Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 103 of 255
Found at i:32262434 original size:140 final size:140
Alignment explanation
Indices: 32262182--32262438 Score: 360
Period size: 140 Copynumber: 1.8 Consensus size: 140
32262172 ACTTGTGTGT
*
32262182 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAATTTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
** * *
32262247 TGGGACATGGCATTGGCATGGAGACGAGAGCTAGTGTAAGACATGTCTGGGAAATGCATCGGCCT
66 TGGGACATGGCACCGGCATGGAGACGAGAGCCAATGTAAGACATGTCTGGGAAATGCATCGGCCT
32262312 CGAGACGTAA
131 CGAGACGTAA
* * *
32262322 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-TATG-GTAGTCAATGTAAGACCATG
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGAG-AGCCAATGTAAGACCATG
* *
32262385 TCTGGGACATGGCACCGGC-TTGAGA-TATGAGCCAATGTAAGACAGTGTCTGGGA
64 TCTGGGACATGGCACCGGCATGGAGACGA-GAGCCAATGTAAGACA-TGTCTGGGA
32262439 CATGGCATAG
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.19
140 81 0.79
141 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (140 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
TGGGACATGGCACCGGCATGGAGACGAGAGCCAATGTAAGACATGTCTGGGAAATGCATCGGCCT
CGAGACGTAA
Found at i:32270890 original size:47 final size:47
Alignment explanation
Indices: 32270819--32271605 Score: 1270
Period size: 47 Copynumber: 16.4 Consensus size: 47
32270809 TATCACAGTT
* * * * *
32270819 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATAC
* *
32270866 ATATACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
32270913 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
**
32270960 ATACACTTTCACATTCATCACATTATCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
*
32271009 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTCTCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
*
32271058 ATACACTTTCACATTGATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
32271105 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
32271152 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
32271199 ATACACTTTGACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
32271246 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
**
32271295 ATACACACACTTTCACATTCATCACATTATCCATTCGGCCTTATCACATATAC
1 AT----ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
32271348 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
32271397 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
32271444 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
32271491 ATACACTTTGACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
32271538 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
32271587 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
32271606 GTAACAAAAT
Statistics
Matches: 702, Mismatches: 27, Indels: 20
0.94 0.04 0.03
Matches are distributed among these distances:
47 445 0.63
48 2 0.00
49 208 0.30
53 47 0.07
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:32271193 original size:22 final size:22
Alignment explanation
Indices: 32271168--32271243 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
32271158 TTTCACATTC
32271168 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
**** * * *
32271190 ATCACATACATACACTTTGACATT
1 ATCACAT-TGGCCA-TTCGGCCTT
32271214 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
32271237 ATCACAT
1 ATCACAT
32271244 ACATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:32271218 original size:25 final size:25
Alignment explanation
Indices: 32271190--32271268 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
32271180 ATTCGGCCTT
32271190 ATCACATACATACACTTTGACATTC
1 ATCACATACATACACTTTGACATTC
**** * * *
32271215 ATCACAT-TGGCCA-TTCGGCCTT-
1 ATCACATACATACACTTTGACATTC
*
32271237 ATCACATACATACACTTTCACATTC
1 ATCACATACATACACTTTGACATTC
32271262 ATCACAT
1 ATCACAT
32271269 TGGCCATTCG
Statistics
Matches: 36, Mismatches: 15, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 7 0.19
25 14 0.39
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (25 bp):
ATCACATACATACACTTTGACATTC
Found at i:32271367 original size:27 final size:27
Alignment explanation
Indices: 32271337--32271419 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
32271327 ATTCGGCCTT
32271337 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
* * *
32271364 ATCACAT-TGGC---CA--TTCGGCCTT-
1 ATCACATAT-ACATACACTTTC-ACATTC
32271386 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
32271413 ATCACAT
1 ATCACAT
32271420 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 11 0.27
23 4 0.10
24 2 0.05
25 2 0.05
26 4 0.10
27 18 0.44
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.33
Consensus pattern (27 bp):
ATCACATATACATACACTTTCACATTC
Found at i:32271421 original size:339 final size:333
Alignment explanation
Indices: 32270819--32271605 Score: 1378
Period size: 339 Copynumber: 2.3 Consensus size: 333
32270809 TATCACAGTT
* * * * * *
32270819 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATATATATACTTTCACATTCA
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCA
*
32270883 TCACATTGGCCATTCAGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGC
65 TCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGC
32270948 CTTATCACATACATACACTTTCACATTCATCACATTATCCATTCGGCCTTATCACATATACATAC
130 CTTATCACATACATACACTTTCACATTCATCACATTATCCATTCGGCCTTATCACATATACATAC
* *
32271013 ACTTTCACATTCATCACATTGGCCATTCGGCCTTCTCACATATACATACACTTTCACATTGATCA
195 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCA
32271078 CATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTT
260 CATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTT
*
32271143 ATCATATAC
325 ATCACATAC
*
32271152 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTGACATTCAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
32271217 CACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCC
66 CACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCC
32271282 TTATCACATATACATACACACACTTTCACATTCATCACATTATCCATTCGGCCTTATCACATATA
131 TTATCAC--ATACAT----ACACTTTCACATTCATCACATTATCCATTCGGCCTTATCACATATA
32271347 CATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATT
190 CATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATT
32271412 CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
255 CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
32271477 GCCTTATCACATAC
320 GCCTTATCACATAC
*
32271491 ATACACTTTGACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
32271556 CACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATC
66 CACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTCATC
32271606 GTAACAAAAT
Statistics
Matches: 432, Mismatches: 13, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
333 126 0.29
334 2 0.00
335 6 0.01
339 275 0.64
341 23 0.05
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (333 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
CACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCC
TTATCACATACATACACTTTCACATTCATCACATTATCCATTCGGCCTTATCACATATACATACA
CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCAC
ATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTA
TCACATAC
Found at i:32271488 original size:22 final size:22
Alignment explanation
Indices: 32271460--32271535 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
32271450 TTTCACATTC
32271460 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
**** * * *
32271482 ATCACATACATACACTTTGACATT
1 ATCACAT-TGGCCA-TTCGGCCTT
32271506 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
32271529 ATCACAT
1 ATCACAT
32271536 ACATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:32277594 original size:51 final size:51
Alignment explanation
Indices: 32277523--32277704 Score: 170
Period size: 51 Copynumber: 3.6 Consensus size: 51
32277513 TGGTTTTAGG
* * * ***
32277523 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACGCGATAGCTTCGA
1 TCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAAGATAGCTTCGA
* * *
32277574 TCACATGTGTGGTGCTAAGTGTAGGCCACTATGTGTAAAAGATAGCTTTGG
1 TCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAAGATAGCTTCGA
* * * * * *
32277625 TCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTTGA
1 TCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAA-AAGATAGCTTCGA
* * *
32277676 -CTACAAGGGTGGTACTATGTGTAGGCCAC
1 TC-ACATGTGTGGTACTAAGTGTAGGCCAC
32277705 CGGGCATCCG
Statistics
Matches: 111, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
50 3 0.03
51 108 0.97
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (51 bp):
TCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAAGATAGCTTCGA
Found at i:32279016 original size:16 final size:18
Alignment explanation
Indices: 32278995--32279027 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
32278985 CATACTAGCT
32278995 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
32279011 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
32279028 GTGACGAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:32279655 original size:45 final size:45
Alignment explanation
Indices: 32279515--32279728 Score: 234
Period size: 45 Copynumber: 4.9 Consensus size: 45
32279505 TTTTATCAAA
* *
32279515 TCACCGGCATT-TAGCCTGCTAGGTTTTAAA--CCCGAAT--TCAT-
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCCCGAATAGT-ATC
* *
32279556 TCACCGGCATT-TCA-CCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTAT-AGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
32279598 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* ** *
32279643 TCACCAGCATTATAGCCTGCTAGGCTTGAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
32279688 TCACCGGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATAG
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAG
32279729 AACTGTAAGA
Statistics
Matches: 150, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
40 5 0.03
41 29 0.19
42 13 0.09
43 15 0.10
44 5 0.03
45 82 0.55
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:32280591 original size:47 final size:47
Alignment explanation
Indices: 32280533--32280672 Score: 226
Period size: 47 Copynumber: 3.0 Consensus size: 47
32280523 AACATTTTCT
*
32280533 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
* * *
32280580 TTAACTGAGTAACTTATCCAGAAATATTAAGAGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
* *
32280627 TTAACTAAGTAGCTTATCTGGAAATATTAAGAGCAAATTTAACAAG
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAG
32280673 ATTTAAATTC
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 84 1.00
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:32284269 original size:28 final size:28
Alignment explanation
Indices: 32284206--32284413 Score: 332
