Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 104 of 255
Found at i:32691972 original size:27 final size:26
Alignment explanation
Indices: 32691902--32691991 Score: 117
Period size: 28 Copynumber: 3.3 Consensus size: 26
32691892 GGCGGAAGCC
*
32691902 TTCTGGTGGCTATGCCACAAATATCTAT
1 TTCTGGTGGCTATGCCA-AAATATCT-G
32691930 TTCTGGTGGCTATGCCATAAATATCTG
1 TTCTGGTGGCTATGCCA-AAATATCTG
* *
32691957 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTATGCCAAAATATCTG
32691983 TATCTGGTG
1 T-TCTGGTG
32691992 ACTCTGTCAC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 9 0.16
27 23 0.40
28 25 0.44
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCAAAATATCTG
Found at i:32691996 original size:27 final size:26
Alignment explanation
Indices: 32691902--32692008 Score: 124
Period size: 27 Copynumber: 4.0 Consensus size: 26
32691892 GGCGGAAGCC
*
32691902 TTCTGGTGGCTATGCCACAAATATCTAT
1 TTCTGGTGGCTATGCCAC-AATATCT-G
*
32691930 TTCTGGTGGCTATGCCATAAATATCTG
1 TTCTGGTGGCTATGCCA-CAATATCTG
*
32691957 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTG
* * *
32691983 TATCTGGTGACTCTGTCACAATATCT
1 T-TCTGGTGGCTATGCCACAATATCT
32692009 ATTATGGTAG
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 9 0.13
27 38 0.54
28 24 0.34
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTG
Found at i:32703911 original size:14 final size:16
Alignment explanation
Indices: 32703887--32703919 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
32703877 ATTTTCAGTG
32703887 TTTATTATGTGT-GAA
1 TTTATTATGTGTGGAA
32703902 TTTA-TATGTGTGGAA
1 TTTATTATGTGTGGAA
32703917 TTT
1 TTT
32703920 TCGTGTCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGGAA
Found at i:32704747 original size:15 final size:15
Alignment explanation
Indices: 32704727--32704757 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32704717 GTGAAAATAT
32704727 GTTTGAATAAGTTTA
1 GTTTGAATAAGTTTA
*
32704742 GTTTGAATATGTTTA
1 GTTTGAATAAGTTTA
32704757 G
1 G
32704758 ATCAAGAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (15 bp):
GTTTGAATAAGTTTA
Found at i:32712941 original size:27 final size:28
Alignment explanation
Indices: 32712911--32713012 Score: 120
Period size: 27 Copynumber: 3.8 Consensus size: 28
32712901 ACCCCGATTC
*
32712911 GTAAAATTACCGAAATACCCCCTA-TTT
1 GTAAAATTATCGAAATACCCCCTACTTT
* * *
32712938 GTAAAATTATCAAAATA-CCTCTACATT
1 GTAAAATTATCGAAATACCCCCTACTTT
* *
32712965 GTAAAATTATCGAAATACCCTC-AGTTT
1 GTAAAATTATCGAAATACCCCCTACTTT
*
32712992 GTAAAATTAGCGAAATACCCC
1 GTAAAATTATCGAAATACCCC
32713013 TGTAGGGTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.08
27 55 0.86
28 4 0.06
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (28 bp):
GTAAAATTATCGAAATACCCCCTACTTT
Found at i:32713022 original size:27 final size:27
Alignment explanation
Indices: 32712965--32713025 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
32712955 CCTCTACATT
* **
32712965 GTAAAATTATCGAAATACCCTCAGTTT
1 GTAAAATTAGCGAAATACCCTCAGTGG
*
32712992 GTAAAATTAGCGAAATACCC-CTGTAGG
1 GTAAAATTAGCGAAATACCCTCAGT-GG
32713019 GTAAAAT
1 GTAAAAT
32713026 GACTATTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (27 bp):
GTAAAATTAGCGAAATACCCTCAGTGG
Found at i:32713023 original size:54 final size:54
Alignment explanation
Indices: 32712911--32713025 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
32712901 ACCCCGATTC
* * **
32712911 GTAAAATTACCGAAATACCCCCTATTTGTAAAATTATCAAAATACCTCTACATT
1 GTAAAATTACCGAAATACCCCCTATTTGTAAAATTAGCAAAATACCCCTACAGG
* * * **
32712965 GTAAAATTATCGAAATACCCTC-AGTTTGTAAAATTAGCGAAATACCCCTGTAGG
1 GTAAAATTACCGAAATACCCCCTA-TTTGTAAAATTAGCAAAATACCCCTACAGG
32713019 GTAAAAT
1 GTAAAAT
32713026 GACTATTTTG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 50 0.98
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (54 bp):
GTAAAATTACCGAAATACCCCCTATTTGTAAAATTAGCAAAATACCCCTACAGG
Found at i:32713414 original size:22 final size:22
Alignment explanation
Indices: 32713386--32713444 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
32713376 TAATCTGATT
32713386 ATGGCTCTGTGCCAACCTAAAA
1 ATGGCTCTGTGCCAACCTAAAA
* * **
32713408 ATGGCTCTGTGCCATCCTGACT
1 ATGGCTCTGTGCCAACCTAAAA
*
32713430 ATGGCTTTGTGCCAA
1 ATGGCTCTGTGCCAA
32713445 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (22 bp):
ATGGCTCTGTGCCAACCTAAAA
Found at i:32715508 original size:159 final size:159
Alignment explanation
Indices: 32715216--32715537 Score: 491
Period size: 159 Copynumber: 2.0 Consensus size: 159
32715206 TGTGATTATG
*
32715216 TGATCTGGGTACTGGTCCTGTACGTCCTAACAGTGACTGAGTATACCGGCATGTGTTGCGGTTAC
1 TGATCTGGGTACTGGTCCTGTACGTCCTAACAGTGACTGAGTATACCGGCATGTGTTGCGATTAC
* * * *
32715281 TTGACAGCTTGTGTGAGCAACACCGTGTAGCTACATCTTGACCCACAGCTTGTGTGAGGAGGCCC
66 TTGACAACTTGTGTGAGCAACACCATGTAGCTACATCTTGACCCACAGCTTGTATGAGCAGGCCC
32715346 GTTGATAGCTCTAGTGTGAGCAGGATATA
131 GTTGATAGCTCTAGTGTGAGCAGGATATA
* * * * * *
32715375 TGATCTGGGTGCTGGTCCTGTACGTCTTACCAGTGGCTGAGTATACTGGCATGTGTTGTGATTAC
1 TGATCTGGGTACTGGTCCTGTACGTCCTAACAGTGACTGAGTATACCGGCATGTGTTGCGATTAC
* * * *
32715440 TTGATAACTTGTGTGAGCAGCACCATGTAGCTACGTCTTGACCCACAGCTTGTATGAGCAGGCTC
66 TTGACAACTTGTGTGAGCAACACCATGTAGCTACATCTTGACCCACAGCTTGTATGAGCAGGCCC
* *
32715505 GTTGATAGCTCTAGTGTGAGCAGTATATG
131 GTTGATAGCTCTAGTGTGAGCAGGATATA
32715534 TGAT
1 TGAT
32715538 ATGACATTCT
Statistics
Matches: 146, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
159 146 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (159 bp):
TGATCTGGGTACTGGTCCTGTACGTCCTAACAGTGACTGAGTATACCGGCATGTGTTGCGATTAC
TTGACAACTTGTGTGAGCAACACCATGTAGCTACATCTTGACCCACAGCTTGTATGAGCAGGCCC
GTTGATAGCTCTAGTGTGAGCAGGATATA
Found at i:32718624 original size:56 final size:56
Alignment explanation
Indices: 32718559--32718753 Score: 275
Period size: 56 Copynumber: 3.5 Consensus size: 56
32718549 TCCTAGACAG
* * * *
32718559 GGTCTTACTCACACACATATATCGGAGTCACATATCGATACCAATGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAATGT
* *
32718615 GTTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACT-T
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAA-TGT
* * * *
32718671 GGTCTTACTCGCATACATATATTGAAGTCACATATCAATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAATGT
*
32718727 GGTCTTCCTCGCACACATATATCGAAG
1 GGTCTTACTCGCACACATATATCGAAG
32718754 CCATGCTCTT
Statistics
Matches: 122, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
56 121 0.99
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAATGT
Found at i:32719917 original size:14 final size:15
Alignment explanation
Indices: 32719900--32719928 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32719890 TCACGAAAAT
32719900 TTCACACAT-ATAAA
1 TTCACACATAATAAA
32719914 TTCACACATAATAAA
1 TTCACACATAATAAA
32719929 AATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:32726139 original size:28 final size:26
Alignment explanation
Indices: 32726048--32726158 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 26
32726038 GGAAGCGTCT
* *
32726048 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCAC-ATTATCTGTTC
* *
32726075 TGGTGGCTTTGCCACATATTTCTGTTC
1 TGGTGGCTCTGCCACAT-TATCTGTTC
32726102 TGGTGGCTCTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCAC-ATTATCTGT-TC
* *
32726130 TGGTGACTCTGTCACATTATCTGTTC
1 TGGTGGCTCTGCCACATTATCTGTTC
32726156 TGG
1 TGG
32726159 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 50 0.68
28 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGTTC
Found at i:32726153 original size:54 final size:54
Alignment explanation
Indices: 32726048--32726158 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
32726038 GGAAGCGTCT
* * *
32726048 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATTTCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTC
* * *
32726102 TGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTC
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTC
32726156 TGG
1 TGG
32726159 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTC
Found at i:32728634 original size:465 final size:465
Alignment explanation
Indices: 32727759--32728688 Score: 1689
Period size: 465 Copynumber: 2.0 Consensus size: 465
32727749 CAGGTATCAC
32727759 CCCGAATGTGGCAGAATATTGGTTGGAGGCCACAGAACGAATTATGGATGACTTGGATTGATCTA
1 CCCGAATGTGGCAGAATATTGGTTGGAGGCCACAGAACGAATTATGGATGACTTGGATTGATCTA
32727824 TGGAGCAGAAACTGAAGGGAACCGTATCATTGCTACAGGACGAGGCTTACCAGTGGTGGCTCACT
66 TGGAGCAGAAACTGAAGGGAACCGTATCATTGCTACAGGACGAGGCTTACCAGTGGTGGCTCACT
* * *
32727889 ATGAGAGAAGGAACCCCAGCTGATAGGGTAACTTGGGAACTGTTTAAGATGGCCTTTAAAGGCAA
131 ATAAGAGAAGGAACCCCAGCTAATAGGGTAACTTGGGAACTGTTTAAGATGGCCTTTAAAGGAAA
32727954 GTATGTTGGGGCAAGTTATGTGGACGCTCGCAGGAAGGAATTCTTGAATCTCGTGCAAAGAGGTA
196 GTATGTTGGGGCAAGTTATGTGGACGCTCGCAGGAAGGAATTCTTGAATCTCGTGCAAAGAGGTA
* * *
32728019 AGACAGTTGCTGAATATGAGGCCAAGTTTCTGAGGTTGAGCCGGTATGCCGTGAGCATAGTTGCT
261 AGACAGTTGCTGAATACGAGGCCAAGTTTCTAAGGTTAAGCCGGTATGCCGTGAGCATAGTTGCT
32728084 ACAGAATATGAGCGAAGTGTACGCTTCGAGGATGGTCTTAGGGATGACCTGAGGGTGTTGATTGC
326 ACAGAATATGAGCGAAGTGTACGCTTCGAGGATGGTCTTAGGGATGACCTGAGGGTGTTGATTGC
* *
32728149 TCCGCAGAGGGAGTGAGACTTTACAGTCTTGGTGGAGAAGGCAAAGATAGCAGAGGAGGTTAAGC
391 TCCGCAGAGGGAGCGAGACTTTACAGTCTTGGTGGAGAAGGCAAAGATAGCAGAGGAGGTTAAGA
32728214 GGGCTGAAAA
456 GGGCTGAAAA
* *
32728224 CCCGAATGTGGCAGAATATTGGTTGGAGGCCACAGAACGAATTATGGATGACTTGGATTGCTCTG
1 CCCGAATGTGGCAGAATATTGGTTGGAGGCCACAGAACGAATTATGGATGACTTGGATTGATCTA
* *
32728289 TGGAGCAGAAACTGAAGGGAGCCGTATCATTGCTACGGGACGAGGCTTACCAGTGGTGGCTCACT
66 TGGAGCAGAAACTGAAGGGAACCGTATCATTGCTACAGGACGAGGCTTACCAGTGGTGGCTCACT
*
32728354 ATAAGAGAAGGAACCCCAGCTAATAGGGTAACTTGGGAATTGTTTAAGATGGCCTTTAAAGGAAA
131 ATAAGAGAAGGAACCCCAGCTAATAGGGTAACTTGGGAACTGTTTAAGATGGCCTTTAAAGGAAA
* *
32728419 GTATGTTGGGGCAAGTTATGTGGACGCTCGCAGGAAGGAATTCTTGAATCTGGTGCAAGGAGGTA
196 GTATGTTGGGGCAAGTTATGTGGACGCTCGCAGGAAGGAATTCTTGAATCTCGTGCAAAGAGGTA
*
32728484 AGACAGTTGCTGAGTACGAGGCCAAGTTTCTAAGGTTAAGCCGGTATGCCGTGAGCATAGTTGCT
