Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_38
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 389546
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 2 of 2
Found at i:231223 original size:12 final size:12
Alignment explanation
Indices: 231202--231334 Score: 59
Period size: 12 Copynumber: 10.6 Consensus size: 12
231192 AGAAAAGGAG
*
231202 AAAGAGATTGAA
1 AAAGAAATTGAA
231214 AAAGAAATTGAAAGA
1 AAAGAAATTG--A-A
* **
231229 AAACAAAAAGAA
1 AAAGAAATTGAA
*
231241 AAAGAAATTGCA
1 AAAGAAATTGAA
**
231253 AAAGAAAAAGAA
1 AAAGAAATTGAA
** **
231265 ATCGAAAAAGAA
1 AAAGAAATTGAA
*
231277 AAAGAAATCGAA
1 AAAGAAATTGAA
** **
231289 AAAGTGAGAGAA
1 AAAGAAATTGAA
*
231301 AAAGAAAATGAAGA
1 AAAGAAATTG-A-A
231315 AAAGAAAATTGAA
1 AAAG-AAATTGAA
231328 AAAGAAA
1 AAAGAAA
231335 AAGCGAAAAA
Statistics
Matches: 89, Mismatches: 26, Indels: 12
0.70 0.20 0.09
Matches are distributed among these distances:
12 62 0.70
13 7 0.08
14 7 0.08
15 13 0.15
ACGTcount: A:0.69, C:0.03, G:0.19, T:0.09
Consensus pattern (12 bp):
AAAGAAATTGAA
Found at i:231278 original size:5 final size:6
Alignment explanation
Indices: 231224--231337 Score: 77
Period size: 6 Copynumber: 18.7 Consensus size: 6
231214 AAAGAAATTG
* ** * **
231224 AAAG-A AAACAA AAAGAA AAAGAA ATTGCA AAAGAA AAAGAA ATCGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * *
231271 AAAGAA AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA
*
231321 AATTGAA AAAGAA AAAG
1 AA-AGAA AAAGAA AAAG
231338 CGAAAAAAGA
Statistics
Matches: 79, Mismatches: 26, Indels: 7
0.71 0.23 0.06
Matches are distributed among these distances:
5 3 0.04
6 65 0.82
7 7 0.09
8 4 0.05
ACGTcount: A:0.71, C:0.04, G:0.18, T:0.07
Consensus pattern (6 bp):
AAAGAA
Found at i:231301 original size:18 final size:18
Alignment explanation
Indices: 231224--231292 Score: 104
Period size: 18 Copynumber: 3.9 Consensus size: 18
231214 AAAGAAATTG
*
231224 AAAGAAAAC-AAAAAGAA
1 AAAGAAATCGAAAAAGAA
* *
231241 AAAGAAATTGCAAAAGAA
1 AAAGAAATCGAAAAAGAA
231259 AAAGAAATCGAAAAAGAA
1 AAAGAAATCGAAAAAGAA
231277 AAAGAAATCGAAAAAG
1 AAAGAAATCGAAAAAG
231293 TGAGAGAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
17 7 0.15
18 39 0.85
ACGTcount: A:0.72, C:0.06, G:0.16, T:0.06
Consensus pattern (18 bp):
AAAGAAATCGAAAAAGAA
Found at i:231319 original size:14 final size:13
Alignment explanation
Indices: 231298--231335 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
231288 AAAAGTGAGA
231298 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
231310 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
231325 GAAAAAGAAAA
1 GAAAAAGAAAA
231336 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:231349 original size:21 final size:21
Alignment explanation
Indices: 231299--231349 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
231289 AAAGTGAGAG
*
231299 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
231320 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
231341 AAAAAGAAA
1 AAAAAGAAA
231350 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:231389 original size:33 final size:33
Alignment explanation
Indices: 231352--231414 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
231342 AAAAGAAATT
231352 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTGT-AAAAGAAA-CAAGTGAAAAA
*
231385 GAAAGAGAGTCTGTAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTGTAAAAGAAACAAGTGAA
231415 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.27, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTGTAAAAGAAACAAGTGAAAAA
Found at i:233215 original size:20 final size:20
Alignment explanation
Indices: 233192--233245 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
233182 AGTTTTACCC
*
233192 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
233212 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
233232 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
233246 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:233227 original size:30 final size:30
Alignment explanation
Indices: 233192--233265 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
233182 AGTTTTACCC
233192 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
233222 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
233252 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
233266 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:233255 original size:20 final size:20
Alignment explanation
