Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 112 of 255
Found at i:35571147 original size:41 final size:40
Alignment explanation
Indices: 35571006--35571191 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
35570996 TCGAATGATG
* * * *
35571006 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
35571046 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
35571086 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACATAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC-TAAA
*
35571126 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
35571167 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35571192 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 20 0.16
40 71 0.58
41 32 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35571209 original size:80 final size:79
Alignment explanation
Indices: 35571059--35571224 Score: 185
Period size: 80 Copynumber: 2.1 Consensus size: 79
35571049 GGACTAAGAT
* * **
35571059 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTACATA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACATA
*
35571124 AATCCGGGTTAAGTC
66 AATCC-GGTTAAATC
* * *
35571139 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
35571202 -TATATCCGGTTAAATT
63 ATAAATCCGGTTAAATC
35571218 CCGAAGG
1 CCGAAGG
35571225 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 16 0.22
80 40 0.55
81 17 0.23
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACATA
AATCCGGTTAAATC
Found at i:35576315 original size:39 final size:40
Alignment explanation
Indices: 35576190--35576374 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
35576180 GCTACTCGTT
*
35576190 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
35576230 AAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTGGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
35576270 CCAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
35576309 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
35576350 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
35576375 CATCATTCGA
Statistics
Matches: 119, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 74 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:35576358 original size:79 final size:80
Alignment explanation
Indices: 35576190--35576374 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
35576180 GCTACTCGTT
* *
35576190 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAAAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCAAAAATGCCTTCGGGACTTAACCCG
* *
35576254 GATTTAGTAACTGGCAC
64 GATATAGTAACTAGCAC
* * * * **
35576271 CAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAAAAATGCCTTCGGGA-CTTAACCCGG
* *
35576334 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
35576350 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
35576375 CATCATTCGA
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
78 3 0.03
79 56 0.65
80 24 0.28
81 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAAAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:35582610 original size:40 final size:40
Alignment explanation
Indices: 35582419--35582603 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
35582409 TCGAATGATG
* * * *
35582419 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
35582459 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
35582499 TCCGGGATAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
35582538 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
35582579 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35582604 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35582625 original size:79 final size:79
Alignment explanation
Indices: 35582472--35582636 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
35582462 GGACTAAGAT
* **
35582472 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGATAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGATAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
35582537 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
35582551 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGATAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
35582614 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
35582630 CCGAAGG
1 CCGAAGG
35582637 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGATAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:35593288 original size:17 final size:17
Alignment explanation
Indices: 35593253--35593287 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
35593243 TTTCTCTCTA
*
35593253 TTCTTTTTTATTTCTTT
1 TTCTTTTTCATTTCTTT
35593270 TTCTTTTTCA-TTCTTT
1 TTCTTTTTCATTTCTTT
35593286 TT
1 TT
35593288 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (17 bp):
TTCTTTTTCATTTCTTT
Found at i:35593303 original size:30 final size:27
Alignment explanation
Indices: 35593252--35593306 Score: 74
Period size: 30 Copynumber: 1.9 Consensus size: 27
35593242 TTTTCTCTCT
*
35593252 ATTCTTTTTTATTTCTTTTTCTTTTTC
1 ATTCTTTTTTATTTATTTTTCTTTTTC
35593279 ATTCTTTTTTACTTGTTATTTTTCTTTT
1 ATTCTTTTTTA--T-TTATTTTTCTTTT
35593307 GATTTTTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 11 0.46
29 1 0.04
30 12 0.50
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (27 bp):
ATTCTTTTTTATTTATTTTTCTTTTTC
Found at i:35603676 original size:21 final size:21
Alignment explanation
Indices: 35603650--35603689 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
35603640 AAATCTATCT
35603650 AAGAAGATTGGAACTTAAGCA
1 AAGAAGATTGGAACTTAAGCA
35603671 AAGAAGATTGGAACTTAAG
1 AAGAAGATTGGAACTTAAG
35603690 TAGGACCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.07, G:0.25, T:0.20
Consensus pattern (21 bp):
AAGAAGATTGGAACTTAAGCA
Found at i:35606646 original size:20 final size:20
Alignment explanation
Indices: 35606621--35606663 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
35606611 TACATTACAT
35606621 ATTTTCACCTAACTTTCCAC
1 ATTTTCACCTAACTTTCCAC
35606641 ATTTTCACCTAACTTTCCAC
1 ATTTTCACCTAACTTTCCAC
35606661 ATT
1 ATT
35606664 GACCAAACGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTTTCACCTAACTTTCCAC
Found at i:35606939 original size:37 final size:36
Alignment explanation
Indices: 35606886--35606988 Score: 143
Period size: 37 Copynumber: 2.8 Consensus size: 36
35606876 TGAATAGTCC
*
35606886 CCACACGTAGTTATCGGCTCTTACCCGGACAAAACCT
1 CCACACGTAGTCATCGG-TCTTACCCGGACAAAACCT
* *
35606923 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATC-GGTCTTACCCGGACAAAACCT
*
35606960 CCACACGTAGTCATCAGGACTTACCCGGA
1 CCACACGTAGTCATC-GGTCTTACCCGGA
35606989 ATATATTTCC
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
37 58 0.97
38 2 0.03
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.21
Consensus pattern (36 bp):
CCACACGTAGTCATCGGTCTTACCCGGACAAAACCT
Found at i:35607187 original size:48 final size:48
Alignment explanation
Indices: 35607129--35607697 Score: 1003
Period size: 48 Copynumber: 11.9 Consensus size: 48
35607119 ATATACACAC
*
35607129 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
35607177 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
35607225 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
35607273 ATCTCATACATATTTCACACTAGACATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
35607321 ATCTCATTCATATTTCACACTAGCCATTCCGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
35607369 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
35607417 ATCTCATACATATTTCACAGTAGCCATTCGGTTTTACCACATATACTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
35607465 ATCACATACATATTTCACATTAGCCATTCTGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
35607513 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
35607561 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
35607609 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACTTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
35607657 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
35607698 CACATATATA
Statistics
Matches: 495, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 495 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:35610888 original size:29 final size:29
Alignment explanation
Indices: 35610855--35610956 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
35610845 GATTAAAGAA
35610855 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* * **
35610884 CTCGCACACATAATG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
35610912 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
35610941 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
35610957 TCAGTTGAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:35610895 original size:57 final size:57
Alignment explanation
Indices: 35610828--35610988 Score: 216
Period size: 57 Copynumber: 2.8 Consensus size: 57
35610818 CTGACTGATT
** * *
35610828 TCGCACACATAGCACTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* **
35610885 TCGCACACATAATGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * *
35610942 TGGCACACATAGTGCTC-AGTTGAAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGA-TTGAAGAACTCGCACACATAGTGCCTCA
35610989 TAACTCCAGC
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
56 1 0.01
57 91 0.99
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:35610976 original size:28 final size:27
Alignment explanation
Indices: 35610828--35610984 Score: 125
Period size: 28 Copynumber: 5.6 Consensus size: 27
35610818 CTGACTGATT
** *
35610828 TCGCACACATAGCACTCGATTAAAGAAC
1 TCGCACACATAGTGCTCAATT-AAGAAC
**
35610856 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTG-CTCAATTAAGAA-C
* *
35610885 TCGCACACATAATGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCAATT-AAGAAC
* * *
35610913 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCAATTA-AGAAC
* *
35610942 TGGCACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTCAATT-AAGAAC
* *
35610970 TTGCACACACAGTGC
1 TCGCACACATAGTGC
35610985 CTCATAACTC
Statistics
Matches: 102, Mismatches: 21, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
28 57 0.56
29 45 0.44
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (27 bp):
TCGCACACATAGTGCTCAATTAAGAAC
Found at i:35611060 original size:40 final size:40
Alignment explanation
Indices: 35611016--35611389 Score: 502
Period size: 40 Copynumber: 9.3 Consensus size: 40
35611006 CCTTCGAGGT
* **
35611016 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
* ** * *
35611056 TTAGCCCGGATACATTACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
* * * *
35611096 TTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
* * **
35611136 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
*