261 AGACAGTTGCTGAATACGAGGCCAAGTTTCTAAGGTTAAGCCGGTATGCCGTGAGCATAGTTGCT
* *
32728549 ACGGAATATGAGCGATGTGTACGCTTCGAGGATGGTCTTAGGGATGACCTGAGGGTGTTGATTGC
326 ACAGAATATGAGCGAAGTGTACGCTTCGAGGATGGTCTTAGGGATGACCTGAGGGTGTTGATTGC
*
32728614 TCCGCAGAGGGAGCGAGACTTTACGGTCTTGGTGGAGAAGGCAAAGATAGCAGAGGAGGTTAAGA
391 TCCGCAGAGGGAGCGAGACTTTACAGTCTTGGTGGAGAAGGCAAAGATAGCAGAGGAGGTTAAGA
32728679 GGGCTGAAAA
456 GGGCTGAAAA
32728689 GCAGAATCGA
Statistics
Matches: 446, Mismatches: 19, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
465 446 1.00
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (465 bp):
CCCGAATGTGGCAGAATATTGGTTGGAGGCCACAGAACGAATTATGGATGACTTGGATTGATCTA
TGGAGCAGAAACTGAAGGGAACCGTATCATTGCTACAGGACGAGGCTTACCAGTGGTGGCTCACT
ATAAGAGAAGGAACCCCAGCTAATAGGGTAACTTGGGAACTGTTTAAGATGGCCTTTAAAGGAAA
GTATGTTGGGGCAAGTTATGTGGACGCTCGCAGGAAGGAATTCTTGAATCTCGTGCAAAGAGGTA
AGACAGTTGCTGAATACGAGGCCAAGTTTCTAAGGTTAAGCCGGTATGCCGTGAGCATAGTTGCT
ACAGAATATGAGCGAAGTGTACGCTTCGAGGATGGTCTTAGGGATGACCTGAGGGTGTTGATTGC
TCCGCAGAGGGAGCGAGACTTTACAGTCTTGGTGGAGAAGGCAAAGATAGCAGAGGAGGTTAAGA
GGGCTGAAAA
Found at i:32734453 original size:28 final size:27
Alignment explanation
Indices: 32734360--32734472 Score: 126
Period size: 27 Copynumber: 4.2 Consensus size: 27
32734350 AGGAAGCGTC
* *
32734360 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTTTCTGTAT
32734387 CTGGTGGCTCTGCCACATATTTCTGT-T
1 CTGGTGGCTCTGCCACAT-TTTCTGTAT
32734414 CTGGTGGCTCTGCCACGATTTTCTGTAT
1 CTGGTGGCTCTGCCAC-ATTTTCTGTAT
* *
32734442 CTGGTGACTCTGTCACATTATT-TGT-T
1 CTGGTGGCTCTGCCACATT-TTCTGTAT
32734468 CTGGT
1 CTGGT
32734473 AGCCATGCTG
Statistics
Matches: 77, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
26 8 0.10
27 50 0.65
28 19 0.25
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.40
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTTCTGTAT
Found at i:32734468 original size:54 final size:54
Alignment explanation
Indices: 32734360--32734472 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
32734350 AGGAAGCGTC
*
32734360 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATTTCTGTT
* * * *
32734414 CTGGTGGCTCTGCCACGATTTTCTGTATCTGGTGACTCTGTCACAT-TATT-TGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATAT-TTCTGTT
32734468 CTGGT
1 CTGGT
32734473 AGCCATGCTG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 32 0.62
55 20 0.38
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.40
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATTTCTGTT
Found at i:32739622 original size:43 final size:42
Alignment explanation
Indices: 32739574--32739731 Score: 113
Period size: 43 Copynumber: 3.7 Consensus size: 42
32739564 AGCATATACA
*
32739574 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACACGTAATCAAA-ATCG
** * * * *
32739617 ATGCCATTGTCCTAGACAG-GGTCTTACACGAAATCAGATAT-G
1 ATGCCAACGTCCCAGA-TGTGGTCTTACACGTAATCA-AAATCG
* * * * ** * *
32739659 ATGTCGATGTCCTAGACATGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAACGTCCCAGATGTGGTCTTACACGT-AATCA-AAATCG
*
32739703 GTGCCAACGTCCCAGATGTGGTCTTACAC
1 ATGCCAACGTCCCAGATGTGGTCTTACAC
32739732 AAAAACACAT
Statistics
Matches: 87, Mismatches: 23, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
42 25 0.29
43 37 0.43
44 25 0.29
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGATGTGGTCTTACACGTAATCAAAATCG
Found at i:32740211 original size:50 final size:50
Alignment explanation
Indices: 32740164--32740264 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
32740154 AAAATACACA
* *
32740164 TAATTTGCACATACTCGTGCTTGGCCGAATATTCATCGCACTCATACAAG
1 TAATTTGCACATACTCATGCTTGGCCGAATATTCATAGCACTCATACAAG
* *
32740214 TAATTTTCACATACTCATGCTTGGCCGAATATTTATAGCACTCATACAAG
1 TAATTTGCACATACTCATGCTTGGCCGAATATTCATAGCACTCATACAAG
32740264 T
1 T
32740265 CCACACATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.33
Consensus pattern (50 bp):
TAATTTGCACATACTCATGCTTGGCCGAATATTCATAGCACTCATACAAG
Found at i:32743164 original size:28 final size:28
Alignment explanation
Indices: 32743133--32743192 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
32743123 CTTTATGTGC
*
32743133 GAGATATCGAGTGTGGCACTTAGTGTAT
1 GAGATATCGAGTATGGCACTTAGTGTAT
* *
32743161 GAGATATCGAGTATTGCACTTAGTGTGT
1 GAGATATCGAGTATGGCACTTAGTGTAT
32743189 GAGA
1 GAGA
32743193 CATTAAGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.27, C:0.10, G:0.32, T:0.32
Consensus pattern (28 bp):
GAGATATCGAGTATGGCACTTAGTGTAT
Found at i:32743201 original size:28 final size:28
Alignment explanation
Indices: 32743148--32743203 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
32743138 ATCGAGTGTG
* *
32743148 GCACTTAGTGTATGAGATATCGAGTATT
1 GCACTTAGTGTATGAGACATCAAGTATT
* *
32743176 GCACTTAGTGTGTGAGACATTAAGTATT
1 GCACTTAGTGTATGAGACATCAAGTATT
32743204 CAACGGCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.36
Consensus pattern (28 bp):
GCACTTAGTGTATGAGACATCAAGTATT
Found at i:32743884 original size:21 final size:21
Alignment explanation
Indices: 32743858--32743899 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
32743848 TAATAATGCA
32743858 TATTTTGTAAATGGCCATTTT
1 TATTTTGTAAATGGCCATTTT
*
32743879 TATTTTGTAAATGGTCATTTT
1 TATTTTGTAAATGGCCATTTT
32743900 GATATTTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.07, G:0.14, T:0.55
Consensus pattern (21 bp):
TATTTTGTAAATGGCCATTTT
Found at i:32746116 original size:26 final size:28
Alignment explanation
Indices: 32746081--32746134 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
32746071 ATCATAGCAT
*
32746081 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
*
32746108 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
32746135 TTTTGGTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTAGAGGGGTA
Found at i:32754615 original size:28 final size:27
Alignment explanation
Indices: 32754558--32754709 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
32754548 TAAATTGTGC
* *
32754558 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
32754585 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
32754613 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32754640 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
32754668 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32754695 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32754710 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:32754625 original size:55 final size:55
Alignment explanation
Indices: 32754558--32754709 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
32754548 TAAATTGTGC
*
32754558 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
32754613 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
32754668 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
32754710 GACTTAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:32762261 original size:27 final size:27
Alignment explanation
Indices: 32762230--32762407 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32762220 TAAATTGTAC
32762230 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32762257 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32762283 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32762311 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32762339 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32762366 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32762393 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32762408 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32762344 original size:82 final size:81
Alignment explanation
Indices: 32762231--32762386 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32762221 AAATTGTACA
* *
32762231 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32762295 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32762312 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32762377 TGCGAGTTGA
65 TGCGAATTGA
32762387 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32762398 original size:82 final size:81
Alignment explanation
Indices: 32762227--32762407 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32762217 GATTAAATTG
* *
32762227 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32762292 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32762308 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32762372 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32762390 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32762408 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32765852 original size:56 final size:54
Alignment explanation
Indices: 32765790--32765964 Score: 208
Period size: 56 Copynumber: 3.1 Consensus size: 54
32765780 TTGGCGCTAC
* *
32765790 GTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGAATTGACTATGTAGCACTAA
1 GTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
*
32765846 GTGTGCGAGTTTGACTATGT-AGCCACTAAGTGTGCGAGTTGACTATTGTAGCACTAA
1 GTGTGCGAGTTT-AAT-TGTGAG-CACTAAGTGTGCGAGTTGACTA-TGTAGCACTAA
* * * * *
32765903 GTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGA
1 GTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
32765958 GTGTGCG
1 GTGTGCG
32765965 GACTTAATAT
Statistics
Matches: 104, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
55 20 0.19
56 56 0.54
57 28 0.27
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.32
Consensus pattern (54 bp):
GTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
Found at i:32765868 original size:28 final size:27
Alignment explanation
Indices: 32765811--32765964 Score: 227
Period size: 28 Copynumber: 5.6 Consensus size: 27
32765801 TAAATTGTGC
*
32765811 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
32765838 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
32765866 AGCCACTAAGTGTGCGAGTTGACTATTGT
1 AG-CACTAAGTGTGCGAGTTGACTA-TGT
*
32765895 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
