Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 113 of 255
Found at i:35859535 original size:60 final size:60
Alignment explanation
Indices: 35859469--35859588 Score: 215
Period size: 60 Copynumber: 2.0 Consensus size: 60
35859459 AATCATTAAT
35859469 ATTGAGAATCAACCTCACATGTTTTCTCTTGTTCTT-GTGTGCAGTGGAAGGGGGAAAGTC
1 ATTGAGAATCAACCTCACATGTTTTCTCTTGTT-TTCGTGTGCAGTGGAAGGGGGAAAGTC
*
35859529 ATTGAGAATCAACCTCACATGTTTTCTCTTGTTTTCTTGTGCAGTGGAAGGGGGAAAGTC
1 ATTGAGAATCAACCTCACATGTTTTCTCTTGTTTTCGTGTGCAGTGGAAGGGGGAAAGTC
35859589 CTTGCTTTCG
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
59 2 0.03
60 56 0.97
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (60 bp):
ATTGAGAATCAACCTCACATGTTTTCTCTTGTTTTCGTGTGCAGTGGAAGGGGGAAAGTC
Found at i:35860887 original size:19 final size:19
Alignment explanation
Indices: 35860863--35860900 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
35860853 CATCCAAACA
35860863 CTAGAAAAGTAAATCATTT
1 CTAGAAAAGTAAATCATTT
35860882 CTAGAAAAGTAAATCATTT
1 CTAGAAAAGTAAATCATTT
35860901 TCCAGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (19 bp):
CTAGAAAAGTAAATCATTT
Found at i:35860907 original size:20 final size:19
Alignment explanation
Indices: 35860865--35860908 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
35860855 TCCAAACACT
*
35860865 AGAAAAGTAAATCATTTCT
1 AGAAAAGTAAATCATTTCC
35860884 AGAAAAGTAAATCATTTTCC
1 AGAAAAGTAAATCA-TTTCC
35860904 AGAAA
1 AGAAA
35860909 TTATTTTCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.27
Consensus pattern (19 bp):
AGAAAAGTAAATCATTTCC
Found at i:35871799 original size:44 final size:44
Alignment explanation
Indices: 35871749--35871836 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
35871739 TGAAACATGA
35871749 ATGTCTTGGTGTTGTTTATGCAAATGATGTTTTATGTGAGATTG
1 ATGTCTTGGTGTTGTTTATGCAAATGATGTTTTATGTGAGATTG
35871793 ATGTCTTGGTGTTGTTTATGCAAATGATGTTTTATGTGAGATTG
1 ATGTCTTGGTGTTGTTTATGCAAATGATGTTTTATGTGAGATTG
35871837 TGTGATTATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.20, C:0.05, G:0.27, T:0.48
Consensus pattern (44 bp):
ATGTCTTGGTGTTGTTTATGCAAATGATGTTTTATGTGAGATTG
Found at i:35878481 original size:79 final size:81
Alignment explanation
Indices: 35878341--35878525 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
35878331 TTGAATGATG
* *
35878341 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
35878405 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
35878420 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
35878482 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
35878500 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35878526 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:35878539 original size:40 final size:40
Alignment explanation
Indices: 35878342--35878525 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
35878332 TGAATGATGT
* * * *
35878342 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
35878382 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
35878422 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
35878460 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
35878501 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
35878526 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:35878547 original size:79 final size:79
Alignment explanation
Indices: 35878394--35878558 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
35878384 GGACTAAGAT
* * **
35878394 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
35878459 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
35878473 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
35878536 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
35878552 CCGAAGG
1 CCGAAGG
35878559 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:35886462 original size:39 final size:40
Alignment explanation
Indices: 35886312--35886494 Score: 207
Period size: 39 Copynumber: 4.7 Consensus size: 40
35886302 TTGAATGATG
* * * *
35886312 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