Period size: 28 Copynumber: 7.5 Consensus size: 28
32284196 ATATTAAGTC
* * *
32284206 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
32284233 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
32284261 CGCACACTTAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
32284288 AGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
32284316 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
32284344 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
32284372 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
32284399 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32284414 GCACAATTTA
Statistics
Matches: 171, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
27 64 0.37
28 107 0.63
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:32284293 original size:55 final size:55
Alignment explanation
Indices: 32284206--32284438 Score: 340
Period size: 55 Copynumber: 4.2 Consensus size: 55
32284196 ATATTAAGTC
* * *
32284206 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
32284261 CGCACACTTAGTGCTACATAGTCAACTAGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
32284316 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
32284372 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
32284428 CGCACACTTAG
1 CGCACACTTAG
32284439 CGCCAATCTC
Statistics
Matches: 162, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
55 94 0.58
56 68 0.42
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32284325 original size:83 final size:83
Alignment explanation
Indices: 32284207--32284438 Score: 349
Period size: 83 Copynumber: 2.8 Consensus size: 83
32284197 TATTAAGTCC
* * *
32284207 GCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAG
1 GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAG
32284272 TGCTACATAGTCA-ACTA
66 TGCTACATAGTCAGACTA
*
32284289 GCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 GCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
*
32284354 GTGCTACATAGTCAGACTC
65 GTGCTACATAGTCAGACTA
* * * * *
32284373 GCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACCCGCACACTTA
1 GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACTCGCACACTTA
32284438 G
65 G
32284439 CGCCAATCTC
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
82 19 0.14
83 76 0.56
84 41 0.30
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.25
Consensus pattern (83 bp):
GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAG
TGCTACATAGTCAGACTA
Found at i:32302993 original size:28 final size:28
Alignment explanation
Indices: 32302930--32303137 Score: 332
Period size: 28 Copynumber: 7.5 Consensus size: 28
32302920 ATATTAAGTC
* * *
32302930 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
32302957 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
32302985 CGCACACTTAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
32303012 AGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
32303040 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
32303068 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
32303096 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
32303123 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32303138 GCACAATTTA
Statistics
Matches: 171, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
27 64 0.37
28 107 0.63
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:32303017 original size:55 final size:55
Alignment explanation
Indices: 32302930--32303162 Score: 340
Period size: 55 Copynumber: 4.2 Consensus size: 55
32302920 ATATTAAGTC
* * *
32302930 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
32302985 CGCACACTTAGTGCTACATAGTCAACTAGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
32303040 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
32303096 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
32303152 CGCACACTTAG
1 CGCACACTTAG
32303163 CGCCAATCTC
Statistics
Matches: 162, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
55 94 0.58
56 68 0.42
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32303049 original size:83 final size:83
Alignment explanation
Indices: 32302931--32303162 Score: 349
Period size: 83 Copynumber: 2.8 Consensus size: 83
32302921 TATTAAGTCC
* * *
32302931 GCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAG
1 GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAG
32302996 TGCTACATAGTCA-ACTA
66 TGCTACATAGTCAGACTA
*
32303013 GCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 GCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
*
32303078 GTGCTACATAGTCAGACTC
65 GTGCTACATAGTCAGACTA
* * * * *
32303097 GCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACCCGCACACTTA
1 GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACTCGCACACTTA
32303162 G
65 G
32303163 CGCCAATCTC
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
82 19 0.14
83 76 0.56
84 41 0.30
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.25
Consensus pattern (83 bp):
GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAG
TGCTACATAGTCAGACTA
Found at i:32324377 original size:55 final size:53
Alignment explanation
Indices: 32324263--32324713 Score: 375
Period size: 53 Copynumber: 8.5 Consensus size: 53
32324253 AACTTACCAT
* * * * *
32324263 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
32324316 TGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGACTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * * * * *
32324371 TTCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGGACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* ***
32324425 TGCCATGCCTTGGCATGGTCTTACATGATA---T-CCTTATCTTAC-CA--AA
1 TGCCATGCCTTGGCATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
* *** * * *
32324471 TGTCATGTTCC-AAACATGGTCTTACATGGTATCATTGTCTTAT-GAACTCACCAA
1 TGCCATG--CCTTGGCATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * ** *
32324525 TGTCATGCCTTGGCATGGTCTTAAATGGTATCCTTGTATTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
*
32324578 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * * * *
32324633 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGGACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
32324687 TGCCATGCCTTGGCATGGTCGTACATG
1 TGCCATGCCTTGGCATGGTCTTACATG
32324714 ATATCCTTAT
Statistics
Matches: 322, Mismatches: 57, Indels: 37
0.77 0.14 0.09
Matches are distributed among these distances:
46 8 0.02
47 16 0.05
48 3 0.01
49 8 0.02
50 1 0.00
51 3 0.01
52 13 0.04
53 104 0.32
54 75 0.23
55 87 0.27
56 4 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGGCATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:32324654 original size:108 final size:107
Alignment explanation
Indices: 32324485--32324713 Score: 280
Period size: 108 Copynumber: 2.1 Consensus size: 107
32324475 ATGTTCCAAA
* * * * *
32324485 CATGGTCTTACATGGTATCATTGTCTTATGAACTCACCAATGTCATGCCTTGGCATGGTCTTAAA
1 CATGGTCTTACATGGGACCATTGCCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAAA
* *
32324550 TGGTATCCTTGTATTAT-GAACTCACCAATGCCATGCCTTGG
66 TGATATCCTTGCATTATAGAACTCACCAATGCCATGCCTTGG
* * *
32324591 CATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTA
1 CATGGTCTTACATGGGACCATTGCCTTAT-G-AACTCACCAATGCCATGCCTTGACATGGTCTTA
* * * * * *
32324656 CATGATTTCCTTGCCTTATAGGACTTATCAATGCCATGCCTTGG
64 AATGATATCCTTGCATTATAGAACTCACCAATGCCATGCCTTGG
*
32324700 CATGGTCGTACATG
1 CATGGTCTTACATG
32324714 ATATCCTTAT
Statistics
Matches: 103, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
106 25 0.24
107 1 0.01
108 43 0.42
109 34 0.33
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (107 bp):
CATGGTCTTACATGGGACCATTGCCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAAA
TGATATCCTTGCATTATAGAACTCACCAATGCCATGCCTTGG
Found at i:32324749 original size:262 final size:262
Alignment explanation
Indices: 32324251--32324774 Score: 897
Period size: 262 Copynumber: 2.0 Consensus size: 262
32324241 TTTCCCTTTT
* * * **
32324251 TGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTATGAACTCACCAA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTAAATGGTATCCTTGCTTTATGAACTCACCAA
*
32324316 TGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGACTTATAGTAACTCATCAATTCCATGTCT
66 TGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGACTTATAGTAACTCATCAATGCCATGTCT
*
32324381 TGACATGGTCTTACATGATTTCCTTGCCTTATAGGACTTATCAATGCCATGCCTTGGCATGGTCT
131 TGACATGGTCTTACATGATTTCCTTGCCTTATAGGACTTATCAATGCCATGCCTTGGCATGGTCG
* *
32324446 TACATGATATCCTTATCTTACCAAATGTCATGTTCCAAACATGGTCTTACATGGTATCATTGTCT
196 TACATGATATCCTTATCTTACCAAATGCCATGTTACAAACATGGTCTTACATGGTATCATTGTCT
32324511 TA
261 TA
* *
32324513 TGAACTCACCAATGTCATGCCTTGGCATGGTCTTAAATGGTATCCTTG-TATTATGAACTCACCA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTAAATGGTATCCTTGCT-TTATGAACTCACCA
* *
32324577 ATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTC
65 ATGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGACTTATAGTAACTCATCAATGCCATGTC
32324642 TTGACATGGTCTTACATGATTTCCTTGCCTTATAGGACTTATCAATGCCATGCCTTGGCATGGTC
130 TTGACATGGTCTTACATGATTTCCTTGCCTTATAGGACTTATCAATGCCATGCCTTGGCATGGTC
* *
32324707 GTACATGATATCCTTATCTTACTAAATGCCATGTTACAAACATGGTCTTACATGGTATCCTTGTC
195 GTACATGATATCCTTATCTTACCAAATGCCATGTTACAAACATGGTCTTACATGGTATCATTGTC
32324772 TTA
260 TTA
32324775 CCAAATGCCA
Statistics
Matches: 246, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
261 1 0.00
262 245 1.00
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (262 bp):
TGAACTCACCAATGCCATGCCTTGACATGGTCTTAAATGGTATCCTTGCTTTATGAACTCACCAA
TGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGACTTATAGTAACTCATCAATGCCATGTCT
TGACATGGTCTTACATGATTTCCTTGCCTTATAGGACTTATCAATGCCATGCCTTGGCATGGTCG
TACATGATATCCTTATCTTACCAAATGCCATGTTACAAACATGGTCTTACATGGTATCATTGTCT
TA
Found at i:32324759 original size:47 final size:47
Alignment explanation
Indices: 32324700--32324821 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
32324690 CATGCCTTGG
* * * *
32324700 CATGGTCGTACATGATATCCTTATCTTACTAAATGCCATGTTACAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTACAAA
*
32324747 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTACAAA
*
32324794 CATGGTATTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
32324822 GTGCCAATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTACAAA
Found at i:32332954 original size:68 final size:69
Alignment explanation
Indices: 32332882--32333029 Score: 162
Period size: 67 Copynumber: 2.2 Consensus size: 69
32332872 CATCATGTGC
* * * *
32332882 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
32332944 ATGTAG
64 ATGTAG
* ** * *
32332950 ACAAGAGAGCT--ATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
