Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 102 of 255
Found at i:31870314 original size:51 final size:50
Alignment explanation
Indices: 31870250--31870495 Score: 259
Period size: 51 Copynumber: 4.9 Consensus size: 50
31870240 TTAAGTTGCA
31870250 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATG-CTTCGATCACG
31870301 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATG-CTTCGATCACG
* * * * ** * *
31870352 TGTGTAGTACTAAGTGTAGGCTACTACGTGTA-TCAGATGGTGAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-ATGCTTCGATCACG
* * * * * *
31870402 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATTG-TT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC--AATGCTTCGATCACG
*
31870451 TGTGTAGTACTAAGTGCAGACTACTATGCGTA-TCAGATAGCTTCG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-AT-GCTTCG
31870496 GCTATAAGTG
Statistics
Matches: 168, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 35 0.21
50 44 0.26
51 86 0.51
52 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGCTTCGATCACG
Found at i:31870507 original size:152 final size:151
Alignment explanation
Indices: 31870199--31870482 Score: 353
Period size: 152 Copynumber: 1.9 Consensus size: 151
31870189 GTGAGTACAC
* * * *
31870199 GTGTGTAGTACTCAGTGCAGGCTACTACGTGTACCATACTGTTAAGTTGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGGTAAGGTGCATGTGTAGTACTAAG
* * *
31870264 TGCAGGCTACTATGCGTACTCAATGACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTATG
66 TGCAGGCTACTACGCGTACTCAATGA-TTCGATCACATGTGTAGTACTAAGTGCAGACTACTATG
*
31870329 CGTACTCAATGACTTCGATCAC
130 CGTACTCAATGACTTCGATCAA
* * *
31870351 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGA-TGGTGAGGT-CATGTGTGTAGTACTA
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGGTAAGGTGCA--TGTGTAGTACTA
* * * *
31870414 AGTGCAGGCTACTACGTGTAC-CGGATTG-TT-GGTCGCATGTGTAGTACTAAGTGCAGACTACT
64 AGTGCAGGCTACTACGCGTACTC--AATGATTCGATCACATGTGTAGTACTAAGTGCAGACTACT
31870476 ATGCGTA
127 ATGCGTA
31870483 TCAGATAGCT
Statistics
Matches: 114, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
150 37 0.32
151 9 0.08
152 65 0.57
153 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (151 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGGTAAGGTGCATGTGTAGTACTAAG
TGCAGGCTACTACGCGTACTCAATGATTCGATCACATGTGTAGTACTAAGTGCAGACTACTATGC
GTACTCAATGACTTCGATCAA
Found at i:31873240 original size:56 final size:55
Alignment explanation
Indices: 31873124--31873241 Score: 159
Period size: 55 Copynumber: 2.1 Consensus size: 55
31873114 TCCATGCTTT
* * * *
31873124 CATT-AATGCCGTCCATGCATGGTGAATATCTCATTTAATTCATGTTTTGCTTCC
1 CATTAAATGCCGTCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCA
*
31873178 CTTTAAATGCCGATCCATACATGG-GAACATCTCATTTAATTCATGTCTTTGCTGCA
1 CATTAAATGCCG-TCCATACATGGTGAACATCTCATTTAATTCATGT-TTTGCTGCA
31873234 CATTAAAT
1 CATTAAAT
31873242 CAGCAAGCAG
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
54 3 0.05
55 28 0.51
56 24 0.44
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (55 bp):
CATTAAATGCCGTCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCA
Found at i:31873891 original size:20 final size:20
Alignment explanation
Indices: 31873866--31873920 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
31873856 ACGAGTTAAA
* *
31873866 TTGAGCTTGAATGAGCTGAC
1 TTGAGCTCGAATGAGCTAAC
*
31873886 TTGAGCACGAATGAGCTAAC
1 TTGAGCTCGAATGAGCTAAC
31873906 TTGAGCTCGAATGAG
1 TTGAGCTCGAATGAG
31873921 TTGAACCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (20 bp):
TTGAGCTCGAATGAGCTAAC
Found at i:31874835 original size:16 final size:15
Alignment explanation
Indices: 31874809--31874838 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
31874799 TTTCAATCCA
31874809 TCATCCCAATCAAAG
1 TCATCCCAATCAAAG
31874824 TCATCACCAATCAAA
1 TCATC-CCAATCAAA
31874839 AATTGATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.33, G:0.03, T:0.20
Consensus pattern (15 bp):
TCATCCCAATCAAAG
Found at i:31876382 original size:12 final size:13
Alignment explanation
Indices: 31876367--31876402 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
31876357 TGAATACAAA
31876367 AATTTTTTTTT-G
1 AATTTTTTTTTCG
31876379 AATTTTTTTTTTCG
1 AA-TTTTTTTTTCG
31876393 AATTTTTTTT
1 AATTTTTTTT
31876403 CCTTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 2 0.09
13 17 0.77
14 3 0.14
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.75
Consensus pattern (13 bp):
AATTTTTTTTTCG
Found at i:31876386 original size:14 final size:14
Alignment explanation
Indices: 31876369--31876402 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
31876359 AATACAAAAA
31876369 TTTTTTTTT-GAAT
1 TTTTTTTTTCGAAT
31876382 TTTTTTTTTCGAAT
1 TTTTTTTTTCGAAT
31876396 TTTTTTT
1 TTTTTTT
31876403 CCTTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.12, C:0.03, G:0.06, T:0.79
Consensus pattern (14 bp):
TTTTTTTTTCGAAT
Found at i:31877575 original size:56 final size:56
Alignment explanation
Indices: 31877470--31877576 Score: 144
Period size: 56 Copynumber: 1.9 Consensus size: 56
31877460 ATTAATGCCG
* * * * * *
31877470 TCCATGCATGGTGAATATCTTATTTAATTCATGTTTTGCTTCCCTTTAAATGTCGT
1 TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGTCGT
31877526 TCCATACATGG-GAACATCTCATTTAATTCATGTTTTTGCTGCACATTAAAT
1 TCCATACATGGTGAACATCTCATTTAATTCATG-TTTTGCTGCACATTAAAT
31877577 CAACAAGCAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
55 19 0.43
56 25 0.57
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.43
Consensus pattern (56 bp):
TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGTCGT
Found at i:31878231 original size:20 final size:20
Alignment explanation
Indices: 31878208--31878254 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
31878198 AATTGAGCTT
*
31878208 GAATGAGCTGACTTGACCAC
1 GAATGAGCTAACTTGACCAC
* *
31878228 GAATGAGCTAACTTGAGCTC
1 GAATGAGCTAACTTGACCAC
31878248 GAATGAG
1 GAATGAG
31878255 TTGAACCACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (20 bp):
GAATGAGCTAACTTGACCAC
Found at i:31878530 original size:51 final size:51
Alignment explanation
Indices: 31878423--31878550 Score: 125
Period size: 51 Copynumber: 2.5 Consensus size: 51
31878413 TACGTACCCA
* *
31878423 ATAGCTTCGATCACATGTGTGGTACTAAGTGCAGACCACTATGTGTAAAAG
1 ATAGCTTCGATCACAAGTGTGGTACTAAGTGAAGACCACTATGTGTAAAAG
* * * * * *
31878474 ATAGCTTGGGTCACAAGTGTGGTACTATGTGAAGGCTACTTTGTG-AATAAG
1 ATAGCTTCGATCACAAGTGTGGTACTAAGTGAAGACCACTATGTGTAA-AAG
* * *
31878525 GTAGCTTTGA-CTACAAGGGTGGTACT
1 ATAGCTTCGATC-ACAAGTGTGGTACT
31878551 TTGTGCAGGC
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
50 3 0.05
51 60 0.95
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (51 bp):
ATAGCTTCGATCACAAGTGTGGTACTAAGTGAAGACCACTATGTGTAAAAG
Found at i:31885030 original size:34 final size:34
Alignment explanation
Indices: 31884987--31885089 Score: 125
Period size: 34 Copynumber: 2.9 Consensus size: 34
31884977 ATTTAATTAA
31884987 ACTCATTTTAGTTAATTGAGTTGCTGGAATAAAT
1 ACTCATTTTAGTTAATTGAGTTGCTGGAATAAAT
* *
31885021 ACTCATTTTAGTTATTAATTGAGTTACTAGAATAAAT
1 ACTCATTTTAG---TTAATTGAGTTGCTGGAATAAAT
* * * *
31885058 GCTTATCTTAGTTAATTTAGTTGCTGGAATAA
1 ACTCATTTTAGTTAATTGAGTTGCTGGAATAA
31885090 TGTATTGTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
34 29 0.50
37 29 0.50
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.43
Consensus pattern (34 bp):
ACTCATTTTAGTTAATTGAGTTGCTGGAATAAAT
Found at i:31885054 original size:37 final size:37
Alignment explanation
Indices: 31884987--31885071 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
31884977 ATTTAATTAA
* *
31884987 ACTCATTTTAG---TTAATTGAGTTGCTGGAATAAAT
1 ACTCATTTTAGTTATTAATTGAGTTACTAGAATAAAT
31885021 ACTCATTTTAGTTATTAATTGAGTTACTAGAATAAAT
1 ACTCATTTTAGTTATTAATTGAGTTACTAGAATAAAT
* * *
31885058 GCTTATCTTAGTTA
1 ACTCATTTTAGTTA
31885072 ATTTAGTTGC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
34 11 0.26
37 32 0.74
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (37 bp):
ACTCATTTTAGTTATTAATTGAGTTACTAGAATAAAT
Found at i:31885146 original size:9 final size:9
Alignment explanation
Indices: 31885134--31885174 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
31885124 AGTTAATTAA
31885134 GTTTAATGT
1 GTTTAATGT
*
31885143 GTTTAAAGT
1 GTTTAATGT
*
31885152 GTTTAATTT
1 GTTTAATGT
31885161 GTTTTAATGT
1 G-TTTAATGT
31885171 GTTT
1 GTTT
31885175 GTTAATGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.22, C:0.00, G:0.20, T:0.59
Consensus pattern (9 bp):
GTTTAATGT
Found at i:31885157 original size:18 final size:19
Alignment explanation
Indices: 31885134--31885174 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
31885124 AGTTAATTAA
31885134 GTTTAATGTG-TTTAAAGT
1 GTTTAATGTGTTTTAAAGT
* *
31885152 GTTTAATTTGTTTTAATGT
1 GTTTAATGTGTTTTAAAGT
31885171 GTTT
1 GTTT
31885175 GTTAATGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.22, C:0.00, G:0.20, T:0.59
Consensus pattern (19 bp):
GTTTAATGTGTTTTAAAGT
Found at i:31889179 original size:37 final size:34
Alignment explanation
Indices: 31889118--31889220 Score: 134
Period size: 34 Copynumber: 2.9 Consensus size: 34
31889108 TTTTAATTAA
31889118 ACTCATTTTAGTTAATTAAGTTGCTGGAATAAAT
1 ACTCATTTTAGTTAATTAAGTTGCTGGAATAAAT
* *
31889152 ACTCATTTTAGTTATTAATTGAGTTGCTAGAATAAAT
1 ACTCATTTTAG---TTAATTAAGTTGCTGGAATAAAT
* * *
31889189 ACTTATCTTAGTTAATTTAGTTGCTGGAATAA
1 ACTCATTTTAGTTAATTAAGTTGCTGGAATAA
31889221 TTTATTGTTA
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
34 30 0.50
37 30 0.50
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.43
Consensus pattern (34 bp):
ACTCATTTTAGTTAATTAAGTTGCTGGAATAAAT
Found at i:31889277 original size:9 final size:9
Alignment explanation
Indices: 31889265--31889323 Score: 82
Period size: 9 Copynumber: 6.4 Consensus size: 9
31889255 AGTTAATTAA
31889265 GTTTAATGT
1 GTTTAATGT
31889274 GTTTAATGT
1 GTTTAATGT
31889283 GTTTAATGT
1 GTTTAATGT
* *
31889292 GCTTAAAGT
1 GTTTAATGT
*
31889301 GTTTAATTT
1 GTTTAATGT
31889310 GTTTTAATGT
1 G-TTTAATGT
31889320 GTTT
1 GTTT
31889324 GTTAATGAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
9 35 0.81
10 8 0.19
ACGTcount: A:0.22, C:0.02, G:0.20, T:0.56
Consensus pattern (9 bp):
GTTTAATGT
Found at i:31893859 original size:93 final size:93
Alignment explanation
