Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 109 of 255
Found at i:34504590 original size:12 final size:13
Alignment explanation
Indices: 34504573--34504604 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
34504563 GCAAATGTTA
34504573 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
34504585 AGTTTTGATGCAT
1 AGTTTTGATGCAT
34504598 -GTTTTGA
1 AGTTTTGA
34504605 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:34508915 original size:22 final size:23
Alignment explanation
Indices: 34508876--34508918 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
34508866 AAAGTCCTAC
*
34508876 CCGTCCATCCTCTACACTCCACT
1 CCGTCCAGCCTCTACACTCCACT
34508899 CCGTCCAGCC-CTACACTCCA
1 CCGTCCAGCCTCTACACTCCA
34508919 TGTAGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.19, C:0.53, G:0.07, T:0.21
Consensus pattern (23 bp):
CCGTCCAGCCTCTACACTCCACT
Found at i:34516075 original size:13 final size:14
Alignment explanation
Indices: 34516057--34516088 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
34516047 GGTCTACTTA
34516057 ACTGAACTGGATT-
1 ACTGAACTGGATTC
34516070 ACTGAACTGGATTC
1 ACTGAACTGGATTC
34516084 ACTGA
1 ACTGA
34516089 TGGCATAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (14 bp):
ACTGAACTGGATTC
Found at i:34517086 original size:37 final size:37
Alignment explanation
Indices: 34517033--34517135 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
34517023 CGAATAGTCC
*
34517033 CCACACGTAGTTATCGGGTCTTACTCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACTCGGACAAAATCT
* *
34517070 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACTCGGACAAAATCT
34517107 CCACACGTAGTCATCGGGTCTTACTCGGA
1 CCACACGTAGTCATCGGGTCTTACTCGGA
34517136 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACTCGGACAAAATCT
Found at i:34517334 original size:48 final size:48
Alignment explanation
Indices: 34517276--34517606 Score: 504
Period size: 48 Copynumber: 6.9 Consensus size: 48
34517266 ATATACACAC
* *
34517276 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTATCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
34517324 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
34517372 ATCTCATTCATATTTCACACTAGCCATTCGACTTTACCACGTGTACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
34517420 ATCTCATTCATATTTTACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
34517468 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
34517516 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCTCATAT-C-C
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
34517562 ATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
34517607 TACGCTTCCA
Statistics
Matches: 260, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
46 41 0.16
47 1 0.00
48 218 0.84
ACGTcount: A:0.29, C:0.28, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:34517650 original size:47 final size:46
Alignment explanation
Indices: 34517579--34517817 Score: 239
Period size: 47 Copynumber: 5.1 Consensus size: 46
34517569 ACACATTTCG
* * * *
34517579 CATTAGCCATTCGGCTTTACCACATATAT-ACGCTTC-CACGTTCGTCA
1 CATTGGCCATTCGGCCTTATCACATATATCACG-TTCTCA--TTCATCA
** *
34517626 CATTGGCCATTTTGCCTTATCACATATATGCATGTTCTCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CACGTTCTCATTCATCA
* * ** *
34517673 CATTGGCCATTCGGCCTTATCACATATATTTATGTTCAAATTCACCA
1 CATTGGCCATTCGGCCTTATCACATATA-TCACGTTCTCATTCATCA
* * *
34517720 CATTGGCCATTCGGCCTTATCACACATATCCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CACGTTCTCATTCATCA
* * *
34517767 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CACGTTCTCATTCATCA
34517814 CATT
1 CATT
34517818 AAATCCTAAA
Statistics
Matches: 169, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
46 1 0.01
47 160 0.95
48 4 0.02
49 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (46 bp):
CATTGGCCATTCGGCCTTATCACATATATCACGTTCTCATTCATCA
Found at i:34517682 original size:94 final size:92
Alignment explanation
Indices: 34517579--34517795 Score: 272
Period size: 94 Copynumber: 2.3 Consensus size: 92
34517569 ACACATTTCG
* * * ** ** **
34517579 CATTAGCCATTCGGCTTTACCACATATATACGCTTCCACGTTCGTCACATTGGCCATTTTGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATACG-TT-CAAATTCACCACATTGGCCATTCGGCCTT
* * *
34517644 ATCACATATATGCATGTTCTCATTCATCA
64 ATCACACATATCCATGTTCACATTCATCA
*
34517673 CATTGGCCATTCGGCCTTATCACATATATTTATGTTCAAATTCACCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATA--TACGTTCAAATTCACCACATTGGCCATTCGGCCTT
34517738 ATCACACATATCCATGTTCACATTCATCA
64 ATCACACATATCCATGTTCACATTCATCA
*
34517767 CATTGGCCATTCGGCCTTATCACACATAT
1 CATTGGCCATTCGGCCTTATCACATATAT
34517796 GCATGTTCAC
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
92 1 0.01
94 101 0.94
95 2 0.02
96 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.35
Consensus pattern (92 bp):
CATTGGCCATTCGGCCTTATCACATATATACGTTCAAATTCACCACATTGGCCATTCGGCCTTAT
CACACATATCCATGTTCACATTCATCA
Found at i:34517766 original size:25 final size:25
Alignment explanation
Indices: 34517738--34517815 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
34517728 ATTCGGCCTT
34517738 ATCACACATATCCATGTTCACATTC
1 ATCACACATATCCATGTTCACATTC
* ** * *
34517763 ATCACA-TTGGCCA--TTCGGCCTT-
1 ATCACACATATCCATGTTC-ACATTC
*
34517785 ATCACACATATGCATGTTCACATTC
1 ATCACACATATCCATGTTCACATTC
34517810 ATCACA
1 ATCACA
34517816 TTAAATCCTA
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 9 0.24
23 6 0.16
24 7 0.19
25 15 0.41
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (25 bp):
ATCACACATATCCATGTTCACATTC
Found at i:34517790 original size:22 final size:22
Alignment explanation
Indices: 34517718--34517790 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
34517708 TCAAATTCAC
34517718 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCGGCCTTAT
* ** * *
34517740 CACACATATCCATGTTC-ACATTCAT
1 CACA-TTGGCCA--TTCGGCCTT-AT
34517765 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCGGCCTTAT
34517787 CACA
1 CACA
34517791 CATATGCATG
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 13 0.36
23 7 0.19
24 7 0.19
25 9 0.25
ACGTcount: A:0.25, C:0.33, G:0.12, T:0.30
Consensus pattern (22 bp):
CACATTGGCCATTCGGCCTTAT
Found at i:34517792 original size:24 final size:24
Alignment explanation
Indices: 34517718--34517793 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
34517708 TCAAATTCAC
34517718 CACATTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGGCCTTATCA
* *
34517742 CACATAT--CCATGTTC--ACAT-TCA
1 CACAT-TGGCCA--TTCGGCCTTATCA
34517764 TCACATTGGCCATTCGGCCTTATCA
1 -CACATTGGCCATTCGGCCTTATCA
34517789 CACAT
1 CACAT
34517794 ATGCATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
22 7 0.18
23 10 0.26
24 15 0.38
25 7 0.18
ACGTcount: A:0.25, C:0.33, G:0.12, T:0.30
Consensus pattern (24 bp):
CACATTGGCCATTCGGCCTTATCA
Found at i:34517802 original size:94 final size:94
Alignment explanation
Indices: 34517624--34517817 Score: 298
Period size: 94 Copynumber: 2.1 Consensus size: 94
34517614 CCACGTTCGT
** * * *
34517624 CACATTGGCCATTTTGCCTTATCACATATATGCATGTTCTCATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATCCATGTTCACATTCATCACATTGGCCATTCGGCC
* **
34517689 TTATCACATATATTTATGTTCAAATTCAC
66 TTATCACACATATGCATGTTCAAATTCAC
34517718 CACATTGGCCATTCGGCCTTATCACACATATCCATGTTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATCCATGTTCACATTCATCACATTGGCCATTCGGCC
* *
34517783 TTATCACACATATGCATGTTCACATTCAT
66 TTATCACACATATGCATGTTCAAATTCAC
34517812 CACATT
1 CACATT
34517818 AAATCCTAAA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 90 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATCCATGTTCACATTCATCACATTGGCCATTCGGCC
TTATCACACATATGCATGTTCAAATTCAC
Found at i:34521593 original size:40 final size:40
Alignment explanation
Indices: 34521543--34521774 Score: 338
Period size: 40 Copynumber: 5.8 Consensus size: 40
34521533 ACACATCACA
* * *
34521543 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
* * * * *
34521583 AGTACGAATGCTCTTCGGGACTTAACCCTGATATAACTCC
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
*
34521623 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAATACC
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
* * *
34521663 AGCACGTATGCTCTTCGAGACTTAGCCCTGATATAACTCC
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
34521703 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
* *
34521743 AGCACGTATGCTCTTCGGGACTTAGCCCGGAT
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGAT
34521775 CATATATAAC
Statistics
Matches: 171, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
Found at i:34521767 original size:80 final size:80
Alignment explanation
Indices: 34521543--34521770 Score: 384
Period size: 80 Copynumber: 2.9 Consensus size: 80
34521533 ACACATCACA
* * * * * *
34521543 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACACTAGTACGAATGCTCTTCGGGACTTAA
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAG
34521608 CCCTGATATAACTCC
66 CCCTGATATAACTCC
* *
34521623 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAATACCAGCACGTATGCTCTTCGAGACTTAG
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAG
34521688 CCCTGATATAACTCC
66 CCCTGATATAACTCC
34521703 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAG
34521768 CCC
66 CCC
34521771 GGATCATATA
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 138 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (80 bp):
AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTTAG
CCCTGATATAACTCC
Found at i:34523111 original size:37 final size:37
Alignment explanation
Indices: 34523058--34523160 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
34523048 CGAATAGTCC
*
34523058 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
34523095 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
34523132 CCACACGTAGTCATCGGGTCTTACTCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
34523161 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:34523359 original size:48 final size:48
Alignment explanation
Indices: 34523301--34523507 Score: 333
Period size: 48 Copynumber: 4.3 Consensus size: 48
34523291 ATATACACAC
* *
34523301 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTATCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
34523349 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
34523397 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACGTGTACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
34523445 ATCTCATTCATATTTTACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
34523493 ATCTCATATATATTT
1 ATCTCATACATATTT
34523508 TGTAACACCC
Statistics
Matches: 148, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 148 1.00
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:34524920 original size:37 final size:37
Alignment explanation
Indices: 34524870--34524948 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
34524860 TTATTACGAA
* *
34524870 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
34524907 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
34524944 GTCTT
1 GTCTT