32765923 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32765950 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32765965 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
27 39 0.33
28 54 0.45
29 26 0.22
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:32784414 original size:39 final size:38
Alignment explanation
Indices: 32784371--32784491 Score: 93
Period size: 39 Copynumber: 3.1 Consensus size: 38
32784361 TTAAACACAC
32784371 TTAAAAATATGTATTAAAGATGTCC-GAACTATGACATAA
1 TTAAAAATAT-TATTAAAGATGTCCAG-ACTATGACATAA
* * ** * *
32784410 TTAAAACTCTTATTAGTGATGTTCAGATTATGACATAA
1 TTAAAAATATTATTAAAGATGTCCAGACTATGACATAA
* * * * *
32784448 TTAAAAACTCA-TATTAATGATATTCAAATTATGACATAA
1 TTAAAAA-T-ATTATTAAAGATGTCCAGACTATGACATAA
32784487 TTAAA
1 TTAAA
32784492 GATTCAAACT
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
38 28 0.41
39 40 0.59
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.36
Consensus pattern (38 bp):
TTAAAAATATTATTAAAGATGTCCAGACTATGACATAA
Found at i:32784442 original size:38 final size:38
Alignment explanation
Indices: 32784400--32784491 Score: 139
Period size: 39 Copynumber: 2.4 Consensus size: 38
32784390 ATGTCCGAAC
* * * *
32784400 TATGACATAATTAAAACTCTTATTAGTGATGTTCAGAT
1 TATGACATAATTAAAACTCATATTAATGATATTCAAAT
32784438 TATGACATAATTAAAAACTCATATTAATGATATTCAAAT
1 TATGACATAATT-AAAACTCATATTAATGATATTCAAAT
32784477 TATGACATAATTAAA
1 TATGACATAATTAAA
32784492 GATTCAAACT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
38 15 0.31
39 34 0.69
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.37
Consensus pattern (38 bp):
TATGACATAATTAAAACTCATATTAATGATATTCAAAT
Found at i:32785435 original size:38 final size:38
Alignment explanation
Indices: 32785382--32785525 Score: 164
Period size: 38 Copynumber: 3.8 Consensus size: 38
32785372 GAGTTATATC
*
32785382 GTTATTCAGGCTTTGTGCCTAGTAGGCTTAGTGCCGGA
1 GTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGGA
* * * *
32785420 ATTATTCAGGTTTTGTGCCTAGCAGGCTTAGTGTCGGT
1 GTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGGA
* * ** * *
32785458 GTTATTTAGGCTTTGTACCTAGTTGGCTTACTACC-GA
1 GTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGGA
*
32785495 TGTTATTCAGGCTTTTTGCCTAGCAGGCTTA
1 -GTTATTCAGGCTTTGTGCCTAGCAGGCTTA
32785526 TTACTGGTGT
Statistics
Matches: 85, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
37 1 0.01
38 84 0.99
ACGTcount: A:0.17, C:0.18, G:0.26, T:0.39
Consensus pattern (38 bp):
GTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGGA
Found at i:32785535 original size:76 final size:76
Alignment explanation
Indices: 32785382--32785525 Score: 202
Period size: 76 Copynumber: 1.9 Consensus size: 76
32785372 GAGTTATATC
* * *
32785382 GTTATTCAGGCTTTGTGCCTAGTAGGCTTAGTGCCGGAATTATTCAGGTTTTGTGCCTAGCAGGC
1 GTTATTCAGGCTTTGTACCTAGTAGGCTTACTACCGGAATTATTCAGGTTTTGTGCCTAGCAGGC
32785447 TTAGTGTCGGT
66 TTAGTGTCGGT
* * *
32785458 GTTATTTAGGCTTTGTACCTAGTTGGCTTACTACC-GATGTTATTCAGGCTTTT-TGCCTAGCAG
1 GTTATTCAGGCTTTGTACCTAGTAGGCTTACTACCGGA-ATTATTCAGG-TTTTGTGCCTAGCAG
32785521 GCTTA
64 GCTTA
32785526 TTACTGGTGT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
75 2 0.03
76 54 0.90
77 4 0.07
ACGTcount: A:0.17, C:0.18, G:0.26, T:0.39
Consensus pattern (76 bp):
GTTATTCAGGCTTTGTACCTAGTAGGCTTACTACCGGAATTATTCAGGTTTTGTGCCTAGCAGGC
TTAGTGTCGGT
Found at i:32786696 original size:238 final size:238
Alignment explanation
Indices: 32786220--32786655 Score: 624
Period size: 238 Copynumber: 1.8 Consensus size: 238
32786210 AGCCTGAGAT
* *
32786220 ACGGGCATGTGTCTCAGCCGTGTGTCATCTGGGAGTTTTCTTATATGCAAGTCAGTGAGTTACAC
1 ACGGGCATGTGTCTCAGCCGTGTGTCATCTGGGAGTTTCCTTATATGCAAGTCAGTAAGTTACAC
* * * * *
32786285 GTCCTAACACATGGCCTGGTATACGGGCGTGTAGGGCTATTTTAAGAGTTACGTGGCCTGATACA
66 GTCCTAACACATGGCCTGGCATACAGGCGTGTAGGGATATTTCAAGAGTTACATGGCCTGATACA
* * * * * * * *
32786350 TAGGCGTGTGACATGGCCATGTGATCCTACTCAGAGAGTTACACAGGTGAGTACACGGGTTGGGA
131 GAGGCATGTGACACGCCCATATGACCCTACTAAGAGAGTTACACAGGTGAGTACACGGGCTGGGA
32786415 CACATCCATGTGTCCCTAAATCAAAGGTTACACAACCTGGGAC
196 CACATCCATGTGTCCCTAAATCAAAGGTTACACAACCTGGGAC
* * *
32786458 ACGGGCATGTGTCTCAGCCGTGTGTCATCTTGGAGTTTCCTTGTATGCAATTCAGTAAGTTACAC
1 ACGGGCATGTGTCTCAGCCGTGTGTCATCTGGGAGTTTCCTTATATGCAAGTCAGTAAGTTACAC
* * * *
32786523 GGT-CTAGCACATGGCCTGGCATACAGGCGTGTGGGGATATTTCGAGAGTTACATGGCTTGATAC
66 -GTCCTAACACATGGCCTGGCATACAGGCGTGTAGGGATATTTCAAGAGTTACATGGCCTGATAC
* *
32786587 ACGA-GCATGTGACACGCCCGTATGACCCTACTAAGAGAGTTACACAGGTGAGTACGCGGGCTGG
130 A-GAGGCATGTGACACGCCCATATGACCCTACTAAGAGAGTTACACAGGTGAGTACACGGGCTGG
32786651 GACAC
194 GACAC
32786656 GGTTGTGTGT
Statistics
Matches: 172, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
238 169 0.98
239 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (238 bp):
ACGGGCATGTGTCTCAGCCGTGTGTCATCTGGGAGTTTCCTTATATGCAAGTCAGTAAGTTACAC
GTCCTAACACATGGCCTGGCATACAGGCGTGTAGGGATATTTCAAGAGTTACATGGCCTGATACA
GAGGCATGTGACACGCCCATATGACCCTACTAAGAGAGTTACACAGGTGAGTACACGGGCTGGGA
CACATCCATGTGTCCCTAAATCAAAGGTTACACAACCTGGGAC
Found at i:32788874 original size:17 final size:18
Alignment explanation
Indices: 32788849--32788894 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 18
32788839 CAATACCAAG
*
32788849 AAAACAAACAAAAG-TAA
1 AAAAAAAACAAAAGTTAA
32788866 AAAAAAAAC--AAGTTAA
1 AAAAAAAACAAAAGTTAA
*
32788882 AAAAACAACAAAA
1 AAAAAAAACAAAA
32788895 CACAAACAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
15 3 0.12
16 11 0.46
17 8 0.33
18 2 0.08
ACGTcount: A:0.78, C:0.11, G:0.04, T:0.07
Consensus pattern (18 bp):
AAAAAAAACAAAAGTTAA
Found at i:32794234 original size:41 final size:41
Alignment explanation
Indices: 32794187--32794276 Score: 135
Period size: 41 Copynumber: 2.2 Consensus size: 41
32794177 AGTGTATATG
* * *
32794187 CAGCTCATCTTCAGCAGAAGTTAGCTCAGAGTACTCTACAC
1 CAGCTCATCTTCAGCACAAGATAGCTCAAAGTACTCTACAC
*
32794228 CAGCTCATCTTCAGCTCAAGATAGCTCAAAGTACTCTACAC
1 CAGCTCATCTTCAGCACAAGATAGCTCAAAGTACTCTACAC
*
32794269 CATCTCAT
1 CAGCTCAT
32794277 GTCAGCTCAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26
Consensus pattern (41 bp):
CAGCTCATCTTCAGCACAAGATAGCTCAAAGTACTCTACAC
Found at i:32801989 original size:27 final size:27
Alignment explanation
Indices: 32801940--32802098 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
32801930 ACGAGGCTGC
* *
32801940 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
32801967 CAGATATTGTGGCAGAGCTACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
32801993 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
32802020 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
32802047 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
32802074 CAGATAATTGTGGCATAGGCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
32802099 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.09
27 99 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:32802099 original size:54 final size:54
Alignment explanation
Indices: 32801958--32802101 Score: 229
Period size: 54 Copynumber: 2.7 Consensus size: 54
32801948 GTGACGAAGT
* *
32801958 CACCAGATACAGAT-ATTGTGGCAGA-GCTACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGGC-ACCAGGACAGATATATGTGGCAGAGC
*
32802012 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGGCACCAGGACAGATATATGTGGCAGAGC
32802066 CACCAGATCAGATAATTGTGGCATAGGCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGGCACCAGGAC
32802102 GCTTCCTCCA
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
53 5 0.06
54 78 0.93
55 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGGCACCAGGACAGATATATGTGGCAGAGC
Found at i:32806108 original size:29 final size:27
Alignment explanation
Indices: 32806090--32806159 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
32806080 ATATTAAGTC
32806090 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
32806117 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
32806145 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
32806160 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:32806153 original size:28 final size:28
Alignment explanation
Indices: 32806090--32806187 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
32806080 ATATTAAGTC
*
32806090 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32806117 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32806145 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32806174 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32806188 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32811736 original size:28 final size:28
Alignment explanation
Indices: 32811704--32811776 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 28
32811694 CATGGTTCGA
32811704 CCATGACAATGTGCTAAGTGAAATAAGT
1 CCATGACAATGTGCTAAGTGAAATAAGT
*
32811732 CCATGGC-A--T-CTAAGTGAAATAAGT
1 CCATGACAATGTGCTAAGTGAAATAAGT
*
32811756 CCATGGA-ATTGTGCTAAGTGA
1 CCAT-GACAATGTGCTAAGTGA
32811777 GAAATTTCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
24 19 0.51
25 2 0.05
27 2 0.05
28 14 0.38
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (28 bp):
CCATGACAATGTGCTAAGTGAAATAAGT
Found at i:32811855 original size:51 final size:51
Alignment explanation
Indices: 32811800--32811998 Score: 283
Period size: 51 Copynumber: 3.9 Consensus size: 51
32811790 TGAACCTTAG
*
32811800 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATATGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATATGAAGGCCACTTTGT
* * *
32811851 GAATATAATAGCTTTGAACACAAGTGTAGTACTATATGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATATGAAGGCCACTTTGT
* * *
32811902 GAATAAAATAGCTTCGGACACAAGTGAGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATATGAAGGCCACTTTGT
* * * *
32811953 GCATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGTCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATATGAAGGCCAC
32811999 CGTGTATTCG
Statistics
Matches: 132, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
50 1 0.01
51 131 0.99
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATATGAAGGCCACTTTGT
