11 0.09
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:83207 original size:13 final size:13
Alignment explanation
Indices: 83189--83216 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
83179 ATAAGCAAAA
83189 ATATGGTAATGAT
1 ATATGGTAATGAT
83202 ATATGGTAATGAT
1 ATATGGTAATGAT
83215 AT
1 AT
83217 GATGCTATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (13 bp):
ATATGGTAATGAT
Done.