Indices: 233192--233256 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
233182 AGTTTTACCC
* * * *
233192 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
233212 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
233231 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
233252 AGCTC
1 AGCTC
233257 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:248050 original size:21 final size:21
Alignment explanation
Indices: 248024--248086 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
248014 TTGGTATTTG
248024 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
248045 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
248066 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
248087 ACGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:268053 original size:24 final size:25
Alignment explanation
Indices: 268000--268053 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
267990 AATGGCCGAT
*
268000 GTGATGAATGTGAAAGTGTATATGT
1 GTGATGAATGTGAAAGTGTATATGC
* **
268025 TTGATGAATGTG-ACTTGTATATGC
1 GTGATGAATGTGAAAGTGTATATGC
268049 GTGAT
1 GTGAT
268054 AAGGCCTAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.28, C:0.04, G:0.30, T:0.39
Consensus pattern (25 bp):
GTGATGAATGTGAAAGTGTATATGC
Found at i:268100 original size:47 final size:47
Alignment explanation
Indices: 268026--268385 Score: 533
Period size: 47 Copynumber: 7.7 Consensus size: 47
268016 TGTATATGTT
** ** *
268026 TGATGAATGTG-ACTTGTATATGCGTGATAAGGCCTAATAGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
*
268072 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
*
268119 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* *
268166 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
*
268213 TGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
*
268260 TGATGAATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* * * * * *
268307 TGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* * *
268354 TGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
268386 TCCCGAAGGG
Statistics
Matches: 287, Mismatches: 26, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
46 11 0.04
47 276 0.96
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:268560 original size:37 final size:37
Alignment explanation
Indices: 268504--268582 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
268494 CCGAGCTCTA
* *
268504 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
268541 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
268578 AAGAC
1 AAGAC
268583 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:273139 original size:11 final size:11
Alignment explanation
Indices: 273123--273163 Score: 82
Period size: 11 Copynumber: 3.7 Consensus size: 11
273113 CTTCAAAATT
273123 TTTTTTTTGAA
1 TTTTTTTTGAA
273134 TTTTTTTTGAA
1 TTTTTTTTGAA
273145 TTTTTTTTGAA
1 TTTTTTTTGAA
273156 TTTTTTTT
1 TTTTTTTT
273164 TCAAATTTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:277010 original size:40 final size:40
Alignment explanation
Indices: 276966--277116 Score: 248
Period size: 40 Copynumber: 3.8 Consensus size: 40
276956 GAGTTACTAA
*
276966 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
277006 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
277046 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
277086 ATCCGTGCTAAATCTCGAAGAGCAATCATGC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGC
277117 AGGTGACGTG
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:277024 original size:80 final size:80
Alignment explanation
Indices: 276887--277116 Score: 243
Period size: 80 Copynumber: 2.9 Consensus size: 80
276877 TCGAATGATG
** * * *
276887 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGCGA-TATATCCGGGCTAAG-TCCCGAAGAGC
** *
276948 ATTGGTGCGAGTTACTAAA
63 ATTCATGCGAGTGA-TAAA
*
276967 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
* **
277032 CATGCTAGTGATGTA
66 CATGCGAGTGATAAA
* * * * *
277047 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGTGCTAAATCTCGAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
277112 CATGC
66 CATGC
277117 AGGTGACGTG
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 103 0.80
81 18 0.14
82 6 0.05
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
CATGCGAGTGATAAA
Found at i:277105 original size:120 final size:120
Alignment explanation
Indices: 276887--277116 Score: 270
Period size: 120 Copynumber: 1.9 Consensus size: 120
276877 TCGAATGATG