Found at i:32813332 original size:48 final size:48
Alignment explanation
Indices: 32813280--32813655 Score: 276
Period size: 48 Copynumber: 7.9 Consensus size: 48
32813270 GGCCACATTT
*
32813280 TGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAA
* * * *
32813328 TGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CTCAAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAA-A
* * * *
32813374 TGTA-AGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCCGC-TACGAGA
1 TG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAAA
* * * *
32813420 T--GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CG-TA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAA
* * * ** *
32813464 TAGAGGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACAGATATG
1 T-GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-A-A
* * * * **
32813516 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATT
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAA
* * ** *
32813564 TCGATAGCCATTGTAAGACCATGTCTAAGACATGGCATCGAC-TTG--A
1 T-GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAA
* *
32813610 TGAATGAGCCAGTGCAAGACCATGTCTGGGACATGGCATTGGCATT
1 TG-A-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
32813656 ATACACTATG
Statistics
Matches: 262, Mismatches: 47, Indels: 38
0.76 0.14 0.11
Matches are distributed among these distances:
44 13 0.05
45 19 0.07
46 53 0.20
47 47 0.18
48 58 0.22
49 34 0.13
50 35 0.13
51 2 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAA
Found at i:32813389 original size:46 final size:49
Alignment explanation
Indices: 32813243--32813648 Score: 286
Period size: 46 Copynumber: 8.6 Consensus size: 49
32813233 TTTGTGTGTT
* ***
32813243 AGTGTAAGA-CATGTCTGGGA-AT-GCATCGGCCACATTTTG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAGATGTAGAGCC
* * * *
32813288 AATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAA-ATG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCAAGATGTAGAGCC
*
32813336 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAGATGTAGAGCC
* * * *
32813382 AGTGTAAGA-CATGTCTAGGACAT-GCATCCG-CTACGAGATGT---GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CAAGATGTAGAGCC
* *
32813426 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGT-ATAGA-G--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-C-TCA-AGATGTAGAGCC
* * * *
32813474 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCA-AGATGT-AGAGCC
* * *
32813524 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC--GATTTCGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAGATGT--AGAGCC
* ** * * *
32813573 ATTGTAAGACCATGTCTAAGACATGGCATC-GACT--TGATGAATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAGATGTA-GAGCC
*
32813620 AGTGCAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
32813649 TGGCATTATA
Statistics
Matches: 292, Mismatches: 45, Indels: 46
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.04
45 26 0.09
46 70 0.24
47 48 0.16
48 70 0.24
49 33 0.11
50 32 0.11
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAGATGTAGAGCC
Found at i:32818425 original size:25 final size:25
Alignment explanation
Indices: 32818347--32818427 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 25
32818337 ATGCTTTCAT
*
32818347 GAGCTGCAAATCGGTAAGCTCATAC
1 GAGCTGCAAATCAGTAAGCTCATAC
* *
32818372 AAGCTG-AGAATCAGTAAGCTCTTAC
1 GAGCTGCA-AATCAGTAAGCTCATAC
* *
32818397 GAGCTGCAAATAAGTAAGCTCATAT
1 GAGCTGCAAATCAGTAAGCTCATAC
32818422 GAGCTG
1 GAGCTG
32818428 TGGTGTGTCC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
24 1 0.02
25 45 0.96
26 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (25 bp):
GAGCTGCAAATCAGTAAGCTCATAC
Found at i:32819323 original size:12 final size:13
Alignment explanation
Indices: 32819306--32819337 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
32819296 ATAGCACATT
32819306 TCAAAAC-ATGCA
1 TCAAAACTATGCA
32819318 TCAAAACTATGCA
1 TCAAAACTATGCA
32819331 -CAAAACT
1 TCAAAACT
32819338 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:32824877 original size:100 final size:100
Alignment explanation
Indices: 32824764--32824962 Score: 326
Period size: 100 Copynumber: 2.0 Consensus size: 100
32824754 TTGTTTTGAT
32824764 CATTTTCAATTTTATCGATTATGTTTCAGAAAATGTTTTCCTTTGAAGGGATCCAAGACAATAGG
1 CATTTTCAATTTTATCGATTATGTTTCAGAAAATGTTTTCCTTTGAAGGGATCCAAGACAATAGG
*
32824829 AGAAATGAATTGTTTGTGTGTGGAAACAAAGCTAG
66 AGAAATGAACTGTTTGTGTGTGGAAACAAAGCTAG
* * * * * **
32824864 CATTTTTAATTTTATTGATTATGTTTGAGAAAATGTTTTCCTTTGAAGGGATTCAAGACAGTCTG
1 CATTTTCAATTTTATCGATTATGTTTCAGAAAATGTTTTCCTTTGAAGGGATCCAAGACAATAGG
32824929 AGAAATGAACTGTTTGTGTGTGGAAACAAAGCTA
66 AGAAATGAACTGTTTGTGTGTGGAAACAAAGCTA
32824963 CTTTGATCAA
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 91 1.00
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (100 bp):
CATTTTCAATTTTATCGATTATGTTTCAGAAAATGTTTTCCTTTGAAGGGATCCAAGACAATAGG
AGAAATGAACTGTTTGTGTGTGGAAACAAAGCTAG
Found at i:32850575 original size:31 final size:31
Alignment explanation
Indices: 32850532--32850595 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32850522 CCTTTTCATA
32850532 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
32850563 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
32850594 TT
1 TT
32850596 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:32850861 original size:24 final size:24
Alignment explanation
Indices: 32850788--32850903 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
32850778 GCTTTATCAT
*
32850788 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
32850813 ATAACTGGGG---AAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32850833 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32850857 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32850881 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32850904 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 0, Indels: 11
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.16
21 1 0.01
22 4 0.05
23 6 0.07
24 53 0.62
25 8 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32850975 original size:9 final size:9
Alignment explanation
Indices: 32850961--32851017 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32850951 ATCTCGTGTG
32850961 CATATCATA
1 CATATCATA
*
32850970 CATATCATGTG
1 CATATCA--TA
32850981 CATATCATA
1 CATATCATA
* *
32850990 CATGTCATGTG
1 CATATCA--TA
32851001 CATATCATA
1 CATATCATA
32851010 CATATCAT
1 CATATCAT
32851018 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:32850980 original size:20 final size:20
Alignment explanation
Indices: 32850957--32851019 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
32850947 GAACATCTCG
32850957 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
32850977 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
32850997 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
32851017 TGT
1 TGT
32851020 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:32851084 original size:25 final size:25
Alignment explanation
Indices: 32851056--32851103 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32851046 ATATATAAAC
* * *
32851056 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
32851081 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
32851104 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:32858595 original size:31 final size:31
Alignment explanation
Indices: 32858552--32858615 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
32858542 CCTTTTCATA
*
32858552 TTTCATAATTCATAACACTGGGCTGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
32858583 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
32858614 TT
1 TT
32858616 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:32858884 original size:23 final size:24
Alignment explanation
Indices: 32858808--32858927 Score: 165
Period size: 24 Copynumber: 5.0 Consensus size: 24
32858798 GCTTTATCAT
*
32858808 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
32858833 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
*
32858858 ATAACTGGGGCATAAACCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32858881 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32858905 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32858928 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 11
0.86 0.03 0.11
Matches are distributed among these distances:
23 23 0.26
24 34 0.39
25 25 0.29
26 5 0.06
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32858915 original size:47 final size:47
Alignment explanation
Indices: 32858829--32858926 Score: 162
Period size: 47 Copynumber: 2.1 Consensus size: 47
32858819 CCTAGCCTCT
32858829 TTTAATAACTGGGGCAAAGCCCTTTTTTAATAACTGGGGCATAAACCC
1 TTTAATAACTGGGGCAAAGCCC-TTTTTAATAACTGGGGCATAAACCC
*
32858877 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAACCC
32858924 TTT
1 TTT
32858927 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
47 26 0.54
48 16 0.33
49 6 0.12
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGGCATAAACCC
Found at i:32859004 original size:20 final size:20
Alignment explanation
Indices: 32858981--32859023 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
32858971 GAACATCTCG
32858981 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
32859001 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
32859021 TGT
1 TGT
32859024 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:32859106 original size:25 final size:25
Alignment explanation
Indices: 32859060--32859107 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
32859050 ATATATAAAC
* * * *
32859060 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
32859085 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
32859108 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:32861468 original size:93 final size:93
Alignment explanation
Indices: 32861359--32861530 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
32861349 CGCCCATAAG
* * *