32333013 GTAG
66 GTAG
32333017 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
32333030 GAGATAAACT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 20 0.30
65 7 0.11
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (69 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
GTAG
Found at i:32351667 original size:40 final size:39
Alignment explanation
Indices: 32351623--32351834 Score: 343
Period size: 40 Copynumber: 5.3 Consensus size: 39
32351613 GCTCTTCGTT
* * *
32351623 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTT-TAGTAACTCGCA
32351663 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
32351703 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
*
32351743 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCA
*
32351782 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCC-GGTTTAGTAACTCGCA
32351822 CAAATGCCTTCGG
1 CAAATGCCTTCGG
32351835 ATCTTAGTCT
Statistics
Matches: 164, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
39 36 0.22
40 126 0.77
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCA
Found at i:32351810 original size:79 final size:79
Alignment explanation
Indices: 32351623--32351834 Score: 354
Period size: 79 Copynumber: 2.7 Consensus size: 79
32351613 GCTCTTCGTT
* * * *
32351623 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
32351688 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
32351703 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
32351768 A-TTAGTAACTCGCA
65 ATTTAGTAACTCGCA
32351782 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACAAATGCCTTCGG
1 CAAATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCACAAATGCCTTCGG
32351835 ATCTTAGTCT
Statistics
Matches: 126, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
79 65 0.52
80 58 0.46
81 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:32359436 original size:40 final size:40
Alignment explanation
Indices: 32359392--32359696 Score: 458
Period size: 40 Copynumber: 7.7 Consensus size: 40
32359382 GCTCCTCGTT
* * *
32359392 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
32359432 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
32359472 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
32359512 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
32359552 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
32359592 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
32359632 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
32359673 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
32359697 CAGCATTCAA
Statistics
Matches: 250, Mismatches: 10, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
39 19 0.08
40 222 0.89
41 9 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:32361909 original size:19 final size:19
Alignment explanation
Indices: 32361885--32361923 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32361875 TAATTTAGCT
32361885 AAAACTAAACCATCATCGG
1 AAAACTAAACCATCATCGG
*
32361904 AAAACTGAACCATCATCGG
1 AAAACTAAACCATCATCGG
32361923 A
1 A
32361924 CAGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.26, G:0.13, T:0.15
Consensus pattern (19 bp):
AAAACTAAACCATCATCGG
Found at i:32365257 original size:27 final size:26
Alignment explanation
Indices: 32365201--32365257 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
32365191 CAACCTTAGC
* * *
32365201 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
32365227 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
32365254 CCTA
1 CCTA
32365258 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:32365532 original size:13 final size:13
Alignment explanation
Indices: 32365504--32365546 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
32365494 ACTTATTGCC
*
32365504 TATTTTTTTATAT
1 TATTATTTTATAT
32365517 TATATATTTT-TAT
1 TAT-TATTTTATAT
32365530 TATTATTTTAT-T
1 TATTATTTTATAT
32365542 TATTA
1 TATTA
32365547 ACCCGTATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.44
13 10 0.37
14 5 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTATTTTATAT
Found at i:32365543 original size:15 final size:14
Alignment explanation
Indices: 32365504--32365546 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
32365494 ACTTATTGCC
32365504 TATTTTTTTA-TAT
1 TATTTTTTTATTAT
32365517 TATATATTTTTATTAT
1 TAT-T-TTTTTATTAT
32365533 TATTTTATTTATTA
1 TATTTT-TTTATTA
32365547 ACCCGTATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.12
14 3 0.12
15 14 0.54
16 6 0.23
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TATTTTTTTATTAT
Found at i:32372121 original size:47 final size:47
Alignment explanation
Indices: 32372043--32372251 Score: 301
Period size: 47 Copynumber: 4.4 Consensus size: 47
32372033 CCCTTCGGGA
* * * ** * * *
32372043 CTTATCACATTTATGCACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32372090 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32372137 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32372186 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32372233 CTTATCACATATATACACT
1 CTTATCACATATATACACT
32372252 GTCTTGGCTG
Statistics
Matches: 146, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 100 0.68
49 46 0.32
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32373010 original size:26 final size:26
Alignment explanation
Indices: 32372959--32373012 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
32372949 ACTCTTTTGA
*
32372959 CATATCCTTTTAGCACATCATAATAT
1 CATATCCATTTAGCACATCATAATAT
* *
32372985 CATATCCATTTGGCAACAT-ATCATAT
1 CATATCCATTTAGC-ACATCATAATAT
32373011 CA
1 CA
32373013 ATAACTTACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
CATATCCATTTAGCACATCATAATAT
Found at i:32375116 original size:17 final size:18
Alignment explanation
Indices: 32375083--32375116 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32375073 GCATAGTTTT
32375083 GGTTTATCGTGTGTTCTC
1 GGTTTATCGTGTGTTCTC
*
32375101 GGTTTAT-GTGTTTTCT
1 GGTTTATCGTGTGTTCT
32375117 ATTCATCTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.06, C:0.12, G:0.26, T:0.56
Consensus pattern (18 bp):
GGTTTATCGTGTGTTCTC
Found at i:32378279 original size:14 final size:13
Alignment explanation
Indices: 32378256--32378288 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
32378246 GAAATATCAA
32378256 AACAAGAATTAAG
1 AACAAGAATTAAG
32378269 AACACAGAATTAAG
1 AACA-AGAATTAAG
32378283 AACAAG
1 AACAAG
32378289 CCACATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.61, C:0.12, G:0.15, T:0.12
Consensus pattern (13 bp):
AACAAGAATTAAG
Found at i:32413745 original size:46 final size:46
Alignment explanation
Indices: 32413640--32413758 Score: 166
Period size: 46 Copynumber: 2.6 Consensus size: 46
32413630 TGTCTTCGAC
** * * *
32413640 ATGGACTTACATGAATTATACCTGTCCCCAATGCCATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCCCCAAAGCCATATATATAAT
* *
32413686 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCCCCAAAGCCATATATATAAT
*
32413732 ATGGACTTACATGGCTCATTTCTGTCC
1 ATGGACTTACATGGCTCATTCCTGTCC
32413759 TGTCCTGTCC
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCCCCAAAGCCATATATATAAT
Found at i:32418133 original size:28 final size:28
Alignment explanation
Indices: 32418097--32418171 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
32418087 TCAAATATGG
* *
32418097 CACTCAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
32418125 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
32418153 CACTTAGTGTGCAAAATAT
1 CACTTAGTGTGCGAAATAT
32418172 CGAATGATTC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:32432911 original size:10 final size:10
Alignment explanation
Indices: 32432893--32432936 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
32432883 AGATAAAAAC
*
32432893 GAAACAGAAA
1 GAAAAAGAAA
32432903 GAAAAAGAAA
1 GAAAAAGAAA
*
32432913 GAAAGA-AAA
1 GAAAAAGAAA
32432922 GAAAAAGGAAA
1 GAAAAA-GAAA
32432933 GAAA
1 GAAA
32432937 GGAAGGAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 8 0.28
10 14 0.48
11 7 0.24
ACGTcount: A:0.75, C:0.02, G:0.23, T:0.00
Consensus pattern (10 bp):
GAAAAAGAAA
Found at i:32432948 original size:20 final size:20
Alignment explanation
Indices: 32432900--32432937 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
32432890 AACGAAACAG
32432900 AAAGAAAAA-GAAAGAAAGA
1 AAAGAAAAAGGAAAGAAAGA
32432919 AAAGAAAAAGGAAAGAAAG
1 AAAGAAAAAGGAAAGAAAG
32432938 GAAGGAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (20 bp):
AAAGAAAAAGGAAAGAAAGA
Found at i:32433875 original size:41 final size:40
Alignment explanation
Indices: 32433830--32433943 Score: 99
Period size: 38 Copynumber: 2.9 Consensus size: 40
32433820 TTTCGAGTCG
*
32433830 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTAATTCA
1 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTAACT-A
* * * * ** * *
32433871 ATGAGGCACTAGGT-ACCAA-T-TTACTTCGGTTTAGCTG
1 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTAACTA
* *
32433908 ATGAGAAACTGGGTGTCAATTTATTACTTCGAATTA
1 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTA
32433944 TCCGATTAGG
Statistics
Matches: 53, Mismatches: 17, Indels: 7
0.69 0.22 0.09
Matches are distributed among these distances:
37 11 0.21
38 14 0.26
39 2 0.04
40 14 0.26
41 12 0.23
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (40 bp):
ATGAGACACTGGGTGTCAAATTATTACTTCGAATTAACTA
Found at i:32433959 original size:40 final size:39
Alignment explanation
Indices: 32433828--32433962 Score: 112
Period size: 40 Copynumber: 3.4 Consensus size: 39
32433818 GATTTCGAGT
* *
32433828 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTAATT
1 CGATGAGGCACTGGGTGTC-AATTATTACTTCGAATT-ATC
* * ** ** *
32433869 CAATGAGGCACTAGGTACCAA-T-TTACTTCGGTTTAGC
1 CGATGAGGCACTGGGTGTCAATTATTACTTCGAATTATC
* **
32433906 TGATGAGAAACTGGGTGTCAATTTATTACTTCGAATTATC
1 CGATGAGGCACTGGGTGTCAA-TTATTACTTCGAATTATC
*
32433946 CGATTAGGCACTGGGTG
1 CGATGAGGCACTGGGTG
32433963 CTAAACTGGT
Statistics
Matches: 68, Mismatches: 23, Indels: 7
0.69 0.23 0.07
Matches are distributed among these distances:
37 15 0.22
38 10 0.15
39 2 0.03
40 27 0.40
41 14 0.21
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGTCAATTATTACTTCGAATTATC
Found at i:32435435 original size:27 final size:28
Alignment explanation
Indices: 32435370--32435443 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
32435360 TCAAATATGG
* *
32435370 CACTCAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
32435398 CACTTAGTGTGCGAGATATTGAGAAT-A
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
32435425 CACTTAGTGTGCAAAATAT
1 CACTTAGTGTGCGAAATAT
32435444 CGAATGATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 18 0.44
