genome.fa.s373.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_400
Parameters: 2 7 7 80 10 50 1000
Length:  78897

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4233--4295	30	2.1	29	94	2	108	33	25	17	23	1.96
6929--6973	21	2.1	21	92	8	74	4	0	53	42	1.21
29567--29614	19	2.6	18	93	3	78	64	2	0	33	1.05
29781--29857	18	4.3	18	72	6	57	28	10	16	44	1.81
29781--29857	27	2.9	27	75	7	75	28	10	16	44	1.81
31850--31936	43	2.0	43	100	0	174	24	20	13	41	1.89
38955--39174	48	4.6	48	80	0	233	22	28	21	27	1.99
38951--39182	96	2.4	96	86	0	311	21	28	21	28	1.98
38954--39268	144	2.2	143	79	5	332	22	28	20	27	1.99
39003--39268	96	2.8	96	79	3	257	22	28	20	28	1.98
38954--39268	48	6.6	48	78	5	226	22	28	20	27	1.99
41159--41205	22	2.1	22	100	0	94	42	8	17	31	1.79
43298--43333	18	2.1	17	89	5	54	33	13	16	36	1.89
53833--54152	46	6.8	48	76	9	268	27	19	30	22	1.98
57567--57591	11	2.3	11	100	0	50	56	8	0	36	1.29
57569--57618	15	3.2	16	76	20	52	52	14	0	34	1.42
57596--57642	24	2.0	24	84	16	62	51	17	0	31	1.46
58298--58367	11	6.2	11	74	12	61	2	18	2	75	1.05
58412--58463	13	4.0	13	76	16	54	42	1	0	55	1.10
60399--60442	22	2.0	22	81	0	52	56	2	0	40	1.11
64383--64553	46	3.7	45	80	6	182	24	27	18	29	1.98
64382--64553	94	1.8	92	84	7	231	24	27	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66372--66459	34	2.6	34	82	12	94	56	4	4	34	1.40
66751--66786	15	2.3	16	90	4	56	55	0	11	33	1.35
67691--67736	25	1.9	23	86	8	65	73	2	17	6	1.14
68328--68415	37	2.4	37	100	0	176	29	14	22	32	1.94
69014--69198	40	4.7	40	80	6	198	23	21	27	27	1.99
69051--69231	79	2.3	78	77	9	179	26	18	26	28	1.98
75763--75809	23	2.0	24	87	4	69	72	2	17	8	1.19
76399--76484	37	2.4	36	96	3	156	29	13	23	33	1.93
77080--77263	39	4.6	39	81	6	194	23	22	28	25	1.99
77135--77286	78	1.9	78	83	9	193	25	20	28	25	1.99

Tables:   1

The End!