Indices: 31893746--31893917 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
31893736 CGCCCATAAG
***
31893746 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
31893811 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
31893839 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
31893904 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
31893918 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:31893914 original size:46 final size:46
Alignment explanation
Indices: 31893739--31893914 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
31893729 TGTAACCCGC
* ***
31893739 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
31893785 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
31893835 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
31893878 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
31893915 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:31898218 original size:30 final size:28
Alignment explanation
Indices: 31898165--31898220 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
31898155 TTCTTCCACG
* *
31898165 CTTTCTTTTTGCTCACTCTCTTTTTCAA
1 CTTTCTTTTTGCACACACTCTTTTTCAA
31898193 CTTTACTTTCTTGCACACACTCTTTTTC
1 CTTT-CTTT-TTGCACACACTCTTTTTC
31898221 TTTTCGCTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.12, C:0.30, G:0.04, T:0.54
Consensus pattern (28 bp):
CTTTCTTTTTGCACACACTCTTTTTCAA
Found at i:31901553 original size:47 final size:47
Alignment explanation
Indices: 31901490--31902009 Score: 803
Period size: 47 Copynumber: 11.1 Consensus size: 47
31901480 GAAATGATAG
*
31901490 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
31901537 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
31901584 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
31901631 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
31901678 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
31901725 TAAGGCCTAATAGCCTATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
31901772 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAG-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GTGTGA
* * *
31901819 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
31901866 TACGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
31901913 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * * * * * * **
31901958 TCAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 T-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
31902006 TAAG
1 TAAG
31902010 TCCCGAGGGC
Statistics
Matches: 445, Mismatches: 23, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
45 1 0.00
46 39 0.09
47 403 0.91
48 2 0.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:31902183 original size:37 final size:37
Alignment explanation
Indices: 31902127--31902205 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
31902117 CCGAGCTCTA
* * *
31902127 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
31902164 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
31902201 AAGAC
1 AAGAC
31902206 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:31903628 original size:14 final size:14
Alignment explanation
Indices: 31903602--31903643 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
31903592 TATGTTCAAA
31903602 TTTTCAG-ATTTTT
1 TTTTCAGAATTTTT
31903615 TTTTCAGAATTTTT
1 TTTTCAGAATTTTT
* *
31903629 GTTTGA-AATTTTT
1 TTTTCAGAATTTTT
31903642 TT
1 TT
31903644 CGTTTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.19, C:0.05, G:0.10, T:0.67
Consensus pattern (14 bp):
TTTTCAGAATTTTT
Found at i:31907914 original size:23 final size:22
Alignment explanation
Indices: 31907863--31907914 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
31907853 CCTCATCTTT
*
31907863 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
31907885 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
31907908 TTCTTTT
1 TTCTTTT
31907915 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:31912689 original size:41 final size:42
Alignment explanation
Indices: 31912536--31912690 Score: 147
Period size: 42 Copynumber: 3.7 Consensus size: 42
31912526 ATGTGTTATT
* * *
31912536 GTGTAAGACCATGTTTGGGACATTGGCATCAAT-TTGTGATTTAT
1 GTGTAAGACCA-GTCTGGGACATTGGCATCGATATT-TGA-TTAC
* *
31912580 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTC
1 GTGTAAGACCA-GTCTGGGACATTGGCATCGATATTTGATTAC
* * *
31912622 GTGTAAGACCTA-TTTAGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACC-AGTCTGGGACATTGGCATCGATATTTGATTAC
* *
31912664 ATGTAAGACCA-TCTGGGACGTTGGCAT
1 GTGTAAGACCAGTCTGGGACATTGGCAT
31912691 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
41 28 0.30
42 30 0.32
43 5 0.05
44 30 0.32
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (42 bp):
GTGTAAGACCAGTCTGGGACATTGGCATCGATATTTGATTAC
Found at i:31918935 original size:36 final size:36
Alignment explanation
Indices: 31918888--31918960 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
31918878 AACATCAAAA
31918888 AATCATCATACCACAATATGCTCATAACAATTTCAT
1 AATCATCATACCACAATATGCTCATAACAATTTCAT
31918924 AATCATCATACCACAATATGCTCATAACAATTTCAT
1 AATCATCATACCACAATATGCTCATAACAATTTCAT
31918960 A
1 A
31918961 GCTTGTTCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.42, C:0.25, G:0.03, T:0.30
Consensus pattern (36 bp):
AATCATCATACCACAATATGCTCATAACAATTTCAT
Found at i:31930608 original size:48 final size:48
Alignment explanation
Indices: 31930554--31930822 Score: 248
Period size: 48 Copynumber: 5.7 Consensus size: 48
31930544 GTAAATTGCT
* *
31930554 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-A-CATGTCGAGCCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGT-G-G-CC
* *
31930602 GATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCC
* * * * * ** *
31930650 GTTGCCATGTCCTAGACATGGTCTTACACTAGCGCACTTAACAAT-GCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAA-TGTGGCC
* * ** *
31930698 GATGCCATGTCCCGGATATGGTCTTACACTA-CTCTCATAACATTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCC
* * * *
31930745 GATGCCATGTTCCAAACATGGTCTT--ACTGGCTCTCATATTGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCC
*
31930791 GACGCCATGT-CCAGACATGGTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
31930823 ACACATATCA
Statistics
Matches: 178, Mismatches: 35, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
45 16 0.09
46 23 0.13
47 34 0.19
48 96 0.54
49 3 0.02
50 2 0.01
51 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCC
Found at i:31941945 original size:40 final size:40
Alignment explanation
Indices: 31941773--31941938 Score: 273
Period size: 40 Copynumber: 4.2 Consensus size: 40
31941763 AACCCAAGTA
* *
31941773 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
31941812 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
31941852 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
31941892 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
31941932 CCTTCGG
1 CCTTCGG
31941939 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.11
40 105 0.88
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:31949956 original size:79 final size:78
Alignment explanation
Indices: 31949819--31949970 Score: 268
Period size: 79 Copynumber: 1.9 Consensus size: 78
31949809 CCTTCGGGAT
*
31949819 TTAGCCGGATATAGCAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACA
1 TTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACA
31949884 AATGCCTTGGCAC
66 AATGCCTTGGCAC
* *
31949897 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC
1 TTAG-CCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAC
31949962 AAATGCCTT
65 AAATGCCTT
31949971 CGGATCTTAG
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
78 4 0.06
79 66 0.94
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (78 bp):
TTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACA
AATGCCTTGGCAC
Found at i:31949980 original size:40 final size:40
Alignment explanation
Indices: 31949809--31949973 Score: 255
Period size: 40 Copynumber: 4.2 Consensus size: 40
31949799 AACCCAAGTA
* *
31949809 CCTTCGGGATTTAG-CCGGATATAG-CAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
31949848 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
31949888 CCTT-GGCACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
31949927 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
31949967 CCTTCGG
1 CCTTCGG
31949974 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 49 0.43
40 65 0.57
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:31954446 original size:27 final size:27
Alignment explanation
Indices: 31954416--31954593 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
31954406 ATATTGAGTC
* * * *
31954416 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
31954443 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31954470 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
31954498 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
31954525 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
31954552 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31954579 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
31954594 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:31954555 original size:82 final size:81
Alignment explanation
Indices: 31954437--31954592 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
31954427 TGCTATATAA
* *
31954437 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
31954502 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
31954519 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
31954583 CACTTAGTGC
65 CACTTAGTGC
31954593 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:31961240 original size:47 final size:47
Alignment explanation
Indices: 31961123--31961240 Score: 200
Period size: 47 Copynumber: 2.5 Consensus size: 47
31961113 CGAATGTCTG
* * *
31961123 AGCTCGTTGAGTTGAGTCTAAGTTTGTGAGATGTAACTAGGCATCCG
1 AGCTCATTGAGTTGAGTCTGAGTTTGTGAGATGTAACTAGGCATCCA
31961170 AGCTCATTGAGTTGAGTCTGAGTTTGTGAGATGTAACTAGGCATCCA
1 AGCTCATTGAGTTGAGTCTGAGTTTGTGAGATGTAACTAGGCATCCA
*
31961217 AGCTCATTGAGTTGAGTCCGAGTT
1 AGCTCATTGAGTTGAGTCTGAGTT
31961241 CGCTTATGGG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (47 bp):
AGCTCATTGAGTTGAGTCTGAGTTTGTGAGATGTAACTAGGCATCCA
Found at i:31965122 original size:64 final size:63
Alignment explanation