35611176 TTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
35611216 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATAACACT-AGCACGAATGCTCTTCGGGAC
*
35611256 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATATAACACT-AGCACGAATGCTCTTCGGGAC
* *
35611296 TTAGCTCGGATATAACA-TCAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATATAACACT-AGCACGAATGCTCTTCGGGAC
*
35611336 TTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
*
35611376 TTAGCCCGGCTATA
1 TTAGCCCGGATATA
35611390 TAACTCTCAA
Statistics
Matches: 311, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
40 311 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
Found at i:35612767 original size:37 final size:37
Alignment explanation
Indices: 35612663--35612768 Score: 158
Period size: 37 Copynumber: 2.9 Consensus size: 37
35612653 GCTCGAATAG
* *
35612663 TCCCCACACGTAGTTATCGGGTCTTACCCAGACAAAA
1 TCCCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
35612700 TCCCCACACGTAGTCATCGGGTCTTTCCCGGACATAA
1 TCCCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
35612737 TCTCCACATGTAGTCATCGGGTCTTACCCGGA
1 TCCCCACACGTAGTCATCGGGTCTTACCCGGA
35612769 ATATATTTCC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.25
Consensus pattern (37 bp):
TCCCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:35612970 original size:48 final size:48
Alignment explanation
Indices: 35612915--35613709 Score: 1291
Period size: 48 Copynumber: 16.7 Consensus size: 48
35612905 ACACACCTCC
*
35612915 TACATATTTCACACTATCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
35612963 TACATATTTGACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
35613011 CACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
** * *
35613059 TTTATATTTCACTCTAGCCATTCGGCTTTACCACATATACAAATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * * *
35613107 TATATATTTCACATTAGCCATTCGGCTTTACCGCATATACGTATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
35613155 TACATATTTCACACTAGCCATTCAGCTTTACCACATATACCTATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
35613203 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
35613251 TACATATTTCACACTAGCCATTCGGCTTTTCCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
35613299 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
35613347 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
35613395 TACATATTTCACACTAGCTATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
35613443 TACATATTTCACATTAGCCA-------TT-CCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
35613483 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
35613531 TACATATTCCACACTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
35613579 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATTTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
35613627 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
35613675 TATATATTTCACATTAGCCATTCGGCTTTACCACA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACA
35613710 CACATATATA
Statistics
Matches: 695, Mismatches: 44, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
40 38 0.05
41 2 0.00
47 2 0.00
48 653 0.94
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:35623065 original size:15 final size:15
Alignment explanation
Indices: 35623042--35623075 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
35623032 TAACTTTCTT
*
35623042 GAGGCAAAATCATAG
1 GAGGAAAAATCATAG
*
35623057 GAGGAAAAATCCTAG
1 GAGGAAAAATCATAG
35623072 GAGG
1 GAGG
35623076 TATAAGAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.12, G:0.32, T:0.12
Consensus pattern (15 bp):
GAGGAAAAATCATAG
Found at i:35631978 original size:40 final size:40
Alignment explanation
Indices: 35631926--35632233 Score: 438
Period size: 40 Copynumber: 7.7 Consensus size: 40
35631916 ATTACCACAA
* * ** *
35631926 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
35631966 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
35632006 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
35632048 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
35632088 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
35632128 GCATAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
35632168 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
35632208 GCACAATTGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAGCCC
35632234 AGAAAAATTC
Statistics
Matches: 246, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
40 205 0.83
41 4 0.02
42 37 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:35632181 original size:162 final size:160
Alignment explanation
Indices: 35631926--35632233 Score: 454
Period size: 162 Copynumber: 1.9 Consensus size: 160
35631916 ATTACCACAA
* * * * *
35631926 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
* * * *
35631991 CGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAAT
66 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AAATC-ACTAGCACAAAT
*
35632056 GCCTGCGGGTCTTAGCCCGGATATATCAACTC
129 GCCTGCGGGACTTAGCCCGGATATATCAACTC
* * * *
35632088 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCATAAATGCCTGCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
*
35632153 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGC
66 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGC
*
35632218 CTTCGGGACTTAGCCC
131 CTGCGGGACTTAGCCC
35632234 AGAAAAATTC
Statistics
Matches: 130, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
160 26 0.20
161 4 0.03
162 100 0.77
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (160 bp):
GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGC
CTGCGGGACTTAGCCCGGATATATCAACTC
Found at i:35640579 original size:40 final size:40
Alignment explanation
Indices: 35640527--35640834 Score: 429
Period size: 40 Copynumber: 7.7 Consensus size: 40
35640517 ATTACCACAA
* * ** *
35640527 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
35640567 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
35640607 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
* *
35640649 GCACAAATGCCTGCAGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
35640689 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
35640729 GCATAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
35640769 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
35640809 GCACAATTGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAGCCC
35640835 AGAAAAATTC
Statistics
Matches: 244, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
40 204 0.84
41 4 0.02
42 36 0.15
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:35640782 original size:162 final size:160
Alignment explanation
Indices: 35640527--35640834 Score: 445
Period size: 162 Copynumber: 1.9 Consensus size: 160
35640517 ATTACCACAA
* * * * *
35640527 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
* * * *
35640592 CGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAAT
66 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AAATC-ACTAGCACAAAT
*
35640657 GCCTGCAGGTCTTAGCCCGGATATATCAACTC
129 GCCTGCAGGACTTAGCCCGGATATATCAACTC
* * * *
35640689 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCATAAATGCCTGCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
*
35640754 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGC
66 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGC
* *
35640819 CTTCGGGACTTAGCCC
131 CTGCAGGACTTAGCCC
35640835 AGAAAAATTC
Statistics
Matches: 129, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
160 25 0.19
161 4 0.03
162 100 0.78
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (160 bp):
GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGC
CTGCAGGACTTAGCCCGGATATATCAACTC
Found at i:35647729 original size:40 final size:40
Alignment explanation
Indices: 35647677--35647983 Score: 429
Period size: 40 Copynumber: 7.7 Consensus size: 40
35647667 ATTACCACAA
* * ** *
35647677 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
35647717 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
35647757 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
* *
35647799 ACACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
35647839 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
35647879 GCA-AAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
35647918 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
35647958 GCACAATTGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAGCCC
35647984 AGAAAAATTC
Statistics
Matches: 244, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
39 39 0.16
40 165 0.68
41 4 0.02
42 36 0.15
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:35647919 original size:79 final size:80
Alignment explanation
Indices: 35647677--35647983 Score: 429
Period size: 79 Copynumber: 3.8 Consensus size: 80
35647667 ATTACCACAA
* * ** * * *
35647677 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCC
*
35647742 CGGATATATCAACTT
66 CGGATATATCAACTC
* *
35647757 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCACACAAATGCCTGCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
35647822 CCCGGATATATCAACTC
64 CCCGGATATATCAACTC
*
35647839 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCA-AAATGCCTGCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCC
35647903 CGGATATATCAACTC
66 CGGATATATCAACTC
* * * * *
35647918 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTGCGGGTCTTAGC
35647982 CC
65 CC
35647984 AGAAAAATTC
Statistics
Matches: 206, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
79 71 0.34
80 64 0.31
82 71 0.34
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCC
CGGATATATCAACTC
Found at i:35653597 original size:49 final size:47
Alignment explanation
Indices: 35653398--35653669 Score: 472
Period size: 47 Copynumber: 5.7 Consensus size: 47
35653388 ATGATAGTAT
35653398 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
35653445 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
35653492 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
35653539 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
* * *
35653588 TGCCTAATGGCCGTTGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
35653637 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
35653670 CCCGAAGGGC
Statistics
Matches: 217, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
47 127 0.59
49 86 0.40
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.31
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:35653837 original size:37 final size:37
Alignment explanation
Indices: 35653787--35653865 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35653777 CCGAGCTCTA
* *