34524949 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:34525144 original size:47 final size:47
Alignment explanation
Indices: 34525068--34525178 Score: 141
Period size: 47 Copynumber: 2.4 Consensus size: 47
34525058 CTTCGGGACT
* * * * *
34525068 TATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
34525115 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
34525162 TATCACATATATACACT
1 TATCACATATATACACT
34525179 GTCTTGGCTG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:34528773 original size:40 final size:40
Alignment explanation
Indices: 34528736--34528978 Score: 346
Period size: 40 Copynumber: 6.1 Consensus size: 40
34528726 GGTTTAGCAT
* * *
34528736 GGATATATTACTAGCACGAATGCTCTTCGGAACTTAGCCC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
* *
34528776 GGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCT
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
34528816 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
34528856 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
* * * *
34528896 GGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
* * *
34528936 GGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCC
1 GGATAT-ATCAC-TAGCACGAATGCTCCTCGGGACTTAGCCC
34528976 GGA
1 GGA
34528979 CATCATTCAA
Statistics
Matches: 185, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 171 0.92
41 8 0.04
42 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
Found at i:34529325 original size:29 final size:29
Alignment explanation
Indices: 34529286--34529364 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
34529276 CTTAATAATC
*
34529286 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
34529316 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
34529345 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
34529365 ATCTCACAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:34529407 original size:43 final size:43
Alignment explanation
Indices: 34529346--34529448 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
34529336 TGCATTTCAA
*
34529346 GCCCGCACACTTAGTGCCAATCTCACAATCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
34529389 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
34529432 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
34529449 TGAAAACCAG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:34531372 original size:37 final size:37
Alignment explanation
Indices: 34531311--34531389 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
34531301 TTATTACGAA
* * *
34531311 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
*
34531348 GTCTTACCCAGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACACGAAGTCATCGG
34531385 GTCTT
1 GTCTT
34531390 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:34531586 original size:47 final size:47
Alignment explanation
Indices: 34531508--34531902 Score: 607
Period size: 47 Copynumber: 8.4 Consensus size: 47
34531498 CCCTTCGGGA
* * * * * *
34531508 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34531555 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34531602 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
34531649 CTTATTACATATATACACTTTCACATTCGTCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34531696 CTTATCACATATATACACTTTCACATTC-TCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34531742 CTTA-CA-ACTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34531788 GTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34531835 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34531884 CTTATCACATATATACACT
1 CTTATCACATATATACACT
34531903 GTCTTGGCTG
Statistics
Matches: 323, Mismatches: 19, Indels: 12
0.91 0.05 0.03
Matches are distributed among these distances:
44 1 0.00
45 21 0.07
46 43 0.13
47 210 0.65
48 1 0.00
49 47 0.15
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34531824 original size:186 final size:187
Alignment explanation
Indices: 34531564--34531902 Score: 608
Period size: 186 Copynumber: 1.8 Consensus size: 187
34531554 CCCTGTCACA
*
34531564 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATT
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
* * *
34531629 CATCACATCGGCCATTAGGCCTTATTAC-ATATATACACTTTCACATTCGTCACATCGGCTATTA
66 CATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTA
34531693 GGCCTTATCACATATATACACTTTCACATTCTCACATCGGCTATTAGGCCTTACAAC
131 GGCCTTATCACATATATACACTTTCACATTCTCACATCGGCTATTAGGCCTTACAAC
* *
34531750 TATATACACTTTCACATTCATCACATCGGCTATTAGGCGTTATCACATATATACACTTTCACATT
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
34531815 CATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
66 CATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATT
34531880 AGGCCTTATCACATATATACACT
130 AGGCCTTATCACATATATACACT
34531903 GTCTTGGCTG
Statistics
Matches: 145, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
186 89 0.61
188 56 0.39
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (187 bp):
TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
CATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATATATACACTTTCACATTCTCACATCGGCTATTAGGCCTTACAAC
Found at i:34534389 original size:48 final size:47
Alignment explanation
Indices: 34534333--34534464 Score: 169
Period size: 46 Copynumber: 2.8 Consensus size: 47
34534323 TAGGGGTGTC
* *
34534333 ACATATTTCACACTAGCCTTTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCTTTCGGCTTTACCACATATAC-CATCTCAT
* *
34534381 ACATATTTCACATTAGCCATTT-GGCTTTACCTCATAT-CCATCTGAT
1 ACATATTTCACATTAGCC-TTTCGGCTTTACCACATATACCATCTCAT
* * *
34534427 ACACATTTCGCATTAGCCATTCGGCTTTACCACATATA
1 ACATATTTCACATTAGCCTTTCGGCTTTACCACATATA
34534465 TACACTTCCA
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
45 2 0.03
46 36 0.49
47 1 0.01
48 31 0.42
49 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.08, T:0.36
Consensus pattern (47 bp):
ACATATTTCACATTAGCCTTTCGGCTTTACCACATATACCATCTCAT
Found at i:34534532 original size:47 final size:47
Alignment explanation
Indices: 34534437--34534628 Score: 251
Period size: 47 Copynumber: 4.1 Consensus size: 47
34534427 ACACATTTCG
* * * * * * * *
34534437 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCGTCA
1 CATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTCATCA
** * *
34534484 CATTGGCCATTTTGCCTTATCTCACATATGCATGTTCTCATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
34534531 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
34534578 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
34534625 CATT
1 CATT
34534629 AAATCCTAAA
Statistics
Matches: 126, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
46 1 0.01
47 125 0.99
ACGTcount: A:0.24, C:0.29, G:0.11, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:34534554 original size:22 final size:22
Alignment explanation
Indices: 34534527--34534601 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
34534517 GTTCTCATTC
34534527 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
34534549 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
34534573 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
34534596 ATCACA
1 ATCACA
34534602 CATATGCATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:34537770 original size:29 final size:29
Alignment explanation
Indices: 34537737--34537803 Score: 134
Period size: 29 Copynumber: 2.3 Consensus size: 29
34537727 CATGTGAACA
34537737 GGCCGTGTGCCTCACACGGCCTTAGACAC
1 GGCCGTGTGCCTCACACGGCCTTAGACAC
34537766 GGCCGTGTGCCTCACACGGCCTTAGACAC
1 GGCCGTGTGCCTCACACGGCCTTAGACAC
34537795 GGCCGTGTG
1 GGCCGTGTG
34537804 TCTAAGCCGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.15, C:0.36, G:0.31, T:0.18
Consensus pattern (29 bp):
GGCCGTGTGCCTCACACGGCCTTAGACAC
Found at i:34542574 original size:27 final size:26
Alignment explanation
Indices: 34542518--34542574 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
34542508 CAACCTTATC
* * *
34542518 CCTAGGGGTATATTAGTAATTTTGCT
1 CCTAGGGGTAAATTAGTAATTTTCCA
34542544 CCTAGGGGTAAATCT-GTAAATTTTCCA
1 CCTAGGGGTAAAT-TAGT-AATTTTCCA
34542571 CCTA
1 CCTA
34542575 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATTAGTAATTTTCCA
Found at i:34557334 original size:28 final size:28
Alignment explanation
Indices: 34557269--34557392 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
34557259 GAGATTCGCG
* * * *
34557269 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
34557298 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
34557326 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
34557354 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
34557382 CTGAGTGTGCG
1 CTAAGTGTGCG
34557393 GACTTAATAT
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 73 0.83
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:34559923 original size:27 final size:27
Alignment explanation
Indices: 34559892--34560556 Score: 159
Period size: 27 Copynumber: 24.6 Consensus size: 27
34559882 TTACTTTACC
*
34559892 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
34559919 AAATTAC-CAAAGTACCCCCAATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
**
34559946 AAATTAC-CCAATA-CCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
34559971 AAATTACTGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * *
34559998 AAATTACTAAAATACCATCGATTTTATA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* **
34560026 AAATTACTGAAATA--CTACTATAAGATA
1 AAATTACTGAAATACCCT-CGATTTG-TA
* * ** *
34560053 GAATTAC-CATTTTACCCTTGA-TTG-A
1 AAATTACTGA-AATACCCTCGATTTGTA
* *** * *
34560078 CAGAATTATTGTTTTACCCTCAATTTATA
1 -A-AATTACTGAAATACCCTCGATTTGTA
* * ** **
34560107 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * * *** * *
34560134 GAAGTACCGTCTTACCCTTGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* * ** **
34560161 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * **
34560188 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
34560215 AAATTACCAAAATACCC-CTACTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* *
34560242 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
34560269 AAATTACTAAAATACCCCCTGATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* * *
34560297 AAATTACTGAAATTCCCTCAACTTGTAA
1 AAATTACTGAAATACCCTCGATTTGT-A
*
34560325 AAATTACT-AAAGTACCCTCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * ** **
34560352 GAATTA-TTATTGTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* ** **
34560379 GAATTACT-ATTTTACCCTTTATTTAG-A
1 AAATTACTGA-AATACCCTCGATTT-GTA
* ** * *
34560406 AAATTAC-CATTTTACCCTC-AATTGTG
1 AAATTACTGA-AATACCCTCGATTTGTA
* **
34560432 AAATTACTGAAATACCC-CTATAGGATA
1 AAATTACTGAAATACCCTCGATTTG-TA
* ** * *
34560459 GAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * *
34560486 AAATTACTAAAATACCACT-GGTTTGTG
1 AAATTACTGAAATACC-CTCGATTTGTA
* *
34560513 AAATTACAGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
34560540 AAATTACCAAAATACCC
1 AAATTACTGAAATACCC
34560557 CTAATTTACA
Statistics
Matches: 481, Mismatches: 120, Indels: 74
0.71 0.18 0.11
Matches are distributed among these distances:
25 19 0.04