28 23 0.56
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:32442172 original size:28 final size:28
Alignment explanation
Indices: 32442111--32442172 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
32442101 TCAGTGTACG
** * *
32442111 AAATATTGAGAATGGGACTTAGTGTGCG
1 AAATATTGAGAATGACAATTAGTGTGCA
* *
32442139 AGATATTGAGCATGACAATTAGTGTGCA
1 AAATATTGAGAATGACAATTAGTGTGCA
32442167 AAATAT
1 AAATAT
32442173 CGAATGATTC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACAATTAGTGTGCA
Found at i:32444174 original size:25 final size:25
Alignment explanation
Indices: 32444146--32444198 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
32444136 GGAATGAGTG
* *
32444146 TGCTGAACCATGTTTTATACAGTAA
1 TGCTGAACCACGTTTGATACAGTAA
*
32444171 TGCTGAACCGCGTTTGATACAGTAA
1 TGCTGAACCACGTTTGATACAGTAA
32444196 TGC
1 TGC
32444199 CTCATAACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (25 bp):
TGCTGAACCACGTTTGATACAGTAA
Found at i:32447268 original size:28 final size:29
Alignment explanation
Indices: 32447155--32447269 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
32447145 GTGAGCATGA
* *
32447155 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
32447183 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
32447212 ATAT-ACAGGTGATTTGGGCCTAATAGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
32447241 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
32447269 A
1 A
32447270 GATACAAGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 27 0.36
29 47 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:32453264 original size:40 final size:40
Alignment explanation
Indices: 32453209--32453391 Score: 303
Period size: 40 Copynumber: 4.6 Consensus size: 40
32453199 ATTTGAATAC
32453209 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
32453249 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
32453289 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
32453329 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
32453369 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
32453392 ATTGAGCTTG
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:32461514 original size:40 final size:40
Alignment explanation
Indices: 32461459--32461641 Score: 303
Period size: 40 Copynumber: 4.6 Consensus size: 40
32461449 ATTTGAATAC
32461459 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
32461499 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
32461539 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
32461579 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
32461619 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
32461642 ATTGAGCTTG
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:32463077 original size:16 final size:16
Alignment explanation
Indices: 32463056--32463090 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32463046 CAGCCGAAAT
32463056 GCCAAAAAGTCAAAAA
1 GCCAAAAAGTCAAAAA
* *
32463072 GCCAAAATGTCGAAAA
1 GCCAAAAAGTCAAAAA
32463088 GCC
1 GCC
32463091 GAAAGTTTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.23, G:0.17, T:0.09
Consensus pattern (16 bp):
GCCAAAAAGTCAAAAA
Found at i:32463227 original size:19 final size:18
Alignment explanation
Indices: 32463203--32463247 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
32463193 ATTTGGCCAT
32463203 ATGGGCCTCAATGGGCTAA
1 ATGGGCC-CAATGGGCTAA
*
32463222 ATGGGCCCGATGGGCT-A
1 ATGGGCCCAATGGGCTAA
*
32463239 TTGGGCCCA
1 ATGGGCCCA
32463248 TAATAGGCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 8 0.35
18 8 0.35
19 7 0.30
ACGTcount: A:0.20, C:0.24, G:0.36, T:0.20
Consensus pattern (18 bp):
ATGGGCCCAATGGGCTAA
Found at i:32463236 original size:18 final size:19
Alignment explanation
Indices: 32463203--32463238 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
32463193 ATTTGGCCAT
32463203 ATGGGCCTCAATGGGCTAA
1 ATGGGCCTCAATGGGCTAA
*
32463222 ATGGGCC-CGATGGGCTA
1 ATGGGCCTCAATGGGCTA
32463239 TTGGGCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.22, C:0.22, G:0.36, T:0.19
Consensus pattern (19 bp):
ATGGGCCTCAATGGGCTAA
Found at i:32463403 original size:29 final size:28
Alignment explanation
Indices: 32463318--32463419 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
32463308 TGAATCTGAC
**
32463318 TGGGCCTAACAGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATAT-AATGTGATT
* *
32463347 TGGGCCTAATGAGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATA-ATGTGATT
* *
32463376 TGGGCCTAATGGGCCTTATGAATATGA-T
1 TGGGCCTAATGGGCCATAT-AATGTGATT
* *
32463404 TGGTCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
32463420 GATACAAGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
28 15 0.25
29 44 0.73
30 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATAATGTGATT
Found at i:32467399 original size:44 final size:42
Alignment explanation
Indices: 32467260--32467412 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 42
32467250 CATACAATGC
* * **
32467260 CAACATCCCAGACGTGGTCTTACATGTAATCAAATATCGATG
1 CAACGTCCCAGACATGGTCTTACATAAAATCAAATATCGATG
* *
32467302 CCACTGTCCCAGACAGGGTCTTACATAAAATCAAATAT-GATG
1 CAAC-GTCCCAGACATGGTCTTACATAAAATCAAATATCGATG
* * *
32467344 CCGATGCCCCAGACATGGTCTTATACAT-AAATCATAA-ATCGATG
1 -CAACGTCCCAGACATGGTC-T-TACATAAAATCA-AATATCGATG
32467388 TCAACGTCCCAGACATGGTCTTACA
1 -CAACGTCCCAGACATGGTCTTACA
32467413 CGAAAACACA
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
42 24 0.26
43 40 0.44
44 27 0.30
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
CAACGTCCCAGACATGGTCTTACATAAAATCAAATATCGATG
Found at i:32478545 original size:40 final size:40
Alignment explanation
Indices: 32478501--32478724 Score: 292
Period size: 40 Copynumber: 5.6 Consensus size: 40
32478491 GCCACTAGCT
* *
32478501 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
32478541 CAAATGCCTTCGGGACTTAGCCCGGTA-TAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
32478580 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
32478620 CAAATGCCTTCAGGACTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* ** * *
32478660 CAAATGCCTTCGGAACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
32478700 CAAATG-CTCTCGGGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
32478725 TTATCATCCG
Statistics
Matches: 163, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.23
40 126 0.77
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:32485252 original size:27 final size:27
Alignment explanation
Indices: 32485222--32485399 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32485212 ATATTGAGTC
* * * *
32485222 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32485249 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32485276 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32485304 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32485331 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32485358 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32485385 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32485400 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32485361 original size:82 final size:81
Alignment explanation
Indices: 32485243--32485398 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32485233 TGCTATATAA
* *
32485243 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32485308 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32485325 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32485389 CACTTAGTGC
65 CACTTAGTGC
32485399 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32492019 original size:22 final size:22
Alignment explanation
Indices: 32491991--32492112 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
32491981 TTCCACATCC
32491991 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
32492013 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
32492037 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
32492060 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
32492084 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
32492107 ATCACA
1 ATCACA
32492113 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:32492026 original size:47 final size:47
Alignment explanation
Indices: 32491963--32492463 Score: 731
Period size: 47 Copynumber: 10.6 Consensus size: 47
32491953 CCCTTCGGGA
* * *
32491963 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
32492010 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
32492057 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
32492104 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
32492151 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
32492198 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
32492245 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
32492292 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
32492341 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
32492388 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
32492437 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
32492464 TATTCAAATA
Statistics
Matches: 428, Mismatches: 20, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 334 0.78
48 1 0.00
49 92 0.21
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:32493857 original size:85 final size:85
Alignment explanation
Indices: 32493736--32493906 Score: 333
Period size: 85 Copynumber: 2.0 Consensus size: 85
32493726 TGCCCATACC
32493736 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
32493801 ACATCTTGTCCACCCAAGCT
66 ACATCTTGTCCACCCAAGCT
32493821 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
*
32493886 ACATCTTGTCCACCCATGCT
66 ACATCTTGTCCACCCAAGCT
32493906 C
1 C
32493907 ATGGCCGGCC
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.27, C:0.26, G:0.08, T:0.38
Consensus pattern (85 bp):
CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
ACATCTTGTCCACCCAAGCT
Found at i:32493867 original size:41 final size:41
Alignment explanation
Indices: 32493737--32493867 Score: 101
Period size: 41 Copynumber: 3.1 Consensus size: 41
32493727 GCCCATACCC
32493737 TTTATTTTATTAATCCTTACATAATGCACTACCCCAACATG
1 TTTATTTTATTAATCCTTACATAATGCACTACCCCAACATG
* * * ** *
32493778 TTTATGACATGTT-TTTAGCCATAACATCTTGTC-C-A-CCCAAGC-TC
1 TTTAT----T-TTATTAATCC-TTACATAATG-CACTACCCCAA-CATG
32493822 TTTATTTTATTAATCCTTACATAATGCACTACCCCAACATG
1 TTTATTTTATTAATCCTTACATAATGCACTACCCCAACATG
32493863 TTTAT
1 TTTAT
32493868 GACATGTTTT
Statistics
Matches: 65, Mismatches: 12, Indels: 26
0.63 0.12 0.25
Matches are distributed among these distances:
38 1 0.02
39 10 0.15
40 8 0.12
41 16 0.25
44 11 0.17
45 8 0.12
46 10 0.15
47 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (41 bp):