35653787 AAGACCCGATAACTACGTGTGGGGATTTTGCCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
* *
35653824 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
35653861 AAGAC
1 AAGAC
35653866 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
Found at i:35658328 original size:18 final size:18
Alignment explanation
Indices: 35658305--35658341 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
35658295 TTGTCAACGG
*
35658305 AGTCAGAATCATTGAAAA
1 AGTCAGAATCATCGAAAA
35658323 AGTCAGAATCATCGAAAA
1 AGTCAGAATCATCGAAAA
35658341 A
1 A
35658342 CCTTTCATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (18 bp):
AGTCAGAATCATCGAAAA
Found at i:35669861 original size:22 final size:22
Alignment explanation
Indices: 35669833--35669875 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
35669823 ACTAGACTCA
35669833 GTTTCG-TACTGTTCATATGAAC
1 GTTTCGTTACT-TTCATATGAAC
*
35669855 GTTTCGTTACTTTCCTATGAA
1 GTTTCGTTACTTTCATATGAA
35669876 AATAGATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (22 bp):
GTTTCGTTACTTTCATATGAAC
Found at i:35670825 original size:79 final size:79
Alignment explanation
Indices: 35670681--35670899 Score: 248
Period size: 79 Copynumber: 2.7 Consensus size: 79
35670671 GAATCACATA
* * * * *
35670681 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
35670745 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
35670760 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
*
35670823 GTAACTCGCACAAATT
64 GTAACTCGCACAAATG
* * *
35670839 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
35670900 TATCATTTGA
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 60 0.50
80 45 0.38
81 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:35670828 original size:39 final size:41
Alignment explanation
Indices: 35670695--35670899 Score: 228
Period size: 40 Copynumber: 5.1 Consensus size: 41
35670685 CGGAATTTAA
* *
35670695 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35670735 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35670775 CCGG-ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35670814 CCGGAAT-TAGTAACTCGCACAAATTCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
35670854 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
35670895 CCGGA
1 CCGGA
35670900 TATCATTTGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 81 0.57
41 22 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:35676475 original size:28 final size:28
Alignment explanation
Indices: 35676443--35676512 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
35676433 AATGAGATTG
*
35676443 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
35676471 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
35676499 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
35676513 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:35676785 original size:12 final size:12
Alignment explanation
Indices: 35676768--35676793 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
35676758 GTGGAAATGC
35676768 ATCAAATATCAT
1 ATCAAATATCAT
35676780 ATCAAATATCAT
1 ATCAAATATCAT
35676792 AT
1 AT
35676794 GAGATGTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (12 bp):
ATCAAATATCAT
Found at i:35683995 original size:19 final size:19
Alignment explanation
Indices: 35683971--35684008 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
35683961 TTTTTCTTGT
35683971 TCTATAATGTCAAATTTAA
1 TCTATAATGTCAAATTTAA
35683990 TCTATAATGTCAAATTTAA
1 TCTATAATGTCAAATTTAA
35684009 CTTATTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (19 bp):
TCTATAATGTCAAATTTAA
Found at i:35700298 original size:6 final size:6
Alignment explanation
Indices: 35700268--35700361 Score: 57
Period size: 6 Copynumber: 15.3 Consensus size: 6
35700258 GCAATACATT
* * * *
35700268 ATCAGA ATTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
35700317 ATTAGA ATCATA ATCAGT ATCAGGTA A-CAGA ATCAAA ATTAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
35700362 GTAAATGCAA
Statistics
Matches: 65, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
5 3 0.05
6 54 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.22
Consensus pattern (6 bp):
ATCAGA
Found at i:35700318 original size:37 final size:36
Alignment explanation
Indices: 35700277--35700361 Score: 90
Period size: 31 Copynumber: 2.4 Consensus size: 36
35700267 TATCAGAATT
*
35700277 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAAT-AGAATCAGAATCAGAATCAGGTAAC
* *
35700314 AGAAT-----TAGAATCATAATCAGTATCAGGTAAC
1 AGAATCAAAATAGAATCAGAATCAGAATCAGGTAAC
35700345 AGAATCAAAATTAGAAT
1 AGAATCAAAA-TAGAAT
35700362 GTAAATGCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
31 27 0.69
32 1 0.03
37 11 0.28
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (36 bp):
AGAATCAAAATAGAATCAGAATCAGAATCAGGTAAC
Found at i:35700332 original size:31 final size:31
Alignment explanation
Indices: 35700289--35700349 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
35700279 AATCAAAATG
*
35700289 AGAATCAGAATCAGAATCAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAGGTAACAGAATT
* *
35700320 AGAATCATAATCAGTATCAGGTAACAGAAT
1 AGAATCAGAATCAGAATCAGGTAACAGAAT
35700350 CAAAATTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATT
Found at i:35700931 original size:26 final size:27
Alignment explanation
Indices: 35700855--35700964 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
35700845 TCGATCAGTC
* * *
35700855 AACAGATA-TTGTGACAGAGTCACCAG
1 AACAGATATTTGTGGCATAGCCACCAG
*
35700881 ATACAGATA-TTGTGGCAGAGCCACCAG
1 A-ACAGATATTTGTGGCATAGCCACCAG
*
35700908 AACAGATATTTGTGGCATA-ACACCAG
1 AACAGATATTTGTGGCATAGCCACCAG
*
35700934 AAACAGATATTTGTGACATAGCCACCAG
1 -AACAGATATTTGTGGCATAGCCACCAG
35700962 AAC
1 AAC
35700965 GCTTCCTCCA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 14 0.19
27 54 0.73
28 6 0.08
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (27 bp):
AACAGATATTTGTGGCATAGCCACCAG
Found at i:35708603 original size:13 final size:14
Alignment explanation
Indices: 35708579--35708608 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
35708569 GGAGTGTAGG
35708579 TTATTATTATTTAT
1 TTATTATTATTTAT
35708593 TTATT-TTATTTAT
1 TTATTATTATTTAT
35708606 TTA
1 TTA
35708609 GTATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATTATTATTTAT
Found at i:35709401 original size:8 final size:8
Alignment explanation
Indices: 35709388--35709433 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
35709378 TCTGCAAATC
35709388 CCGAAAAG
1 CCGAAAAG
*
35709396 CCGAAATG
1 CCGAAAAG
35709404 CCGAAAAG
1 CCGAAAAG
* *
35709412 CTGAAATG
1 CCGAAAAG
*
35709420 CCGAAAAC
1 CCGAAAAG
35709428 CCGAAA
1 CCGAAA
35709434 GTTTGGCTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.46, C:0.26, G:0.22, T:0.07
Consensus pattern (8 bp):
CCGAAAAG
Found at i:35709407 original size:16 final size:16
Alignment explanation
Indices: 35709383--35709433 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
35709373 GTAGATCTGC
*
35709383 AAATCCCGAAAAGCCG
1 AAATGCCGAAAAGCCG
*
35709399 AAATGCCGAAAAGCTG
1 AAATGCCGAAAAGCCG
*
35709415 AAATGCCGAAAACCCG
1 AAATGCCGAAAAGCCG
35709431 AAA
1 AAA
35709434 GTTTGGCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.47, C:0.25, G:0.20, T:0.08
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:35709576 original size:18 final size:19
Alignment explanation
Indices: 35709541--35709578 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
35709531 TGAATTGGCC
*
35709541 AAATGGGCCGGAATGGGCT
1 AAATGGGCCCGAATGGGCT
35709560 AAATGGGCCCG-ATGGGCT
1 AAATGGGCCCGAATGGGCT
35709578 A
1 A
35709579 TCGGGCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.26, C:0.18, G:0.39, T:0.16
Consensus pattern (19 bp):
AAATGGGCCCGAATGGGCT
Found at i:35709714 original size:29 final size:29
Alignment explanation
Indices: 35709650--35709762 Score: 167
Period size: 28 Copynumber: 4.0 Consensus size: 29
35709640 CATGACTGTA
35709650 AATGTGATTTGGGCCTAATGGG-CATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
35709678 AATGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* *
35709707 AATGTGATTTGGGCCTCATGAGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * *
35709736 AAAGAGA-TTGGGCCTAGTGGGCCATAT
1 AATGTGATTTGGGCCTAATGGGCCATAT
35709763 ACAGGTATGT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 39 0.51
29 38 0.49
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:35709747 original size:57 final size:57
Alignment explanation
Indices: 35709650--35709762 Score: 165
Period size: 57 Copynumber: 2.0 Consensus size: 57
35709640 CATGACTGTA
* * *
35709650 AATGTGATTTGGGCCTAATGGGCATATGAATGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCATATG
* *
35709707 AATGTGATTTGGGCCTCATGAGCCATATGAAAGAGA-TTGGGCCTAGTGGGCCATAT
1 AATGTGATTTGGGCCTAATG-GCCATATGAAAGAGATTTGGGCCTAATGGGCCATAT
35709763 ACAGGTATGT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
57 38 0.76
58 12 0.24
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (57 bp):
AATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCATATG
Found at i:35713040 original size:30 final size:30
Alignment explanation
Indices: 35713006--35713068 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
35712996 TTAGGAACAT
* * * *
35713006 CCTCTTGGTCTCACCTAGTCATATAGATTA
1 CCTCTTGGTCTCACATAGGCATAGAAATTA
35713036 CCTCTTGGTCTCACATAGGCATAGAAATTA
1 CCTCTTGGTCTCACATAGGCATAGAAATTA
35713066 CCT
1 CCT
35713069 TTCGGTCACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.33
Consensus pattern (30 bp):
CCTCTTGGTCTCACATAGGCATAGAAATTA
Found at i:35713522 original size:22 final size:22
Alignment explanation
Indices: 35713497--35713538 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
35713487 TAAAAATGAA
35713497 AAAAAAAAAGAAAAAAAAAGGG
1 AAAAAAAAAGAAAAAAAAAGGG
* *
35713519 AAAAGAAAAGAAAAGAAAAG
1 AAAAAAAAAGAAAAAAAAAG
35713539 AAAAACCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAGAAAAAAAAAGGG
Found at i:35713526 original size:5 final size:5
Alignment explanation
Indices: 35713497--35713542 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
35713487 TAAAAATGAA
* *
35713497 AAAAA AAAAG AAAAA AAAAGGG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAA--G AAAAG AAAAG AAAAG AAAAG AAAA
35713543 ACCCTAACCC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
5 32 0.89
7 4 0.11
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:35716014 original size:26 final size:26
Alignment explanation
Indices: 35715985--35716037 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
35715975 TAAAATTAAG
35715985 TATGTCTATTTGCTTATAAACTTACC
1 TATGTCTATTTGCTTATAAACTTACC
35716011 TATGTCTATTTGCTTATAAACTTACC