32861359 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTTAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32861424 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
32861452 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32861517 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
32861531 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:32861527 original size:46 final size:46
Alignment explanation
Indices: 32861352--32861527 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
32861342 TGTAACCCGC
* *
32861352 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
32861398 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
32861448 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
32861491 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
32861528 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 27 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32876058 original size:40 final size:40
Alignment explanation
Indices: 32876014--32876133 Score: 213
Period size: 40 Copynumber: 3.0 Consensus size: 40
32876004 CCGGACATAG
* *
32876014 TACCAGCACTAAGCCTGCGGGATTTAACCTGGATATATAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
32876054 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
*
32876094 TACCAGCACGAAGCCTACGGGATTTAACCCGGATATATAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
32876134 ATTATATCGA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (40 bp):
TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATAT
Found at i:32883709 original size:40 final size:40
Alignment explanation
Indices: 32883624--32883711 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
32883614 TTAAGTCCGG
* * *
32883624 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTAACAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
32883664 ATATATTAACAGCACGAAGCCTGCGGGATTTAACCTGGAT
1 ATATATTAACAGCACGAAGCCTGCGGGATTTAACCCGGAT
32883704 ATATATTA
1 ATATATTA
32883712 TATCGAGAGC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (40 bp):
ATATATTAACAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:32889046 original size:19 final size:19
Alignment explanation
Indices: 32889024--32889061 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32889014 TTTTACCATC
*
32889024 TCTTTCTTT-TTTTCTTTTT
1 TCTTT-TTTCTTTTATTTTT
32889043 TCTTTTTTCTTTTATTTTT
1 TCTTTTTTCTTTTATTTTT
32889062 GCCACAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (19 bp):
TCTTTTTTCTTTTATTTTT
Found at i:32889048 original size:6 final size:7
Alignment explanation
Indices: 32889026--32889055 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
32889016 TTACCATCTC
32889026 TTTCTTTT
1 TTTC-TTT
32889034 TTTCTTT
1 TTTCTTT
32889041 TTTCTTT
1 TTTCTTT
32889048 TTTCTTT
1 TTTCTTT
32889055 T
1 T
32889056 ATTTTTGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.82
8 4 0.18
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTCTTT
Found at i:32890877 original size:15 final size:16
Alignment explanation
Indices: 32890857--32890886 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32890847 AAGATCTTAT
32890857 AATCAT-ACCTTACTC
1 AATCATAACCTTACTC
32890872 AATCATAACCTTACT
1 AATCATAACCTTACT
32890887 GAGGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.30, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:32891168 original size:42 final size:42
Alignment explanation
Indices: 32891052--32891211 Score: 169
Period size: 42 Copynumber: 3.8 Consensus size: 42
32891042 CATAGGACTG
* *
32891052 TACCAATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCG
1 TACCAATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCA
* * * * *
32891094 TATCGATACCAATAGCCCAGCTATGGTCTTACACGAAGTCTCA
1 TACCAATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCA
* *
32891137 TACCAATGCCATATCCCAAATATGGTCTTACACGTAGTCTCA
1 TACCAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCA
*** **
32891179 TATTGATGCCATATCCCCTATATGGTCTTACAC
1 TACCAATGCCATATCCCAGATATGGTCTTACAC
32891212 ATAGTCTTAA
Statistics
Matches: 97, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 65 0.67
43 32 0.33
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (42 bp):
TACCAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCA
Found at i:32895364 original size:46 final size:46
Alignment explanation
Indices: 32895311--32895486 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
32895301 TATTTGGGCA
*
32895311 TCCGAACTCCTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
32895357 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
32895402 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32895450 -CCTGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32895487 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 57 0.55
47 28 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32895466 original size:93 final size:93
Alignment explanation
Indices: 32895307--32895479 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
32895297 GGGATATTTG
* *
32895307 GGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAG
32895372 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * *
32895400 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTGA
*
32895464 GTTGAGTTCGAGTTCG
65 GTTGAGTCCGAGTTCG
32895480 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:32901243 original size:42 final size:42
Alignment explanation
Indices: 32901126--32901287 Score: 198
Period size: 42 Copynumber: 3.8 Consensus size: 42
32901116 TACCGTACCA
* *
32901126 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAGTCTCGTATCG
* * * * *
32901168 ATGTCAATAGCCAAGTTATGGTCTTACATGTAGTCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACATGTAGTCTCGTATCG
* * *
32901211 ATGCCATATCCCATATATGGTCTTACACGTAGTCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACATGTAGTCTCGTATCG
* * *
32901253 ATGTCATATCCCCGATATGGTCTTACATATAGTCT
1 ATGCCATATCCCAGATATGGTCTTACATGTAGTCT
32901288 TAATAACCCT
Statistics
Matches: 100, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
42 64 0.64
43 36 0.36
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.36
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAGTCTCGTATCG
Found at i:32904568 original size:43 final size:43
Alignment explanation
Indices: 32904520--32904682 Score: 195
Period size: 43 Copynumber: 3.8 Consensus size: 43
32904510 ACCGAGATGA
*
32904520 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TACTGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATA-TGT
* * *
32904563 GATTACATGTAAGACCATGTCTGGGACATAGGCATCGTTATAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATGT
* * * *
32904606 GATTTCGTGTAAGACCATGTCTGGGACAATGGCATCGATATGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATGT
* * * *
32904649 GATAACATGTAAGATCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
32904683 TGTATGAGCT
Statistics
Matches: 103, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
42 6 0.06
43 95 0.92
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATGT
Found at i:32908222 original size:42 final size:43
Alignment explanation
Indices: 32908175--32908288 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 43
32908165 TGAGATTACA
** *
32908175 TGTAAGACCATGTCTGGGACATTGGCATTGTACTGTGA-TTAG
1 TGTAAGACCATGTCTGGGACATTGGCATCATACTATGATTTAG
* ** *
32908217 TGTAAGACCATGTCTGGGACATAGGCATCATTGTATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCATACTATGATTTAG
*
32908260 TGTAAGACCATGTTTGGGACATTGGCATC
1 TGTAAGACCATGTCTGGGACATTGGCATC
32908289 GATATGAGAT
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 32 0.52
43 30 0.48
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCATACTATGATTTAG
Found at i:32909176 original size:13 final size:13
Alignment explanation
Indices: 32909158--32909183 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32909148 ATGATTTATG
32909158 ATTGATTTGTAAT
1 ATTGATTTGTAAT
32909171 ATTGATTTGTAAT
1 ATTGATTTGTAAT
32909184 TTGCCTTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
ATTGATTTGTAAT
Found at i:32914792 original size:46 final size:46
Alignment explanation
Indices: 32914742--32914913 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
32914732 TGAGCATCCG
32914742 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCC
* * * *
32914788 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCC
*
32914835 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCC
* *
32914880 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32914914 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.53
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCC
Found at i:32914894 original size:93 final size:93
Alignment explanation
Indices: 32914735--32914906 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
32914725 GGATGGTTGA
*
32914735 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
32914800 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
32914828 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCC-AACTCGTTGAG
32914892 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
32914907 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 3 0.04
93 73 0.96
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32922943 original size:46 final size:46
Alignment explanation
Indices: 32922892--32923065 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
32922882 GTTGAGCATT
32922892 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * *
32922938 TGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* *
32922985 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
32923031 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32923066 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:32923051 original size:93 final size:93
Alignment explanation
Indices: 32922887--32923058 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32922877 GGATGGTTGA
* * * *
32922887 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32922952 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