** *
276887 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
* * * *
276952 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
66 ATGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTA
** *
277007 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGC
1 TCCGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
* * * *
277069 ATTCATGCTAGTGA-TATATCCGTGCTAAATCTCGAAGAGCAATCATGC
62 ATTCATGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGC
277117 AGGTGACGTG
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
119 1 0.01
120 66 0.72
121 19 0.21
122 6 0.07
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
ATGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTA
Found at i:280699 original size:25 final size:25
Alignment explanation
Indices: 280670--280717 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
280660 ATGGCCGATG
280670 TGATGAATGTGAAAGTGTATATGTT
1 TGATGAATGTGAAAGTGTATATGTT
280695 TGATGAATGTGAAAGTGTATATG
1 TGATGAATGTGAAAGTGTATATG
280718 CGTGATAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38
Consensus pattern (25 bp):
TGATGAATGTGAAAGTGTATATGTT
Found at i:280723 original size:25 final size:25
Alignment explanation
Indices: 280669--280723 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
280659 AATGGCCGAT
*
280669 GTGATGAATGTGAAAGTGTATATGT
1 GTGATGAATGTGAAAGTGTATATGC
*
280694 TTGATGAATGTGAAAGTGTATATGC
1 GTGATGAATGTGAAAGTGTATATGC
280719 GTGAT
1 GTGAT
280724 AAGGCCTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.02, G:0.31, T:0.36
Consensus pattern (25 bp):
GTGATGAATGTGAAAGTGTATATGC
Found at i:280749 original size:47 final size:47
Alignment explanation
Indices: 280695--281055 Score: 551
Period size: 47 Copynumber: 7.7 Consensus size: 47
280685 TGTATATGTT
**
280695 TGATGAATGTGAAAGTGTATATGCGTGATAAGGCCTAATAGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
* *
280742 TGATGAATTTGAAAGTGTATATATGTGATAACGCCTAATAGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
*
280789 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
*
280836 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
* *
280883 TGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
*
280930 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
* * * * * * *
280977 TGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
* * *
281024 TGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
281056 TTCCGAAGGG
Statistics
Matches: 290, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 290 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
Found at i:281230 original size:37 final size:37
Alignment explanation
Indices: 281174--281252 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
281164 CCGAGCTCTA
* * *
281174 AAGACCCGATGACTACGTGTGG-GAATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
281211 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
281248 AAGAC
1 AAGAC
281253 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:289081 original size:22 final size:22
Alignment explanation
Indices: 289053--289096 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
289043 TTTTGAACCA
289053 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
289075 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
289097 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:297124 original size:29 final size:29
Alignment explanation
Indices: 297081--297172 Score: 141
Period size: 29 Copynumber: 3.2 Consensus size: 29
297071 GCATGTGTAA
*
297081 GAATGTGATTGGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
297110 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
* *
297139 GAATGAGA-TTGGGCCTAGTGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
*
297167 GCATGT
1 GAATGT
297173 ATGTAGACTT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
28 23 0.40
29 35 0.60
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.28
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAT
Found at i:325854 original size:5 final size:5
Alignment explanation
Indices: 325844--325868 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
325834 TTTAACAAAG
325844 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
325869 GTTCCAATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:326852 original size:18 final size:18
Alignment explanation
Indices: 326829--326865 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
326819 TGAAGAGAGG
*
326829 AAAATGAGAGGGAAGTGA
1 AAAATGAGAGAGAAGTGA