1 TATGTCTATTTGCTTATAAACTTACC
35716037 T
1 T
35716038 TGGACGATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.08, T:0.47
Consensus pattern (26 bp):
TATGTCTATTTGCTTATAAACTTACC
Found at i:35716387 original size:24 final size:25
Alignment explanation
Indices: 35716354--35716403 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
35716344 AGTCCCTCAA
* *
35716354 TTTATTATTTTTGT-AATTTATTCC
1 TTTATCATTTTTGTCAATTTAGTCC
*
35716378 TTTATCATTTTTTTCAATTTAGTCC
1 TTTATCATTTTTGTCAATTTAGTCC
35716403 T
1 T
35716404 AATTACTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (25 bp):
TTTATCATTTTTGTCAATTTAGTCC
Found at i:35729238 original size:14 final size:14
Alignment explanation
Indices: 35729219--35729246 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
35729209 GTACGAAATT
35729219 TTCACACATAATAA
1 TTCACACATAATAA
35729233 TTCACACATAATAA
1 TTCACACATAATAA
35729247 GCACGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (14 bp):
TTCACACATAATAA
Found at i:35735929 original size:27 final size:27
Alignment explanation
Indices: 35735899--35736362 Score: 542
Period size: 27 Copynumber: 17.2 Consensus size: 27
35735889 AAAGTACTCC
35735899 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
35735926 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
35735953 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
35735980 -AAGTTTACAAAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
35736007 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
35736034 -TAGTTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
35736061 CGATTTATAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
35736088 TGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
35736115 CGATTTATAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
35736142 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
35736169 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
35736196 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
35736223 CAATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
35736250 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
35736277 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
35736304 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
35736331 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
35736358 TGATT
1 CGATT
35736363 ATGAAATTAC
Statistics
Matches: 379, Mismatches: 48, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.01
27 369 0.97
28 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:35736562 original size:27 final size:27
Alignment explanation
Indices: 35736367--35736562 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
35736357 TTGATTATGA
* *
35736367 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** *
35736394 AATTTTCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
35736421 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
35736448 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
35736475 AATTATCGAAATGCCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
35736502 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
35736529 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
35736556 AATTACC
1 AATTACC
35736563 ATTTTGCCCC
Statistics
Matches: 140, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:35736799 original size:27 final size:26
Alignment explanation
Indices: 35736761--35736843 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
35736751 CGGAGGAAGC
*
35736761 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
35736788 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
35736814 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
35736841 GTT
1 GTT
35736844 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:35737175 original size:27 final size:27
Alignment explanation
Indices: 35737153--35737226 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
35737143 TAGGTGGGTT
*
35737153 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
35737180 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
35737207 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
35737227 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:35737353 original size:6 final size:6
Alignment explanation
Indices: 35737344--35737652 Score: 289
Period size: 6 Copynumber: 50.8 Consensus size: 6
35737334 TTGCATTCAC
* *
35737344 ATTCTG ATTCTG ATTCTG -TGACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
35737393 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
35737441 ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCT- ATTACTA ATTCTG
1 ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
35737490 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * * * *
35737538 -TCACCTA ATTCTG ATTCTG ATTCTA ATTCTG -TCACCTA ATTCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
35737588 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
35737636 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
35737653 CATTTTGGTT
Statistics
Matches: 252, Mismatches: 25, Indels: 52
0.77 0.08 0.16
Matches are distributed among these distances:
5 18 0.07
6 210 0.83
7 19 0.08
8 5 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:35737484 original size:85 final size:85
Alignment explanation
Indices: 35737344--35737652 Score: 422
Period size: 91 Copynumber: 3.5 Consensus size: 85
35737334 TTGCATTCAC
*
35737344 ATTCTGATTCTGATTCTGTGACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
35737409 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
*
35737429 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTATTACTAATTCTGATTC
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAA---T-A--C
35737494 TGATTCTGATTCTGATTCTGTTACTG
60 TGATTCTGATTCTGATTCTGTTACTG
* * * *
35737520 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTCACCTAATTCTGATT
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTA-CTAATACTGATT
35737585 CTGATTCTGATTCTGTTACTAATATTG
65 CTGATTCTGATTCTGTTAC------TG
* *
35737612 ATTCTGATTCTGATTCTGTTAC-TGATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCT
35737653 CATTTTGGTT
Statistics
Matches: 202, Mismatches: 9, Indels: 20
0.87 0.04 0.09
Matches are distributed among these distances:
85 54 0.27
86 25 0.12
88 1 0.00
89 2 0.01
91 93 0.46
92 27 0.13
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:35737586 original size:37 final size:36
Alignment explanation
Indices: 35737402--35737598 Score: 99
Period size: 37 Copynumber: 5.4 Consensus size: 36
35737392 GTTACTAATA
* *
35737402 CTGATTCTGATTCTGATTCTGTTA-CTGATTCTGATT
1 CTGATTCTGATTCTAATTCTGTCACCT-ATTCTGATT
* *
35737438 CTGATTCTG-TCACGTAATTCTG--ATTCTGATTCTGATT
1 CTGATTCTGAT-TC-TAATTCTGTCA-CCT-ATTCTGATT
* * *
35737475 CT-ATTACTAATTCTGATTCTG--ATTCTGATTCTGATT
1 CTGATT-CTGATTCTAATTCTGTCA-CCT-ATTCTGATT
* * * * *
35737511 CTG-TTACTGATTCTGATTCTG--ATTCTGTCACCTAATT
1 CTGATT-CTGATTCTAATTCTGTCA-CCTAT--TCTGATT
35737548 CTGATTCTGATTCTAATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTAATTCTGTCACCT-ATTCTGATT
35737585 CTGATTCTGATTCT
1 CTGATTCTGATTCT
35737599 GTTACTAATA
Statistics
Matches: 134, Mismatches: 14, Indels: 25
0.77 0.08 0.14
Matches are distributed among these distances:
35 3 0.02
36 59 0.44
37 65 0.49
38 5 0.04
39 2 0.01
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (36 bp):
CTGATTCTGATTCTAATTCTGTCACCTATTCTGATT
Found at i:35738997 original size:41 final size:43
Alignment explanation
Indices: 35738893--35739004 Score: 120
Period size: 43 Copynumber: 2.7 Consensus size: 43
35738883 TCATACAATC
* *
35738893 CCAATGTCCCAGTCGTGGTCTTACATGTAATCAAATATCGATG
1 CCAATGTCCCAGACGTGGTCTTACATGAAATCAAATATCGATG
** *** * *
35738936 CCTTTGTCCCAGATAAGGTCTCACATGAAATCAGATA-C-ATG
1 CCAATGTCCCAGACGTGGTCTTACATGAAATCAAATATCGATG
*
35738977 CCAACGTCCCAGACGTGGTCTTACATGA
1 CCAATGTCCCAGACGTGGTCTTACATGA
35739005 TAACACATAT
Statistics
Matches: 53, Mismatches: 16, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
41 24 0.45
42 1 0.02
43 28 0.53
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
CCAATGTCCCAGACGTGGTCTTACATGAAATCAAATATCGATG
Found at i:35744605 original size:27 final size:27
Alignment explanation
Indices: 35744575--35744726 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
35744565 ATATTAAGTC
* *
35744575 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
35744602 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
* *
35744630 CGCAGACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
35744657 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
35744684 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
35744712 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35744727 GTACAATTTA
Statistics
Matches: 113, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
27 69 0.61
28 44 0.39
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:35744668 original size:55 final size:54
Alignment explanation
Indices: 35744575--35744726 Score: 223
Period size: 55 Copynumber: 2.8 Consensus size: 54
35744565 ATATTAAGTC
* *
35744575 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * * *
35744630 CGCAGACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
35744684 CGCACACTTAGTGCTACATAGTCCAACTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
35744727 GTACAATTTA
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 24 0.28
55 62 0.72
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:35744712 original size:82 final size:82
Alignment explanation
Indices: 35744575--35744726 Score: 241
Period size: 82 Copynumber: 1.9 Consensus size: 82
35744565 ATATTAAGTC
* * *
35744575 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCAGACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
35744640 GTGCTACATAGTCAATT
66 GTGCTACATAGTCAATT
* * * *
35744657 CGCACACTTAGTGCAACATAGTCAATTCGCACACTTAGTGCTACATAGTCCAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
35744722 GTGCT
66 GTGCT
35744727 GTACAATTTA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
82 63 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (82 bp):
CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAATT
Found at i:35750883 original size:27 final size:27
Alignment explanation
Indices: 35750853--35751014 Score: 202
Period size: 27 Copynumber: 6.1 Consensus size: 27
35750843 CCCTAATTGA
*
35750853 TAAAATGATTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
35750880 TAAAATGATTGTTTTGCCTTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
35750907 TAAAATGACTATTTTGCCC-T-TGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
*
35750932 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
35750959 TAAAATGACTGTTTTACCTTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * * *
35750986 TACAATGATTGTTTTTCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
35751013 TA
1 TA
35751015 TGTAACATCC
Statistics
Matches: 119, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
25 24 0.20
26 2 0.02
27 93 0.78
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:35756806 original size:102 final size:98
Alignment explanation
Indices: 35756617--35756859 Score: 308
Period size: 101 Copynumber: 2.4 Consensus size: 98
35756607 TATTGTGAGG
* * *
35756617 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACT
* *
35756682 AAGTGCAGGCTATTATGCGTACCCGG-TAACTTCGA
66 AAGTGCAGGCTACTACGCGTA-CCGGATAA-TT-GA
* * *
35756717 TCACGTGTGTTACTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTA
1 TCACGTGTG-TAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATT-GGTCACATGTGTAGTA
* * *
35756782 CTAAGTGTAGGCTACTACGTGTACCGGATAATTGG
64 CTAAGTGCAGGCTACTACGCGTACCGGATAATTGA
* * *
35756817 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
35756860 AGCTTTGGCT
Statistics
Matches: 124, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
99 30 0.24
100 18 0.15
101 39 0.31
102 37 0.30
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAATTGA
Found at i:35756855 original size:49 final size:50
Alignment explanation
Indices: 35756614--35756847 Score: 285
Period size: 49 Copynumber: 4.7 Consensus size: 50
35756604 ATCTATTGTG
* *
35756614 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
35756664 -GGTCGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCGG-TAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGGATAA-TT
* * * * * * **
35756714 CGATCACGTGTGTTACTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTG-TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
35756765 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
35756815 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
35756848 TGCGTACCAG
Statistics
Matches: 152, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
49 68 0.45
50 38 0.25
51 21 0.14
52 25 0.16
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:35762300 original size:43 final size:44
Alignment explanation
Indices: 35762235--35762334 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 44
35762225 ACAGCTTGAT
* * * *
35762235 GACATAACCGTGTGACCTTA-TTTCGAATTGCACATGGTCTAGC
1 GACATAGCCATGTGACCCTATTTTCGAATTGCACATGCTCTAGC
* *
35762278 GACATAGCCATGTGACCCTATTTTTGAATTGTACATGCTCTAGC
1 GACATAGCCATGTGACCCTATTTTCGAATTGCACATGCTCTAGC
*
35762322 CACAT-GACCATGT
1 GACATAG-CCATGT
35762335 CCCTGAGCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
43 18 0.38
44 30 0.62
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
GACATAGCCATGTGACCCTATTTTCGAATTGCACATGCTCTAGC
Found at i:35768544 original size:28 final size:28
Alignment explanation
Indices: 35768484--35768544 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
35768474 GATGACCAAA
* *
35768484 ATACCCCTGAGGGGTAAAAATTACTATT
1 ATACCCCTAAGGGGTAAAAATGACTATT
* * * *
35768512 CTACCCCTAATGGGTGAAAATGACTGTT
1 ATACCCCTAAGGGGTAAAAATGACTATT
35768540 ATACC
1 ATACC
35768545 TTAGAGGTAG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (28 bp):
ATACCCCTAAGGGGTAAAAATGACTATT
Found at i:35768733 original size:27 final size:27
Alignment explanation
Indices: 35768681--35768735 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
35768671 TACGGTTCTG
* *
35768681 GTGGCTTTGCCACGTATTCTGATATTA
1 GTGGCTATGCCACGTATTCCGATATTA
*
35768708 GTGGCTATGCCACGT-TTACCGCTATTA
1 GTGGCTATGCCACGTATT-CCGATATTA
35768735 G
1 G
35768736 CAGCTTTGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACGTATTCCGATATTA
Found at i:35768792 original size:23 final size:23
Alignment explanation
Indices: 35768729--35768786 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
35768719 ACGTTTACCG
35768729 CTATTAGCAGCTTTGCTGCGTTA
1 CTATTAGCAGCTTTGCTGCGTTA
*
35768752 CTATTAGCAGCTTTGCTGTGTTA
1 CTATTAGCAGCTTTGCTGCGTTA
*
35768775 CTGTTAGCAGCT
1 CTATTAGCAGCT
35768787 ACGCTGGGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (23 bp):
CTATTAGCAGCTTTGCTGCGTTA
Found at i:35771897 original size:21 final size:20
Alignment explanation
Indices: 35771871--35771916 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
35771861 TGAGAAAACC
35771871 TTGAGAAG-AATGAGAAAAGAA
1 TTGAGAAGAAATG-G-AAAGAA
35771892 TTGAG-AGAAATGGAAAGAA
1 TTGAGAAGAAATGGAAAGAA
35771911 TT-AGAA
1 TTGAGAA
35771917 AAGATCAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.09
19 9 0.39
20 3 0.13
21 9 0.39
ACGTcount: A:0.54, C:0.00, G:0.28, T:0.17
Consensus pattern (20 bp):
TTGAGAAGAAATGGAAAGAA
Found at i:35774617 original size:79 final size:81
Alignment explanation
Indices: 35774515--35774699 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
35774505 GCTCCTCGTT
* *
35774515 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
35774578 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
35774595 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
35774659 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
35774675 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
35774700 TATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:35774699 original size:40 final size:40
Alignment explanation
Indices: 35774515--35774702 Score: 240
Period size: 40 Copynumber: 4.7 Consensus size: 40
35774505 GCTCCTCGTT
* *
35774515 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
35774555 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
35774595 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
35774634 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
35774675 CAAA-GCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
35774703 CATTCAAATA
Statistics
Matches: 129, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 83 0.64
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:35780581 original size:23 final size:23
Alignment explanation
Indices: 35780538--35780583 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
35780528 AAATTTGGTG
*
35780538 TAATTTGGTTTAGTTATTTTAAT
1 TAATTTGGATTAGTTATTTTAAT
*
35780561 TAATTT-GATTAGTTTTATTTAAT
1 TAATTTGGATTAGTTAT-TTTAAT
35780584 CTCTACAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (23 bp):
TAATTTGGATTAGTTATTTTAAT
Found at i:35785950 original size:20 final size:20
Alignment explanation
Indices: 35785925--35785967 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
35785915 AATTTTGTAA
* *
35785925 AATTTTAGGGGCAAAATTAT
1 AATTTTAGGGACAAAATCAT
35785945 AATTTTAGGGACAAAATCAT
1 AATTTTAGGGACAAAATCAT
35785965 AAT
1 AAT
35785968 ATGTCCCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.07, G:0.16, T:0.33
Consensus pattern (20 bp):
AATTTTAGGGACAAAATCAT
Found at i:35789332 original size:18 final size:18
Alignment explanation
Indices: 35789309--35789350 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
35789299 TATGTAATTA
35789309 TGTGAATTACTTGATGAG
1 TGTGAATTACTTGATGAG
35789327 TGTGAATTACTTGATGAG
1 TGTGAATTACTTGATGAG
*
35789345 TATGAA
1 TGTGAA
35789351 CTATCACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.38
Consensus pattern (18 bp):
TGTGAATTACTTGATGAG
Found at i:35791282 original size:40 final size:40
Alignment explanation
Indices: 35791223--35791494 Score: 368
Period size: 40 Copynumber: 6.8 Consensus size: 40
35791213 CATTTGAATG
* * * *
35791223 ATATCCGGGCTAAGTCCCGAAGGCCTTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
35791263 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
35791303 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
35791343 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
35791383 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
35791423 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
35791463 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
35791495 TTGTGGTTAT
Statistics
Matches: 207, Mismatches: 22, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 2 0.01
40 199 0.96
41 6 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:35791440 original size:120 final size:120
Alignment explanation
Indices: 35791227--35791514 Score: 488
Period size: 120 Copynumber: 2.4 Consensus size: 120
35791217 TGAATGATAT
* * ** *
35791227 CCGGGCTAAGTCCCGAAGGCCTTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
35791292 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
35791347 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
35791412 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
* * *
35791467 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
35791515 ATTCCGAAGA
Statistics
Matches: 159, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 6 0.04
120 153 0.96
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (120 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
Found at i:35793031 original size:46 final size:46
Alignment explanation
Indices: 35792981--35793156 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
35792971 TGGTTGAGCA
* *
35792981 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
35793027 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
35793074 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
35793120 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
35793157 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 72 0.68
47 34 0.32
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:35793137 original size:93 final size:93
Alignment explanation
Indices: 35792978--35793148 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
35792968 GGATGGTTGA
* * *
35792978 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
35793043 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
35793071 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
35793136 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
35793149 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:35794917 original size:27 final size:27
Alignment explanation
Indices: 35794865--35794918 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
35794855 TATATATACA
35794865 ATCGAATATGTCACTTCATTATAAGTT
1 ATCGAATATGTCACTTCATTATAAGTT
35794892 ATCGAATATGTCACTTCATTATAAGTT
1 ATCGAATATGTCACTTCATTATAAGTT
35794919 CATGCCTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (27 bp):
ATCGAATATGTCACTTCATTATAAGTT
Found at i:35795291 original size:38 final size:38
Alignment explanation
Indices: 35795243--35795359 Score: 171
Period size: 38 Copynumber: 3.1 Consensus size: 38
35795233 GGCCTAAAGG
* * * *
35795243 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAAGACCAGCACGAAGCCTGCGGGATTTAA
*