26 33 0.07
27 356 0.74
28 70 0.15
29 3 0.01
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:34559987 original size:52 final size:53
Alignment explanation
Indices: 34559886--34560040 Score: 161
Period size: 52 Copynumber: 2.9 Consensus size: 53
34559876 AATACTTTAC
* * * *
34559886 TTTACCAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCCCAA
1 TTTACAAAATTACTAAAATA-CCTCGATTTGTAAAATTACTGAAA-TACCCCCAA
* ** * *
34559940 TTTATAAAATTAC-CCAATACCTCGATTTGTAAAATTACTGAAATACCCTCAG
1 TTTACAAAATTACTAAAATACCTCGATTTGTAAAATTACTGAAATACCCCCAA
* *
34559992 TTTGCAAAATTACTAAAATACCATCGATTTTATAAAATTACTGAAATAC
1 TTTACAAAATTACTAAAATACC-TCGA-TTTGTAAAATTACTGAAATAC
34560041 TACTATAAGA
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
52 36 0.43
53 13 0.15
54 15 0.18
55 20 0.24
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TTTACAAAATTACTAAAATACCTCGATTTGTAAAATTACTGAAATACCCCCAA
Found at i:34560204 original size:54 final size:54
Alignment explanation
Indices: 34560050--34560223 Score: 213
Period size: 54 Copynumber: 3.2 Consensus size: 54
34560040 CTACTATAAG
* * * * **
34560050 ATAGAATTACCATTTTACCCTTGATTGACAGAATTATTGTTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTATTACCCTTGATTT
* * *
34560104 ATAGAATTACCATTTTACCCTCGATTTACAGAAGTACCGTCTTACCCTTGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTATTACCCTTGATTT
* * * *
34560158 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTATTACCCTTGATTT
* *
34560212 ACAAAATTACCA
1 ATAGAATTACCA
34560224 AAATACCCCT
Statistics
Matches: 103, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.37
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTATTACCCTTGATTT
Found at i:34560231 original size:54 final size:54
Alignment explanation
Indices: 34559940--34560349 Score: 177
Period size: 54 Copynumber: 7.6 Consensus size: 54
34559930 GTACCCCCAA
* ** **
34559940 TTTATAAAATTACC-CAATA-CCTCGATTTGTAAAATTACTGAAATACCCTCAG
1 TTTATAAAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTTGG
** * * * * *
34559992 TTTGCAAAATTACTAAAATACCATCGATTTTATAAAATTACTGAAATACTACTATAAG
1 TTTATAAAATTACCAAAATACCCTCGA-TTTACAAAATTACTGAAATAC-CCT-T-GG
* *** * * * * *** ***
34560050 ---ATAGAATTACCATTTTACCCTTGATTGACAGAATTATTGTTTTACCCTCAA
1 TTTATAAAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTTGG
* *** * * * *** *
34560101 TTTATAGAATTACCATTTTACCCTCGATTTACAGAAGTACCGTCTTACCCTTGA
1 TTTATAAAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTTGG
* ***
34560155 TTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTTGG
* * ** * *
34560209 TTTACAAAATTACCAAAATACCC-CTACTTTGTAAAATTACTAAAATACCCCTGG
1 TTTATAAAATTACCAAAATACCCTCGA-TTTACAAAATTACTGAAATACCCTTGG
* * * ** * ***
34560263 TTTGTAAAATTACTAAAATACCCCCTGATTTGTAAAATTACTGAAATTCCCTCAAC
1 TTTATAAAATTACCAAAATACCCTC-GATTTACAAAATTACTGAAATACCCT-TGG
* *
34560319 TTGTA-AAAATTACTAAAGTACCCTCGATTTA
1 TT-TATAAAATTACCAAAATACCCTCGATTTA
34560350 TAGAATTATT
Statistics
Matches: 278, Mismatches: 66, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
51 1 0.00
52 11 0.04
53 8 0.03
54 170 0.61
55 62 0.22
56 23 0.08
57 1 0.00
58 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (54 bp):
TTTATAAAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTTGG
Found at i:34560296 original size:28 final size:27
Alignment explanation
Indices: 34560187--34560563 Score: 180
Period size: 27 Copynumber: 13.9 Consensus size: 27
34560177 CTCGATTTAC
* * * **
34560187 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACTAAAATACCCCTGATTTGT
*
34560214 AAAATTACCAAAATACCCCT-ACTTTGT
1 AAAATTACTAAAATACCCCTGA-TTTGT
*
34560241 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACTAAAATACCCCTGATTTGT
34560268 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATA-CCCCTGATTTGT
* * * *
34560296 AAAATTACTGAAAT-TCCCTCAACTTGT
1 AAAATTACTAAAATACCCCT-GATTTGT
* *
34560323 AAAAATTACTAAAGTA-CCCTCGATTTAT
1 -AAAATTACTAAAATACCCCT-GATTTGT
* * *** **
34560351 AGAATTATTATTGTA-CCCTCGATTTAC
1 AAAATTACTAAAATACCCCT-GATTTGT
* *** * *
34560378 AGAATTACTATTTTACCCTTTATTTAG-
1 AAAATTACTAAAATACCCCTGATTT-GT
* *** * *
34560405 AAAATTACCATTTTA-CCCTCAATTGT
1 AAAATTACTAAAATACCCCTGATTTGT
* * **
34560431 GAAATTACTGAAATACCCCT-ATAGGAT
1 AAAATTACTAAAATACCCCTGATTTG-T
* * *
34560458 AGAATTACCAAAACACCCCT-AGTTTGT
1 AAAATTACTAAAATACCCCTGA-TTTGT
* *
34560485 AAAATTACTAAAATACCACTGGTTTGT
1 AAAATTACTAAAATACCCCTGATTTGT
* *
34560512 GAAATTAC-AGAAATA-CCCTCAATTTGT
1 AAAATTACTA-AAATACCCCT-GATTTGT
* *
34560539 AAAATTACCAAAATACCCCTAATTT
1 AAAATTACTAAAATACCCCTGATTT
34560564 ACAAAATTCC
Statistics
Matches: 274, Mismatches: 59, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
25 1 0.00
26 25 0.09
27 193 0.70
28 55 0.20
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.33
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGATTTGT
Found at i:34560323 original size:55 final size:56
Alignment explanation
Indices: 34560214--34560341 Score: 147
Period size: 55 Copynumber: 2.3 Consensus size: 56
34560204 CTTGGTTTAC
* ***
34560214 AAAATTACCAAAATA-CCCCTACTTTGTAAAATTACTAAAATACCCCTGGTTTGT-
1 AAAATTACTAAAATACCCCCTACTTTGTAAAATTACTAAAATACCCCTAACTTGTA
* *
34560268 AAAATTACTAAAATACCCCCTGA-TTTGTAAAATTACTGAAAT-TCCCTCAACTTGTA
1 AAAATTACTAAAATACCCCCT-ACTTTGTAAAATTACTAAAATACCCCT-AACTTGTA
*
34560324 AAAATTACTAAAGTACCC
1 AAAATTACTAAAATACCC
34560342 TCGATTTATA
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
54 18 0.29
55 27 0.43
56 18 0.29
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (56 bp):
AAAATTACTAAAATACCCCCTACTTTGTAAAATTACTAAAATACCCCTAACTTGTA
Found at i:34560571 original size:54 final size:54
Alignment explanation
Indices: 34560480--34560604 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 54
34560470 ACACCCCTAG
* ** ***
34560480 TTTGTAAAATTACTAAAATACCACTGGTTTGTGAAATTACAGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTAATTTACAAAATTACAGAAATACCCTCAA
* * *
34560534 TTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTCCAGAAATACCCTTAA
1 TTTGTAAAATTACCAAAATACCACTAATTTACAAAATTACAGAAATACCCTCAA
* *
34560588 TTTGTAGATTTACCAAA
1 TTTGTAAAATTACCAAA
34560605 GCAGTCTTGT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTAATTTACAAAATTACAGAAATACCCTCAA
Found at i:34560580 original size:81 final size:81
Alignment explanation
Indices: 34560427--34560582 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 81
34560417 TTACCCTCAA
* * * * **
34560427 TTGTGAAATTACTGAAATACCCCTATAGGATAGAATTACCAAAACACCCCTAGTTTGTAAAATTA
1 TTGTGAAATTACAGAAATACCCCAATAGGATAAAATTACCAAAACACCCCTAATTTACAAAATTA
*
34560492 CTAAAATACCACTGGT
66 CCAAAATACCACTGGT
** *
34560508 TTGTGAAATTACAGAAATACCCTCAATTTG-TAAAATTACCAAAATACCCCTAATTTACAAAATT
1 TTGTGAAATTACAGAAATACCC-CAATAGGATAAAATTACCAAAACACCCCTAATTTACAAAATT
34560572 -CCAGAAATACC
65 ACCA-AAATACC
34560583 CTTAATTTGT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 2 0.03
81 57 0.90
82 4 0.06
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.28
Consensus pattern (81 bp):
TTGTGAAATTACAGAAATACCCCAATAGGATAAAATTACCAAAACACCCCTAATTTACAAAATTA
CCAAAATACCACTGGT
Found at i:34560592 original size:81 final size:81
Alignment explanation
Indices: 34560399--34560592 Score: 180
Period size: 81 Copynumber: 2.4 Consensus size: 81
34560389 TTTACCCTTT
* *** * * * *
34560399 ATTTAGAAAATTACCATTTTACCCTCAA-TTGTGAAATTACTGAAATACCCCTATAGGATAGAAT
1 ATTTACAAAATTACCAAAATACCCTTAATTTGTGAAATTACAGAAATACCCCAATAGGATAAAAT
34560463 TACCAAAACACCCCTA
66 TACCAAAACACCCCTA
* ** * ** **
34560479 GTTTGTAAAATTACTAAAATACCAC-TGGTTTGTGAAATTACAGAAATACCCTCAATTTG-TAAA
1 ATTTACAAAATTACCAAAATACC-CTTAATTTGTGAAATTACAGAAATACCC-CAATAGGATAAA
*
34560542 ATTACCAAAATACCCCTA
64 ATTACCAAAACACCCCTA
34560560 ATTTACAAAATT-CCAGAAATACCCTTAATTTGT
1 ATTTACAAAATTACCA-AAATACCCTTAATTTGT
34560593 AGATTTACCA
Statistics
Matches: 87, Mismatches: 22, Indels: 9
0.74 0.19 0.08
Matches are distributed among these distances:
80 19 0.22
81 64 0.74
82 4 0.05
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
ATTTACAAAATTACCAAAATACCCTTAATTTGTGAAATTACAGAAATACCCCAATAGGATAAAAT
TACCAAAACACCCCTA
Found at i:34562707 original size:85 final size:85
Alignment explanation
Indices: 34562564--34562742 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
34562554 GGCCGGCCAT
34562564 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAC
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAC
34562629 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
34562649 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAC
34562714 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
34562734 GGGCATGGG
1 GAGCATGGG
34562743 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.09, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAC
GTAAGGATTAATAAAATAAA
Found at i:34564487 original size:12 final size:12
Alignment explanation
Indices: 34564470--34564496 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
34564460 ATTCCGAAGT
34564470 ATATATATATAC
1 ATATATATATAC
34564482 ATATATATATAC
1 ATATATATATAC
34564494 ATA
1 ATA
34564497 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:34565027 original size:27 final size:28
Alignment explanation
Indices: 34564943--34565040 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
34564933 CATGAGATTG
* * * *
34564943 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
34564972 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
34565000 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
34565027 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
34565041 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:34565051 original size:27 final size:27
Alignment explanation
Indices: 34564971--34565053 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
34564961 TAAATTGTAC
* *
34564971 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
34564999 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
34565026 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
34565053 A
1 A
34565054 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:34573301 original size:27 final size:28
Alignment explanation
Indices: 34573217--34573315 Score: 137
Period size: 27 Copynumber: 3.5 Consensus size: 28
34573207 CATGAGATTG
* * * *
34573217 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
34573246 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
34573274 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
34573301 GCACTGAGTGTGCGA
1 GCACTAAGTGTGCGA
34573316 CTTAATATAT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 25 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:34577335 original size:16 final size:18
Alignment explanation
Indices: 34577304--34577336 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
34577294 GGTTACAGTT
34577304 TTTTGACCGATTTGATGC
1 TTTTGACCGATTTGATGC
34577322 TTTT-ACCG-TTTGATG
1 TTTTGACCGATTTGATG
34577337 TAATTTTGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.48
Consensus pattern (18 bp):
TTTTGACCGATTTGATGC
Found at i:34597388 original size:51 final size:51
Alignment explanation
Indices: 34597313--34597424 Score: 118