326847 AAAATGAGAGAGAAGTGA
1 AAAATGAGAGAGAAGTGA
326865 A
1 A
326866 GAGATGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.35, T:0.11
Consensus pattern (18 bp):
AAAATGAGAGAGAAGTGA
Found at i:333091 original size:18 final size:17
Alignment explanation
Indices: 333007--333092 Score: 50
Period size: 18 Copynumber: 4.6 Consensus size: 17
332997 GTGAGGAAAA
*
333007 AGAAAAAGAGAATGAAG
1 AGAAAAAGAAAATGAAG
333024 ACGAGCAAAA-AAAGATTGAGAG
1 A-GA--AAAAGAAA-A-TGA-AG
*
333046 GGAAAAAGAAAATGAAG
1 AGAAAAAGAAAATGAAG
*
333063 A-AAGAAGAGAAAATGAATT
1 AGAA-AA-AGAAAATGAA-G
333082 AGAAAAAGAAA
1 AGAAAAAGAAA
333093 CAAATGAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 21
0.68 0.05 0.27
Matches are distributed among these distances:
16 2 0.04
17 5 0.09
18 20 0.37
19 10 0.19
20 10 0.19
21 5 0.09
22 2 0.04
ACGTcount: A:0.64, C:0.02, G:0.26, T:0.08
Consensus pattern (17 bp):
AGAAAAAGAAAATGAAG
Found at i:346402 original size:20 final size:21
Alignment explanation
Indices: 346377--346418 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
346367 TGGAATGGTT
346377 AATTTAA-TCAATTTAGCTTG
1 AATTTAATTCAATTTAGCTTG
* *
346397 AATTTAATTCATTTTAGGTTG
1 AATTTAATTCAATTTAGCTTG
346418 A
1 A
346419 TTGCATTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (21 bp):
AATTTAATTCAATTTAGCTTG
Found at i:351278 original size:16 final size:15
Alignment explanation
Indices: 351245--351274 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
351235 GAAAGAGTTA
351245 CTTGCTATTGTGTTT
1 CTTGCTATTGTGTTT
351260 CTTGCTATTGTGTTT
1 CTTGCTATTGTGTTT
351275 TCTTTTGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.20, T:0.60
Consensus pattern (15 bp):
CTTGCTATTGTGTTT
Found at i:357782 original size:17 final size:18
Alignment explanation
Indices: 357760--357800 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
357750 CGTTTCTTTT
357760 TCTTTTGAATCACTC-TC
1 TCTTTTGAATCACTCATC
**
357777 TCTTTTTTATCACTCATC
1 TCTTTTGAATCACTCATC
357795 T-TTTTG
1 TCTTTTG
357801 TTTTTCTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.15, C:0.24, G:0.05, T:0.56
Consensus pattern (18 bp):
TCTTTTGAATCACTCATC
Found at i:360065 original size:15 final size:15
Alignment explanation
Indices: 360047--360075 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
360037 CTAGACCGTA
360047 TGCAATTTTTTTTTT
1 TGCAATTTTTTTTTT
360062 TGCAATTTTTTTTT
1 TGCAATTTTTTTTT
360076 CCTTCTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (15 bp):
TGCAATTTTTTTTTT
Found at i:362121 original size:19 final size:19
Alignment explanation
Indices: 362097--362135 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
362087 TATGTTTGGC
362097 ACATAGTTTGCGTATAGAG
1 ACATAGTTTGCGTATAGAG
362116 ACATAGTTTGCGTATAGAG
1 ACATAGTTTGCGTATAGAG
362135 A
1 A
362136 TAGCTTCGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (19 bp):
ACATAGTTTGCGTATAGAG
Found at i:362190 original size:40 final size:41
Alignment explanation
Indices: 362135--362294 Score: 155
Period size: 41 Copynumber: 3.9 Consensus size: 41
362125 GCGTATAGAG
** * *
362135 ATAGCTTCGGCTATATAAAGCGCTTAGTGTGCG-GATCAAA
1 ATAGCTTCAACTATATAAGGCACTTAGTGTGCGAGATCAAA
* * * *
362175 ATAGCTTCAGCTATATATGGCACTTAGTGTGTGAGA-CTAAG
1 ATAGCTTCAACTATATAAGGCACTTAGTGTGCGAGATC-AAA
* *
362216 ATAGCTTCAACTATGA-AAGGCACTTAGTGTGCGAGATTATA
1 ATAGCTTCAACTAT-ATAAGGCACTTAGTGTGCGAGATCAAA
* * *
362257 ATAGCTTCAACTATGTTATGGCACTTAGTGTGTGAGAT
1 ATAGCTTCAACTAT-ATAAGGCACTTAGTGTGCGAGAT
362295 ATAGAGTATT
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 29 0.29
41 51 0.51
42 20 0.20
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (41 bp):
ATAGCTTCAACTATATAAGGCACTTAGTGTGCGAGATCAAA
Found at i:362294 original size:42 final size:40
Alignment explanation
Indices: 362157--362294 Score: 161
Period size: 41 Copynumber: 3.4 Consensus size: 40
362147 ATATAAAGCG
* * *
362157 CTTAGTGTGCG-GATCAAAATAGCTTCAGCTATATATGGCA
1 CTTAGTGTGCGAGAT-TAAATAGCTTCAACTATGTATGGCA
* * * *
362197 CTTAGTGTGTGAGACTAAGATAGCTTCAACTATGAAAGGCA
1 CTTAGTGTGCGAGATTAA-ATAGCTTCAACTATGTATGGCA
362238 CTTAGTGTGCGAGATTATAATAGCTTCAACTATGTTATGGCA
1 CTTAGTGTGCGAGATTA-AATAGCTTCAACTATG-TATGGCA
*
362280 CTTAGTGTGTGAGAT
1 CTTAGTGTGCGAGAT
362295 ATAGAGTATT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
40 12 0.15
41 50 0.61
42 20 0.24
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (40 bp):
CTTAGTGTGCGAGATTAAATAGCTTCAACTATGTATGGCA
Found at i:368006 original size:4 final size:4
Alignment explanation