32922980 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32923045 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32923059 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32925600 original size:28 final size:28
Alignment explanation
Indices: 32925539--32925602 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
32925529 GATTAATACT
*
32925539 AAAATTAAAAATGAAATAAACAAATATT
1 AAAATTAAAAATGAAATAAACAAATATG
*
32925567 AGAAATTAAAAA-GAAAATAGA-AAATAATG
1 A-AAATTAAAAATG-AAATAAACAAAT-ATG
32925596 AAAATTA
1 AAAATTA
32925603 TAGAAGTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 12 0.39
29 19 0.61
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.22
Consensus pattern (28 bp):
AAAATTAAAAATGAAATAAACAAATATG
Found at i:32928362 original size:9 final size:9
Alignment explanation
Indices: 32928311--32928360 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
32928301 TAATGTTTAC
32928311 AATTTAAAA
1 AATTTAAAA
*
32928320 AATTCAAAA
1 AATTTAAAA
*
32928329 AATATAAAA
1 AATTTAAAA
32928338 AATATT--AA
1 AAT-TTAAAA
*
32928346 AATTTATAA
1 AATTTAAAA
32928355 AATTTA
1 AATTTA
32928361 TAGAAAAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
7 2 0.06
8 5 0.15
9 26 0.76
10 1 0.03
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (9 bp):
AATTTAAAA
Found at i:32935544 original size:3 final size:3
Alignment explanation
Indices: 32935536--32935576 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
32935526 AACACCAAAT
32935536 TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA T
32935577 ACTACTTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:32935562 original size:22 final size:22
Alignment explanation
Indices: 32935534--32935576 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
32935524 GAAACACCAA
32935534 ATTTATTATTATTATTATTATT
1 ATTTATTATTATTATTATTATT
32935556 ATTTATTATTATTATTATTAT
1 ATTTATTATTATTATTATTAT
32935577 ACTACTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
ATTTATTATTATTATTATTATT
Found at i:32935563 original size:19 final size:19
Alignment explanation
Indices: 32935539--32935576 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32935529 ACCAAATTTA
32935539 TTATTATTATTATTATTAT
1 TTATTATTATTATTATTAT
32935558 TTATTATTATTATTATTAT
1 TTATTATTATTATTATTAT
32935577 ACTACTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTATTATTATTATTAT
Found at i:32937629 original size:26 final size:25
Alignment explanation
Indices: 32937600--32937661 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
32937590 TAAAAACTTT
32937600 TTTAGATTTTGTTGATTTTTT-AAATA
1 TTTAGATTTT-TT-ATTTTTTAAAATA
*
32937626 TTTAAATATTTTTATTTTTTAAAATA
1 TTTAGAT-TTTTTATTTTTTAAAATA
32937652 TTTATGATTT
1 TTTA-GATTT
32937662 ATAAAATGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 7 0.23
26 19 0.61
27 5 0.16
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (25 bp):
TTTAGATTTTTTATTTTTTAAAATA
Found at i:32939197 original size:23 final size:20
Alignment explanation
Indices: 32939169--32939221 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 20
32939159 TCATATAAAA
*
32939169 ATTAAATTTTTAATAATATAAT
1 ATTAAATTATTAA-AATAT-AT
32939191 ATGTAAA-TATTAAAATATAT
1 AT-TAAATTATTAAAATATAT
32939211 ATTAAATTATT
1 ATTAAATTATT
32939222 CATATTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.14
20 8 0.29
21 5 0.18
22 7 0.25
23 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
ATTAAATTATTAAAATATAT
Found at i:32939911 original size:24 final size:24
Alignment explanation
Indices: 32939882--32939935 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
32939872 TATATTTTAA
* *
32939882 ATATTTAGTATTTATTGGTATAAT
1 ATATTTAGTATTTATTAGCATAAT
*
32939906 ATATTTATTATTTATTAGCATAAT
1 ATATTTAGTATTTATTAGCATAAT
*
32939930 TTATTT
1 ATATTT
32939936 GACTTAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (24 bp):
ATATTTAGTATTTATTAGCATAAT
Found at i:32944636 original size:26 final size:27
Alignment explanation
Indices: 32944580--32944639 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
32944570 TGGAGGAAGC
32944580 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
32944607 GTTCTGGTGGCTCTGCCAC-AATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
32944633 GTTCTGG
1 GTTCTGG
32944640 CACCCATGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 14 0.44
27 18 0.56
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:32952031 original size:82 final size:81
Alignment explanation
Indices: 32951918--32952067 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
32951908 AAATTGTACA
* *
32951918 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32951982 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32951999 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
32952064 TGCG
65 TGCG
32952068 GGTTGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 46 0.74
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32952085 original size:82 final size:81
Alignment explanation
Indices: 32951914--32952094 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32951904 GATTAAATTG
* *
32951914 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32951979 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32951995 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
** **
32952059 AAGTGTGCGGGTTGATTA
64 AAGTGTGCGAATTGACCA
*
32952077 TATAGCACTAAGTGTGCG
1 TACAGCACTAAGTGTGCG
32952095 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32952095 original size:27 final size:27
Alignment explanation
Indices: 32951917--32952094 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32951907 TAAATTGTAC
32951917 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32951944 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32951970 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32951998 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32952026 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
** * *
32952053 AGCACTAAGTGTGCGGGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
32952080 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32952095 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32952105 original size:27 final size:27
Alignment explanation
Indices: 32952052--32952105 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
32952042 TTTGATTACG
** * *
32952052 TAGCACTAAGTGTGCGGGTTGATTATA
1 TAGCACTAAGTGTGCGGACTCAATATA
32952079 TAGCACTAAGTGTGCGGACTCAATATA
1 TAGCACTAAGTGTGCGGACTCAATATA
32952106 CATTCGTGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGGACTCAATATA
Found at i:32959999 original size:27 final size:27
Alignment explanation
Indices: 32959968--32960145 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32959958 TAAATTGTAC
32959968 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32959995 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32960021 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32960049 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32960077 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32960104 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32960131 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32960146 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32960082 original size:82 final size:81
Alignment explanation
Indices: 32959969--32960124 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32959959 AAATTGTACA
* *
32959969 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32960033 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32960050 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32960115 TGCGAGTTGA
65 TGCGAATTGA
32960125 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32960136 original size:82 final size:81
Alignment explanation
Indices: 32959965--32960145 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32959955 GATTAAATTG
* *
32959965 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32960030 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32960046 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32960110 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32960128 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32960146 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32963428 original size:28 final size:28
Alignment explanation
Indices: 32963351--32963428 Score: 68
Period size: 28 Copynumber: 2.8 Consensus size: 28
32963341 GAGACCTCAG
* **
32963351 AGGGT-AAAATGACCAAAATACCCCTAA
1 AGGGTAAAAATGACTATTATACCCCTAA
* *
32963378 AGGGTAAAAATTACTATTCTACCCCTAA
1 AGGGTAAAAATGACTATTATACCCCTAA
* ** *
32963406 TGGGTGGAAATGACTGTTATACC
1 AGGGTAAAAATGACTATTATACC
32963429 GTAGAGGTAG
Statistics
Matches: 39, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
27 5 0.13
28 34 0.87
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (28 bp):
AGGGTAAAAATGACTATTATACCCCTAA
Found at i:32963595 original size:27 final size:27
Alignment explanation
Indices: 32963565--32963628 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
32963555 TACTGTTCTG
32963565 GTGGCTTTGCCACGTATT-CTGATATTA
1 GTGGCTTTGCCACGT-TTACTGATATTA
* *
32963592 GTGGCTATGCCACGTTTACTGCTATTA
1 GTGGCTTTGCCACGTTTACTGATATTA
**
32963619 GCAGCTTTGC
1 GTGGCTTTGC
32963629 TGCGTTACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.06
27 29 0.94
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (27 bp):
GTGGCTTTGCCACGTTTACTGATATTA
Found at i:32964199 original size:23 final size:23
Alignment explanation
Indices: 32964171--32964215 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
32964161 CCATTTTTAG
*
32964171 CTCGTTGGAGCTTATTGTTTCAA
1 CTCGTTGGAGCTTACTGTTTCAA
32964194 CTCGTTGGAGCTTACTGTTTCA
1 CTCGTTGGAGCTTACTGTTTCA
32964216 GCTCATAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (23 bp):
CTCGTTGGAGCTTACTGTTTCAA
Found at i:32964278 original size:23 final size:23
Alignment explanation
Indices: 32964178--32964279 Score: 98