35795281 CCCGGATATAAGACCAGCACGAAGCCTGCGAGATTTAA
1 CCCGGATATAAGACCAGCACGAAGCCTGCGGGATTTAA
*
35795319 CCCGGATATAAGACCAGCACGAAGCCTGCGGAATTATAA
1 CCCGGATATAAGACCAGCACGAAGCCTGCGGGATT-TAA
35795358 CC
1 CC
35795360 TGAAATCTTA
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 66 0.93
39 5 0.07
ACGTcount: A:0.33, C:0.27, G:0.22, T:0.17
Consensus pattern (38 bp):
CCCGGATATAAGACCAGCACGAAGCCTGCGGGATTTAA
Found at i:35795939 original size:27 final size:27
Alignment explanation
Indices: 35795903--35796005 Score: 80
Period size: 27 Copynumber: 3.5 Consensus size: 27
35795893 ACTGACTTCG
*
35795903 CACACTTAGTGCTCAGAAATTAATTCA
1 CACACATAGTGCTCAGAAATTAATTCA
* * *
35795930 CACACATAGTGCTTAAATCCAACTCGTACACATTCG
1 CACACATAGTGCTCAGA---AA-T--T--A-ATTCA
*
35795966 CACACTTAGTGCTCAGAAATTAATTCA
1 CACACATAGTGCTCAGAAATTAATTCA
35795993 CACACATAGTGCT
1 CACACATAGTGCT
35796006 TAAATCCAAC
Statistics
Matches: 58, Mismatches: 9, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
27 30 0.52
28 1 0.02
30 3 0.05
31 1 0.02
32 1 0.02
33 3 0.05
35 1 0.02
36 18 0.31
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.27
Consensus pattern (27 bp):
CACACATAGTGCTCAGAAATTAATTCA
Found at i:35795975 original size:63 final size:63
Alignment explanation
Indices: 35795899--35796023 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
35795889 AATAACTGAC
*
35795899 TTCGCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGTACACA
1 TTCGCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACACA
35795962 TTCGCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACAC
1 TTCGCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACAC
35796024 TTAATGGTCA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.26
Consensus pattern (63 bp):
TTCGCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACACA
Found at i:35796078 original size:85 final size:85
Alignment explanation
Indices: 35795977--35796144 Score: 336
Period size: 85 Copynumber: 2.0 Consensus size: 85
35795967 ACACTTAGTG
35795977 CTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACACTTAATGGTCAGTATCAAA
1 CTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACACTTAATGGTCAGTATCAAA
35796042 TTCGCACACTTAGTGCATCC
66 TTCGCACACTTAGTGCATCC
35796062 CTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACACTTAATGGTCAGTATCAAA
1 CTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACACTTAATGGTCAGTATCAAA
35796127 TTCGCACACTTAGTGCAT
66 TTCGCACACTTAGTGCAT
35796145 GTGACAGCCC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 83 1.00
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.27
Consensus pattern (85 bp):
CTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTCGCACACTTAATGGTCAGTATCAAA
TTCGCACACTTAGTGCATCC
Found at i:35797006 original size:13 final size:13
Alignment explanation
Indices: 35796988--35797012 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35796978 TAATGGTATA
35796988 TTGAATCCATGAT
1 TTGAATCCATGAT
35797001 TTGAATCCATGA
1 TTGAATCCATGA
35797013 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:35798764 original size:96 final size:92
Alignment explanation
Indices: 35798704--35798928 Score: 274
Period size: 96 Copynumber: 2.4 Consensus size: 92
35798694 TTAGGATTCT
*
35798704 ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAG
1 ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAA
*
35798769 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGAATATATATGTGATAAGG-C--AT-GCCG
* * *
35798800 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAA
* * *
35798865 TG--TATATATGTGACAGGGCCGAGTGGCCA
66 TGAATATATATGTGATAAGG-C-A-T-GCCG
* *
35798894 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ACGTGATGAATGTGAAAGTGTATATATGTGATAAG
35798929 TCTCAAAGGG
Statistics
Matches: 119, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
93 1 0.01
94 53 0.45
96 65 0.55
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (92 bp):
ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAA
TGAATATATATGTGATAAGGCATGCCG
Found at i:35798801 original size:49 final size:47
Alignment explanation
Indices: 35798706--35798928 Score: 347
Period size: 47 Copynumber: 4.7 Consensus size: 47
35798696 AGGATTCTAC
*
35798706 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
35798753 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
35798802 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * * *
35798849 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
35798896 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
35798929 TCTCAAAGGG
Statistics
Matches: 163, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 117 0.72
49 46 0.28
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
Found at i:35799103 original size:37 final size:37
Alignment explanation
Indices: 35799050--35799125 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
35799040 AGCTCTAAAA
* * *
35799050 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
*
35799087 ACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
35799124 AC
1 AC
35799126 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
Found at i:35800742 original size:40 final size:40
Alignment explanation
Indices: 35800339--35800728 Score: 600
Period size: 40 Copynumber: 9.8 Consensus size: 40
35800329 GAGAATTGAG
35800339 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
35800379 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
35800419 AGTGATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
35800459 AGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
35800499 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCTTTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
35800539 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
35800579 AGTGATGTATCCGGGCTATGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
35800619 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
35800659 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
35800699 GGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAG
35800729 TAATCATGCT
Statistics
Matches: 323, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 323 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:35802721 original size:13 final size:13
Alignment explanation
Indices: 35802703--35802727 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35802693 TAATGGTATA
35802703 TTGAATCCATGAT
1 TTGAATCCATGAT
35802716 TTGAATCCATGA
1 TTGAATCCATGA
35802728 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:35804476 original size:96 final size:92
Alignment explanation
Indices: 35804416--35804640 Score: 283
Period size: 96 Copynumber: 2.4 Consensus size: 92
35804406 TTAGGATTCT
*
35804416 ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAA
*
35804481 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGAATATATATGTGATAAGG-C--AT-GCCG
* *
35804512 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAA
* * *
35804577 TG--TATATATGTGACAGGGCCGAGTGGCCA
66 TGAATATATATGTGATAAGG-C-A-T-GCCG
* *
35804606 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ACGTGATGAATGTGAAAGTGTATATATGTGATAAG
35804641 TCCCAAAGGG
Statistics
Matches: 120, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.01
94 53 0.44
96 66 0.55
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (92 bp):
ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAA
TGAATATATATGTGATAAGGCATGCCG
Found at i:35804508 original size:49 final size:47
Alignment explanation
Indices: 35804418--35804640 Score: 356
Period size: 47 Copynumber: 4.7 Consensus size: 47
35804408 AGGATTCTAC
35804418 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
35804465 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
35804514 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * * *
35804561 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
35804608 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
35804641 TCCCAAAGGG
Statistics
Matches: 164, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 117 0.71
49 47 0.29
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
Found at i:35804800 original size:37 final size:37
Alignment explanation
Indices: 35804759--35804837 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
35804749 CCGAGCTCTA
* *
35804759 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTTTGTCCGGGT
*
35804796 AAGACCCGATAACTTCGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTTTGTCCGGGT
35804833 AAGAC
1 AAGAC
35804838 TTCGTAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTTTGTCCGGGT
Found at i:35805528 original size:27 final size:27
Alignment explanation
Indices: 35805495--35805548 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
35805485 AATGATCTTT
35805495 ATTTCAAGAAAAAGTTCAAAATTTTAC
1 ATTTCAAGAAAAAGTTCAAAATTTTAC
35805522 ATTTCAAGAAAAAGTTCAAAATTTTAC
1 ATTTCAAGAAAAAGTTCAAAATTTTAC
35805549 TGTTCTGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.33
Consensus pattern (27 bp):
ATTTCAAGAAAAAGTTCAAAATTTTAC
Found at i:35813791 original size:40 final size:40
Alignment explanation
Indices: 35813741--35813846 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 40
35813731 GTCGGTATCA
* *
35813741 CACACTTAGTGCC-TTCTATAATGGAAGCTAT-GCCAACTCG
1 CACACTTAGTGCCATT-TATAATCGAAGCTATAGCAAACT-G
* **
35813781 CACACTTAGTGCCATTTATAGTCGAAGCTATATTAAACTG
1 CACACTTAGTGCCATTTATAATCGAAGCTATAGCAAACTG
* *
35813821 CACACTTAGTGCCAATTATAGTCGAA
1 CACACTTAGTGCCATTTATAATCGAA
35813847 TATCATTATA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
40 52 0.90
41 6 0.10
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (40 bp):
CACACTTAGTGCCATTTATAATCGAAGCTATAGCAAACTG
Found at i:35817139 original size:28 final size:28
Alignment explanation
Indices: 35817099--35817153 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
35817089 TCTCGGAGGT
35817099 TTCCAATCCAAAATAGCTAAAATTTTAA
1 TTCCAATCCAAAATAGCTAAAATTTTAA
* *
35817127 TTCCAATCCAAAATTGCTGAAATTTTA
1 TTCCAATCCAAAATAGCTAAAATTTTA
35817154 CTTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.42, C:0.18, G:0.05, T:0.35
Consensus pattern (28 bp):
TTCCAATCCAAAATAGCTAAAATTTTAA
Found at i:35821293 original size:49 final size:49
Alignment explanation
Indices: 35821224--35821611 Score: 594
Period size: 49 Copynumber: 8.1 Consensus size: 49
35821214 GAAATGATAG
35821224 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
35821273 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTTATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
35821322 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
35821369 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
35821416 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