Indices: 367997--368024 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
367987 AAGTTTTATT
367997 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
368025 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:373179 original size:43 final size:43
Alignment explanation
Indices: 373031--373202 Score: 183
Period size: 43 Copynumber: 4.0 Consensus size: 43
373021 TAGTATTTTT
*
373031 GATATGTGATTTCATGTAAGACCACGTCTAGGG-CGTTGGCATC
1 GATATTTGATTTCATGTAAGACCACGTCT-GGGACGTTGGCATC
* * * * * *
373074 GAT-TTGAGATTTCGTGTAAGACCATGTCTGGGACATCGGCACC
1 GATATT-TGATTTCATGTAAGACCACGTCTGGGACGTTGGCATC
*
373117 G-TATTTGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATC
1 GATATTTGATTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCATC
* *
373159 GATATTTGATTGCATGTAAGACCACGTCTGAGACGTTGGCATC
1 GATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCATC
373202 G
1 G
373203 TACGAGCTTT
Statistics
Matches: 106, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
42 37 0.35
43 68 0.64
44 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
GATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:382037 original size:79 final size:80
Alignment explanation
Indices: 381926--382091 Score: 212
Period size: 79 Copynumber: 2.1 Consensus size: 80
381916 GCTACTCGTT
** *
381926 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCA
1 CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCATTC-GGATCTTAACCCA
381990 GATTTAGTAACTCGCA
65 GATTTAGTAACTCGCA
* * ** *
382006 CAAATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCACAAATGCATTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCATTCGGATCTTAACCCA
*
382069 GATTTAGTATCTCGCA
65 GATTTAGTAACTCGCA
382085 CAAATGC
1 CAAATGC
382092 ATGATTTTGA
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 4 0.05
79 57 0.76
80 14 0.19
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCATTCGGATCTTAACCCAG
ATTTAGTAACTCGCA
Found at i:382092 original size:40 final size:39
Alignment explanation
Indices: 381926--382093 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 39
381916 GCTACTCGTT
* *
381926 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCATTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
381966 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCATTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
382006 CAAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCATTCGGACTTAGCCCGGATTTAGTAACTCGCA
* *
382045 CAAATGCATTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCATTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
382085 CAAATGCAT
1 CAAATGCAT
382094 GATTTTGATT
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 34 0.30
40 76 0.68
41 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAATGCATTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:386013 original size:27 final size:27
Alignment explanation
Indices: 385970--386023 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
385960 GTGACAGAAT
385970 CAGAATCAGAATCAGTAACAGAATCAG
1 CAGAATCAGAATCAGTAACAGAATCAG
* *
385997 CAGAATCAGTATTAGTAACAGAATCAG
1 CAGAATCAGAATCAGTAACAGAATCAG
386024 AATCAGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.19
Consensus pattern (27 bp):
CAGAATCAGAATCAGTAACAGAATCAG
Found at i:386039 original size:6 final size:6
Alignment explanation
Indices: 385925--386038 Score: 80
Period size: 6 Copynumber: 19.3 Consensus size: 6
385915 AAGAAACGTT
* * *
385925 ATCAGA A-CTAGA ATCAGA ATCAAA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
385974 ATCAGA ATCAGTA A-CAGA ATCAG- --CAGA ATCAGT ATTAGTA A-CAGA
1 ATCAGA ATCAG-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG-A ATCAGA
*
386019 ATCAGA ATCAGA ATTAGA AT
1 ATCAGA ATCAGA ATCAGA AT
386039 TTCGTGACAG
Statistics
Matches: 85, Mismatches: 11, Indels: 24
0.71 0.09 0.20
Matches are distributed among these distances:
3 3 0.04
5 6 0.07
6 69 0.81
7 6 0.07
8 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:386229 original size:27 final size:26
Alignment explanation
Indices: 386181--386254 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
386171 AGCATGACTG
* * * *
386181 CCAGAACAAATATCGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
386207 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
386234 CCAGAATCAGATAATGTGGCA
1 CCAGAA-CAGATATTGTGGCA
386255 AACCCACCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.15
27 35 0.85
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:386261 original size:27 final size:27