Period size: 51 Copynumber: 2.2 Consensus size: 51
34597303 CCCTTGTAGT
* * *
34597313 CAAAGCTACCTTCTGCACAAAGTGGCATTCACACAGTACCACAC-TCGTGAC
1 CAAAGCTATCTTCTACACAAAGTGGCATGCACACAGTACCACACAT-GTGAC
* * * ** *
34597364 CAAAGCTATCTTTTACACATAGTGGCCTGCACTTAGTACCACACATGTGAT
1 CAAAGCTATCTTCTACACAAAGTGGCATGCACACAGTACCACACATGTGAC
*
34597415 CAAAGATATC
1 CAAAGCTATC
34597425 GGGTACTCAT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
51 49 0.98
52 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (51 bp):
CAAAGCTATCTTCTACACAAAGTGGCATGCACACAGTACCACACATGTGAC
Found at i:34597518 original size:50 final size:51
Alignment explanation
Indices: 34597377--34597519 Score: 180
Period size: 50 Copynumber: 2.8 Consensus size: 51
34597367 AGCTATCTTT
* * * * *
34597377 TACACATAGTGGCCTGCACTTAGTACCACACATGTGATCAAAGATATCGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGACATCGGG
* ** * *
34597428 TACTCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAA-CCATCTGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGACATCGGG
*
34597478 TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
34597520 AACCATTTTA
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 43 0.55
51 35 0.45
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (51 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGACATCGGG
Found at i:34598493 original size:10 final size:10
Alignment explanation
Indices: 34598478--34598503 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
34598468 ATCTCATTCA
34598478 CCATTTAATT
1 CCATTTAATT
34598488 CCATTTAATT
1 CCATTTAATT
34598498 CCATTT
1 CCATTT
34598504 CTACAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (10 bp):
CCATTTAATT
Found at i:34599190 original size:55 final size:53
Alignment explanation
Indices: 34599049--34599241 Score: 165
Period size: 55 Copynumber: 3.6 Consensus size: 53
34599039 TTACCATTGA
* *
34599049 CATGTCTTGACATGGTCTTACGTGGTATCCTTG-CTTATGAACATACCATTAC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACATACCAATAC
* * * * *** * *
34599101 CATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTATCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACATACCAATAC
* * * * * *
34599156 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACATACCAATAC
* *
34599210 CATGCCTTCG-CATGGTCTTACTTGGTATCCTT
1 CATGTCTT-GACATGGTCTTACATGGTATCCTT
34599242 AAACCCTAAT
Statistics
Matches: 110, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
52 28 0.25
53 5 0.05
54 37 0.34
55 40 0.36
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACATACCAATAC
Found at i:34619043 original size:27 final size:27
Alignment explanation
Indices: 34619009--34619127 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
34618999 TGGATAAGTT
34619009 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
** * *
34619036 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
34619063 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * *
34619090 GTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
34619117 GTAAAATTACC
1 GTAGAATTACC
34619128 ATTTTGCCCT
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:34619091 original size:54 final size:54
Alignment explanation
Indices: 34619009--34619127 Score: 175
Period size: 54 Copynumber: 2.2 Consensus size: 54
34618999 TGGATAAGTT
* ***
34619009 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTATAGG
* *
34619063 GTAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTATAGG
*
34619117 GTAAAATTACC
1 GTAGAATTACC
34619128 ATTTTGCCCT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTATAGG
Found at i:34631005 original size:47 final size:47
Alignment explanation
Indices: 34630939--34631379 Score: 801
Period size: 47 Copynumber: 9.4 Consensus size: 47
34630929 GAAATGATAG
* *
34630939 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
34630986 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
34631033 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGCGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
34631080 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
34631127 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
34631174 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTATGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
34631221 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAGATCTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
34631268 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
34631315 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
34631362 TAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGAT
34631380 AATATGTGAT
Statistics
Matches: 384, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 384 1.00
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:34631392 original size:27 final size:27
Alignment explanation
Indices: 34631354--34631406 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
34631344 GAAAGTGTAT
34631354 ATATGTGATAAGGCCTAATAGCCGATA
1 ATATGTGATAAGGCCTAATAGCCGATA
34631381 ATATGTGATAAGGCCTAATAGCCGAT
1 ATATGTGATAAGGCCTAATAGCCGAT
34631407 GTGATGAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (27 bp):
ATATGTGATAAGGCCTAATAGCCGATA
Found at i:34631393 original size:74 final size:74
Alignment explanation
Indices: 34631307--34631452 Score: 283
Period size: 74 Copynumber: 2.0 Consensus size: 74
34631297 GAAAGTGTAT
34631307 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
34631372 TAGCCGATA
66 TAGCCGATA
34631381 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
34631446 TGGCCGA
66 TAGCCGA
34631453 CGTGTGAATG
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (74 bp):
ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TAGCCGATA
Found at i:34631408 original size:121 final size:120
Alignment explanation
Indices: 34631263--34631481 Score: 411
Period size: 121 Copynumber: 1.8 Consensus size: 120
34631253 AGTGTAGATC
34631263 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
*
34631328 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATAATA
66 CCGACGTG-TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATAATA
*
34631384 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
34631449 CCGACGTGTGAATGTGAAAGTGTATATATGTGA
66 CCGACGTGTGAATGTGAAAGTGTATATATGTGA
34631482 CAGGGCCGAG
Statistics
Matches: 96, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
120 25 0.26
121 71 0.74
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (120 bp):
TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
CCGACGTGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATAATA
Found at i:34631478 original size:46 final size:47
Alignment explanation
Indices: 34631381--34631532 Score: 207
Period size: 47 Copynumber: 3.3 Consensus size: 47
34631371 ATAGCCGATA
* *
34631381 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
34631428 ATATGTGATAAGGCCTAATGGCCGACGTG-TGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
* * * * * * *
34631474 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
*
34631521 AAATGTGATAAG
1 ATATGTGATAAG
34631533 TCCCGAAGGG
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 41 0.45
47 51 0.55
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.26
Consensus pattern (47 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
Found at i:34631707 original size:37 final size:37
Alignment explanation
Indices: 34631651--34631726 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
34631641 CCGAGCTCTA
* *
34631651 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
34631688 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
34631725 AA
1 AA
34631727 TACTTCGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
37 34 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:34644910 original size:48 final size:48
Alignment explanation
Indices: 34644855--34645034 Score: 213
Period size: 48 Copynumber: 3.8 Consensus size: 48
34644845 ACTGTGCTAA
* *
34644855 ATGTGCCTATGTAAGACCATGTTTGGGACATGGCATCGGCAATGATAT
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGGCATCAGCAATGATAT
* * *
34644903 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCAGCGATGATAT
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGGCATCAGCAATGATAT
**
34644951 GCGTGCC-AGTGTAAGACCATGTCTGGGACAT-GCAATCAGCAATGATAT
1 ATGTGCCTA-TGTAAGACCATGTCTGGGACATGGC-ATCAGCAATGATAT
* ** *
34644999 GTG-GATTCATGTAAGACCATGTCGGGGACATGGCAT
1 ATGTGCCT-ATGTAAGACCATGTCTGGGACATGGCAT
34645035 TGGTACTTTA
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
47 3 0.03
48 109 0.95
49 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
ATGTGCCTATGTAAGACCATGTCTGGGACATGGCATCAGCAATGATAT
Found at i:34649670 original size:48 final size:49
Alignment explanation
Indices: 34649610--34649746 Score: 170
Period size: 48 Copynumber: 2.8 Consensus size: 49
34649600 TAAATGTGCC
* *
34649610 TGTGTAAAACCATATCTAGGACATGGCATCAGCGATGATATATGAG-CA
1 TGTGTAAGACCATATCTAGGACATGGCATCAGTGATGATATATGAGCCA
* * * * * *
34649658 TGTGTAAGACCATGTCTGGGACATGGAATCGGTGATGATATCTGTGCCA
1 TGTGTAAGACCATATCTAGGACATGGCATCAGTGATGATATATGAGCCA
* *
34649707 -GTGTAAGACCATATCTAAGACATGGCATCAGTGTTGATAT
1 TGTGTAAGACCATATCTAGGACATGGCATCAGTGATGATAT
34649747 GTGGATTCAT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
48 72 0.97
49 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAAGACCATATCTAGGACATGGCATCAGTGATGATATATGAGCCA
Found at i:34649760 original size:48 final size:48
Alignment explanation
Indices: 34649612--34649782 Score: 143
Period size: 48 Copynumber: 3.6 Consensus size: 48
34649602 AATGTGCCTG
* * *
34649612 TGTAAAACCATATCTAGGACATGGCATCAGCGATGATATATGAGCA-T-G
1 TGTAAGACCATATCTAGGACATGGCATCAGTGATGATATATG-G-ATTCA
* * * * * *
34649660 TGTAAGACCATGTCTGGGACATGGAATCGGTGATGATATCT-G-TGCCA
1 TGTAAGACCATATCTAGGACATGGCATCAGTGATGATATATGGAT-TCA
* * *
34649707 GTGTAAGACCATATCTAAGACATGGCATCAGTGTTGATATGTGGATTCA
1 -TGTAAGACCATATCTAGGACATGGCATCAGTGATGATATATGGATTCA
* **
34649756 TGTAAGACCATGTCGGGGACATGGCAT
1 TGTAAGACCATATCTAGGACATGGCAT
34649783 TGGTACTTTA
Statistics
Matches: 96, Mismatches: 21, Indels: 12
0.74 0.16 0.09
Matches are distributed among these distances:
46 1 0.01
48 91 0.95
49 3 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATATCTAGGACATGGCATCAGTGATGATATATGGATTCA
Found at i:34649768 original size:96 final size:96
Alignment explanation
Indices: 34649604--34649779 Score: 248
Period size: 96 Copynumber: 1.8 Consensus size: 96
34649594 CTGTGCTAAA
* * *
34649604 TGTGCCTGTGTAAAACCATATCTAGGACATGGCATCAGCGATGATATATGAGCATGTGTAAGACC
1 TGTGCCAGTGTAAAACCATATCTAAGACATGGCATCAGCGATGATATATGAGCATATGTAAGACC
*
34649669 ATGTCTGGGACATGGAATCGGTGATGATATC
66 ATGTCGGGGACATGGAATCGGTGATGATATC
* * * *
34649700 TGTGCCAGTGTAAGACCATATCTAAGACATGGCATCAGTGTTGATATGTG-G-ATTCATGTAAGA
1 TGTGCCAGTGTAAAACCATATCTAAGACATGGCATCAGCGATGATATATGAGCA-T-ATGTAAGA
34649763 CCATGTCGGGGACATGG
64 CCATGTCGGGGACATGG
34649780 CATTGGTACT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
94 1 0.01
95 2 0.03
96 67 0.96
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (96 bp):