Indices: 31965042--31965223 Score: 183
Period size: 64 Copynumber: 2.9 Consensus size: 63
31965032 AGACATTATG
*
31965042 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * *
31965105 TATGTAGCTAGGTCGCATGTG-GCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGTGATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
31965168 TA
62 TA
* * * * *
31965170 ATTTGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
31965224 CGAACTCTAT
Statistics
Matches: 96, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
62 3 0.03
63 21 0.22
64 38 0.40
65 32 0.33
66 1 0.01
67 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:31982282 original size:31 final size:31
Alignment explanation
Indices: 31982247--31982306 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
31982237 ATTTGGAGAC
31982247 ACCATTTGTATGGTAAGACATGCCGTGTATT
1 ACCATTTGTATGGTAAGACATGCCGTGTATT
*
31982278 ACCATTTGTATGGTGAGACATGCCGTGTA
1 ACCATTTGTATGGTAAGACATGCCGTGTA
31982307 ATCACCAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (31 bp):
ACCATTTGTATGGTAAGACATGCCGTGTATT
Found at i:31993326 original size:40 final size:40
Alignment explanation
Indices: 31993270--31993447 Score: 222
Period size: 40 Copynumber: 4.5 Consensus size: 40
31993260 CGGATGATAA
31993270 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
31993310 CCGGGCTAAG-CTCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCTAGTGACTAATT
* * * *
31993350 CCAGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-T
* *
31993390 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA-CTAAT-T
*
31993430 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
31993448 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
39 19 0.15
40 107 0.84
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
Found at i:32001324 original size:40 final size:39
Alignment explanation
Indices: 32001267--32001484 Score: 246
Period size: 40 Copynumber: 5.5 Consensus size: 39
32001257 CGGATGATAA
*
32001267 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTGACTATA-T
*
32001307 CCGGGCTAAGCCTCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGCC-CGAAGGCATTTGTGCGAGTGACTATA-T
* *
32001347 TCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTGACTATAT
* *
32001387 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTGACTATAT
* *
32001427 CCGGGCTAAGTTCCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTGA-CTATAT
*
32001467 CC-GGCTAAATCCCGAAGG
1 CCGGGCT-AAGCCCGAAGG
32001485 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
39 14 0.09
40 145 0.90
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:32001404 original size:80 final size:80
Alignment explanation
Indices: 32001263--32001484 Score: 283
Period size: 80 Copynumber: 2.8 Consensus size: 80
32001253 TATTCGGATG
* *
32001263 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCTCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC-CGAAGG
*
32001326 CATTTGTGCTAGTGACT
64 CATTTGTGCGAGTGACT
** *
32001343 A-ATTTCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
*
32001407 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTGACT
* * *
32001423 ATAACCGGGCTAAGTTCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
32001485 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
79 18 0.15
80 102 0.82
81 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTGACT
Found at i:32014456 original size:24 final size:25
Alignment explanation
Indices: 32014429--32014475 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
32014419 AATGACCCAA
*
32014429 ATTTTGAAAAATAAT-CAATTCAAC
1 ATTTTGAAAAAAAATCCAATTCAAC
32014453 ATTTTGAAAAAAAATCCAATTCA
1 ATTTTGAAAAAAAATCCAATTCA
32014476 TTAATTTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (25 bp):
ATTTTGAAAAAAAATCCAATTCAAC
Found at i:32015360 original size:21 final size:21
Alignment explanation
Indices: 32015334--32015374 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32015324 CTTGCAAAGA
*
32015334 AAAAAAAATTCTTCTCGTCGG
1 AAAAAAAATTCCTCTCGTCGG
*
32015355 AAAAAAATTTCCTCTCGTCG
1 AAAAAAAATTCCTCTCGTCG
32015375 AATTAGATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (21 bp):
AAAAAAAATTCCTCTCGTCGG
Found at i:32016174 original size:13 final size:13
Alignment explanation
Indices: 32016156--32016180 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32016146 TCAAAGAAAC
32016156 ATTGTTGTCAAAA
1 ATTGTTGTCAAAA
32016169 ATTGTTGTCAAA
1 ATTGTTGTCAAA
32016181 CGGTCAAAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (13 bp):
ATTGTTGTCAAAA
Found at i:32023586 original size:17 final size:17
Alignment explanation
Indices: 32023564--32023688 Score: 70
Period size: 17 Copynumber: 7.5 Consensus size: 17
32023554 TATCAAGATA
*
32023564 AATATTAGATTAAATTT
1 AATATTAAATTAAATTT
32023581 AATATTAAATTAAA-TT
1 AATATTAAATTAAATTT
32023597 AA-ATT-AA-TAGAATATT
1 AATATTAAATTA-AAT-TT
* * * *
32023613 TATA-TACA--AGA-TA
1 AATATTAAATTAAATTT
*
32023626 AAAATTAAATTAAATTT
1 AATATTAAATTAAATTT
*
32023643 AATAATAAGA-TAATCACTTT
1 AATATTAA-ATTAA--A-TTT
32023663 AATATTAAATTAAATTT
1 AATATTAAATTAAATTT
32023680 AATATTAAA
1 AATATTAAA
32023689 CCTATTAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 28
0.66 0.11 0.23
Matches are distributed among these distances:
13 5 0.06
14 7 0.09
15 4 0.05
16 11 0.14
17 37 0.46
18 2 0.02
19 2 0.02
20 13 0.16
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.40
Consensus pattern (17 bp):
AATATTAAATTAAATTT
Found at i:32027362 original size:9 final size:9
Alignment explanation
Indices: 32027346--32027379 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
32027336 TTTATTAACA
32027346 AATTAATTT
1 AATTAATTT
*
32027355 AGTTAATTT
1 AATTAATTT
*
32027364 AAATAATTT
1 AATTAATTT
32027373 AATTAAT
1 AATTAAT
32027380 ACATTAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (9 bp):
AATTAATTT
Found at i:32028686 original size:13 final size:13
Alignment explanation
Indices: 32028670--32028694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32028660 CAAGAATTGC
32028670 ACACAAGTGCCAT
1 ACACAAGTGCCAT
32028683 ACACAAGTGCCA
1 ACACAAGTGCCA
32028695 ACTATATTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.16, T:0.12
Consensus pattern (13 bp):
ACACAAGTGCCAT
Found at i:32030150 original size:28 final size:29
Alignment explanation
Indices: 32030101--32030156 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
32030091 TATAGGGGTT
32030101 TTCACACAGCCAAGCACACGCCTGTGTCC
1 TTCACACAGCCAAGCACACGCCTGTGTCC
* *
32030130 TTCACACGGCCTAG-ACACGCCTGTGTC
1 TTCACACAGCCAAGCACACGCCTGTGTC
32030157 TAAAAACTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.52
29 12 0.48
ACGTcount: A:0.21, C:0.39, G:0.20, T:0.20
Consensus pattern (29 bp):
TTCACACAGCCAAGCACACGCCTGTGTCC
Found at i:32031749 original size:13 final size:13
Alignment explanation
Indices: 32031731--32031755 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32031721 GTATTGATCA
32031731 TGTGTTCACACCT
1 TGTGTTCACACCT
32031744 TGTGTTCACACC
1 TGTGTTCACACC
32031756 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:32033748 original size:16 final size:16
Alignment explanation
Indices: 32033727--32033758 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32033717 ACATTACCCA
32033727 AGCCTAGCCGAATGTT
1 AGCCTAGCCGAATGTT
32033743 AGCCTAGCCGAATGTT
1 AGCCTAGCCGAATGTT
32033759 CTTTCCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (16 bp):
AGCCTAGCCGAATGTT
Found at i:32041774 original size:49 final size:49
Alignment explanation
Indices: 32041700--32041902 Score: 220
Period size: 49 Copynumber: 4.2 Consensus size: 49
32041690 TATGTGTCAA
** * *
32041700 TGTAAGACCTGCCTGGGACACGGCATCGAGACAGATAAGTGAGAGCCAG
1 TGTAAGACCTATCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAG
* *
32041749 TGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAA
1 TGTAAGACCTATCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAG
* * *
32041798 TGTAAGACCTATCTGGGACATGGCATC-AGC-CTTGATGTACGT-A-AGTCAG
1 TGTAAGACCTATCTGGGACATGGCATCGA-CAC-AGA--TAAGTGAGAGCCAG
** *
32041847 TGTAAGACCTATCTGGGACATGGCATCGACTTAGAT--GTAAGAGCCAG
1 TGTAAGACCTATCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAG
32041894 TGTAAGACC
1 TGTAAGACC
32041903 ATGTTTGAAA
Statistics
Matches: 134, Mismatches: 12, Indels: 18
0.82 0.07 0.11
Matches are distributed among these distances:
45 2 0.01
46 1 0.01
47 15 0.11
48 2 0.01
49 108 0.81
50 2 0.01
51 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.29, T:0.21
Consensus pattern (49 bp):
TGTAAGACCTATCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAG
Found at i:32054128 original size:24 final size:24
Alignment explanation
Indices: 32054096--32054146 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
32054086 ATAGGCTATG
*
32054096 ACAGGTGCACGAGCCTCGGGTCTA
1 ACAGGTGCACGAGCCTCGAGTCTA
*
32054120 ACAGGTGCATGAGCCTCGAGTCTA
1 ACAGGTGCACGAGCCTCGAGTCTA
32054144 ACA
1 ACA
32054147 ATTGTATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.29, T:0.18
Consensus pattern (24 bp):
ACAGGTGCACGAGCCTCGAGTCTA
Found at i:32059334 original size:142 final size:142
Alignment explanation
Indices: 32059073--32059348 Score: 353
Period size: 142 Copynumber: 1.9 Consensus size: 142
32059063 TGGGTGATAT
* * **
32059073 GTGTGTCAGTGTAATACCTGTCTGGGACATGGCATCGACACAGCTAAGTGCGAGCCAGTGTAAGA
1 GTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTAAGAGCCAGTGTAAGA
* * **
32059138 CTAGTCTAGAACATGGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGGTCTGTCTGGAACATGG
66 CTAGTCTAGAACATGACATCGACCTCAAGATATGCAAGCTAGTGTAAGACCTGTCTGGAACATGG
32059203 CATCGGCTTAAG
131 CATCGGCTTAAG
* * *
32059215 GTGTGTTAGTGTAAGACCTGTTTGGGACATGGCATTGACACAGATAAGTAAGAGCCCA-TGTAAG
1 GTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTAAGAG-CCAGTGTAAG
* * * *
32059279 ACCT-GTCTAGGACATGACATCGACCTCGATG-TATGTAAG-TCAGTGTAAGACCTGTCTGGGAC
65 A-CTAGTCTAGAACATGACATCGACCTC-AAGATATGCAAGCT-AGTGTAAGACCTGTCTGGAAC
32059341 ATGGCATC
127 ATGGCATC
32059349 AACTTAGATG
Statistics
Matches: 115, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
141 1 0.01
142 107 0.93
143 7 0.06
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (142 bp):
GTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTAAGAGCCAGTGTAAGA
CTAGTCTAGAACATGACATCGACCTCAAGATATGCAAGCTAGTGTAAGACCTGTCTGGAACATGG
CATCGGCTTAAG