Period size: 23 Copynumber: 4.4 Consensus size: 23
32964168 TAGCTCGTTG
* * ** *
32964178 GAGCTTATTGTTTCAACTCGTTG
1 GAGCTTACTGTTTCAGCTCAATA
32964201 GAGCTTACTGTTTCAGCTC-ATAA
1 GAGCTTACTGTTTCAGCTCAAT-A
* * **
32964224 GAGTTTAATGTTTTCAGCTCAGCA
1 GAGCTTACTG-TTTCAGCTCAATA
32964248 GAGCTTACTGTTTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
32964271 GAGCTTACT
1 GAGCTTACT
32964280 ATCCATCAAC
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
22 1 0.02
23 45 0.70
24 18 0.28
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:32964460 original size:20 final size:20
Alignment explanation
Indices: 32964421--32964505 Score: 118
Period size: 20 Copynumber: 4.3 Consensus size: 20
32964411 GACATAGAAT
*
32964421 CTATTTAAATGGAT-AAATA
1 CTATTTATATGGATGAAATA
*
32964440 CTGTTTATATGGATGAAATA
1 CTATTTATATGGATGAAATA
32964460 CTATTTATATGGATGAAATA
1 CTATTTATATGGATGAAATA
* **
32964480 TTATTTATATGGATGAGCTA
1 CTATTTATATGGATGAAATA
32964500 CTATTT
1 CTATTT
32964506 GCAAATGGTG
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
19 12 0.21
20 46 0.79
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (20 bp):
CTATTTATATGGATGAAATA
Found at i:32967587 original size:46 final size:46
Alignment explanation
Indices: 32967438--32967607 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
32967428 GGACTATTGT
* * * *
32967438 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GACGA
* ***
32967484 GAGCCAGTGAAAGACCATG-CTCGGGACATGGCATCGATAGT-GAGACGA
1 GAGCCAGTGTAAGA-CATGTCT-GGGACAT-GCATC-AGCCTCGAGACGA
* *
32967532 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACG-A
32967579 -AGCCAGTGTAAGACATGTCTGGGACATGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGC
32967608 GTTGGCTACG
Statistics
Matches: 101, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
45 2 0.02
46 52 0.51
47 23 0.23
48 23 0.23
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.31, T:0.20
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGA
Found at i:32974062 original size:79 final size:82
Alignment explanation
Indices: 32973951--32974135 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
32973941 GCTACTCGTT
* *
32973951 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32974014 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
32974031 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
32974094 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
32974111 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32974136 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:32974135 original size:40 final size:40
Alignment explanation
Indices: 32973932--32974135 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
32973922 CGGAATTTAA
** *
32973932 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32973972 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32974012 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32974051 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32974091 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32974131 CCGGA
1 CCGGA
32974136 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32981045 original size:79 final size:82
Alignment explanation
Indices: 32980934--32981118 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
32980924 GCTACTCGTT
* *
32980934 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32980997 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
32981014 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
32981077 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
32981094 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32981119 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:32981118 original size:40 final size:40
Alignment explanation
Indices: 32980915--32981118 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
32980905 CGGAATTTAA
** *
32980915 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32980955 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32980995 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32981034 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32981074 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32981114 CCGGA
1 CCGGA
32981119 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32988697 original size:15 final size:16
Alignment explanation
Indices: 32988672--32988701 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32988662 AACCTAGCTA
32988672 TCATCTTTTCTTTCTT
1 TCATCTTTTCTTTCTT
32988688 TCAT-TTTTCTTTCT
1 TCATCTTTTCTTTCT
32988702 CCAACAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (16 bp):
TCATCTTTTCTTTCTT
Found at i:32989657 original size:46 final size:44
Alignment explanation
Indices: 32989599--32989707 Score: 130
Period size: 46 Copynumber: 2.4 Consensus size: 44
32989589 ATGAGACGAG
** *
32989599 AGCTAGTGTAAGACATGTCTGGGACATGAATCAGCCTCAAGA-TGTA
1 AGCTAGTGTAAGACATGTCAAGGACATGAATC-GACT-AAGAGT-TA
* *
32989645 AGCTAGTGTAAGACATGTCAAGGACATGCATCGACTATGAGTTA
1 AGCTAGTGTAAGACATGTCAAGGACATGAATCGACTAAGAGTTA
32989689 AGCTAGTGTAAGACCATGT
1 AGCTAGTGTAAGA-CATGT
32989708 TCGGGGCATG
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
44 18 0.32
45 9 0.16
46 29 0.52
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (44 bp):
AGCTAGTGTAAGACATGTCAAGGACATGAATCGACTAAGAGTTA
Found at i:32989670 original size:93 final size:91
Alignment explanation
Indices: 32989505--32989707 Score: 207
Period size: 93 Copynumber: 2.2 Consensus size: 91
32989495 GGACTATTGT
* * * *
32989505 GAGCTAGTGTAAGACATGTCTGGGAGATGTATCGGCCACATGACAAGAGCCAGTGTAGACCATGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGAATCAGCCACAAGACAAGAGCCAGTGTAGACCATGT
* *
32989570 TCGGGACATGGCATCGGCAATGAGACGA
66 TCAGGACAT-GCATCGACAATGAG-CGA
* ** *
32989598 GAGCTAGTGTAAGACATGTCTGGGACATGAATCAGCCTCAAGATGTA-AGCTAGTGTAAGA-CAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGAATCAGCCACAAGA-CAAGAGCCAGTGT-AGACCAT
* **
32989661 G-TCAAGGACATGCATCGACTATGAGTTA
64 GTTC-AGGACATGCATCGACAATGAGCGA
32989689 -AGCTAGTGTAAGACCATGT
1 GAGCTAGTGTAAGA-CATGT
32989708 TCGGGGCATG
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
90 13 0.14
91 6 0.06
92 14 0.15
93 56 0.60
94 4 0.04
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (91 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGAATCAGCCACAAGACAAGAGCCAGTGTAGACCATGT
TCAGGACATGCATCGACAATGAGCGA
Found at i:32996546 original size:10 final size:10
Alignment explanation
Indices: 32996531--32996555 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32996521 TAAGGTATGA
32996531 ATTTTGTTCG
1 ATTTTGTTCG
32996541 ATTTTGTTCG
1 ATTTTGTTCG
32996551 ATTTT
1 ATTTT
32996556 TATGTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.08, G:0.16, T:0.64
Consensus pattern (10 bp):
ATTTTGTTCG
Found at i:32996958 original size:22 final size:21
Alignment explanation
Indices: 32996933--32996979 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 21
32996923 CTGTGTGGTC
*
32996933 ACACATGCCCATGTGGTTTGGG
1 ACACA-GCCCATGTGGCTTGGG
32996955 ACAC-GCCCATGTGGCTTGGG
1 ACACAGCCCATGTGGCTTGGG
32996975 ACACA
1 ACACA
32996980 CCCGTGTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 19 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (21 bp):
ACACAGCCCATGTGGCTTGGG
Found at i:32996962 original size:20 final size:20
Alignment explanation
Indices: 32996939--32996978 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
32996929 GGTCACACAT
*
32996939 GCCCATGTGGTTTGGGACAC
1 GCCCATGTGGCTTGGGACAC
32996959 GCCCATGTGGCTTGGGACAC
1 GCCCATGTGGCTTGGGACAC
32996979 ACCCGTGTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.23
Consensus pattern (20 bp):
GCCCATGTGGCTTGGGACAC
Found at i:33006945 original size:49 final size:47
Alignment explanation
Indices: 33006826--33006990 Score: 151
Period size: 49 Copynumber: 3.5 Consensus size: 47
33006816 TAATGCTAAT
* * * *
33006826 GCCATGTCCCAGACATGGTCTTACAATGGCTCATCCATCAAGTCAAT
1 GCCATGTCCCAGACATGGTCTTACAATGACTCATCAATCAAGCCAAC
* *
33006873 GCCATGTCCCAGACATGGTCTTACATTGACT-ATCGAAATCGAGGCCAAC
1 GCCATGTCCCAGACATGGTCTTACAATGACTCATC--AATC-AAGCCAAC
* * * * * *
33006922 GCCATGCCCCAGACATGGTCTTACACTGACACATC--TCGTAGTCAAT
1 GCCATGTCCCAGACATGGTCTTACAATGACTCATCAATC-AAGCCAAC
33006968 G-CATGTCCCAGACAT-GTCTTACA
1 GCCATGTCCCAGACATGGTCTTACA
33006991 CTGGCTTACA
Statistics
Matches: 100, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
44 8 0.08
45 13 0.13
46 11 0.11
47 29 0.29
48 3 0.03
49 33 0.33
50 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACAATGACTCATCAATCAAGCCAAC
Found at i:33007022 original size:46 final size:46
Alignment explanation
Indices: 33006823--33007090 Score: 233
Period size: 46 Copynumber: 5.7 Consensus size: 46
33006813 GTATAATGCT
*
33006823 AATGCCATGTCCCAGACATGGTCTTACAATGGCT-CATCCATCAAGTC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTACAT--ATCAAGTC
* * * * *
33006870 AATGCCATGTCCCAGACATGGTCTTACATTGACTATCGAAATCGAGGCC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTA-C-ATATC-AAGTC
* * * * *
33006919 AACGCCATGCCCCAGACATGGTCTTACACTGAC-ACATCTCGTAGTC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTACATATC-AAGTC
33006965 AATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATATCAAGGTC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATATCAA-GTC
* * * * * * *
33007011 GATG-CATGTCCCAAACAT-GTCTTACACTAGTTCCCATCTCATTGTC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCT-ACATATCA-AGTC
*
33007057 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCT
33007091 CACAAATAAC
Statistics
Matches: 182, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
44 12 0.07
45 15 0.08
46 58 0.32
47 46 0.25
48 16 0.09
49 34 0.19
50 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (46 bp):
AATGCCATGTCCCAGACATGGTCTTACACTGGCTACATATCAAGTC
Found at i:33014073 original size:48 final size:48
Alignment explanation
Indices: 33014014--33014333 Score: 267
Period size: 48 Copynumber: 6.7 Consensus size: 48