TGTGCCAGTGTAAAACCATATCTAAGACATGGCATCAGCGATGATATATGAGCATATGTAAGACC
ATGTCGGGGACATGGAATCGGTGATGATATC
Found at i:34650239 original size:21 final size:21
Alignment explanation
Indices: 34650200--34650240 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
34650190 AATATAAAGA
* *
34650200 AAAACTTATAATTATTTTTTT
1 AAAACTTATAATGAATTTTTT
*
34650221 AAAATTTATAATGAATTTTT
1 AAAACTTATAATGAATTTTT
34650241 AAAGTCAGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
AAAACTTATAATGAATTTTTT
Found at i:34651219 original size:93 final size:93
Alignment explanation
Indices: 34651112--34651282 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
34651102 GCCCCTAAGT
* * *
34651112 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
34651177 CAAGCTCGGATGCCTAGTTACATCTCAC
66 CAAGCTCGGATGCCTAGTTACATCTCAC
* *
34651205 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
34651270 CGAGTTCGGATGC
66 CAAGCTCGGATGC
34651283 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCAC
Found at i:34651279 original size:46 final size:46
Alignment explanation
Indices: 34651107--34651279 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
34651097 AACCCGCCCC
* * *
34651107 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * *
34651153 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* * *
34651201 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* *
34651246 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
34651280 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.57
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:34658762 original size:46 final size:46
Alignment explanation
Indices: 34658695--34658866 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
34658685 AACCCGCCCC
*
34658695 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCA
* *
34658741 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCATCCA
* * * * *
34658789 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCA
*
34658834 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
34658867 ACGCTCAACC
Statistics
Matches: 107, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 61 0.57
47 27 0.25
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCA
Found at i:34665708 original size:50 final size:49
Alignment explanation
Indices: 34665442--34665794 Score: 226
Period size: 46 Copynumber: 7.5 Consensus size: 49
34665432 TTTGTGTGCT
* * * * *
34665442 AGTGTAAGA-CATGCCTGGGACAT-GCATCGGCC-ACATTGTGGGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTGCGAGAGTC
* * * ** *
34665488 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGA-AACGAAAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTGCGAGAGTC
* * *
34665535 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGGGA-TG-TA-AGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT--AGATTGCGAGAGTC
* * *
34665582 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACA---AGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTGCGA-GAGTC
*
34665626 AGTGTAAGACCATGTCTGGGACATGTCATCGG-CTCAGATATGCGAGAGGT-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-AGAT-TGCGAGA-GTC
* * * * *
34665676 AGTGTAAGACCATTTCTGGGACATGGCGTCGGCCTTGATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTGCGAGAGTC
* * * * *
34665725 AGTGTAAGGCCATGTCTGGGACATGGAATC-GACTTGA-TG-GATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTGCGA-GAGTC
*
34665772 AATGTAAGACCATGTCTGGGACA
1 AGTGTAAGACCATGTCTGGGACA
34665795 CGTTTGAGGC
Statistics
Matches: 245, Mismatches: 41, Indels: 41
0.75 0.13 0.13
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.04
45 16 0.07
46 60 0.24
47 55 0.22
48 30 0.12
49 32 0.13
50 33 0.13
51 6 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTGCGAGAGTC
Found at i:34665786 original size:47 final size:48
Alignment explanation
Indices: 34665628--34665794 Score: 133
Period size: 49 Copynumber: 3.4 Consensus size: 48
34665618 GATGTGTCAG
** * * ** *
34665628 TGTAAGACCATGTCTGGGACATGTCATCGG-CTCAGATATGCGAGAGGTAG
1 TGTAAGACCATGTCTGGGACATGGAATCGGACT-TGAT-T-CGATAGCCAA
* ** * * *
34665678 TGTAAGACCATTTCTGGGACATGGCGTCGGCCTTGATTTCGATAGTCAG
1 TGTAAGACCATGTCTGGGACATGGAATCGGACTTGA-TTCGATAGCCAA
* *
34665727 TGTAAGGCCATGTCTGGGACATGGAATC-GACTTGA-TGGATGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGAATCGGACTTGATTCGAT-AGCCAA
34665774 TGTAAGACCATGTCTGGGACA
1 TGTAAGACCATGTCTGGGACA
34665795 CGTTTGAGGC
Statistics
Matches: 98, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
46 4 0.04
47 24 0.24
48 6 0.06
49 31 0.32
50 30 0.31
51 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGAATCGGACTTGATTCGATAGCCAA
Found at i:34668902 original size:19 final size:20
Alignment explanation
Indices: 34668860--34668928 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
34668850 GTTACAAAAT
34668860 AATTCAAAATAATTTTCAAA
1 AATTCAAAATAATTTTCAAA
*
34668880 AATTCAAAATAATTTT-TAA
1 AATTCAAAATAATTTTCAAA
*
34668899 AATTCAAAAT-ATTTACAAA
1 AATTCAAAATAATTTTCAAA
34668918 AATTCTAAAAT
1 AATTC-AAAAT
34668929 TTATATTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
18 4 0.09
19 19 0.43
20 21 0.48
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (20 bp):
AATTCAAAATAATTTTCAAA
Found at i:34675288 original size:8 final size:8
Alignment explanation
Indices: 34675277--34675313 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
34675267 AAATATTTAA
34675277 AAAATTCT
1 AAAATTCT
*
34675285 AAAATACT
1 AAAATTCT
*
34675293 AAAATTTT
1 AAAATTCT
34675301 AAAATTCT
1 AAAATTCT
34675309 AAAAT
1 AAAAT
34675314 ATATAAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (8 bp):
AAAATTCT
Found at i:34675288 original size:26 final size:25
Alignment explanation
Indices: 34675259--34675323 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
34675249 TAACATATAA
34675259 AAAATA-AAAAATATTTAAAAAATTCT
1 AAAATACAAAAATATTT--AAAATTCT
*
34675285 AAAATACTAAAAT-TTTAAAATTCT
1 AAAATACAAAAATATTTAAAATTCT
* *
34675309 AAAATATATAAATAT
1 AAAATACAAAAATAT
34675324 AAATTTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
24 18 0.55
25 1 0.03
26 9 0.27
27 5 0.15
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.34
Consensus pattern (25 bp):
AAAATACAAAAATATTTAAAATTCT
Found at i:34675330 original size:30 final size:33
Alignment explanation
Indices: 34675294--34675353 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
34675284 TAAAATACTA
*
34675294 AAATTTT-AAAATTC-TAA-AATATATAAATAT
1 AAATTTTAAAAAATCATAATAATATATAAATAT
34675324 AAATTTTAAAAAATCATAATAATATATAAA
1 AAATTTTAAAAAATCATAATAATATATAAA
34675354 AATTGTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 7 0.27
31 6 0.23
32 3 0.12
33 10 0.38
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (33 bp):
AAATTTTAAAAAATCATAATAATATATAAATAT
Found at i:34681089 original size:47 final size:47
Alignment explanation
Indices: 34681011--34681272 Score: 416
Period size: 47 Copynumber: 5.6 Consensus size: 47
34681001 CCCTTCGGGA
* * * * * * *
34681011 CTTATCACATTTATACACTTTCACATCCATCACGTTGACCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34681058 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34681105 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34681152 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34681199 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34681246 CTTATCGCATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
34681273 ACCAACCCTT
Statistics
Matches: 199, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 199 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34681602 original size:40 final size:40
Alignment explanation
Indices: 34681497--34681639 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 40
34681487 GCTACTCGTT
*
34681497 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTATAGTAACTCGCA
* *
34681537 CAAATGCCATTGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCC-TTCGGACTTAGCCCGGATTATAGTAACTCGCA
* * * *
34681577 CAAATGCCTTCGGATCTTAGTCCGGA-TATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTATAGTAAC-TCGCA
34681618 CAAA-GCCTTCAGGACTTAGCCC
1 CAAATGCCTTC-GGACTTAGCCC
34681640 AGACATCATT
Statistics
Matches: 87, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
39 6 0.07
40 66 0.76
41 15 0.17
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGACTTAGCCCGGATTATAGTAACTCGCA
Found at i:34687648 original size:16 final size:16
Alignment explanation
Indices: 34687627--34687658 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
34687617 GTTGTAACGC
34687627 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
34687643 CCCAAAAGTCCCGAAA
1 CCCAAAAATCCCGAAA
34687659 TATTGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.38, G:0.09, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:34689878 original size:39 final size:40
Alignment explanation
Indices: 34689778--34689962 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
34689768 TCGAATGATG
* * *
34689778 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
34689817 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
34689858 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
34689897 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
34689936 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
34689963 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:34689984 original size:79 final size:79
Alignment explanation
Indices: 34689831--34689995 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
34689821 GGACTAAGAT
* **
34689831 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
34689896 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
34689910 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
34689973 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34689989 CCGAAGG
1 CCGAAGG
34689996 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34692559 original size:29 final size:28
Alignment explanation
Indices: 34692504--34692617 Score: 106
Period size: 28 Copynumber: 4.0 Consensus size: 28
34692494 GTGAGCATGA
* * *
34692504 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
34692532 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
34692561 ATATACAA-GTGGTTTAGGCC-AATGGGCC
1 ATATA-AATGT-GATTGGGCCTAATGGGCC
* * **
34692589 ATATGAATATGATTGGGTTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
34692617 A
1 A
34692618 AATACAGGTA
Statistics
Matches: 70, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
27 7 0.10
28 33 0.47
29 27 0.39
30 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:34703929 original size:29 final size:30
Alignment explanation
Indices: 34703872--34703929 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
34703862 CTTTTGGAAA
* * *
34703872 TATTTACAAAAAGAGACATCTAATTTTTAT
1 TATTTACAAAAAGAGACAGCCAAATTTTAT
34703902 TATTTACAAAAAGAG-CAGCCAAATTTTA
1 TATTTACAAAAAGAGACAGCCAAATTTTA
34703930 AAAATACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGACAGCCAAATTTTAT
Found at i:34712983 original size:47 final size:47
Alignment explanation
Indices: 34712883--34713355 Score: 757
Period size: 47 Copynumber: 9.9 Consensus size: 47
34712873 TAGTATGGCA