35821465 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA--TGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
35821512 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
35821561 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
35821608 TAAG
1 TAAG
35821612 TCCCGAAGGG
Statistics
Matches: 314, Mismatches: 21, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
47 142 0.45
48 1 0.00
49 171 0.54
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:35821400 original size:96 final size:95
Alignment explanation
Indices: 35821224--35821611 Score: 566
Period size: 96 Copynumber: 4.0 Consensus size: 95
35821214 GAAATGATAG
35821224 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35821289 ATGTGATGAATGTGAAAGTGTATATTTATGTGA
64 ATGTGATGAATGTGAAAGTGTATA-TTATGTGA
*
35821322 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
35821387 GTGATGAATGTGAAAGTGTATA-TATGAGA
66 GTGATGAATGTGAAAGTGTATATTATGTGA
*
35821416 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATGTGATAAGGCCTAATGGCCG
* *
35821481 ATGTGATGAATGTGAAAGTGTAT-GTATATGA
64 ATGTGATGAATGTGAAAGTGTATATTATGTGA
* * * * * *
35821512 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAG--TGTATATATGTGATAAGGCCTAATGGCCG
* * *
35821577 ACGTGATGGATGTGAAAGTGTATA-AATGTGA
64 ATGTGATGAATGTGAAAGTGTATATTATGTGA
35821608 TAAG
1 TAAG
35821612 TCCCGAAGGG
Statistics
Matches: 269, Mismatches: 15, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
94 44 0.16
96 186 0.69
98 39 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATTATGTGA
Found at i:35821568 original size:41 final size:44
Alignment explanation
Indices: 35821235--35821569 Score: 210
Period size: 47 Copynumber: 7.1 Consensus size: 44
35821225 AAGGCCTAAT
* * *
35821235 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAA--GTATATATATATGAT-A-GAC-AAG
* * * *
35821284 GGCCGATGTGATGAATGTGAAAGTGTATATTTATGTGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAA--GTATATATATATGAT-A-GAC-AAG
* ** * *
35821333 GGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTATATATATATGAT-A-GAC-AAG
* * *
35821380 GGCCGATGTGATGAATGTGAAAGTGTATATATGA-GATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTATATATAT-ATGAT-A-GAC-AAG
* * * *
35821427 GGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAGGGCCTAAT
1 GGCCGATGTGATGAATGTGAAA--GTATATATATATGATA--GAC-AAG
* * * *
35821476 GGCCGATGTGATGAATGTGAAAGTGTATGTATATGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTATATATATATGAT-A-GAC-AAG
35821523 GGCCGATGTGATGAATGTGAAAGTATATATATATG-T-GAC-AG
1 GGCCGATGTGATGAATGTGAAAGTATATATATATGATAGACAAG
35821564 GGCCGA
1 GGCCGA
35821570 GTGGCCAACG
Statistics
Matches: 263, Mismatches: 17, Indels: 20
0.88 0.06 0.07
Matches are distributed among these distances:
41 7 0.03
43 2 0.01
46 1 0.00
47 140 0.53
48 2 0.01
49 111 0.42
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (44 bp):
GGCCGATGTGATGAATGTGAAAGTATATATATATGATAGACAAG
Found at i:35821606 original size:143 final size:142
Alignment explanation
Indices: 35821224--35821611 Score: 589
Period size: 143 Copynumber: 2.7 Consensus size: 142
35821214 GAAATGATAG
35821224 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-TATATATATGTGATAAGGCCTAATGGCCG
35821289 ATGTGATGAATGTGAAAGTGTATATTTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65 ATGTGATGAATGTGAAAGTGTATA--TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
35821354 AGTGTATATACGTGA
128 AGTGTATATACATGA
* *
35821369 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-TGTATATATGAGATAAGGCCTAATGGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTATATATATGTGATAAGGCCTAATGGCCGA
*
35821433 TGTGATGAATGTGAAAGTGTATGTATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAA
66 TGTGATGAATGTGAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
35821498 GTGTATGTATATGA
129 GTGTATATACATGA
* * * * *
35821512 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-TATATATATGTGATAAGGCCTAATGGCCG
* * *
35821577 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
65 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
35821612 TCCCGAAGGG
Statistics
Matches: 222, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
143 144 0.65
145 78 0.35
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (142 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTATATATATGTGATAAGGCCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
GTATATACATGA
Found at i:35821786 original size:37 final size:37
Alignment explanation
Indices: 35821730--35821808 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35821720 CCGAGCTCTA
* * *
35821730 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
35821767 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
35821804 AAGAC
1 AAGAC
35821809 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:35824174 original size:39 final size:40
Alignment explanation
Indices: 35824073--35824216 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 40
35824063 TCGAATGATG
* *
35824073 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
35824112 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
35824153 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
35824192 TCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAG-GCATT
35824217 CATGCTAGTG
Statistics
Matches: 90, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
39 35 0.39
40 37 0.41
41 17 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:35824235 original size:40 final size:40
Alignment explanation
Indices: 35824191--35824347 Score: 242
Period size: 40 Copynumber: 3.9 Consensus size: 40
35824181 GAGTTACTAA
35824191 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
35824231 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
35824271 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
35824311 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
35824348 CGTGTATTCG
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:35827990 original size:49 final size:49
Alignment explanation
Indices: 35827921--35828354 Score: 656
Period size: 49 Copynumber: 9.1 Consensus size: 49
35827911 GAAATGATAG
35827921 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
35827970 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA---TATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
35828016 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
35828063 TAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
35828110 TACGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
35828159 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
35828208 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
35828255 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
35828304 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
35828351 TAAG
1 TAAG
35828355 TCCCGAAGGG
Statistics
Matches: 356, Mismatches: 22, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
46 46 0.13
47 141 0.40
48 1 0.00
49 168 0.47
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:35828182 original size:96 final size:96
Alignment explanation
Indices: 35827924--35828354 Score: 660
Period size: 96 Copynumber: 4.5 Consensus size: 96
35827914 ATGATAGTAA
35827924 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
*
35827989 TGATGAATGTGAAA-TATATATATGTGATAA
66 TGATGAATGTGAAAGTATATATATGTGATAG
* *
35828019 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGTCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
* * *
35828082 TGATGAATGTGAAAGTGTATATATGAGATAC
66 TGATGAATGTGAAAGTATATATATGTGATAG
*
35828113 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
35828178 TGATGAATGTGAAAGTGTATATATATGTGATAG
66 TGATGAATGTGAAA--GTATATATATGTGATAG
35828211 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
*
35828274 TGATGAATGTGAAAGTATATGTATATGTGACAG
66 TGATGAATGTGAAAGTATA--TATATGTGATAG
* * * * *
35828307 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
35828355 TCCCGAAGGG
Statistics
Matches: 309, Mismatches: 18, Indels: 17
0.90 0.05 0.05
Matches are distributed among these distances:
93 42 0.14
94 51 0.17
95 33 0.11
96 133 0.43
97 1 0.00
98 49 0.16
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTATATATATGTGATAG
Found at i:35828523 original size:37 final size:37
Alignment explanation
Indices: 35828473--35828551 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35828463 CCGAGCTCTA
* * *
35828473 AAGACCCGATAACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
*
35828510 AAGACCCGATAACTTCGTATGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
35828547 AAGAC
1 AAGAC
35828552 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
Found at i:35828755 original size:37 final size:37
Alignment explanation
Indices: 35828714--35828792 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
35828704 CCGAGCTCTA
* * * *
35828714 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCAGATAACTACGTGTGGAGATTATGTCCGGGT
*
35828751 AAGACCAGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCAGATAACTACGTGTGGAGATTATGTCCGGGT
35828788 AAGAC
1 AAGAC
35828793 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCAGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:35828794 original size:241 final size:241
Alignment explanation
Indices: 35828371--35828852 Score: 892
Period size: 241 Copynumber: 2.0 Consensus size: 241
35828361 AGGGCATTTG
*
35828371 TGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTAATTAATG
1 TGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTAATTAAAG
35828436 TCCGTAAGCTTCGTGCTCGTACTATATCCGAGCTCTAAAGACCCGATAACTACGTGTGGGGATTT
66 TCCGTAAGCTTCGTGCTCGTACTATATCCGAGCTCTAAAGACCCGATAACTACGTGTGGGGATTT
*
35828501 TGTCCGGGTAAGACCCGATAACTTCGTATGGAGATTATGTCCGGGTAAGACTTCGTAATAAGAAT
131 TGTCCGGGTAAGACCAGATAACTTCGTATGGAGATTATGTCCGGGTAAGACTTCGTAATAAGAAT
35828566 TGCTTATAAATATATTCAATGCGAAAGGTTAAACAGGTATGTACTC
196 TGCTTATAAATATATTCAATGCGAAAGGTTAAACAGGTATGTACTC
** *
35828612 TGTCAGTACTATATCCGGGTTAAAATGCCGCAGGCTTTATGCGAGAATATTATCACTGATTAAAG
1 TGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTAATTAAAG
*
35828677 TCCGTAAGCTTCGTGCTCGTACTATATCCGAGCTCTAAAGACCCGATGACTACGTGTGGGGATTT
66 TCCGTAAGCTTCGTGCTCGTACTATATCCGAGCTCTAAAGACCCGATAACTACGTGTGGGGATTT
*
35828742 TGTCCGGGTAAGACCAGATAACTTCGTGTGGAGATTATGTCCGGGTAAGACTTCGTAATAAGAAT
131 TGTCCGGGTAAGACCAGATAACTTCGTATGGAGATTATGTCCGGGTAAGACTTCGTAATAAGAAT
*
35828807 TGCTTATAAATATATTCAATGTGAAAGGTTAAACAGGTATGTACTC
196 TGCTTATAAATATATTCAATGCGAAAGGTTAAACAGGTATGTACTC
35828853 CAAGTTTATA
Statistics
Matches: 233, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
241 233 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (241 bp):
TGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTAATTAAAG
TCCGTAAGCTTCGTGCTCGTACTATATCCGAGCTCTAAAGACCCGATAACTACGTGTGGGGATTT
TGTCCGGGTAAGACCAGATAACTTCGTATGGAGATTATGTCCGGGTAAGACTTCGTAATAAGAAT
TGCTTATAAATATATTCAATGCGAAAGGTTAAACAGGTATGTACTC
Found at i:35834371 original size:21 final size:21
Alignment explanation
Indices: 35834326--35834365 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
35834316 AAATTCATCC
35834326 TAAATTTAAAATTTTGAATCT
1 TAAATTTAAAATTTTGAATCT
35834347 TAAATTTAAAATTTTGAAT
1 TAAATTTAAAATTTTGAAT
35834366 TATAAACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (21 bp):
TAAATTTAAAATTTTGAATCT
Found at i:35844804 original size:29 final size:29
Alignment explanation
Indices: 35844733--35844839 Score: 128
Period size: 29 Copynumber: 3.8 Consensus size: 29
35844723 CTCACATACT
* * *
35844733 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
35844761 TGCATATGGCCCATTAGGCCCAAATTACC
1 TGTATATGGCCCATTAGGCCCAAATCACA
35844790 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
35844819 TTTATATGGCCCGTT-GGCCCA
1 TGTATATGGCCCATTAGGCCCA
35844840 GTCATATTCA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
28 24 0.36
29 43 0.64
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:35845105 original size:16 final size:16
Alignment explanation
Indices: 35845068--35845099 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
35845058 AAACTTTCAG
35845068 CTTTTCGGCATTTCGA
1 CTTTTCGGCATTTCGA
35845084 CTTTTCGGCATTTCGA
1 CTTTTCGGCATTTCGA
35845100 TATTTCAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (16 bp):
CTTTTCGGCATTTCGA
Found at i:35850375 original size:47 final size:47
Alignment explanation
Indices: 35850324--35850693 Score: 553
Period size: 47 Copynumber: 7.7 Consensus size: 47
35850314 TTAGGATTCT
* *
35850324 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
35850371 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
35850418 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35850467 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
35850516 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35850563 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * * * * *
35850612 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGACCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
35850659 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
35850694 TCCCGAAGGG
Statistics
Matches: 301, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 160 0.53
49 140 0.47
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:35850454 original size:96 final size:95
Alignment explanation
Indices: 35850324--35850693 Score: 557
Period size: 96 Copynumber: 3.9 Consensus size: 95
35850314 TTAGGATTCT
* *
35850324 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
35850388 GTG-TATATATGTGATAAGGCCTAATGGCCG
65 GTGATATATATGTGATAAGGCCTAATGGCCG
*
35850418 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
35850483 AGTGTATATATATGTGATAAGGCCTAATGGCCG
64 AGTG-ATATATATGTGATAAGGCCTAATGGCCG
*
35850516 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
35850581 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG-ATATATATGTGATAAGGCCTAATGGCCG
* * * * * * * *
35850612 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGACCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
35850677 TG-TATAAATGTGATAAG
66 TGATATATATGTGATAAG
35850694 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 15, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
93 1 0.00
94 31 0.12
96 177 0.69
98 47 0.18
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGATATATATGTGATAAGGCCTAATGGCCG
Found at i:35850463 original size:49 final size:49
Alignment explanation
Indices: 35850345--35850693 Score: 552
Period size: 49 Copynumber: 7.3 Consensus size: 49
35850335 GTGAACATGC
35850345 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
35850392 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
35850441 ATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
35850490 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
35850537 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
35850586 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * * *
35850633 ATATATGTGACAGGGCCGAGTGACCAACGTGATGGATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
35850682 A-A-ATGTGATAAG
1 ATATATGTGATAAG
35850694 TCCCGAAGGG
Statistics
Matches: 282, Mismatches: 14, Indels: 12
0.92 0.05 0.04
Matches are distributed among these distances:
47 139 0.49
48 1 0.00
49 142 0.50
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:35850515 original size:145 final size:143
Alignment explanation
Indices: 35850324--35850693 Score: 589
Period size: 145 Copynumber: 2.6 Consensus size: 143
35850314 TTAGGATTCT
* *
35850324 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
35850388 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
35850453 AGGCCCAATGGCCG
130 AGGCCCAATGGCCG
35850467 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
35850532 AGTGTACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
*
35850597 AAGGCCTAATGGCCG
129 AAGGCCCAATGGCCG
* * * * * * * *
35850612 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGACCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
35850677 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
35850694 TCCCGAAGGG
Statistics
Matches: 210, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
142 1 0.00
143 69 0.33
145 140 0.67
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCCAATGGCCG
Found at i:35850522 original size:22 final size:22
Alignment explanation
Indices: 35850494--35850569 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
35850484 GTGTATATAT
35850494 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** * **
35850516 ATGTGATGAATGTGAAAGTGTACAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
35850541 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
35850563 ATGTGAT
1 ATGTGAT
35850570 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:35850868 original size:37 final size:37
Alignment explanation
Indices: 35850812--35850890 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35850802 CCGAGCTCTA
* * *
35850812 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
35850849 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
35850886 AAGAC
1 AAGAC
35850891 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:35852332 original size:40 final size:40
Alignment explanation
Indices: 35852089--35852320 Score: 347
Period size: 40 Copynumber: 5.8 Consensus size: 40
35852079 GAGAATTGAG
35852089 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
35852129 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
35852169 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
35852209 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** * **
35852249 AGAGATATATTTGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
35852289 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
35852321 ATCATGCTGG
Statistics
Matches: 169, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 169 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:35856364 original size:49 final size:47
Alignment explanation
Indices: 35856178--35856830 Score: 1053
Period size: 47 Copynumber: 13.7 Consensus size: 47
35856168 TTAGGATTCT
* *
35856178 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
35856225 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35856272 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
35856319 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
35856368 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
35856417 ATGTGATGACTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35856464 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35856513 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35856562 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35856609 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC-AATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35856657 ATGTGATG-ATGTGAAAGTGTATATATGTGATAAGGCC-AATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35856702 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
35856749 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
35856796 ACGTGATGGATGTGAAATTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
35856831 TCCCGAAGGG
Statistics
Matches: 578, Mismatches: 19, Indels: 18
0.94 0.03 0.03
Matches are distributed among these distances:
45 34 0.06
46 30 0.05
47 292 0.51
48 16 0.03
49 206 0.36
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:35856448 original size:145 final size:145
Alignment explanation
Indices: 35856199--35856830 Score: 1079
Period size: 145 Copynumber: 4.4 Consensus size: 145
35856189 GTGAACATGC
*
35856199 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
1 ATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
35856262 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35856327 AATGTGAAAGTGTAT
131 AATGTGAAAGTGTAT
35856342 ATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
* *
35856407 CTAACGGCCGATGTGATGACTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35856472 AATGTGAAAGTGTAT
131 AATGTGAAAGTGTAT
*
35856487 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
35856552 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35856617 AATGTGAAAGTGTAT
131 AATGTGAAAGTGTAT
35856632 ATATATGTGATAAGG-CCAATGGCCGATGTGATG-ATGTGAAAGTG--TATATATGTGATAAGGC
1 ATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
35856693 C-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35856757 AATGTGAAAGTG--T
131 AATGTGAAAGTGTAT
* * * * * * * *
35856770 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAATTGTATA-A-ATGTGATAAG
1 ATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
35856831 TCCCGAAGGG
Statistics
Matches: 469, Mismatches: 14, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
138 14 0.03
139 14 0.03
140 95 0.20
141 19 0.04
142 2 0.00
143 56 0.12
144 17 0.04
145 252 0.54
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (145 bp):
ATATATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTAT
Found at i:35857005 original size:37 final size:37
Alignment explanation
Indices: 35856949--35857027 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35856939 CCGAGCTCTA
* * *
35856949 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
35856986 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
35857023 AAGAC
1 AAGAC
35857028 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.