TTTATTTTATTAATCCTTACATAATGCACTACCCCAACATG
Found at i:32501883 original size:48 final size:48
Alignment explanation
Indices: 32501790--32501910 Score: 152
Period size: 48 Copynumber: 2.5 Consensus size: 48
32501780 TGTACAATTC
* * *
32501790 ATGCAATATCCTAGACATGGTCTTATATAGGATCACATAACGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATAGGATCACATAACGATGCCA
* * * ** *
32501838 ATGCCATGTCCCAGACATGGTCTTACATGGGATCATATATTGATGCCG
1 ATGCCATATCCCAGACATGGTCTTACATAGGATCACATAACGATGCCA
*
32501886 ATGCCATATCCCAGATATGGTCTTA
1 ATGCCATATCCCAGACATGGTCTTA
32501911 TACGGGAGCT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTACATAGGATCACATAACGATGCCA
Found at i:32502029 original size:250 final size:250
Alignment explanation
Indices: 32501583--32502045 Score: 730
Period size: 250 Copynumber: 1.9 Consensus size: 250
32501573 CATGGTAGGG
* * *
32501583 TGCCAATGCCATATCCCGGATATGGTCTTATATGGGACCACTTATCAATGCCAATGCCATATCCC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCACTTATCAATGCCAATGCCATATCCC
* * * *
32501648 AAATTTTGTCTTATACGGGATCTCAACAACCCGAATATCATGATATGTAAGCCCTAAGTATTCCT
66 AAATATGGTCTTATACGGGAGCTCAACAACCCAAATATCATGATATGTAAGCCCTAAGTATTCCT
* ** * *
32501713 AACGTTCAATTGGCTTTCATCTCCTCAAATCTTCGTCGGACAACATCAATAATACTCACGAAGAC
131 AAAGTTCAACCGGCTTTCATCTCCTCAAATCTTCGTCAGACAACATCAATAATACTCACAAAGAC
32501778 AATGTACAATTCATGCAATATCCTAGACATGGTCTTATATAGGATCACATAACGA
196 AATGTACAATTCATGCAATATCCTAGACATGGTCTTATATAGGATCACATAACGA
* * ** *
32501833 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA-TATATTGATGCCGATGCCATATCC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCACT-TATCAATGCCAATGCCATATCC
* * *
32501897 CAGATATGGTCTTATACGGGAGCTTAACAACCCAAATATCATGATATGTATGCCCTAAGTATTCC
65 CAAATATGGTCTTATACGGGAGCTCAACAACCCAAATATCATGATATGTAAGCCCTAAGTATTCC
32501962 TAAAGTTCAACCGGCTTTCATCTCCTCAAATCTTCGTCAGACAACATCAATAATACTCACAAAGA
130 TAAAGTTCAACCGGCTTTCATCTCCTCAAATCTTCGTCAGACAACATCAATAATACTCACAAAGA
32502027 CAATGTACAATTCATGCAA
195 CAATGTACAATTCATGCAA
32502046 CATTAAGTGT
Statistics
Matches: 192, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
249 1 0.01
250 191 0.99
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.29
Consensus pattern (250 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCACTTATCAATGCCAATGCCATATCCC
AAATATGGTCTTATACGGGAGCTCAACAACCCAAATATCATGATATGTAAGCCCTAAGTATTCCT
AAAGTTCAACCGGCTTTCATCTCCTCAAATCTTCGTCAGACAACATCAATAATACTCACAAAGAC
AATGTACAATTCATGCAATATCCTAGACATGGTCTTATATAGGATCACATAACGA
Found at i:32511277 original size:19 final size:20
Alignment explanation
Indices: 32511253--32511290 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
32511243 GGTACCACCA
32511253 AAACAT-ATATCAT-ATCTTT
1 AAACATCAT-TCATCATCTTT
32511272 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
32511291 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:32511634 original size:46 final size:46
Alignment explanation
Indices: 32511514--32511641 Score: 154
Period size: 46 Copynumber: 2.8 Consensus size: 46
32511504 TAACCCGCCC
32511514 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * * * *
32511562 CTCA-CGAACTCAGACTCAACTCAACGAGTTCGGA-C-ATTTGCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
32511605 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32511642 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
43 6 0.09
44 2 0.03
45 2 0.03
46 28 0.41
47 28 0.41
48 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:32511660 original size:46 final size:45
Alignment explanation
Indices: 32511517--32511660 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
32511507 CCCGCCCCTA
32511517 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * * *
32511564 CA-CGAACTCAGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
32511610 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
32511656 AGTGA
1 AGTGA
32511661 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 32 0.42
47 30 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:32512098 original size:30 final size:30
Alignment explanation
Indices: 32512064--32512123 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
32512054 ATTTAATACG
32512064 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
32512094 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
32512124 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:32515540 original size:37 final size:37
Alignment explanation
Indices: 32515490--32515568 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32515480 TTATTACGAA
* * *
32515490 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32515527 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32515564 GTCTT
1 GTCTT
32515569 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32515765 original size:47 final size:47
Alignment explanation
Indices: 32515687--32516076 Score: 663
Period size: 47 Copynumber: 8.3 Consensus size: 47
32515677 CCCTTCGGGA
* * * * * *
32515687 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32515734 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32515781 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32515828 CTTATCACATATATGCACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32515875 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32515922 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32515969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32516016 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32516063 CTTATCTCATATAT
1 CTTATCACATATAT
32516077 GCATGTTCAC
Statistics
Matches: 326, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 326 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32522741 original size:19 final size:20
Alignment explanation
Indices: 32522717--32522754 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
32522707 GGTACCACCA
32522717 AAACAT-ATATCAT-ATCTTT
1 AAACATCAT-TCATCATCTTT
32522736 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
32522755 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:32523094 original size:93 final size:93
Alignment explanation
Indices: 32522984--32523154 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
32522974 GCCCCTAAGT
***
32522984 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
32523049 CAAGTTCGGATGCCTAGTTAGATCTCAC
66 CAAGTTCGGATGCCTAGTTAGATCTCAC
* ** *
32523077 GAACTCGGACTCAACTCAACGAGTTCGGACATTTTCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
32523142 CGAGTTCGGATGC
66 CAAGTTCGGATGC
32523155 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTAGATCTCAC
Found at i:32523143 original size:46 final size:46
Alignment explanation
Indices: 32522979--32523151 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
32522969 AACCCGCCCC
* *** **
32522979 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
* * * *
32523025 TAAATGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTAGAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACATCCA
* * *
32523073 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTTCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
32523118 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32523152 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 59 0.58
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
Found at i:32523608 original size:30 final size:30
Alignment explanation
Indices: 32523574--32523633 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
32523564 ATTTAATACG
32523574 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
32523604 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
32523634 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:32528710 original size:39 final size:40
Alignment explanation
Indices: 32528544--32528748 Score: 326
Period size: 40 Copynumber: 5.2 Consensus size: 40
32528534 GGACTAAGAT
32528544 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
32528584 CCGAAGGCATTTGTGCTGGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
32528624 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
32528664 CCGAAGGCATTTGTGCTAGTGATTATATCC-AGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
32528703 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
32528742 CCGAAGG
1 CCGAAGG
32528749 TACTTGGGTT
Statistics
Matches: 154, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 47 0.31
40 107 0.69
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:32530793 original size:43 final size:43
Alignment explanation
Indices: 32530732--32530817 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
32530722 CCTACTATTG
32530732 GTGGAATACGTTGATTTCTGTTGTGCCCAGAGAGCAAGTAACT
1 GTGGAATACGTTGATTTCTGTTGTGCCCAGAGAGCAAGTAACT
32530775 GTGGAATACGTTGATTTCTGTTGTGCCCAGAGAGCAAGTAACT
1 GTGGAATACGTTGATTTCTGTTGTGCCCAGAGAGCAAGTAACT
32530818 TGGGAGTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
GTGGAATACGTTGATTTCTGTTGTGCCCAGAGAGCAAGTAACT
Found at i:32534997 original size:13 final size:13
Alignment explanation
Indices: 32534979--32535006 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32534969 ACATATTATA
32534979 AATATTTTGTGTT
1 AATATTTTGTGTT
32534992 AATATTTTGTGTT
1 AATATTTTGTGTT
32535005 AA
1 AA
32535007 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:32536471 original size:40 final size:40
Alignment explanation
Indices: 32536423--32536588 Score: 255
Period size: 40 Copynumber: 4.2 Consensus size: 40
32536413 GGACTAAGAT
*
32536423 CCGAAGGCATTTGTGCTAGTGACTATATCCGGCCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
32536463 CCGAAGGCATTTATGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
32536503 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
32536543 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
32536582 CCGAAGG
1 CCGAAGG
32536589 TACTTGGGTT
Statistics
Matches: 116, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 15 0.13
40 99 0.85
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:32539568 original size:49 final size:48
Alignment explanation
Indices: 32539508--32539634 Score: 209
Period size: 49 Copynumber: 2.6 Consensus size: 48
32539498 ATAAGGAAAG
* *
32539508 AGAATTTAATTATTATTTAAAAGAGTTTTAGATAAATGATAATTAAAAT
1 AGAATTTAATTATTATTTAAAAGAGTTTTAAATAAAGGATAATT-AAAT
*
32539557 AGAATTTAATTATTATTTACAAGAGTTTTAAATAAAGGATAATTAAAT
1 AGAATTTAATTATTATTTAAAAGAGTTTTAAATAAAGGATAATTAAAT
32539605 AGAATTTAAATTATTATTTAAAAGAGTTTT
1 AGAATTT-AATTATTATTTAAAAGAGTTTT
32539635 TAGAATTCAG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 11 0.15
49 62 0.85
ACGTcount: A:0.47, C:0.01, G:0.10, T:0.42
Consensus pattern (48 bp):
AGAATTTAATTATTATTTAAAAGAGTTTTAAATAAAGGATAATTAAAT
Found at i:32546743 original size:24 final size:25