*
34712883 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
34712932 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
34712979 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
34713026 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
34713073 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
34713122 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
34713169 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* *
34713218 TAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
34713265 TAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
34713312 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
34713356 TCCCGAAGGG
Statistics
Matches: 397, Mismatches: 23, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
47 279 0.70
49 118 0.30
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:34713061 original size:96 final size:95
Alignment explanation
Indices: 34712883--34713355 Score: 781
Period size: 96 Copynumber: 5.0 Consensus size: 95
34712873 TAGTATGGCA
34712883 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAGGGCCTAATGGCCGATGTGAT
34712948 GAATGTGAAAGTGTATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
34712979 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAGGGCCTAATGGCCGATGTGATG
34713043 AATGTGAAAGTGTATATATGTGATAAGGCC
66 AATGTGAAAGTGTATATATGTGATAAGGCC
*
34713073 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAGGGCCTAATGGCCGATGTGAT
34713138 GAATGTGAAAGTGTATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
* *
34713169 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-GAGGCCTAATAGCCAATGTGA
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAG-GGCCTAATGGCCGATGTGA
34713233 TGAATGTGAAAGTGTATATATGTGATAAGGCC
64 TGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
34713265 TAATGGCCGATGTGATGAATGTGAAAGTG-TATGTATGTGACAGGGCCGAGTGGCCAACGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAGGGCCTAATGGCCGATGTGATG
* *
34713329 GATGTGAAAGTGTATAAATGTGATAAG
66 AATGTGAAAGTGTATATATGTGATAAG
34713356 TCCCGAAGGG
Statistics
Matches: 359, Mismatches: 14, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
94 144 0.40
95 2 0.01
96 213 0.59
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (95 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAGGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:34713141 original size:143 final size:142
Alignment explanation
Indices: 34712883--34713355 Score: 770
Period size: 143 Copynumber: 3.3 Consensus size: 142
34712873 TAGTATGGCA
* *
34712883 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCGATGTGAT
34712948 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
65 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
34713013 ATGTGATAAGGCC
130 ATGTGATAAGGCC
34713026 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATG
*
34713090 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
66 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
34713155 TATGTGATAAGGCC
129 TATGTGATAAGGCC
* *
34713169 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGCCTAATAGCCAATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCGATGTGAT
*
34713234 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGT
65 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
34713299 ATGTGACAGGGCC
130 ATGTGATAAGGCC
* * * * * *
34713312 GAGTGGCCAACGTGATGGATGTGAAAGTG-TATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
34713356 TCCCGAAGGG
Statistics
Matches: 310, Mismatches: 16, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
141 58 0.19
143 207 0.67
145 45 0.15
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (142 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCC
Found at i:34713530 original size:37 final size:37
Alignment explanation
Indices: 34713474--34713552 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
34713464 CCGAGCTCTA
* *
34713474 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
34713511 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
34713548 AAGAC
1 AAGAC
34713553 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:34720872 original size:47 final size:47
Alignment explanation
Indices: 34720794--34721343 Score: 920
Period size: 47 Copynumber: 11.6 Consensus size: 47
34720784 CCCTTCGGGA
* * * * * *
34720794 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
34720841 CCTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34720888 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34720935 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34720982 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34721031 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34721078 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34721127 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34721174 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34721223 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34721270 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34721317 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
34721344 ACCAACCCTT
Statistics
Matches: 476, Mismatches: 21, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
47 338 0.71
49 138 0.29
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34721023 original size:96 final size:96
Alignment explanation
Indices: 34720794--34721343 Score: 941
Period size: 96 Copynumber: 5.8 Consensus size: 96
34720784 CCCTTCGGGA
* * * * * * *
34720794 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
34720857 ACTTTCACATTCATCACATCAGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
34720888 CTTATCGC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
34720951 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
34720982 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
34721047 GCTTTCACATTCATCACATCGGCCATTAGAC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
34721078 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
34721143 ACTTTCACATTCATCACATCGGCCATTAGAC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
34721174 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
34721239 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
34721270 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
34721333 ACTTTCACATT
66 ACTTTCACATT
34721344 ACCAACCCTT
Statistics
Matches: 437, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
93 1 0.00
94 154 0.35
96 282 0.65
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34721052 original size:143 final size:141
Alignment explanation
Indices: 34720794--34721343 Score: 920
Period size: 143 Copynumber: 3.9 Consensus size: 141
34720784 CCCTTCGGGA
* * * * * * * *
34720794 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
34720859 TTTCACATTCATCACATCAGCCATTAGGCCTTATCGCATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATACACTTTCACATTCATCACATC
34720924 GGCCATTAGGC
131 GGCCATTAGGC
34720935 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
34721000 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACGCTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATACACTTTCACATTCATCACA
*
34721065 TCGGCCATTAGAC
129 TCGGCCATTAGGC
34721078 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
34721143 ACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGACCTTATCAC--ATATATACACTTTCACATTCATCA
34721208 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
34721223 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
34721288 TTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATACACTTTCACATT
66 TTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATACACTTTCACATT
34721344 ACCAACCCTT
Statistics
Matches: 388, Mismatches: 15, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
141 66 0.17
143 230 0.59
145 92 0.24
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:34721674 original size:40 final size:40
Alignment explanation
Indices: 34721568--34721707 Score: 153
Period size: 40 Copynumber: 3.5 Consensus size: 40
34721558 GCTACTCGTT
* *
34721568 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGACCGGATT-TAGTAACTCGCA
34721608 CAAATGCCTTCGGGACTTA-ACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGAC-CGGATTTAGTAACTCGCA
* * * * *
34721648 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGACCGGATTTAGTAAC-TCGCA
34721689 CAAA-GCCTTCGGGACTTAG
1 CAAATGCCTTCGGGACTTAG
34721708 CCCAGACATC
Statistics
Matches: 87, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
39 4 0.05
40 69 0.79
41 14 0.16
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCA
Found at i:34726171 original size:42 final size:42
Alignment explanation
Indices: 34726124--34726206 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
34726114 AAAGTGATAG
34726124 CTTATGCCTCAAGAAAGTTGAAGCCACATGGAAAGAATTACT
1 CTTATGCCTCAAGAAAGTTGAAGCCACATGGAAAGAATTACT
* * *
34726166 CTTATGCCTTAAGACAGTTGAAGCCGCATGGAAAGAATTAC
1 CTTATGCCTCAAGAAAGTTGAAGCCACATGGAAAGAATTAC
34726207 CCGACACACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (42 bp):
CTTATGCCTCAAGAAAGTTGAAGCCACATGGAAAGAATTACT
Found at i:34734360 original size:19 final size:21
Alignment explanation
Indices: 34734321--34734360 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
34734311 GACTTGATGA
*
34734321 ATGAATTTGAATGACTTGTAT
1 ATGAATTTGAATGAATTGTAT
34734342 ATGAATTTG-AT-AATTGTAT
1 ATGAATTTGAATGAATTGTAT
34734361 GAGAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 2 0.11
21 9 0.50
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.45
Consensus pattern (21 bp):
ATGAATTTGAATGAATTGTAT
Found at i:34748991 original size:40 final size:40
Alignment explanation
Indices: 34748946--34749217 Score: 296
Period size: 40 Copynumber: 6.8 Consensus size: 40
34748936 TATAACCACA
****
34748946 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * *
34748986 CGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
34749026 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
34749066 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * **
34749106 AGCAC-AATCGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAAT-GCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
34749146 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
*
34749186 AGCAC-AATCGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAAT-GCCTTCGGGTCTTAGCCCGGATA
34749218 TCATTCAAAT
Statistics
Matches: 187, Mismatches: 42, Indels: 6
0.80 0.18 0.03
Matches are distributed among these distances:
39 6 0.03
40 178 0.95
41 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
Found at i:34749066 original size:80 final size:80
Alignment explanation
Indices: 34748918--34749214 Score: 429
Period size: 80 Copynumber: 3.7 Consensus size: 80
34748908 ACCCAAGTTT
* * * * * * *
34748918 CTTCGGAAT-TTAG-CCGGATATAACCACAAGCACAAAT-GCCTTCGGGTCTTAGCCCGGATTTG
1 CTTCGG-ATCTTAGCCCGGATAAAATCACTAGCAC-AATCGCCTTCGGGTCTTAACCCGGGTATA
*
34748980 GTAACTCGCACAAATGC
64 GCAACTCGCACAAATGC
* *
34748997 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGTCTTAACCCGGGTATAGC
34749062 AACTCGCACAAATGC