Found at i:32066457 original size:41 final size:41
Alignment explanation
Indices: 32066410--32066529 Score: 118
Period size: 41 Copynumber: 3.2 Consensus size: 41
32066400 CATCTTCTTT
32066410 TTTTTCATTCTTCTTCCCATTTCCTTCCAACCTTCTCTCTC
1 TTTTTCATTCTTCTTCCCATTTCCTTCCAACCTTCTCTCTC
* * * *
32066451 TTTTTCA---TTC-TCACA--T-C-T-AAAGCATCT-TCT-
1 TTTTTCATTCTTCTTCCCATTTCCTTCCAACCTTCTCTCTC
*
32066481 TTTTTCATTCTTCTTCCCATTTCCTTCCAACCTTCTCCCTC
1 TTTTTCATTCTTCTTCCCATTTCCTTCCAACCTTCTCTCTC
32066522 TTTTTCAT
1 TTTTTCAT
32066530 GCTTTTATCC
Statistics
Matches: 59, Mismatches: 9, Indels: 22
0.66 0.10 0.24
Matches are distributed among these distances:
30 7 0.12
31 3 0.05
32 6 0.10
33 4 0.07
34 5 0.08
35 1 0.02
36 1 0.02
37 5 0.08
38 4 0.07
39 6 0.10
40 2 0.03
41 15 0.25
ACGTcount: A:0.13, C:0.35, G:0.01, T:0.51
Consensus pattern (41 bp):
TTTTTCATTCTTCTTCCCATTTCCTTCCAACCTTCTCTCTC
Found at i:32066517 original size:71 final size:72
Alignment explanation
Indices: 32066367--32066529 Score: 265
Period size: 71 Copynumber: 2.3 Consensus size: 72
32066357 TCAACTTTAC
* ** *
32066367 CCTTCTCCCTCTTTTTTATTCTCATGTCTGAAGCATCTTCTTTTTTTTCATTCTTCTTCCCATTT
1 CCTTCTCCCTCTTTTTCATTCTCACATCTAAAGCATCTTC-TTTTTTTCATTCTTCTTCCCATTT
32066432 CCTTCCAA
65 CCTTCCAA
*
32066440 CCTTCTCTCTCTTTTTCATTCTCACATCTAAAGCATCTTC-TTTTTTCATTCTTCTTCCCATTTC
1 CCTTCTCCCTCTTTTTCATTCTCACATCTAAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTTC
32066504 CTTCCAA
66 CTTCCAA
32066511 CCTTCTCCCTCTTTTTCAT
1 CCTTCTCCCTCTTTTTCAT
32066530 GCTTTTATCC
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
71 49 0.58
73 35 0.42
ACGTcount: A:0.13, C:0.34, G:0.02, T:0.51
Consensus pattern (72 bp):
CCTTCTCCCTCTTTTTCATTCTCACATCTAAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTTC
CTTCCAA
Found at i:32069649 original size:33 final size:33
Alignment explanation
Indices: 32069609--32069672 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
32069599 AACTCTTGTT
32069609 TCCATCATGGATGTTTGAACTTGATCAAATTGG
1 TCCATCATGGATGTTTGAACTTGATCAAATTGG
* *
32069642 TCCATCATGGATGTTTGGATTTGATCAAATT
1 TCCATCATGGATGTTTGAACTTGATCAAATT
32069673 CGTTGGTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (33 bp):
TCCATCATGGATGTTTGAACTTGATCAAATTGG
Found at i:32070155 original size:16 final size:16
Alignment explanation
Indices: 32070136--32070167 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32070126 TATAAAAATG
32070136 TTATTAAATTATATTT
1 TTATTAAATTATATTT
32070152 TTATTAAATTATATTT
1 TTATTAAATTATATTT
32070168 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTAAATTATATTT
Found at i:32070166 original size:26 final size:26
Alignment explanation
Indices: 32070119--32070200 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 26
32070109 AATTCATATA
* *
32070119 ATAATTATATAAAAATGTTATTAAATT
1 ATAATTATATTAAAAT-ATATTAAATT
* * * * *
32070146 ATATTTTTATTAAATTATATTTAATA
1 ATAATTATATTAAAATATATTAAATT
*
32070172 ATAATTATATTAAAATATGGTTAAATT
1 ATAATTATATTAAAATAT-ATTAAATT
32070199 AT
1 AT
32070201 TAAATTATTT
Statistics
Matches: 41, Mismatches: 13, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
26 22 0.54
27 19 0.46
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.49
Consensus pattern (26 bp):
ATAATTATATTAAAATATATTAAATT
Found at i:32070387 original size:16 final size:16
Alignment explanation
Indices: 32070366--32070420 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
32070356 TGAATTACTG
*
32070366 ATTACAACTCTGTTCA
1 ATTACAACTCTATTCA
* *
32070382 ATTACAGCCCTATTCA
1 ATTACAACTCTATTCA
* *
32070398 AATACAACTCTATTCC
1 ATTACAACTCTATTCA
32070414 ATTACAA
1 ATTACAA
32070421 TAAACCAAAC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.33
Consensus pattern (16 bp):
ATTACAACTCTATTCA
Found at i:32072459 original size:40 final size:40
Alignment explanation
Indices: 32072375--32072558 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
32072365 TTGAATGCTG
* * * *
32072375 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
32072414 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
32072455 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
32072495 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
32072535 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32072559 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:32072512 original size:80 final size:81
Alignment explanation
Indices: 32072375--32072555 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
32072365 TTGAATGCTG
* *
32072375 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
32072439 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
32072455 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
32072516 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
32072535 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
32072556 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:32084670 original size:40 final size:39
Alignment explanation
Indices: 32084611--32084877 Score: 342
Period size: 40 Copynumber: 6.8 Consensus size: 39
32084601 CATTTGAATG
* * *
32084611 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGA-T
*
32084651 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGAT
**
32084691 ATATCCGGGCTAAGACCC-AAGGCATTTGT--GAGTTCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAT
* * * *
32084727 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAT
*
32084766 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGAT
*
32084806 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGAT
* * *
32084846 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
32084878 TTGTGGTTAT
Statistics
Matches: 199, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
36 18 0.09
37 13 0.07
39 45 0.23
40 120 0.60
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAT
Found at i:32092911 original size:40 final size:40
Alignment explanation
Indices: 32092853--32093140 Score: 265
Period size: 40 Copynumber: 7.3 Consensus size: 40
32092843 ATTTGAATGA
* *
32092853 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
32092893 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* *
32092933 TATCC-GGCTAAGA-CCGAAGGCATTTGT--AAGAG-TTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
32092968 CTATACCCGGGTTAAGACCCGAAGGCAATTGTG-TAGTGATTT
1 -TAT--CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
32093010 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * **
32093050 TATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGT--TGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* * * * *
32093088 TATACTCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TAT-C-CGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
32093130 TATCC-GGCTAA
1 TATCCGGGCTAA
32093141 ATTCTAAAGA
Statistics
Matches: 206, Mismatches: 26, Indels: 33
0.78 0.10 0.12
Matches are distributed among these distances:
35 2 0.01
36 5 0.02
38 19 0.09
39 47 0.23
40 113 0.55
41 13 0.06
42 7 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:32095905 original size:21 final size:21
Alignment explanation
Indices: 32095881--32095920 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
32095871 ATGCTGGAAT
32095881 TGTATCCGGGCTTAAAGACCC
1 TGTATCCGGGCTTAAAGACCC
32095902 TGTATCCGGGCTTAAAGAC
1 TGTATCCGGGCTTAAAGAC
32095921 TCGCAGGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (21 bp):
TGTATCCGGGCTTAAAGACCC
Found at i:32095915 original size:61 final size:61
Alignment explanation
Indices: 32095841--32095962 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 61
32095831 TATTTGGAAT
*
32095841 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCTTAAAGACCC
1 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCATAAAGACCC
*
32095902 TGTATCCGGGCTTAAAGACTCGCAGGCTATATGCTGGAATTGTATCCGGGCATAAAGACCC
1 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCATAAAGACCC
32095963 GCAGGCTTCG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (61 bp):
TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCATAAAGACCC
Found at i:32095958 original size:40 final size:40
Alignment explanation
Indices: 32095902--32096002 Score: 134
Period size: 40 Copynumber: 2.5 Consensus size: 40
32095892 TTAAAGACCC
32095902 TGTATCCGGGCTTAAAGACTCGCAGGCTAT-ATGCTGGAAT
1 TGTATCCGGGCTTAAAGACTCGCAGGCT-TCATGCTGGAAT
* * *
32095942 TGTATCCGGGCATAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACTCGCAGGCTTCATGCTGGAAT
* *
32095982 GGTATCTGGG-TTAAAGACTCG
1 TGTATCCGGGCTTAAAGACTCG
32096003 TAAGCTTGCG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
39 10 0.19
40 43 0.81
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
TGTATCCGGGCTTAAAGACTCGCAGGCTTCATGCTGGAAT
Found at i:32098031 original size:63 final size:62
Alignment explanation
Indices: 32097885--32098035 Score: 218
Period size: 61 Copynumber: 2.5 Consensus size: 62
32097875 TGTCATAAAA
* *
32097885 AGGATTTAGCCT-GGACTGGTAATCTTGACTAATCTCTATTGAGTATATATATATTAGAGAC
1 AGGATTTAGCCTAGGACTGGTAATCCTGACTAAGCTCTATTGAGTATATATATATTAGAGAC
* *
32097946 AAGATTTAGCCTA-GACTGGTAATCCTGACTAAGCTCTATTGAGTATATATATATATTGGAGAC
1 AGGATTTAGCCTAGGACTGGTAATCCTGACTAAGCTCTATTGAG--TATATATATATTAGAGAC
*
32098009 AGGATTTAG-CTAGGACTAGTAATCCTG
1 AGGATTTAGCCTAGGACTGGTAATCCTG
32098036 TTGTATATAT
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
61 39 0.49
62 3 0.04
63 38 0.47
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.34
Consensus pattern (62 bp):
AGGATTTAGCCTAGGACTGGTAATCCTGACTAAGCTCTATTGAGTATATATATATTAGAGAC
Found at i:32102750 original size:30 final size:30
Alignment explanation
Indices: 32102692--32102752 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
32102682 CTCCCGAGCC
* *
32102692 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
* *
32102722 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
32102752 T
1 T
32102753 GCATTAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATACAAAAGTT
Found at i:32105192 original size:49 final size:48
Alignment explanation
Indices: 32105135--32105344 Score: 193
Period size: 49 Copynumber: 4.5 Consensus size: 48
32105125 AGTTAATGCT
*
32105135 ATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGATACC
1 ATGTCCCAGACAGGTCTTACACTGACTCTCATA-ATCGAGGCCGATACC
* * * * *
32105184 ATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCG-GTGTCGATGCC