Alignment explanation
Indices: 32546716--32546775 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 25
32546706 CAGTCAGAAG
32546716 CAGATACA-ATTCCAGATTCAAAAT-
1 CAGATACAGA-TCCAGATTCAAAATA
*
32546740 CAGAT-CTAGATCCAGATTCAAATTA
1 CAGATAC-AGATCCAGATTCAAAATA
32546765 CAGATACAGAT
1 CAGATACAGAT
32546776 ATGCATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
23 1 0.03
24 19 0.61
25 10 0.32
26 1 0.03
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (25 bp):
CAGATACAGATCCAGATTCAAAATA
Found at i:32548432 original size:48 final size:48
Alignment explanation
Indices: 32548372--32548640 Score: 240
Period size: 48 Copynumber: 5.6 Consensus size: 48
32548362 TATGTGTGCT
*
32548372 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACAATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
* * * * *** *
32548420 AGTATAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
* * * *** * *
32548467 AGTGTAAGACCATATCCGGGACATGGCATCAG-CATTGT-TAAGTGCGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC-C
* * * * *
32548514 TAGTGTAAGACCATGTCTAGGACATGGCAACGACCACATTATGAGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
* * * * *
32548563 AGTGTAAGACCATGTCTGGGATATGGCATCGGGCTCGACATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATG-AGAGCC
32548611 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
32548641 AGCAATTTAC
Statistics
Matches: 171, Mismatches: 44, Indels: 12
0.75 0.19 0.05
Matches are distributed among these distances:
45 4 0.02
46 3 0.02
47 26 0.15
48 129 0.75
49 4 0.02
50 5 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
Found at i:32578541 original size:48 final size:48
Alignment explanation
Indices: 32578432--32578767 Score: 539
Period size: 48 Copynumber: 7.0 Consensus size: 48
32578422 CAAGATAAAT
* *
32578432 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAAT-TGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
32578479 ATATGTATATGTGGTATAGTCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
32578527 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
32578575 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
32578623 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
32578671 ATATGTATATGTGGTAAAGCCGAATGACTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
32578719 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
32578767 A
1 A
32578768 GGTGTGTATA
Statistics
Matches: 267, Mismatches: 21, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
47 34 0.13
48 233 0.87
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:32578959 original size:37 final size:37
Alignment explanation
Indices: 32578909--32579011 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
32578899 GGAAATATAT
32578909 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
32578946 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
32578983 TCCGAGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
32579012 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:32581803 original size:93 final size:93
Alignment explanation
Indices: 32581695--32581865 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
32581685 ACCCATAAGT
* * * * *
32581695 GAACTCGGACTCAACTCAACGAGCTCGACCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
32581760 CGAGCTCGGATGCCTAGTTACATCTTAC
66 CGAGCTCGGATGCCTAGTTACATCTTAC
*
32581788 GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
*
32581853 CGAGTTCGGATGC
66 CGAGCTCGGATGC
32581866 TAAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACCCAA
CGAGCTCGGATGCCTAGTTACATCTTAC
Found at i:32581860 original size:46 final size:45
Alignment explanation
Indices: 32581687--32581856 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 45
32581677 TGTAACCCAC
*
32581687 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGACCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGACC-ATTGCAT
*
32581733 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA--CC-A-TTGCAT
* * * * *
32581783 -C-TTA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGACCATT-GCAT
*
32581826 CCATAAGTGAACTCGGACTCAACCCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
32581857 TTCGGATGCT
Statistics
Matches: 103, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 57 0.55
47 26 0.25
48 2 0.02
49 3 0.03
50 5 0.05
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGACCATTGCAT
Found at i:32582453 original size:20 final size:18
Alignment explanation
Indices: 32582419--32582455 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
32582409 GCAACTCATA
32582419 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
32582437 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
32582456 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:32586473 original size:37 final size:37
Alignment explanation
Indices: 32586414--32586522 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
32586404 AGCTCAGACG
* *
32586414 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
32586451 AAATCTCCACAAGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
32586488 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
32586523 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:32586791 original size:48 final size:48
Alignment explanation
Indices: 32586667--32586949 Score: 426
Period size: 48 Copynumber: 5.8 Consensus size: 48
32586657 GCACATCGCC
*
32586667 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
32586717 TATATATTTCACATT-GACCATTCGGCTTTACCAAATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
32586765 TACATATTTCACATTGGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
32586815 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
32586863 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
32586911 TACACATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
32586950 TGCATGTTCA
Statistics
Matches: 215, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
48 126 0.59
49 4 0.02
50 85 0.40
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:32586794 original size:98 final size:98
Alignment explanation
Indices: 32586667--32586954 Score: 483
Period size: 98 Copynumber: 2.9 Consensus size: 98
32586657 GCACATCGCC
*
32586667 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
32586732 GACCATTCGGCTTTACCAAATATGCATATCTCA
66 GACCATTCGGCTTTACCAAATATGCATATCTCA
*
32586765 TACATATTTCACATTGGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
*
32586830 GACCATTCGGCTTTACCACATATGCATATCTCA
66 GACCATTCGGCTTTACCAAATATGCATATCTCA
* *
32586863 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACACATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
32586926 -AGCCATTCGGCTTTACCACATATATGCAT
66 GA-CCATTCGGCTTTACCA-A-ATATGCAT
32586955 GTTCATATTC
Statistics
Matches: 180, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
95 1 0.01
96 30 0.17
98 149 0.83
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.36
Consensus pattern (98 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
GACCATTCGGCTTTACCAAATATGCATATCTCA
Found at i:32586998 original size:47 final size:47
Alignment explanation
Indices: 32586919--32587222 Score: 304
Period size: 47 Copynumber: 6.1 Consensus size: 47
32586909 CATACACATT
* * * *
32586919 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
32586966 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
32587013 TCAAATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
32587060 TCACATTGGCCATTTGGCCTTATCACATATATGCCT-TATCACATATATGCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TCAC--AT-T-CA
**
32587111 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 ---TCACATT-GGC-CATT---C----GGCCTTATCACATATATGCATGTTCACATTCA
* * **
32587170 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
32587217 TCACAT
1 TCACAT
32587223 AAAATCCTAA
Statistics
Matches: 215, Mismatches: 24, Indels: 36
0.78 0.09 0.13
Matches are distributed among these distances:
46 1 0.00
47 154 0.72
49 2 0.01
50 1 0.00
51 3 0.01
54 11 0.05
55 2 0.01
56 11 0.05
59 2 0.01
60 1 0.00
61 2 0.01
63 24 0.11
64 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:32587097 original size:16 final size:16
Alignment explanation
Indices: 32587076--32587109 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
32587066 TGGCCATTTG
32587076 GCCTTATCACATATAT
1 GCCTTATCACATATAT
32587092 GCCTTATCACATATAT
1 GCCTTATCACATATAT
32587108 GC
1 GC
32587110 ATGTTCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.35
Consensus pattern (16 bp):
GCCTTATCACATATAT
Found at i:32587102 original size:63 final size:63
Alignment explanation
Indices: 32587029--32587156 Score: 247
Period size: 63 Copynumber: 2.0 Consensus size: 63
32587019 TGGCCATTCG
*
32587029 GCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAT
1 GCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
32587092 GCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
1 GCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
32587155 GC
1 GC
32587157 ATGTTCACAT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (63 bp):
GCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
Found at i:32587118 original size:110 final size:110
Alignment explanation
Indices: 32586982--32587201 Score: 395
Period size: 110 Copynumber: 2.0 Consensus size: 110
32586972 TGGCCATTCG
32586982 GCCTTATCACACATATGCATGCTCACATTCATCAAATTGGCCATTCGGCCTTATCACATATATGC
1 GCCTTATCACACATATGCATGCTCACATTCATCAAATTGGCCATTCGGCCTTATCACATATATGC
*
32587047 ATGTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAT
66 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
* * *
32587092 GCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGC
1 GCCTTATCACACATATGCATGCTCACATTCATCAAATTGGCCATTCGGCCTTATCACATATATGC
*
32587157 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATAT
66 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
32587202 ACACATTCAC
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
110 105 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (110 bp):
GCCTTATCACACATATGCATGCTCACATTCATCAAATTGGCCATTCGGCCTTATCACATATATGC
ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
Found at i:32587150 original size:22 final size:22
Alignment explanation
Indices: 32587122--32587193 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
32587112 GTTCACATTC
32587122 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
32587144 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
32587168 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
32587191 ATC
1 ATC
32587194 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:32592822 original size:18 final size:18
Alignment explanation