66 AACTCGCACAAATGC
*
34749077 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGTCTTAACCCGGGTATAGC
34749142 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* * *
34749157 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGACTTAGCCCGG
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGTCTTAACCCGG
34749215 ATATCATTCA
Statistics
Matches: 202, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
78 2 0.01
79 13 0.06
80 187 0.93
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGTCTTAACCCGGGTATAGC
AACTCGCACAAATGC
Found at i:34757167 original size:40 final size:40
Alignment explanation
Indices: 34757122--34757393 Score: 287
Period size: 40 Copynumber: 6.8 Consensus size: 40
34757112 TATAACCACA
****
34757122 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * *
34757162 CGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
34757202 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * *
34757242 CGCACAAATGCCTTCGGGTCTTAGCCCGAATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * **
34757282 AGCAC-AATCGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAAT-GCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
34757322 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
*
34757362 AGCAC-AATCGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAAT-GCCTTCGGGTCTTAGCCCGGATA
34757394 TCATCCAAAT
Statistics
Matches: 185, Mismatches: 44, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
39 6 0.03
40 176 0.95
41 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
Found at i:34757242 original size:80 final size:80
Alignment explanation
Indices: 34757095--34757390 Score: 418
Period size: 80 Copynumber: 3.7 Consensus size: 80
34757085 CCCAAGTTTT
* * * * * * *
34757095 TTCGGAAT-TTAG-CCGGATATAACCACAAGCACAAAT-GCCTTCGGGTCTTAGCCCGGATTTGG
1 TTCGG-ATCTTAGCCCGGATAAAATCACTAGCAC-AATCGCCTTCGGGTCTTAACCCGGGTATAG
*
34757157 TAACTCGCACAAATGCC
64 CAACTCGCACAAATGCC
* *
34757174 TTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCA
1 TTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGTCTTAACCCGGGTATAGCA
34757239 ACTCGCACAAATGCC
66 ACTCGCACAAATGCC
* *
34757254 TTCGGGTCTTAGCCCGAATAAAATCACTAGCACAATCGCCTTCGGGTCTTAACCCGGGTATAGCA
1 TTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGTCTTAACCCGGGTATAGCA
34757319 ACTCGCACAAATGCC
66 ACTCGCACAAATGCC
* * *
34757334 TTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGACTTAGCCCGG
1 TTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGTCTTAACCCGG
34757391 ATATCATCCA
Statistics
Matches: 199, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
78 2 0.01
79 12 0.06
80 185 0.93
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGTCTTAACCCGGGTATAGCA
ACTCGCACAAATGCC
Found at i:34764716 original size:84 final size:80
Alignment explanation
Indices: 34764617--34764778 Score: 202
Period size: 84 Copynumber: 2.0 Consensus size: 80
34764607 AGTACCAATA
34764617 ATATAGCTGAAGCTA-TAAAATATCGCACACTTAGTGCCATCATATTA-AACCAAAACTATCTCA
1 ATATAGCTGAAGCTATTAAAAT-TCGCACACTTAGTG-C-T-AT-TTATAACCAAAACTATCTCA
34764680 ATATCGCACACATAGTGCTAC
61 A-ATCGCACACATAGTGCTAC
** * * *
34764701 ATATAGCTGAAGCTATTCCAATTCGCACACTTAGTGCTATTTATAGCCAAAGCTATTTCAAATCG
1 ATATAGCTGAAGCTATTAAAATTCGCACACTTAGTGCTATTTATAACCAAAACTATCTCAAATCG
*
34764766 CACACTTAGTGCT
66 CACACATAGTGCT
34764779 GAACATAGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
80 19 0.27
81 16 0.23
82 1 0.01
83 1 0.01
84 29 0.41
85 4 0.06
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (80 bp):
ATATAGCTGAAGCTATTAAAATTCGCACACTTAGTGCTATTTATAACCAAAACTATCTCAAATCG
CACACATAGTGCTAC
Found at i:34764736 original size:40 final size:40
Alignment explanation
Indices: 34764617--34764778 Score: 139
Period size: 40 Copynumber: 4.0 Consensus size: 40
34764607 AGTACCAATA
** ** *
34764617 ATATAGCTGAAGCTATAAAATATCGCACACTTAGTGCCATC
1 ATATAGCCAAAGCTATCCAATATCGCACACTTAGTGCTA-C
* * *
34764658 ATATTAAACCAAAACTATCTCAATATCGCACACATAGTGCTAC
1 ATA-T-AGCCAAAGCTATC-CAATATCGCACACTTAGTGCTAC
** *
34764701 ATATAGCTGAAGCTATTCCAAT-TCGCACACTTAGTGCTAT
1 ATATAGCCAAAGCTA-TCCAATATCGCACACTTAGTGCTAC
* *
34764741 TTATAGCCAAAGCTATTTCAA-ATCGCACACTTAGTGCT
1 ATATAGCCAAAGCTA-TCCAATATCGCACACTTAGTGCT
34764779 GAACATAGTC
Statistics
Matches: 98, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
40 49 0.50
41 14 0.14
42 4 0.04
43 12 0.12
44 19 0.19
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (40 bp):
ATATAGCCAAAGCTATCCAATATCGCACACTTAGTGCTAC
Found at i:34766699 original size:33 final size:33
Alignment explanation
Indices: 34766657--34766721 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
34766647 AAGGAGAAAA
*
34766657 CTTCATTTCATTTTCTTTGTTTTTCCTTTATTT
1 CTTCATTTCATTTTCATTGTTTTTCCTTTATTT
34766690 CTTCATTTCATTTTCATTGTTTTTCCTTTATT
1 CTTCATTTCATTTTCATTGTTTTTCCTTTATT
34766722 CTTTTCAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.11, C:0.18, G:0.03, T:0.68
Consensus pattern (33 bp):
CTTCATTTCATTTTCATTGTTTTTCCTTTATTT
Found at i:34778444 original size:95 final size:95
Alignment explanation
Indices: 34778281--34778461 Score: 272
Period size: 95 Copynumber: 1.9 Consensus size: 95
34778271 AGTTCTTTGC
* * * * *
34778281 AAAGAATATGTGAACTGTCAATGGATTGTATGTGTGAATTGTCTCTATGTAGTATGTACGAACTG
1 AAAGAATATGTGAACTGTCAATGGATTGTATGTGTGAACTGTCTCTACGAACTATGTACAAACTG
34778346 TCATTGTATTGTATGCATGAGTGCCTTTAT
66 TCATTGTATTGTATGCATGAGTGCCTTTAT
* * * * *
34778376 AAAGAATATGTGAACTGTTAATGTATTGTATGTGTGAACTGTCTCTGCGAACTATGTGCAAATTG
1 AAAGAATATGTGAACTGTCAATGGATTGTATGTGTGAACTGTCTCTACGAACTATGTACAAACTG
34778441 TCATTGTATTGTATGCATGAG
66 TCATTGTATTGTATGCATGAG
34778462 CTATCTTGCA
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
95 76 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.38
Consensus pattern (95 bp):
AAAGAATATGTGAACTGTCAATGGATTGTATGTGTGAACTGTCTCTACGAACTATGTACAAACTG
TCATTGTATTGTATGCATGAGTGCCTTTAT
Found at i:34778475 original size:95 final size:95
Alignment explanation
Indices: 34778275--34778480 Score: 270
Period size: 95 Copynumber: 2.2 Consensus size: 95
34778265 TATGTGAGTT
* * * *
34778275 CTTTGCAAAGAATATGTGAACTGTCAATGGATTGTATGTGTGAATTGTCTCTATGTAGTATGTAC
1 CTTTGCAAAGAATATGTGAACTGTCAATGGATTGTATGTGTGAACTGTCTCTACGAACTATGTAC
* *
34778340 GAACTGTCATTGTATTGTATGCATGAGTGC
66 AAACTGTCATTGTATTGTATGCATGAGTAC
** * * * *
34778370 CTTTATAAAGAATATGTGAACTGTTAATGTATTGTATGTGTGAACTGTCTCTGCGAACTATGTGC
1 CTTTGCAAAGAATATGTGAACTGTCAATGGATTGTATGTGTGAACTGTCTCTACGAACTATGTAC
* *
34778435 AAATTGTCATTGTATTGTATGCATGAGCTAT
66 AAACTGTCATTGTATTGTATGCATGAG-TAC
34778466 C-TTGCAAAGAATATG
1 CTTTGCAAAGAATATG
34778481 CAAATTGTAA
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
95 92 0.98
96 2 0.02
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (95 bp):
CTTTGCAAAGAATATGTGAACTGTCAATGGATTGTATGTGTGAACTGTCTCTACGAACTATGTAC
AAACTGTCATTGTATTGTATGCATGAGTAC
Found at i:34778499 original size:95 final size:95
Alignment explanation
Indices: 34778275--34778510 Score: 267
Period size: 95 Copynumber: 2.5 Consensus size: 95
34778265 TATGTGAGTT
* * * * * *
34778275 CTTTGCAAAGAATATGTGAACTGTCAATGGATTGTATGTGTGAATTGTCTCTATGTAGTATGTAC
1 CTTTGCAAAGAATATGTGAACTGTAAATGAATTGTATGTGTGAACTGTCTCTACGAACTATGTAC
* *
34778340 GAACTGTCATTGTATTGTATGCATGAGTGC
66 AAACTGTCATTGTATTGTATGCATGAGTAC
** * * * *
34778370 CTTTATAAAGAATATGTGAACTGTTAATGTATTGTATGTGTGAACTGTCTCTGCGAACTATGTGC
1 CTTTGCAAAGAATATGTGAACTGTAAATGAATTGTATGTGTGAACTGTCTCTACGAACTATGTAC
* *
34778435 AAATTGTCATTGTATTGTATGCATGAGCTAT
66 AAACTGTCATTGTATTGTATGCATGAG-TAC
** * * *
34778466 C-TTGCAAAGAATATGCAAATTGTAAATGAATTGTATATGTCAACT
1 CTTTGCAAAGAATATGTGAACTGTAAATGAATTGTATGTGTGAACT
34778511 ACCTCAGCGA
Statistics
Matches: 117, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
95 115 0.98
96 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (95 bp):
CTTTGCAAAGAATATGTGAACTGTAAATGAATTGTATGTGTGAACTGTCTCTACGAACTATGTAC
AAACTGTCATTGTATTGTATGCATGAGTAC
Found at i:34778521 original size:95 final size:95
Alignment explanation
Indices: 34778344--34778531 Score: 218
Period size: 95 Copynumber: 2.0 Consensus size: 95
34778334 ATGTACGAAC
* * ** * * *
34778344 TGTCATTGTATTGTATGCATGAGTGCCTTTATAAAGAATATGTGAACTGTTAATGTATTGTATGT
1 TGTCATTGTATTGTATGCATGAGTACCTTTACAAAGAATATGCAAACTGTAAATGAATTGTATAT
* ** *
34778409 GTGAACTGTCTCTGCGAA-CTATGTGCAAAT
66 GTCAACTACCTCAGCGAAGC-ATGTGCAAAT
* * *
34778439 TGTCATTGTATTGTATGCATGAGCTATC-TTGCAAAGAATATGCAAATTGTAAATGAATTGTATA
1 TGTCATTGTATTGTATGCATGAG-TACCTTTACAAAGAATATGCAAACTGTAAATGAATTGTATA
34778503 TGTCAACTACCTCAGCGAAGCATGTGCAA
65 TGTCAACTACCTCAGCGAAGCATGTGCAA
34778532 CTATCACTAT
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
95 74 0.96
96 3 0.04
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (95 bp):
TGTCATTGTATTGTATGCATGAGTACCTTTACAAAGAATATGCAAACTGTAAATGAATTGTATAT
GTCAACTACCTCAGCGAAGCATGTGCAAAT
Found at i:34793940 original size:40 final size:40
Alignment explanation
Indices: 34793856--34794069 Score: 249
Period size: 40 Copynumber: 5.4 Consensus size: 40
34793846 AAGCCAGGTA
* * * *
34793856 CCTTCGGGATTTA-ACCGAATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
34793894 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34793934 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34793974 CCTTCGGAACTTAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34794014 CCTTTGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
34794055 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
34794070 TCGGTTATCA
Statistics
Matches: 154, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 12 0.08
39 16 0.10
40 103 0.67
41 19 0.12
42 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34798320 original size:26 final size:26
Alignment explanation
Indices: 34798289--34798396 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
34798279 TGAAATGCCC
*
34798289 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
34798315 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
34798341 ATCATGGAATATTCACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
34798367 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
34798393 ATCA
1 ATCA
34798397 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:34807992 original size:15 final size:13
Alignment explanation
Indices: 34807974--34808000 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34807964 ATAAGTGATG
34807974 TGTGTGAAAATTT
1 TGTGTGAAAATTT
34807987 TGTGTGAAAATTT
1 TGTGTGAAAATTT
34808000 T
1 T
34808001 TAACGTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:34812324 original size:13 final size:13
Alignment explanation
Indices: 34812306--34812333 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34812296 ACATATTATA
34812306 AATATTTTGTGTT
1 AATATTTTGTGTT
34812319 AATATTTTGTGTT
1 AATATTTTGTGTT
34812332 AA
1 AA
34812334 AAAATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:34813559 original size:40 final size:40
Alignment explanation
Indices: 34813511--34813796 Score: 443
Period size: 40 Copynumber: 7.2 Consensus size: 40
34813501 GGACTAAGAT