1 ATGTCCCAGACAGGTCTTACACTGACTCTCAT-AATCGAG-GCCGATACC
* * * * *
32105233 ATGTCCCAGAC-GGTCTTACACTGA--CACA-AGTC-AAGTCGATGCC
1 ATGTCCCAGACAGGTCTTACACTGACTCTCATAATCGAGGCCGATACC
* * * *
32105276 ATGTCCCAGACATGTCTTACACTGGCTCTCATAAT-GTGGCCGA-AGC
1 ATGTCCCAGACAGGTCTTACACTGACTCTCATAATCGAGGCCGATACC
*
32105322 ATGTCCCAGACATGTCTTACACT
1 ATGTCCCAGACAGGTCTTACACT
32105345 AGCACACATA
Statistics
Matches: 132, Mismatches: 21, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
43 20 0.15
44 13 0.10
46 30 0.23
47 6 0.05
48 12 0.09
49 51 0.39
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGTCCCAGACAGGTCTTACACTGACTCTCATAATCGAGGCCGATACC
Found at i:32105352 original size:92 final size:92
Alignment explanation
Indices: 32105177--32105344 Score: 227
Period size: 92 Copynumber: 1.8 Consensus size: 92
32105167 ATATCGAGGC
* * * *
32105177 CGATACCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGGTGTCGATGCCATGTCCCAG
1 CGATACCATGTCCCAGACAGGTCTTACACTGGCTCTCATCAATCGGTGCCGAAGCCATGTCCCAG
32105242 ACGGTCTTACACTGACACAAGTCAAGT
66 ACGGTCTTACACTGACACAAGTCAAGT
* *
32105269 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCAT-AAT--GTGGCCGAAG-CATGTCCCA
1 CGATACCATGTCCCAGACAGGTCTTACACTGGCTCTCATCAATCGGT-GCCGAAGCCATGTCCCA
*
32105330 GACATGTCTTACACT
65 GAC-GGTCTTACACT
32105345 AGCACACATA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
89 14 0.21
90 15 0.22
91 2 0.03
92 36 0.54
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (92 bp):
CGATACCATGTCCCAGACAGGTCTTACACTGGCTCTCATCAATCGGTGCCGAAGCCATGTCCCAG
ACGGTCTTACACTGACACAAGTCAAGT
Found at i:32113666 original size:38 final size:38
Alignment explanation
Indices: 32113613--32113755 Score: 160
Period size: 38 Copynumber: 3.5 Consensus size: 38
32113603 GATACACATG
* *
32113613 ACGTGATGCTGAGTGGATATACCACGGTTAAACATATA
1 ACGTGGTGCTAAGTGGATATACCACGGTTAAACATATA
* *
32113651 ACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTA
1 ACGTGGTGCTAAGTGGATATACCACGGTT--A-A-A--CA-T-A-TA
*
32113698 ACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTA
1 ACGTGGTGCTAAGTGGATATACCACGGTTAAACATATA
32113736 ACGTGGTGCTAAGTGGATAT
1 ACGTGGTGCTAAGTGGATAT
32113756 GGCATGGTTA
Statistics
Matches: 89, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
38 48 0.54
40 2 0.02
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 2 0.02
46 1 0.01
47 30 0.34
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (38 bp):
ACGTGGTGCTAAGTGGATATACCACGGTTAAACATATA
Found at i:32113743 original size:85 final size:86
Alignment explanation
Indices: 32113526--32113770 Score: 321
Period size: 86 Copynumber: 2.9 Consensus size: 86
32113516 AGAATGGAAA
* * ** * * *
32113526 AACGTGGTGCTAAGTGGATATAGCATGGTTATTCGTGTAACGTGGTACTAAGTGGATATACCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
*
32113591 ATTACACATATTGATACACAT
66 GTTACACATATTGATACACAT
* * * *
32113612 GACGTGATGCTGAGTGGATATACCACGGTTAAACATATAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
* * *
32113677 GTTACATATATTGATTCA-TT
66 GTTACACATATTGATACACAT
* *
32113697 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGGCATG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
*
32113762 GTTATACAT
66 GTTACACAT
32113771 GTTAATTTGA
Statistics
Matches: 136, Mismatches: 23, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
85 67 0.49
86 69 0.51
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (86 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
GTTACACATATTGATACACAT
Found at i:32120347 original size:43 final size:43
Alignment explanation
Indices: 32120286--32120371 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
32120276 TTAAACACAT
32120286 ACCTGTCAAAATTTCTCATTCACCACACTTACCAATATATCAC
1 ACCTGTCAAAATTTCTCATTCACCACACTTACCAATATATCAC
32120329 ACCTGTCAAAATTTCTCATTCACCACACTTACCAATATATCAC
1 ACCTGTCAAAATTTCTCATTCACCACACTTACCAATATATCAC
32120372 CTTCGTTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.35, C:0.33, G:0.02, T:0.30
Consensus pattern (43 bp):
ACCTGTCAAAATTTCTCATTCACCACACTTACCAATATATCAC
Found at i:32121121 original size:30 final size:30
Alignment explanation
Indices: 32121086--32121145 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32121076 ATTTAATACG
*
32121086 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
32121116 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
32121146 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:32130974 original size:48 final size:48
Alignment explanation
Indices: 32130903--32131036 Score: 191
Period size: 48 Copynumber: 2.8 Consensus size: 48
32130893 CGGTTATATG
32130903 TGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACA
1 TGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACA
* * * *
32130951 TGTAACGTGGTACTAAGTGGATATGCCACCG-TTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCA-CGATTACACATATTGATACA
* *
32130999 T-TAACGTGGTGCTAGGTGGATATACCACGATTAAACAT
1 TGTAACGTGGTGCTAAGTGGATATACCACGATTACACAT
32131037 GTAATGTGGT
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 2 0.03
47 29 0.39
48 42 0.56
49 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (48 bp):
TGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACA
Found at i:32132943 original size:43 final size:43
Alignment explanation
Indices: 32132865--32132949 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
32132855 TCCAAGATAT
** * **
32132865 GGTCTTACATGTTATCACATATTGATGCCTCTGTCCCAGACAG
1 GGTCTTACATGAAATCACATAATGATGCCAATGTCCCAGACAG
*
32132908 GGTCTTACATGAAATCA-ATTAATGATGCCAATGTCCTAGACA
1 GGTCTTACATGAAATCACA-TAATGATGCCAATGTCCCAGACA
32132950 TGGAATCTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
42 1 0.03
43 34 0.97
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (43 bp):
GGTCTTACATGAAATCACATAATGATGCCAATGTCCCAGACAG
Found at i:32140565 original size:43 final size:43
Alignment explanation
Indices: 32140508--32140610 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
32140498 ATGCCTCTAT
* * * *
32140508 CCAGACAGGGTCTTACACGAAATC-GATTAACGATGCCAATGTC
1 CCAGACATGGTCTTACACGAAATCTCAAT-ACAATGCCAATGTC
* * *
32140551 CTAGACATGGTCTTACATGTAATCTCAATACAATGCCAATGTC
1 CCAGACATGGTCTTACACGAAATCTCAATACAATGCCAATGTC
32140594 CCAGACATGGTCTTACA
1 CCAGACATGGTCTTACA
32140611 TGTAATCACA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 49 0.96
44 2 0.04
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
CCAGACATGGTCTTACACGAAATCTCAATACAATGCCAATGTC
Found at i:32145432 original size:43 final size:44
Alignment explanation
Indices: 32145371--32145457 Score: 149
Period size: 43 Copynumber: 2.0 Consensus size: 44
32145361 ATCACATGTA
* *
32145371 TCGCATCCATTATGAACTCGGACC-AGTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
32145414 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
32145458 CTCATACATA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 23 0.56
44 18 0.44
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.20
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
Found at i:32155435 original size:42 final size:43
Alignment explanation
Indices: 32155359--32155501 Score: 132
Period size: 42 Copynumber: 3.4 Consensus size: 43
32155349 CAATGGCATA
* * **
32155359 TCCCAGATATGGTCTTACATGGGATCTCATATCGATGCCAATAG
1 TCCCAGAAATGGTCTTACACGAAATCTCATATCGATGCCAAT-G
* * *
32155403 -CCCATAAATGGTCTTACACG-ATTCTCATATCGATG-CTATG
1 TCCCAGAAATGGTCTTACACGAAATCTCATATCGATGCCAATG
* * * *
32155443 TCCCAGACATGGTCTTACACGAAATCTTATAACGATGCC-ATA
1 TCCCAGAAATGGTCTTACACGAAATCTCATATCGATGCCAATG
* *
32155485 TCCCTGATATGGTCTTA
1 TCCCAGAAATGGTCTTA
32155502 TACATAAACT
Statistics
Matches: 82, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
40 1 0.01
41 21 0.26
42 42 0.51
43 18 0.22
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
TCCCAGAAATGGTCTTACACGAAATCTCATATCGATGCCAATG
Found at i:32155517 original size:42 final size:42
Alignment explanation
Indices: 32155355--32155517 Score: 123
Period size: 42 Copynumber: 3.9 Consensus size: 42
32155345 GTACCAATGG
* * ** * *
32155355 CATATCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CATATCCCAGACATGGTCTTACACGAAAACTCATAACGATGC
* * * ** *
32155397 CAATAGCCCATAAATGGTCTTACACG-ATTCTCATATCGATGC
1 C-ATATCCCAGACATGGTCTTACACGAAAACTCATAACGATGC
* * * *
32155439 TATGTCCCAGACATGGTCTTACACGAAATCTTATAACGATGC
1 CATATCCCAGACATGGTCTTACACGAAAACTCATAACGATGC
* * *
32155481 CATATCCCTGATATGGTCTTATAC-ATAAACTCATAAC
1 CATATCCCAGACATGGTCTTACACGA-AAACTCATAAC
32155518 CCTAATGTCA
Statistics
Matches: 97, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 21 0.22
42 56 0.58
43 20 0.21
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
CATATCCCAGACATGGTCTTACACGAAAACTCATAACGATGC
Found at i:32158046 original size:34 final size:33
Alignment explanation
Indices: 32158002--32158094 Score: 89
Period size: 34 Copynumber: 2.8 Consensus size: 33
32157992 TTTCAGTTAC
* *
32158002 GGCCTTAGCCCATATCAGTAACAGTAGCAGTCTA
1 GGCCTAAGCCCATATCAGTAACAGTAGCAGT-GA
* * * * * *
32158036 GGCCTGAGCCCATTTCAATAATAGTATCAGTGG
1 GGCCTAAGCCCATATCAGTAACAGTAGCAGTGA
32158069 GGCCTAAGCCCATTAT-AGTAACAGTA
1 GGCCTAAGCCCA-TATCAGTAACAGTA
32158095 CAATATGCAA
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
33 19 0.40
34 28 0.60
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.25
Consensus pattern (33 bp):
GGCCTAAGCCCATATCAGTAACAGTAGCAGTGA
Found at i:32172106 original size:13 final size:13
Alignment explanation
Indices: 32172088--32172113 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32172078 ATATTATAAT
32172088 TATTTTATGTTAA
1 TATTTTATGTTAA
32172101 TATTTTATGTTAA
1 TATTTTATGTTAA
32172114 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:32185572 original size:30 final size:30
Alignment explanation
Indices: 32185538--32185638 Score: 84
Period size: 30 Copynumber: 3.2 Consensus size: 30
32185528 AGATAATAAT
32185538 AACATGGCATGCAGTAAATAGTAATAGTCA
1 AACATGGCATGCAGTAAATAGTAATAGTCA
*
32185568 AACAT-GCACT-CAGGTCAACCTTATCAGATAATAAT--
1 AACATGGCA-TGCA-GT-AA----AT-AG-TAATAGTCA
32185603 AACATGGCATGCAGTAAATAGTAATAGTCA
1 AACATGGCATGCAGTAAATAGTAATAGTCA
32185633 AACATG
1 AACATG
32185639 CATTCAGGTC
Statistics
Matches: 56, Mismatches: 2, Indels: 26
0.67 0.02 0.31
Matches are distributed among these distances:
28 6 0.11
29 7 0.12
30 16 0.29
31 2 0.04
34 2 0.04
35 10 0.18
36 7 0.12
37 6 0.11