Indices: 32592799--32592834 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
32592789 TTTTAGGAGA
32592799 TTGTTAAGGGAATTTCGG
1 TTGTTAAGGGAATTTCGG
*
32592817 TTGTTAAGGGGATTTCGG
1 TTGTTAAGGGAATTTCGG
32592835 GAGTGATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.36, T:0.39
Consensus pattern (18 bp):
TTGTTAAGGGAATTTCGG
Found at i:32594155 original size:27 final size:27
Alignment explanation
Indices: 32594125--32594464 Score: 422
Period size: 27 Copynumber: 12.8 Consensus size: 27
32594115 CCTTAATCGA
* *
32594125 TAAAATGACTATTTTCCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
32594152 TAAAATGACTG--TTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
* *
32594177 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
*
32594204 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
* *
32594231 TAAAATGAC---TTT-CTCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
* * * *
32594254 TAAAATGACTCTTTTTCCCTTATGTGA
1 TAAAATGACTGTTTTGCCCTTATGGGG
* *
32594281 TAAAATGACTGTTTTGCTCTTATGGGAA
1 TAAAATGACTGTTTTGCCCTTATGGG-G
* *
32594309 TAAAATGATTGTTTTGCCCTTATGGGA
1 TAAAATGACTGTTTTGCCCTTATGGGG
32594336 TAAAATGACTGTTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
*
32594363 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
* *
32594390 TAAAATGATTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
* * *
32594417 TAAAATGACTATTTTGCCCTTTTGTGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
**
32594444 TAAAATGGTTGTTTTGCCCTT
1 TAAAATGACTGTTTTGCCCTT
32594465 TTTATGGTAA
Statistics
Matches: 279, Mismatches: 27, Indels: 14
0.87 0.08 0.04
Matches are distributed among these distances:
23 19 0.07
24 3 0.01
25 23 0.08
26 3 0.01
27 206 0.74
28 25 0.09
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGGGG
Found at i:32594842 original size:12 final size:12
Alignment explanation
Indices: 32594825--32594854 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
32594815 ACTGTTACTG
32594825 CACTGTTTATTA
1 CACTGTTTATTA
32594837 CACTGTTTATTA
1 CACTGTTTATTA
32594849 CTACTG
1 C-ACTG
32594855 CACTGTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.47
Consensus pattern (12 bp):
CACTGTTTATTA
Found at i:32606726 original size:50 final size:48
Alignment explanation
Indices: 32606579--32606753 Score: 192
Period size: 50 Copynumber: 3.5 Consensus size: 48
32606569 CTGGTATGCA
* * *
32606579 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-ACAGTCTGGTACACG
**
32606628 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CA-CAGTCTGGTACACG
* * *
32606678 TAGTAGCCTGCACTTAGTACTACA-ACGTGATCACAGTTTTCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCACAG---TCTGGTACACG
*
32606728 TATTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
32606754 TGCGACCTCA
Statistics
Matches: 107, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
46 2 0.02
47 2 0.02
49 35 0.33
50 64 0.60
51 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCACAGTCTGGTACACG
Found at i:32606751 original size:100 final size:99
Alignment explanation
Indices: 32606579--32606764 Score: 250
Period size: 100 Copynumber: 1.9 Consensus size: 99
32606569 CTGGTATGCA
* * **
32606579 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
32606644 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * *
32606678 TAGTAGCCTGCACTTAGTACTACA-ACGTGATC-ACAGTTTTCGGGTACACATATTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
32606741 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
32606765 AATAGATCAT
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
97 4 0.05
98 5 0.07
99 24 0.32
100 42 0.56
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:32612211 original size:43 final size:43
Alignment explanation
Indices: 32612159--32612356 Score: 333
Period size: 43 Copynumber: 4.6 Consensus size: 43
32612149 TCGGCATTAC
32612159 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
* * *
32612202 GCCTGCTAGGCACGAAGGCCCTAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
* *
32612245 GCCTGCTAGGCACGAAAGCTCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
* *
32612288 GCCTGCTAGGAACGAAGGCTCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
32612331 GCCTGCTAGGCACGAAGGCTCGAATA
1 GCCTGCTAGGCACGAAGGCTCGAATA
32612357 TAATACCAGC
Statistics
Matches: 144, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 144 1.00
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
Found at i:32612403 original size:38 final size:38
Alignment explanation
Indices: 32612351--32612434 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
32612341 CACGAAGGCT
* * *
32612351 CGAATATAATACCAGCACTAGGCCTGCGGGATTTATCC
1 CGAATATAATACCAGCACGAAGCCTGCGGGATTTAACC
* *
32612389 CGGATATAATACCAGCACGAAGCCTGTGGGATTTAACC
1 CGAATATAATACCAGCACGAAGCCTGCGGGATTTAACC
32612427 CGAATATA
1 CGAATATA
32612435 CATCAAATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (38 bp):
CGAATATAATACCAGCACGAAGCCTGCGGGATTTAACC
Found at i:32615038 original size:49 final size:49
Alignment explanation
Indices: 32614966--32615152 Score: 189
Period size: 50 Copynumber: 3.8 Consensus size: 49
32614956 GCCGAAGCTA
* * *
32614966 TCTGGTACGCATAGTAGCGTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
32615015 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAG
** * * * *
32615065 TCTAATACACGTAGTAGCCTGCACTTAGTACTGCACACGTGATC-ACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* *
32615113 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
32615153 TGCAACCTCA
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 37 0.32
50 40 0.35
51 35 0.30
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
Found at i:32618691 original size:28 final size:27
Alignment explanation
Indices: 32618628--32618779 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
32618618 ATATTAAGTC
* * *
32618628 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
32618655 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
32618683 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
32618710 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
32618738 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
32618765 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32618780 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:32618712 original size:55 final size:55
Alignment explanation
Indices: 32618628--32618779 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
32618618 ATATTAAGTC
* * *
32618628 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32618683 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32618738 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
32618780 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32626734 original size:28 final size:27
Alignment explanation
Indices: 32626671--32626822 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
32626661 ATATTAAGTC
* * *
32626671 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
32626698 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
32626726 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
32626753 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
32626781 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
32626808 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32626823 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:32626755 original size:55 final size:55
Alignment explanation
Indices: 32626671--32626822 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
32626661 ATATTAAGTC
* * *
32626671 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32626726 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
32626781 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
32626823 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32630272 original size:27 final size:27
Alignment explanation
Indices: 32630242--32630419 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32630232 ATATTGAGTC
* * * *
32630242 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32630269 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32630296 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32630324 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32630351 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32630378 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32630405 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32630420 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32630381 original size:82 final size:81
Alignment explanation
Indices: 32630263--32630418 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32630253 TGCTATATAA
* *
32630263 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32630328 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32630345 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32630409 CACTTAGTGC
65 CACTTAGTGC
32630419 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32637748 original size:27 final size:27
Alignment explanation
Indices: 32637731--32637881 Score: 128
Period size: 27 Copynumber: 5.6 Consensus size: 27
32637721 ATATTAAGTC
32637731 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
32637758 CGCACACTTAGTGCTA-CTAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
32637785 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
32637812 CGCACATTTAGT-CTACATTAGTCAAACT
1 CGCACACTCAGTGCTATA-TAATC-AACT
* * *
32637840 CGCACACTTAGTGCTACAT-ATCAAATT
1 CGCACACTCAGTGCTATATAATC-AACT
*
32637867 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
32637882 GCACAATTTA
Statistics
Matches: 111, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
26 10 0.09
27 76 0.68
28 20 0.18
29 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:32637854 original size:55 final size:53
Alignment explanation
Indices: 32637731--32637881 Score: 205
Period size: 55 Copynumber: 2.8 Consensus size: 53
32637721 ATATTAAGTC
* *
32637731 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACTAATCAAACT
1 CGCACACTTAGTGCTACAT-ATCAACTCGCACACTTAGTGCTACTAATCAAACT
* *
32637785 CGCACACTTAGTGCTACATAGTCAACTCGCACATTTAGT-CTACATTAGTCAAACT
1 CGCACACTTAGTGCTACATA-TCAACTCGCACACTTAGTGCTAC--TAATCAAACT
*
32637840 CGCACACTTAGTGCTACATATCAAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATATC-AACTCGCACACTTAGTGCT
32637882 GCACAATTTA
Statistics
Matches: 86, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
53 5 0.06
54 36 0.42
55 43 0.50
56 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (53 bp):
CGCACACTTAGTGCTACATATCAACTCGCACACTTAGTGCTACTAATCAAACT
Found at i:32654539 original size:79 final size:80
Alignment explanation
Indices: 32654441--32654623 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