Alignment explanation
Indices: 386205--386262 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
386195 GTGACAGAGT
* * *
386205 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
386232 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
386259 CACC
1 CACC
386263 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:386644 original size:27 final size:26
Alignment explanation
Indices: 386565--386647 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
386555 TCGATCGGTC
* * *
386565 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
386591 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
386618 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
386645 AAC
1 AAC
386648 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:386878 original size:27 final size:27
Alignment explanation
Indices: 386848--387041 Score: 208
Period size: 27 Copynumber: 7.2 Consensus size: 27
386838 GGCAAAATGA
* * *
386848 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * *
386875 TAATTCTACCTTACAGGGGTAGTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* *
386902 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGG
* *
386929 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * *
386956 TAATTCTATCCTATAAGGGTATTTCAG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * **
386983 TAATTCTACCCTATAGGGGTATTTTAG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * *
387010 AAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAAGGGTATTTCGG
387037 TAATT
1 TAATT
387042 TCACAATCAA
Statistics
Matches: 140, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGG
Found at i:386990 original size:81 final size:82
Alignment explanation
Indices: 386846--387041 Score: 238
Period size: 81 Copynumber: 2.4 Consensus size: 82
386836 GGGGCAAAAT
* * * * * *
386846 GATAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGGGTAGTTCGGTATTTCTAC
1 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTAGTTCAGTAATTCTAC
*
386911 CCTACAAGGGTA-TTTC
66 CCTACAAGGGTATTTTA
* *
386927 GATAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATA-A-GGGTATTTCAGTAATTCT
1 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTA-CCT-TACAGGGGTAGTTCAGTAATTCT
* *
386990 ACCCTATAGGGGTATTTTA
64 ACCCTACAAGGGTATTTTA
*
387009 GA-AATTCTACCCTACAGGGGTATTTCAGTAATT
1 GATAATTCTACCCTACAGGGGTATTTCGGTAATT
387042 TCACAATCAA
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
81 88 0.89
82 9 0.09
83 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (82 bp):
GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTAGTTCAGTAATTCTAC
CCTACAAGGGTATTTTA
Found at i:387076 original size:27 final size:27
Alignment explanation
Indices: 387046--387616 Score: 672
Period size: 27 Copynumber: 21.2 Consensus size: 27
387036 GTAATTTCAC
* *
387046 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
387073 AATCGAGGGTGAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
387100 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
387127 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
387154 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
387181 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
387208 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
387235 AGTCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
387262 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
387289 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
387316 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
387343 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
387370 AA-CTGAGGGTAGAACGGTAATTCTGTAA
1 AATC-GAGGGTAAAACGGTAATTCTGT-A
* **
387398 AAT-GAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
387424 AATCGAGGGTAAAACGGTAATTGTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
387451 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
387478 AA-CGGAAGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
387505 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
387532 AATCGAGAGTAAAACGATAATT-T-TAA
1 AATCGAGGGTAAAACGGTAATTCTGT-A
*
387558 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
387585 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
387612 AATCG
1 AATCG
387617 GGAGTACTTT
Statistics
Matches: 475, Mismatches: 56, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
25 1 0.00
26 31 0.07
27 436 0.92
28 7 0.01
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Done.