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.24
Consensus pattern (30 bp):
AACATGGCATGCAGTAAATAGTAATAGTCA
Found at i:32185629 original size:65 final size:65
Alignment explanation
Indices: 32185525--32185655 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
32185515 AGTCCCATGC
32185525 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCACTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCACTCAGGTCAACCTT
*
32185590 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCACTCAGGTCAACCTT
32185655 A
1 A
32185656 ACCCTAGGGA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCACTCAGGTCAACCTT
Found at i:32186722 original size:21 final size:21
Alignment explanation
Indices: 32186698--32186737 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
32186688 TATATTTTAT
32186698 AGCATA-AGTAATAAAATAAAG
1 AGCATAGA-TAATAAAATAAAG
*
32186719 AGCATGGATAATAAAATAA
1 AGCATAGATAATAAAATAA
32186738 TAGTGGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.60, C:0.05, G:0.15, T:0.20
Consensus pattern (21 bp):
AGCATAGATAATAAAATAAAG
Found at i:32187297 original size:40 final size:40
Alignment explanation
Indices: 32187242--32187423 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
32187232 TATTCGAATA
* *
32187242 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
32187282 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
32187322 ATATCTGGGCTATGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
32187362 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
32187402 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32187424 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 14 0.11
40 110 0.87
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:32193979 original size:21 final size:21
Alignment explanation
Indices: 32193955--32193994 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
32193945 TATATTTTAT
32193955 AGCATA-AGTAATAAAATAAAG
1 AGCATAGA-TAATAAAATAAAG
*
32193976 AGCATGGATAATAAAATAA
1 AGCATAGATAATAAAATAA
32193995 TAGTGGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.60, C:0.05, G:0.15, T:0.20
Consensus pattern (21 bp):
AGCATAGATAATAAAATAAAG
Found at i:32194560 original size:40 final size:40
Alignment explanation
Indices: 32194502--32194683 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
32194492 TATTCGAATG
* * *
32194502 ATATCCGGGTTAACTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
32194542 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
32194582 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
32194622 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
32194662 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32194684 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.11
40 112 0.88
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:32199815 original size:37 final size:37
Alignment explanation
Indices: 32199762--32199941 Score: 279
Period size: 37 Copynumber: 4.8 Consensus size: 37
32199752 CGAATAGTCC
* * *
32199762 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
* *
32199799 CCACATGTAGTCATCGGGTCTTACTCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
32199836 CCACACGTAGTCATCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAG---TCATCGGGTCTTACCCGGACATAATCT
*
32199876 CCACACGTAGTCATCGGGTCTTACCCGGACACAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
32199913 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
32199942 ATATATTTCC
Statistics
Matches: 132, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
37 96 0.73
40 36 0.27
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:32199886 original size:77 final size:75
Alignment explanation
Indices: 32199762--32199941 Score: 283
Period size: 77 Copynumber: 2.4 Consensus size: 75
32199752 CGAATAGTCC
* * *
32199762 CCACACGTAGTT-ATCGGGTCTTACCCAGACAAAATCTCCACATGTAGTCATCGGGTCTTACTCG
1 CCACACGTAGTTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
32199826 GACATAATCT
66 GACACAATCT
*
32199836 CCACACGTAGTCATCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CCACACGTAGT--TCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
32199901 CGGACACAATCT
64 CGGACACAATCT
32199913 CCACACGTAG-TCATCGGGTCTTACCCGGA
1 CCACACGTAGTTCATCGGGTCTTACCCGGA
32199942 ATATATTTCC
Statistics
Matches: 98, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
74 30 0.31
76 1 0.01
77 67 0.68
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (75 bp):
CCACACGTAGTTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
GACACAATCT
Found at i:32200168 original size:48 final size:48
Alignment explanation
Indices: 32200111--32200527 Score: 735
Period size: 48 Copynumber: 8.7 Consensus size: 48
32200101 CTAGCCGAAT
* *
32200111 CACTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCG
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
32200159 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
32200207 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
32200255 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
32200303 CACCAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
32200351 CAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
32200399 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
32200447 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
32200495 CATTAGCCATTCGGCTTTACCACACACACATAT
1 CACTAGCCATTCGGCTTTACCACATATACATAT
32200528 ATTTATCTTG
Statistics
Matches: 356, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 356 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:32201558 original size:43 final size:45
Alignment explanation
Indices: 32201510--32201608 Score: 103
Period size: 50 Copynumber: 2.1 Consensus size: 45
32201500 TTACTCAAAC
*
32201510 AATTTACA-T-TGGCCGATCATGTACAATGTTTTGTAGCTTAATA
1 AATTTACATTATGGACGATCATGTACAATGTTTTGTAGCTTAATA
* **
32201553 AATTTAACATACATTATGTATTATCATGTACAATGTTTTGTAGCTTAATA
1 AA-TT----TACATTATGGACGATCATGTACAATGTTTTGTAGCTTAATA
32201603 AATTTA
1 AATTTA
32201609 ACATACATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
43 2 0.04
44 2 0.04
45 2 0.04
48 4 0.09
49 3 0.07
50 32 0.71
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.42
Consensus pattern (45 bp):
AATTTACATTATGGACGATCATGTACAATGTTTTGTAGCTTAATA
Found at i:32201584 original size:50 final size:50
Alignment explanation
Indices: 32201525--32201624 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
32201515 ACATTGGCCG
32201525 ATCATGTACAATGTTTTGTAGCTTAATAAATTTAACATACATTATGTATT
1 ATCATGTACAATGTTTTGTAGCTTAATAAATTTAACATACATTATGTATT
32201575 ATCATGTACAATGTTTTGTAGCTTAATAAATTTAACATACATTATGTATT
1 ATCATGTACAATGTTTTGTAGCTTAATAAATTTAACATACATTATGTATT
32201625 CATAATATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (50 bp):
ATCATGTACAATGTTTTGTAGCTTAATAAATTTAACATACATTATGTATT
Found at i:32207429 original size:27 final size:27
Alignment explanation
Indices: 32207373--32207619 Score: 316
Period size: 27 Copynumber: 9.2 Consensus size: 27
32207363 AAAGTACTCC
* *
32207373 CGATTTACAAAATTACC-GTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
32207399 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
** * *
32207426 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
*
32207453 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
* **
32207480 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
32207507 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
* *
32207534 CAATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
* *
32207561 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
** * *
32207588 CGATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
*
32207615 TGATT
1 CGATT
32207620 GTGAAATTAC
Statistics
Matches: 191, Mismatches: 29, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
26 16 0.08
27 175 0.92
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCATTTTACCCT
Found at i:32207474 original size:54 final size:54
Alignment explanation
Indices: 32207373--32207619 Score: 352
Period size: 54 Copynumber: 4.6 Consensus size: 54
32207363 AAAGTACTCC
* *
32207373 CGATTTACAAAATTACCG-TTTACCCTCGATTTACAGAATTACCATTTTACCCT
1 CGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCT
* * *
32207426 CGATTTTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCT
1 CGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCT
*
32207480 CGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCT
1 CGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCT
* * * * * *
32207534 CAATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTATCGTTTTACCCT
1 CGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCT
* * *
32207588 CGATTTGTAAAATTACTATTTTACCCTTGATT
1 CGATTTATAAAATTACTGTTTTACCCTCGATT
32207620 GTGAAATTAC
Statistics
Matches: 176, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
53 16 0.09
54 160 0.91
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
CGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCT
Found at i:32207506 original size:81 final size:81
Alignment explanation
Indices: 32207342--32207619 Score: 346
Period size: 81 Copynumber: 3.4 Consensus size: 81
32207332 TACTGAAATG
* * *** * **
32207342 CCCTCGACTTGTAAAATTACCAAAGTACTCC-CGATTTACAAAATTAC-CGTTTACCCTCGATTT
1 CCCTCGATTTATAAAATTACCATTTTAC-CCTCGATTTACAGAATTACTATTTTACCCTCGATTT
**
32207405 ACAGAATTACCATTTTA
65 ACAGAATTACTGTTTTA
* *
32207422 CCCTCGATTTTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTA
*
32207487 TAGAATTACTGTTTTA
66 CAGAATTACTGTTTTA
* * *
32207503 CCCTCGATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTA
32207568 CAGAATTA-TCGTTTTA
66 CAGAATTACT-GTTTTA
* * *
32207584 CCCTCGATTTGTAAAATTACTATTTTACCCTTGATT
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATT
32207620 GTGAAATTAC
Statistics
Matches: 171, Mismatches: 24, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
79 2 0.01
80 38 0.22
81 131 0.77
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTA
CAGAATTACTGTTTTA
Found at i:32207661 original size:27 final size:28
Alignment explanation
Indices: 32207622--32207819 Score: 185
Period size: 27 Copynumber: 7.3 Consensus size: 28
32207612 CCTTGATTGT
*
32207622 GAAATTACTGAAATACCCCTGTAGGGTA
1 GAAATTACCGAAATACCCCTGTAGGGTA
*
32207650 GAAATT-CCGAAATACCCCTATAGGGTA
1 GAAATTACCGAAATACCCCTGTAGGGTA
** * * *
32207677 G-AATTATTGAAATACCCTTATAGGATA