32654431 TACCCGTTCA
* *
32654441 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
32654504 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
32654521 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
32654585 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
32654600 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
32654624 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:32654623 original size:40 final size:40
Alignment explanation
Indices: 32654439--32654623 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
32654429 GCTACCCGTT
* *
32654439 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32654479 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
32654519 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
32654558 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
32654599 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32654624 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:32658439 original size:21 final size:21
Alignment explanation
Indices: 32658415--32658454 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
32658405 ATCCAAATTA
32658415 TTCAACGGGATGGTTTTGTTG
1 TTCAACGGGATGGTTTTGTTG
32658436 TTCAACGGGATGGTTTTGT
1 TTCAACGGGATGGTTTTGT
32658455 GGTGACATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.10, G:0.33, T:0.42
Consensus pattern (21 bp):
TTCAACGGGATGGTTTTGTTG
Found at i:32663119 original size:27 final size:26
Alignment explanation
Indices: 32663048--32663162 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
32663038 TGGAGGAAGC
32663048 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
32663075 ATTTCTGGTGGCTATGCCACAAATATCT
1 -GTTCTGGTGGCTATGCCAC-AATATCT
*
32663103 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
32663129 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
*
32663156 ATTCTGG
1 GTTCTGG
32663163 CAGCCATGCT
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
26 14 0.17
27 40 0.50
28 26 0.32
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:32665392 original size:49 final size:49
Alignment explanation
Indices: 32665257--32665380 Score: 214
Period size: 49 Copynumber: 2.5 Consensus size: 49
32665247 TGAGGTCACT
*
32665257 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACC-GAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATTGGTCGCA
*
32665306 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
32665355 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
32665381 TGCATACCAG
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
49 71 0.99
50 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:32666417 original size:39 final size:39
Alignment explanation
Indices: 32666314--32666427 Score: 122
Period size: 39 Copynumber: 2.9 Consensus size: 39
32666304 TTCAGTGATG
** * *
32666314 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
**
32666353 TATATCCGGACTTAAAGTCTACAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
* * * *
32666392 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGG
1 TATATCCGGACTTAAAGT-CCGCAGGCTACGTGCTGG
32666428 TATTATACCG
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
38 6 0.10
39 56 0.90
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
Found at i:32670971 original size:43 final size:43
Alignment explanation
Indices: 32670917--32671158 Score: 403
Period size: 43 Copynumber: 5.6 Consensus size: 43
32670907 GCTGGTATTA
* *
32670917 TATTCGGGCCTTCGTGCCTAGTAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
**
32670960 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
*
32671003 TATTCGGGCCTTCGTGCCTAGTAGGCTTAGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
* * *
32671046 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCAAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
*
32671089 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
32671132 TATTCGGGCCTTCGTGCCTAGCAGGCT
1 TATTCGGGCCTTCGTGCCTAGCAGGCT
32671159 AATGCTGGTG
Statistics
Matches: 188, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 188 1.00
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
Found at i:32671019 original size:86 final size:86
Alignment explanation
Indices: 32670898--32671169 Score: 433
Period size: 86 Copynumber: 3.2 Consensus size: 86
32670888 TAAATCCCGT
* * *
32670898 AGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTAGTAGGCTTAGTGCCGGTGATGTGT
1 AGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTAGTGCCAGTGATGTGT
32670961 ATTCGGGCCTTCGTGCCTAGC
66 ATTCGGGCCTTCGTGCCTAGC
32670982 AGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTAGTGCCAGTGATGTGT
1 AGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTAGTGCCAGTGATGTGT
*
32671047 ATTCGGGCCTTTGTGCCTAGC
66 ATTCGGGCCTTCGTGCCTAGC
* ** * *
32671068 AGGCTTCGTGCAAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGT
1 AGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTAGTGCCAGTGATGTGT
32671133 ATTCGGGCCTTCGTGCCTAGC
66 ATTCGGGCCTTCGTGCCTAGC
*
32671154 AGGC-TAATGCTGGTGA
1 AGGCTTAGTGCTGGTGA
32671170 AATGATATGT
Statistics
Matches: 172, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
84 14 0.08
85 10 0.06
86 148 0.86
ACGTcount: A:0.14, C:0.22, G:0.33, T:0.32
Consensus pattern (86 bp):
AGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTAGTGCCAGTGATGTGT
ATTCGGGCCTTCGTGCCTAGC
Found at i:32671553 original size:45 final size:42
Alignment explanation
Indices: 32671484--32671593 Score: 123
Period size: 45 Copynumber: 2.5 Consensus size: 42
32671474 TGTTGACTTG
* *
32671484 ATTATTCGGGCCTTTGAGCTTAGCAAACTATAATGCAGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAAACTATAATGCAGGTGA
** *
32671526 GATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 -AT--TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCAGGTGA
32671571 ATTGATATCGGGCC-TCGAGCCTA
1 ATT-AT-TCGGGCCTTCGAGCCTA
32671594 ACAGGCGAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
42 1 0.02
43 13 0.22
44 9 0.16
45 35 0.60
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (42 bp):
ATTATTCGGGCCTTCGAGCCTAGCAAACTATAATGCAGGTGA
Found at i:32671599 original size:43 final size:43
Alignment explanation
Indices: 32671534--32671617 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 43
32671524 GAGATACTAT
* *
32671534 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAATTGATA
1 TCGGGCCTTCGAGCCTAACAGGCGA-AATGCCGGTGAATTGATA
*
32671578 TCGGGCC-TCGAGCCTAACAGGCGAAATGCCGGTGATTTGA
1 TCGGGCCTTCGAGCCTAACAGGCGAAATGCCGGTGAATTGA
32671618 GAAAAGTCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 15 0.41
43 15 0.41
44 7 0.19
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.23
Consensus pattern (43 bp):
TCGGGCCTTCGAGCCTAACAGGCGAAATGCCGGTGAATTGATA
Found at i:32674342 original size:15 final size:15
Alignment explanation
Indices: 32674322--32674366 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
32674312 TATCGTATCT
32674322 TGGGTTTCTTTATTC
1 TGGGTTTCTTTATTC
*
32674337 TGGGTTTCTCTA-TC
1 TGGGTTTCTTTATTC
*
32674351 TAGGATTTCTTTATTC
1 T-GGGTTTCTTTATTC
32674367 AGTTTTCTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 3 0.12
15 20 0.80
16 2 0.08
ACGTcount: A:0.11, C:0.16, G:0.18, T:0.56
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:32678755 original size:40 final size:40
Alignment explanation
Indices: 32678524--32678748 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
32678514 TCGAATGATG
* * * *
32678524 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
32678564 TCCGGACTACGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32678604 TCCGGGCTAAG-CCCGAAGGCGTTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32678643 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32678683 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32678724 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32678749 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.21
40 114 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32678755 original size:80 final size:77
Alignment explanation
Indices: 32678531--32678781 Score: 238
Period size: 79 Copynumber: 3.2 Consensus size: 77
32678521 ATGTCCGGGC
* * * * * *
32678531 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTACGAT-CCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCTTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCGA
* *
32678595 GATACTAATTCCGGGC
64 G-TACTAAATCC-GGT
* * *
32678611 TAAG-CCCGAAGGCGTTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCAAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGC-TTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
32678674 GTTACTAAATCCAGGT
64 G-TACTAAATCC-GGT
* **
32678690 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGC-TTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
32678755 TAGCTATATCCGGT
65 TA-CTAAATCCGGT
* *
32678769 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
32678782 TACGTGATTT
Statistics
Matches: 142, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.01
79 71 0.50
80 67 0.47
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
TAAGTCCCGAAGGCTTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
ACTAAATCCGGT
Found at i:32686720 original size:40 final size:40
Alignment explanation
Indices: 32686572--32686796 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
32686562 TCGAATGATG
* * * * *
32686572 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
32686612 TCCGGACTACGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32686652 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32686691 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32686731 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32686772 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32686797 AATGAGTAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.20
40 118 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32686814 original size:80 final size:79
Alignment explanation
Indices: 32686628--32686819 Score: 219
Period size: 80 Copynumber: 2.4 Consensus size: 79
32686618 CTACGATCCA
** * * * *
32686628 AAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
*
32686693 CGGGTTAAGTCCCG
66 CGGGCTAAGTCCCG
** *
32686707 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
*
32686772 -CCGGGCTATGTCCCG
64 TCCGGGCTAAGTCCCG
* *
32686787 AAGGCATTTGAATGAG-TAGCTATATCC-GGTTAA
1 AAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAA
32686820 ATTCCAAAGG
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
79 39 0.39
80 58 0.59
81 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (79 bp):
AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
CGGGCTAAGTCCCG
Done.