33014004 TATGTGCGCT
* * *
33014014 AGTGTAAGACCATGTCTAGGACATGGCATTGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
* * * * ** ** *
33014062 AGTGTAAGACCATATTTGGAACATGGCATCGACGTTTTTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
*
33014110 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATA--AGTGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TGATATGAGAGC-C
* * *
33014157 TAGTGTAAGACCATGTCTGGGACGTGGCATCTGCCAT-ATTATGGGAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGA-TATGAGAGCC
* * * * *
33014206 AGTGTAAGACTATGTCGGGGACATGGCATCGG-CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TGATATGAGAGCC
* * ** * * *
33014254 AGTGTTATACCATGTCTGGGGTATGGCATCAGCC-TCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-GATATGAGAGCC
* *
33014302 AGTGTAA-ACCATGTTTGGAACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
33014334 AATTCACCCT
Statistics
Matches: 210, Mismatches: 51, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
46 4 0.02
47 25 0.12
48 173 0.82
49 5 0.02
50 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
Found at i:33014266 original size:144 final size:144
Alignment explanation
Indices: 33014001--33014283 Score: 329
Period size: 144 Copynumber: 2.0 Consensus size: 144
33013991 AACATTTCAG
* *
33014001 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATTGGCCACGATATGAGAGCCAGTG
1 TGATAAGTGCACTAGTGTAAGACCATGTCTAGGACATGGCATTGGCCACGATATGAGAGCCAGTG
** * ** *
33014066 TAAGACCATATTTGGAACATGGCATCGACGTTTTTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
66 TAAGACCATATCGGGAACATGGCATCGACGATTGAGCGAGAGCCAGTGTAAGACCATGTCTGGGA
33014131 CATGGCATCGGCAT
131 CATGGCATCGGCAT
* * * *
33014145 TGATAAGTGCACTAGTGTAAGACCATGTCTGGGACGTGGCATCT-GCCA-TATTATGGGAGCCAG
1 TGATAAGTGCACTAGTGTAAGACCATGTCTAGGACATGGCAT-TGGCCACGA-TATGAGAGCCAG
* * * * * * *
33014208 TGTAAGACTATGTCGGGGACATGGCATCGGC-ATTGAGACGAGAGCTAGTGTTATACCATGTCTG
64 TGTAAGACCATATCGGGAACATGGCATCGACGATTGAG-CGAGAGCCAGTGTAAGACCATGTCTG
**
33014272 GGGTATGGCATC
128 GGACATGGCATC
33014284 AGCCTCGACA
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
143 4 0.03
144 110 0.96
145 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (144 bp):
TGATAAGTGCACTAGTGTAAGACCATGTCTAGGACATGGCATTGGCCACGATATGAGAGCCAGTG
TAAGACCATATCGGGAACATGGCATCGACGATTGAGCGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCAT
Found at i:33021661 original size:100 final size:101
Alignment explanation
Indices: 33021472--33021665 Score: 318
Period size: 100 Copynumber: 1.9 Consensus size: 101
33021462 TAGCCGAAGC
* * * * *
33021472 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATGTA
1 TATCAGGTACGCATAGTAACCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTA
33021537 GTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
66 GTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
* *
33021573 TATCAGGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTACACGTA
1 TATCAGGTACGCATAGTAACCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTA
33021637 GTAGCCTGCACTTAGTACTACACACGTGA
66 GTAGCCTGCACTTAGTACTACACACGTGA
33021666 CCTCACAATA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
100 44 0.51
101 42 0.49
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
TATCAGGTACGCATAGTAACCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTA
GTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
Found at i:33027361 original size:48 final size:48
Alignment explanation
Indices: 33027305--33027571 Score: 281
Period size: 48 Copynumber: 5.6 Consensus size: 48
33027295 TGCTAATGTT
* *
33027305 AGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAGTGAA
1 AGACCATGTCTGGGACATGGCATCGG-CATTGATATGAGAGCCAGTGTA
* ** * * * *
33027353 AGACCATGT-TGGGACATTGCATCAACGA-TGTTGTGAGAACCAATGTA
1 AGACCATGTCTGGGACATGGCATCGGC-ATTGATATGAGAGCCAGTGTA
* * * *
33027400 AGACCATGTCTGGGACATGGCATCGGCATTAATATGTGCGCTAGTGTA
1 AGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTA
* * *
33027448 AGACCATTTCTGGGACATGGCATCGGCATTGAGACGAGAGCCAGTGTA
1 AGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTA
* * * * *
33027496 AGGCCATGTCTGGGGCATGGCATCGGCATTGACAAGTGAGCCAGTGTA
1 AGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTA
*
33027544 AGACCATG-CTTGGAACATGGCATCGGCA
1 AGACCATGTC-TGGGACATGGCATCGGCA
33027572 ATTCACCCTA
Statistics
Matches: 179, Mismatches: 36, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
46 1 0.01
47 38 0.21
48 140 0.78
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (48 bp):
AGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTA
Found at i:33029106 original size:48 final size:48
Alignment explanation
Indices: 33028999--33029151 Score: 192
Period size: 48 Copynumber: 3.3 Consensus size: 48
33028989 GGGGTGTTAC
* *
33028999 ATCACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGG
1 ATCACATGTCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
** * *
33029047 ATCGTAGGTCGATGCCAATGCCATGTCCCCGACATGGTCTTACATGGG
1 ATCACATGTCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
* *
33029095 ATCACATGTCGATGCCGAT---A-G-CCCAG-CTTGGTCTTACATGGG
1 ATCACATGTCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
33029137 ATCACATGTCGATGC
1 ATCACATGTCGATGC
33029152 TGATAGCCTA
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 30 0.32
43 4 0.04
44 1 0.01
45 1 0.01
48 57 0.61
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (48 bp):
ATCACATGTCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
Found at i:33029143 original size:42 final size:43
Alignment explanation
Indices: 33029080--33029177 Score: 171
Period size: 42 Copynumber: 2.3 Consensus size: 43
33029070 TGTCCCCGAC
33029080 ATGGTCTTACATGGGATCACATGTCGATGCCGATAGCCCAGCT
1 ATGGTCTTACATGGGATCACATGTCGATGCCGATAGCCCAGCT
* *
33029123 -TGGTCTTACATGGGATCACATGTCGATGCTGATAGCCTAGCT
1 ATGGTCTTACATGGGATCACATGTCGATGCCGATAGCCCAGCT
33029165 ATGGTCTTACATG
1 ATGGTCTTACATG
33029178 AAATTAAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
42 40 0.77
43 12 0.23
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACATGGGATCACATGTCGATGCCGATAGCCCAGCT
Found at i:33033157 original size:15 final size:15
Alignment explanation
Indices: 33033133--33033172 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
33033123 TCCTTTAATT
33033133 CTAT-CGGAGCCATC
1 CTATACGGAGCCATC
33033147 CTATACGGAGCCATC
1 CTATACGGAGCCATC
33033162 CTATACGGAGC
1 CTATACGGAGC
33033173 AATCAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.16
15 21 0.84
ACGTcount: A:0.25, C:0.33, G:0.23, T:0.20
Consensus pattern (15 bp):
CTATACGGAGCCATC
Found at i:33038319 original size:73 final size:73
Alignment explanation
Indices: 33038207--33038389 Score: 330
Period size: 73 Copynumber: 2.5 Consensus size: 73
33038197 AAACAAATTT
* * **
33038207 GCACACTTAGTGCCGTACTATTCCGCACACATAGTGCCTTGAAAGTTTATCTCGTATGTTGACAT
1 GCACACATAGTGCCATACTACACCGCACACATAGTGCCTTGAAAGTTTATCTCGTATGTTGACAT
33038272 TCAAATCA
66 TCAAATCA
33038280 GCACACATAGTGCCATACTACACCGCACACATAGTGCCTTGAAAGTTTATCTCGTATGTTGACAT
1 GCACACATAGTGCCATACTACACCGCACACATAGTGCCTTGAAAGTTTATCTCGTATGTTGACAT
33038345 TCAAATCA
66 TCAAATCA
33038353 GCACACATAGTGCCATACTACACCGCACACATAGTGC
1 GCACACATAGTGCCATACTACACCGCACACATAGTGC
33038390 TAATGTACAC
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 106 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (73 bp):
GCACACATAGTGCCATACTACACCGCACACATAGTGCCTTGAAAGTTTATCTCGTATGTTGACAT
TCAAATCA
Found at i:33048239 original size:40 final size:40
Alignment explanation
Indices: 33048141--33048364 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
33048131 TCCTCGTTCA
* * * * *
33048141 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
33048180 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
33048220 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
33048260 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
33048300 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
33048340 AAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGGA-CTTAACCCGGAT
33048365 ATATTCACTT
Statistics
Matches: 169, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 37 0.22
40 132 0.78
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:33048387 original size:80 final size:80
Alignment explanation
Indices: 33048144--33048403 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 80
33048134 TCGTTCAAAT
* * * * * * * *
33048144 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
33048208 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
* * *
33048223 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
33048288 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
* * *
33048303 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
*
33048367 ATTC-ACTTAGCAC-AAA
65 A-ACAAC-TAGCACGAAA
* *
33048383 GCCTTCGAGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
33048404 CAGCATTCAC
Statistics
Matches: 160, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
79 34 0.21
80 120 0.75
81 6 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ACAACTAGCACGAAA
Found at i:33048387 original size:120 final size:118
Alignment explanation
Indices: 33048139--33048403 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 118
33048129 GCTCCTCGTT
* * **
33048139 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACATAACCCGGA
* * * *
33048204 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
65 TTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * *
33048258 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAACAACTCACAC-AATGCCTTCGGGACATAACCCGG
** * * * *
33048323 ATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
64 ATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
*
33048379 CAAAGCCTTCGAGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
33048404 CAGCATTCAC
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
119 34 0.28
120 82 0.68
121 5 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
Done.