1 GAAATTACCGAAATACCCCTGTAGGGTA
* *
32207704 G-AATTACCAAAATACCCATGTAGGGTA
1 GAAATTACCGAAATACCCCTGTAGGGTA
* *
32207731 G-AATTATCGAAATACCCTTGTAGGGTA
1 GAAATTACCGAAATACCCCTGTAGGGTA
* *
32207758 GAAA-TACCAAAATACCCCTGTAAGGTA
1 GAAATTACCGAAATACCCCTGTAGGGTA
* * ** *
32207785 G-AATTACTGAGATACCTTTGTGGGGTA
1 GAAATTACCGAAATACCCCTGTAGGGTA
32207812 -AAATTACC
1 GAAATTACC
32207820 ATTTTGCCCC
Statistics
Matches: 139, Mismatches: 27, Indels: 9
0.79 0.15 0.05
Matches are distributed among these distances:
26 6 0.04
27 125 0.90
28 8 0.06
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (28 bp):
GAAATTACCGAAATACCCCTGTAGGGTA
Found at i:32207811 original size:81 final size:81
Alignment explanation
Indices: 32207624--32207819 Score: 209
Period size: 81 Copynumber: 2.4 Consensus size: 81
32207614 TTGATTGTGA
* * ***
32207624 AATTACTGAAATACCCCTGTAGGGTAGAAATT-CCGAAATACCCCTATAGGGTAGAATTATTGAA
1 AATTACTGAAATACCCATGTAGGGTAG-AATTACCGAAATACCCCTATAGGGTAGAAATACCAAA
32207688 ATACCCTTATAGGATAG
65 ATACCCTTATAGGATAG
** * * *
32207705 AATTACCAAAATACCCATGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCAAAA
1 AATTACTGAAATACCCATGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCAAAA
32207770 TACCCCTGTA-AGG-TAG
66 TA-CCCT-TATAGGATAG
* ** * *
32207786 AATTACTGAGATACCTTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCATGTAGGGTAGAATTACC
32207820 ATTTTGCCCC
Statistics
Matches: 94, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
80 4 0.04
81 81 0.86
82 7 0.07
83 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (81 bp):
AATTACTGAAATACCCATGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCAAAA
TACCCTTATAGGATAG
Found at i:32207820 original size:54 final size:55
Alignment explanation
Indices: 32207624--32207820 Score: 251
Period size: 54 Copynumber: 3.7 Consensus size: 55
32207614 TTGATTGTGA
* * *
32207624 AATTACTGAAATACCCCTGTAGGGTAGAAATT-CCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAAATTACCAAAATACCCCTGTAGGGTAG
* * * *
32207678 AATTATTGAAATACCCTTATAGGATAG-AATTACCAAAATACCCATGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAAATTACCAAAATACCCCTGTAGGGTAG
*
32207732 AATTA-TCGAAATACCCTTGTAGGGTAGAAA-TACCAAAATACCCCTGTAAGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAAATTACCAAAATACCCCTGTAGGGTAG
* * *
32207786 AATTACTGAGATACCTTTGTGGGGTA-AAATTACCA
1 AATTACTGAAATACCCTTGTAGGGTAGAAATTACCA
32207821 TTTTGCCCCT
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
53 8 0.06
54 113 0.91
55 3 0.02
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (55 bp):
AATTACTGAAATACCCTTGTAGGGTAGAAATTACCAAAATACCCCTGTAGGGTAG
Found at i:32208061 original size:27 final size:26
Alignment explanation
Indices: 32208022--32208100 Score: 104
Period size: 27 Copynumber: 3.0 Consensus size: 26
32208012 GGAAGCGTTG
*
32208022 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTCTGCCAC-AATATCTGTTC
*
32208049 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGT-TC
* *
32208076 TGGTGACTCTGTCACAATATCTGTT
1 TGGTGGCTCTGCCACAATATCTGTT
32208101 GACCGATCGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 10 0.21
27 37 0.79
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTC
Found at i:32208220 original size:22 final size:22
Alignment explanation
Indices: 32208188--32208246 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
32208178 CCCGTTAGTA
*
32208188 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
32208210 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
32208232 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
32208247 GCGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:32208439 original size:6 final size:6
Alignment explanation
Indices: 32208430--32208604 Score: 164
Period size: 6 Copynumber: 28.8 Consensus size: 6
32208420 TTGCATTCAC
* * *
32208430 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
32208479 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
32208528 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
32208576 ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
32208605 CATTTTGGTT
Statistics
Matches: 139, Mismatches: 16, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
5 9 0.06
6 119 0.86
7 8 0.06
8 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:32208548 original size:73 final size:73
Alignment explanation
Indices: 32208430--32208593 Score: 294
Period size: 73 Copynumber: 2.2 Consensus size: 73
32208420 TTGCATTCAC
*
32208430 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTTTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
32208495 TGATTCTG
66 TGATTCTG
*
32208503 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
32208568 TGATTCTG
66 TGATTCTG
32208576 ATTCTG-TTACTGATTCTG
1 ATTCTGATT-CTGATTCTG
32208594 ATTCTGATTC
Statistics
Matches: 88, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
72 2 0.02
73 86 0.98
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (73 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTG
Found at i:32208622 original size:30 final size:30
Alignment explanation
Indices: 32208497--32208625 Score: 163
Period size: 30 Copynumber: 4.3 Consensus size: 30
32208487 ACTGATTCTG
*
32208497 ATTCTGATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGATTCTGTTACC-A
*
32208528 ATTCTGATTCTGATTCTGATTCTGTTACTA
1 ATTCTGATTCTGATTCTGATTCTGTTACCA
**
32208558 ATAT-TGATTCTGATTCTGATTCTGTTACTG
1 AT-TCTGATTCTGATTCTGATTCTGTTACCA
* *
32208588 ATTCTGATTCTGATTCTCATTTTGGTT-CCA
1 ATTCTGATTCTGATTCTGATTCT-GTTACCA
32208618 ATTCTGAT
1 ATTCTGAT
32208626 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.01
30 56 0.64
31 31 0.35
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGATTCTGTTACCA
Found at i:32215078 original size:14 final size:14
Alignment explanation
Indices: 32215056--32215086 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
32215046 AAAATATAGT
*
32215056 CCGATTGAACCGAA
1 CCGAGTGAACCGAA
32215070 CCGAGTGAACCGAA
1 CCGAGTGAACCGAA
32215084 CCG
1 CCG
32215087 GCCAAGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.26, T:0.10
Consensus pattern (14 bp):
CCGAGTGAACCGAA
Found at i:32221170 original size:17 final size:16
Alignment explanation
Indices: 32221148--32221181 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32221138 AGAGATGGCA
32221148 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
32221165 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
32221181 T
1 T
32221182 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:32228998 original size:50 final size:50
Alignment explanation
Indices: 32228939--32229065 Score: 157
Period size: 50 Copynumber: 2.5 Consensus size: 50
32228929 TGTGTTAGTG
* *
32228939 TAAGACCATGTCTGGGACATGGCATGGGCAC-AGAAAGAGGAGAGCCAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGC-CTAGAAAGAAGAGAGCCAGTA
* * * * * * *
32228989 TAAGACCATGTCTGGGATATGGAATCGGCCTTGATATAAGAGAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCTAGAAAGAAGAGAGCCAGTA
32229039 TAAGACCATGTCTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
32229066 ACTCGATTTT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
49 1 0.02
50 64 0.98
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.20
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCTAGAAAGAAGAGAGCCAGTA
Found at i:32229173 original size:43 final size:43
Alignment explanation
Indices: 32229037--32229179 Score: 130
Period size: 43 Copynumber: 3.3 Consensus size: 43
32229027 AGAGAGTCAG
* *
32229037 TGTAAGACCATGTCTGGGACA-TGGCATCGACTCGATTTTTGATTACA
1 TGTAAGACCATGTGTGGGACAGTGGCAT-GA-T--A-TTGTGATTACA
* * * * *
32229084 TGTAAGA-CATGTTTGGGACATTGGCATTATATTGTGATTTCG
1 TGTAAGACCATGTGTGGGACAGTGGCATGATATTGTGATTACA
* *
32229126 TGTAAGACCCTGTGTGGGACAGTGGCATCGATA-TGTGATAACA
1 TGTAAGACCATGTGTGGGACAGTGGCAT-GATATTGTGATTACA
32229169 TGTAAGACCAT
1 TGTAAGACCAT
32229180 ATCTAGGATA
Statistics
Matches: 80, Mismatches: 13, Indels: 10
0.78 0.13 0.10
Matches are distributed among these distances:
42 15 0.19
43 35 0.44
44 3 0.04
45 1 0.01
46 13 0.16
47 13 0.16
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTGTGGGACAGTGGCATGATATTGTGATTACA
Found at i:32236022 original size:40 final size:40
Alignment explanation
Indices: 32235978--32236162 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
32235968 GCTACTCGTT
* *
32235978 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
32236018 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
32236058 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
32236097 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
32236138 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32236163 CATCATTCAA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:32236095 original size:79 final size:81
Alignment explanation
Indices: 32235978--32236162 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
32235968 GCTACTCGTT
*
32235978 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTA-AGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32236041 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
32236058 CAAATGCCTTCGGG-CTTAGCCCGGAATT-AGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
32236121 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
32236138 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32236163 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 32 0.35
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:32244874 original size:47 final size:48
Alignment explanation
Indices: 32244758--32244881 Score: 157
Period size: 47 Copynumber: 2.6 Consensus size: 48
32244748 CGTAAGCTAG
* * * *
32244758 TGTAAGA-CATGTATGGGACAT-GCATCGACTACGAGATGATAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATCATAGCCAA
32244804 TGTAAGACCATGTCTGGGACATGGCATCGACTA-GAGA-CATGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATCAT-AGCCAA
* *
32244851 TGTAAGACCGTGTCTGGGACATGGAATCGAC
1 TGTAAGACCATGTCTGGGACATGGCATCGAC
32244882 ACCTTACCTA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
46 9 0.13
47 50 0.72
48 10 0.14
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.22
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATCATAGCCAA
Found at i:32249053 original size:6 final size:6
Alignment explanation
Indices: 32249042--32249156 Score: 92