34813511 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
34813551 CCGAAGGCATTTGTGCTAGTTACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
34813591 CCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
* *
34813631 CCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
34813671 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
34813711 CTGAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
34813751 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
34813790 CCGAAGG
1 CCGAAGG
34813797 TACTTGGGTT
Statistics
Matches: 231, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 16 0.07
40 214 0.93
41 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:34817099 original size:68 final size:67
Alignment explanation
Indices: 34817027--34817176 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
34817017 CATCATGTGT
* * * *
34817027 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
34817089 ATGTAG
62 ATGTAG
** * *
34817095 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
34817160 AG
66 AG
34817162 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
34817177 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:34817132 original size:64 final size:64
Alignment explanation
Indices: 34817051--34817234 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
34817041 AGACATTATG
* *
34817051 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
34817115 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
34817180 AA
63 AA
* * * *
34817182 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
34817235 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:34821574 original size:64 final size:64
Alignment explanation
Indices: 34821494--34821677 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
34821484 AGACATTATG
* * * *
34821494 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
34821558 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTAAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGT---GTACACCATGTAGACAAGAGAGCTACGAGAT
34821623 AA
63 AA
** *
34821625 ACTG--GCTAGGTCATATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
34821678 CGAACTATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 26 0.26
66 21 0.21
67 31 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:34828820 original size:43 final size:43
Alignment explanation
Indices: 34828771--34828888 Score: 166
Period size: 43 Copynumber: 2.7 Consensus size: 43
34828761 TTATATTCGA
* *
34828771 GCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATT-TG
1 GCCTTCGTGCCTAGCAGGCTTAATGCCGGTGATGTGTATTCAG
**
34828813 GCCCTTCGTGCCTAGCAGGCTTCCTGCCGGTGATGTGTATTCAG
1 G-CCTTCGTGCCTAGCAGGCTTAATGCCGGTGATGTGTATTCAG
* *
34828857 GCCTTTGTGCCTAGCAGGCGTAATGCCGGTGA
1 GCCTTCGTGCCTAGCAGGCTTAATGCCGGTGA
34828889 AATGATATGT
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
42 1 0.01
43 64 0.96
44 2 0.03
ACGTcount: A:0.13, C:0.25, G:0.32, T:0.30
Consensus pattern (43 bp):
GCCTTCGTGCCTAGCAGGCTTAATGCCGGTGATGTGTATTCAG
Found at i:34831786 original size:44 final size:42
Alignment explanation
Indices: 34831719--34831839 Score: 145
Period size: 44 Copynumber: 2.8 Consensus size: 42
34831709 TTTCGATATC
* * *
34831719 TGATTTCGTGTAAGACCACGTCTGGGACCTTGGCACCG-ATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCACCGCATA
*
34831760 TGAGATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGCATA
1 T--GATTT-CGTGTAAGACCATGTCTGGGACATTGGCACCGCATA
* * *
34831805 TGATTTCGTGTGAGACCCTGTCTGGGACAGTGGCA
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
34831840 TCGATATTTG
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
41 1 0.01
42 26 0.38
43 10 0.14
44 29 0.42
45 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATTGGCACCGCATA
Found at i:34831827 original size:42 final size:41
Alignment explanation
Indices: 34831719--34831846 Score: 150
Period size: 42 Copynumber: 3.0 Consensus size: 41
34831709 TTTCGATATC
* * *
34831719 TGATTTCGTGTAAGACCAC-GTCTGGGACCTTGGCACCGATT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACATTGGCATCGATA
*
34831760 TGAGATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGCATA
1 T--GATTT-CGTGTAAGACCCTGTCTGGGACATTGGCATCG-ATA
* *
34831805 TGATTTCGTGTGAGACCCTGTCTGGGACAGTGGCATCGATA
1 TGATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATA
34831846 T
1 T
34831847 TTGATAACAT
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
41 5 0.07
42 29 0.39
43 10 0.13
44 28 0.37
45 3 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATA
Found at i:34831875 original size:43 final size:43
Alignment explanation
Indices: 34831711--34831883 Score: 149
Period size: 43 Copynumber: 4.0 Consensus size: 43
34831701 ACATAGGATT
* * **
34831711 TCGATATCTGATTTCGTGTAAGACCACGTCTGGGACCTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGGGACAGTGGCA
* * * *
34831754 CCGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATT-TGA-TTACGTGTAAGACCACGTCTGGGACAGTGGCA
* *
34831798 TCGCATA--TGATTTCGTGTGAGACC-CTGTCTGGGACAGTGGCA
1 TCG-ATATTTGATTACGTGTAAGACCAC-GTCTGGGACAGTGGCA
* * *
34831840 TCGATATTTGATAACATGTAAGACCACGTTTGGGAC-GTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGGGACAG-TGGCA
34831883 T
1 T
34831884 TGTACGAGTT
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
41 3 0.03
42 32 0.31
43 35 0.34
44 32 0.31
45 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCACGTCTGGGACAGTGGCA
Found at i:34835218 original size:67 final size:67
Alignment explanation
Indices: 34835110--34835239 Score: 224
Period size: 67 Copynumber: 1.9 Consensus size: 67
34835100 AGCTTGCTTG
** *
34835110 AACACTTTTCTTTCCCAGGGTTTCCATGTCTTAATTTGGGGAATATGATATAAAATGATAATAGA
1 AACACTTCCCTTTCCCAGGGTTTCCATGTCTTAATTTGGGGAAGATGATATAAAATGATAATAGA
34835175 AA
66 AA
*
34835177 AACACTTCCCTTTCCTAGGGTTTCCATGTCTTAATTTGGGGAAGATGATATAAAATGATAATA
1 AACACTTCCCTTTCCCAGGGTTTCCATGTCTTAATTTGGGGAAGATGATATAAAATGATAATA
34835240 TTGTTCTATT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (67 bp):
AACACTTCCCTTTCCCAGGGTTTCCATGTCTTAATTTGGGGAAGATGATATAAAATGATAATAGA
AA
Found at i:34849253 original size:10 final size:10
Alignment explanation
Indices: 34849238--34849262 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
34849228 CACAATTCAT
34849238 TTTCACCACA
1 TTTCACCACA
34849248 TTTCACCACA
1 TTTCACCACA
34849258 TTTCA
1 TTTCA
34849263 TACATCACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36
Consensus pattern (10 bp):
TTTCACCACA
Found at i:34850440 original size:34 final size:34
Alignment explanation
Indices: 34850374--34850440 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
34850364 TTGGAAAATA
* *
34850374 TTAAGTTCTGTTTGAATAATGAATTTTAATGGAG
1 TTAAGTTCCGTTTGAATAATGAATTTCAATGGAG
** *
34850408 TTAAGTTCCGTTTGAATGGTGAATTTCGATGGA
1 TTAAGTTCCGTTTGAATAATGAATTTCAATGGA
34850441 TATATGTGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.42
Consensus pattern (34 bp):
TTAAGTTCCGTTTGAATAATGAATTTCAATGGAG
Found at i:34858630 original size:53 final size:53
Alignment explanation
Indices: 34858448--34858651 Score: 185
Period size: 53 Copynumber: 3.8 Consensus size: 53
34858438 AGGGTTTAAG
* * * * * *
34858448 GATACCAAGTAAGACCATGCCAAGGCATGGCACTGGTAAGCTTTACAAGG-AAA
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * * * *
34858501 GGAAATCATGTAAGACCATGTCAAGATATGGCATTGATAAACTACTATAAGGCAAA
1 -GATACCACGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAA
* * * *
34858557 GATCCCATGTAAGACCATGTCAAGGCATGGCAATGGTGAGTTCATAAGGCAAA
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* *
34858610 GATACCACGTAAGACTATGTCAAGACATTGCAATGGTAAGTT
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
34858652 TAAAAAGAAA
Statistics
Matches: 119, Mismatches: 28, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
53 46 0.39
54 33 0.28
55 37 0.31
56 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.22
Consensus pattern (53 bp):
GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:34860634 original size:27 final size:28
Alignment explanation
Indices: 34860550--34860646 Score: 133
Period size: 27 Copynumber: 3.5 Consensus size: 28
34860540 CATGAGATTG
* * * *
34860550 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
34860579 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
34860607 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
34860634 GCACTGAGTGTGC
1 GCACTAAGTGTGC
34860647 AGACTTAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
29 18 0.29
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:34860658 original size:27 final size:27
Alignment explanation
Indices: 34860578--34860660 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
34860568 TAAATTGTAC
* *
34860578 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
34860606 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
34860633 AGCACTGAGTGTGCAGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
34860660 A
1 A
34860661 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:34860661 original size:29 final size:27
Alignment explanation
Indices: 34860550--34860661 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
34860540 CATGAGATTG
** * *
34860550 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
34860579 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
34860607 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
34860634 GCACTGAGTGTGCAGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
34860662 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:34863299 original size:16 final size:16
Alignment explanation
Indices: 34863278--34863308 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34863268 ATTGGCAAAA
34863278 GCCAAAATGCCGAAAT
1 GCCAAAATGCCGAAAT
*
34863294 GCCAAAATGTCGAAA
1 GCCAAAATGCCGAAA
34863309 AGCTGAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.23, G:0.19, T:0.13
Consensus pattern (16 bp):
GCCAAAATGCCGAAAT
Found at i:34863562 original size:28 final size:29
Alignment explanation
Indices: 34863526--34863587 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
34863516 GTAAGCATGA
*
34863526 ATATGAATGTGA-CTAGGCCTAATGAGCC
1 ATATAAATGTGATCTAGGCCTAATGAGCC
* * *
34863554 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATCTAGGCCTAATGAGCC
34863583 ATATA
1 ATATA
34863588 CAGGTGGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 11 0.38
29 18 0.62
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATCTAGGCCTAATGAGCC
Found at i:34863583 original size:29 final size:29
Alignment explanation
Indices: 34863541--34863640 Score: 112
Period size: 29 Copynumber: 3.5 Consensus size: 29
34863531 AATGTGACTA
*
34863541 GGCCTAATGAGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * *
34863570 GGCCTAATGGGCCATATACAGGTGGTTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * * *
34863599 AGCCTAATCGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
34863627 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
34863641 GATATAGGTA
Statistics
Matches: 57, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
28 14 0.25
29 43 0.75
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Done.