Period size: 6 Copynumber: 18.8 Consensus size: 6
32249032 AACCAAAATG
* * *
32249042 AGAATC AGAATC AGAATT AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * * *
32249091 AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC AAAATT AG-GTGAC
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C
32249140 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
32249157 GTGAATGCAA
Statistics
Matches: 85, Mismatches: 16, Indels: 16
0.73 0.14 0.14
Matches are distributed among these distances:
5 4 0.05
6 74 0.87
7 5 0.06
8 2 0.02
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:32249085 original size:31 final size:31
Alignment explanation
Indices: 32249047--32249156 Score: 177
Period size: 31 Copynumber: 3.6 Consensus size: 31
32249037 AAATGAGAAT
*
32249047 CAGAATCAGAATTAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGAATTAGGTGA
* *
32249078 CAGAATCAGAATCAGAATCAGTATTA-GTAA
1 CAGAATCAGAATCAGAATCAGAATTAGGTGA
*
32249108 CAGAATCAGAATCAGAATCAAAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGAATTAGGTGA
32249139 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
32249157 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
30 27 0.38
31 45 0.62
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATTAGGTGA
Found at i:32249344 original size:27 final size:27
Alignment explanation
Indices: 32249274--32249347 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
32249264 AGCATAGCTG
* *
32249274 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
32249300 CCAGATAT-AGATATTGTGGCAGAGCCA
1 CCAGA-ATCAGATAATGTGGCAGAGCCA
32249327 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
32249348 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 7 0.17
27 32 0.80
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:32249354 original size:27 final size:27
Alignment explanation
Indices: 32249298--32249355 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
32249288 GTGACAGAGT
* * *
32249298 CACCAGATATAGATATTGTGGCAGAGC
1 CACCAGATATAGATAATGTGGCAAACC
32249325 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATAT-AGATAATGTGGCAAACC
32249352 CACC
1 CACC
32249356 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGATATAGATAATGTGGCAAACC
Found at i:32249560 original size:22 final size:22
Alignment explanation
Indices: 32249512--32249570 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
32249502 GTAAATACGT
*
32249512 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
32249534 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
32249556 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
32249571 TAATAACTGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:32249702 original size:27 final size:28
Alignment explanation
Indices: 32249663--32249739 Score: 95
Period size: 27 Copynumber: 2.8 Consensus size: 28
32249653 CGGTCAACAG
* *
32249663 ATATTGTGACAGAGTCACCA-AATACAA
1 ATATTGTGGCAGAGCCACCAGAATACAA
* *
32249690 ATATTGTGGCAGAGCCACCAGAATAGAT
1 ATATTGTGGCAGAGCCACCAGAATACAA
*
32249718 AT-TTGTGGCATAGCCACCAGAA
1 ATATTGTGGCAGAGCCACCAGAA
32249740 ACGCTTCCTC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 37 0.84
28 7 0.16
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (28 bp):
ATATTGTGGCAGAGCCACCAGAATACAA
Found at i:32249989 original size:27 final size:27
Alignment explanation
Indices: 32249941--32250135 Score: 187
Period size: 27 Copynumber: 7.2 Consensus size: 27
32249931 GGGCAAAATG
* * ** *
32249941 GTAATTTTACCCCACAAAGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
32249968 GTAATTCTACCTTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
32249995 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
**
32250021 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * * *
32250049 GTAACTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
32250076 GCAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
32250102 GAAAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
32250130 GTAATT
1 GTAATT
32250136 TCACAATCAA
Statistics
Matches: 136, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.01
27 132 0.97
28 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:32250042 original size:54 final size:54
Alignment explanation
Indices: 32249939--32250135 Score: 243
Period size: 54 Copynumber: 3.6 Consensus size: 54
32249929 AGGGGCAAAA
* * * * *
32249939 TGGTAATTTTACCCCACAAAGGTATCTCAGTAATTCTACCTTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
*
32249993 TGGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTT
* * * * *
32250047 TGGTAACTCTATCCTATAAGGGTATTTCAGCAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
* ** *
32250101 CGAAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATT
32250136 TCACAATCAA
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 119 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
Found at i:32250170 original size:27 final size:27
Alignment explanation
Indices: 32250140--32250603 Score: 515
Period size: 27 Copynumber: 17.2 Consensus size: 27
32250130 GTAATTTCAC
* *
32250140 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32250167 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32250194 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
32250221 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32250248 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32250275 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
32250302 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32250329 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * **
32250356 AATCAAGGGTAAAATGATAACTT-TACA
1 AATCGAGGGTAAAACGGTAA-TTCTGTA
* *
32250383 AATTGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
32250410 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
32250437 AA-CTGAGGGTAAAACAGTAATTTTACA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * *
32250464 AATCGAAGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
32250491 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32250518 AA-CTAAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
32250545 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
32250572 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
32250599 AATCG
1 AATCG
32250604 GGAGTACTTT
Statistics
Matches: 363, Mismatches: 64, Indels: 20
0.81 0.14 0.04
Matches are distributed among these distances:
26 6 0.02
27 351 0.97
28 6 0.02
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:32254748 original size:50 final size:49
Alignment explanation
Indices: 32254623--32254853 Score: 230
Period size: 50 Copynumber: 4.5 Consensus size: 49
32254613 TGAGGTTGCA
* * * * *
32254623 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAACTGTGATCAGG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-T-TGGTCACG
* **
32254674 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
*
32254724 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * * *
32254773 TGTGTAGTACTAATACCAAGTGCAGGTTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTAC---T---AAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* *
32254828 TGTGTAGTACTATGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
32254854 TGCCTACCAG
Statistics
Matches: 154, Mismatches: 18, Indels: 18
0.81 0.09 0.09
Matches are distributed among these distances:
49 30 0.19
50 46 0.30
51 31 0.20
52 2 0.01
55 45 0.29
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:32254819 original size:55 final size:51
Alignment explanation
Indices: 32254623--32254853 Score: 208
Period size: 55 Copynumber: 4.5 Consensus size: 51
32254613 TGAGGTTGCA
* * ** * * *
32254623 TGTGTAGTAC--TAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCAGG
1 TGTGTAGTACTATAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
32254674 TGTGTAGTAC--TAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTATAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
32254724 TGTGTAGTAC--TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTATAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * *
32254773 TGTGTAGTACTAATACCAAGTGCAGGTTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACT-AT---AAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
32254828 TGTGTAGTACTAT--GTGTAGGCTACTA
1 TGTGTAGTACTATAAGTGCAGGCTACTA
32254854 TGCCTACCAG
Statistics
Matches: 154, Mismatches: 19, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
49 29 0.19
50 44 0.29
51 32 0.21
52 1 0.01
54 2 0.01
55 46 0.30
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTATAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:32257266 original size:15 final size:16
Alignment explanation
Indices: 32257209--32257269 Score: 76
Period size: 15 Copynumber: 4.1 Consensus size: 16
32257199 CATAGTATCG
32257209 TATCT-TGGGTTTCTT
1 TATCTCTGGGTTTCTT
32257224 TA-CTCTGGGTTTCTT
1 TATCTCTGGGTTTCTT
*
32257239 TAT-TCTGGGTTTCTC
1 TATCTCTGGGTTTCTT
*
32257254 TATCT-TGGATTTCTT
1 TATCTCTGGGTTTCTT
32257269 T
1 T
32257270 TTTCGAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
14 2 0.05
15 37 0.93
16 1 0.03
ACGTcount: A:0.08, C:0.16, G:0.18, T:0.57
Consensus pattern (16 bp):
TATCTCTGGGTTTCTT
Found at i:32262292 original size:47 final size:46
Alignment explanation
Indices: 32262182--32262446 Score: 220
Period size: 46 Copynumber: 5.7 Consensus size: 46
32262172 ACTTGTGTGT
* * * * *
32262182 GCCAGTGTAAGACATGTCTAGGACAT-GCATCGGC-CACATTATGAGA
1 GCCAATGTAAGACATGTCTGGGACATGGCATCGGCTC-GA-GACGAGA
* * *
32262228 GCCAATTTAAGACCATGTCTGGGACATGGCATTGGCATGGAGACGAGA
1 GCCAATGTAAGA-CATGTCTGGGACATGGCATCGGC-TCGAGACGAGA
* * *
32262276 GCTAGTGTAAGACATGTCTGGGAAAT-GCATCGGCCTCGAGACGTA-A
1 GCCAATGTAAGACATGTCTGGGACATGGCATCGG-CTCGAGACG-AGA
* * *
32262322 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCTACGATATG-GTA
1 GCCAATGTAAGACATGTCTGGGACATGGCATCGGCT-CGAGACGAG-A
* * * *
32262368 GTCAATGTAAGACCATGTCTGGGACATGGCACCGGCTTGAGA-TATGA
1 GCCAATGTAAGA-CATGTCTGGGACATGGCATCGGCTCGAGACGA-GA
32262415 GCCAATGTAAGACAGTGTCTGGGACATGGCAT
1 GCCAATGTAAGACA-TGTCTGGGACATGGCAT
32262447 AGGCACTTTA
Statistics
Matches: 179, Mismatches: 26, Indels: 27
0.77 0.11 0.12
Matches are distributed among these distances:
45 2 0.01
46 73 0.41
47 73 0.41
48 30 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GCCAATGTAAGACATGTCTGGGACATGGCATCGGCTCGAGACGAGA
Done.