35886352 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
35886391 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
35886430 TCCGGGTTAAGTCCCGAAGGCA-ATGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
35886470 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35886495 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 23 0.19
39 54 0.45
40 36 0.30
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35886525 original size:78 final size:78
Alignment explanation
Indices: 35886364--35886527 Score: 190
Period size: 78 Copynumber: 2.1 Consensus size: 78
35886354 CGGACTAAGA
* ** **
35886364 TCCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGAAGGCATATGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
35886429 ATCCGGGTTAAGT
66 ATCCGGGTTAAAT
* * *
35886442 CCCGAAGGCA-ATGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 TCCGAAGGCATATGTGCGAGATACTA-AACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
35886505 TATATCC-GGTTAAAT
63 TAAATCCGGGTTAAAT
35886520 TCCGAAGG
1 TCCGAAGG
35886528 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
77 13 0.18
78 34 0.47
79 25 0.35
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGAAGGCATATGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAAT
Found at i:35901407 original size:47 final size:47
Alignment explanation
Indices: 35901333--35901805 Score: 741
Period size: 47 Copynumber: 10.1 Consensus size: 47
35901323 GAAATGATAG
*
35901333 TAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
35901380 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
35901427 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
35901474 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
35901521 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
35901568 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
35901615 TAAGGCCCAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
35901662 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
35901709 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
35901755 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
35901802 TAAG
1 TAAG
35901806 TCCCGAAGGG
Statistics
Matches: 397, Mismatches: 28, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
46 40 0.10
47 357 0.90
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:35927283 original size:29 final size:29
Alignment explanation
Indices: 35927245--35927322 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
35927235 TGGTCGAAAG
* *
35927245 CATCCATTTTCGTATTCGATGGTCGTCAC
1 CATCCCTTTTCATATTCGATGGTCGTCAC
*
35927274 CGTCCCTTTTCATAGTT-GATGGTCGTCAC
1 CATCCCTTTTCATA-TTCGATGGTCGTCAC
*
35927303 CATCCCTTTTCATAATCGAT
1 CATCCCTTTTCATATTCGAT
35927323 AGCTGAAACT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 1 0.02
29 39 0.93
30 2 0.05
ACGTcount: A:0.18, C:0.28, G:0.15, T:0.38
Consensus pattern (29 bp):
CATCCCTTTTCATATTCGATGGTCGTCAC
Found at i:35927336 original size:29 final size:30
Alignment explanation
Indices: 35927304--35927432 Score: 133
Period size: 29 Copynumber: 4.4 Consensus size: 30
35927294 GGTCGTCACC
35927304 ATCCCTTTTCATAATCGATAGCTGAAA-CT
1 ATCCCTTTTCATAATCGATAGCTGAAAGCT
* * *
35927333 ATCCCTTTTTCATATTCGATAAC-CAAAGCT
1 ATCCC-TTTTCATAATCGATAGCTGAAAGCT
* * *
35927363 ATTCCTTTTCATATTCGATAGCT-AAAGTT
1 ATCCCTTTTCATAATCGATAGCTGAAAGCT
*
35927392 ATCCCTTTCCA-AATTCGATAGCTG-AAGCT
1 ATCCCTTTTCATAA-TCGATAGCTGAAAGCT
*
35927421 ATCCCCTTTCAT
1 ATCCCTTTTCAT
35927433 TATTTAAGGG
Statistics
Matches: 82, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
28 1 0.01
29 60 0.73
30 21 0.26
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAATCGATAGCTGAAAGCT
Found at i:35927429 original size:59 final size:59
Alignment explanation
Indices: 35927304--35927432 Score: 154
Period size: 58 Copynumber: 2.2 Consensus size: 59
35927294 GGTCGTCACC
* *
35927304 ATCCCTTTTCATAATCGATAGCTGAAACTATCCCTTTTTCATATTCGATAACCAAAGCT
1 ATCCCTTTTCATAATCGATAGCTGAAACTATCCCTTTTCCAAATTCGATAACCAAAGCT
* * * * **
35927363 ATTCCTTTTCATATTCGATAGCT-AAAGTTATCCC-TTTCCAAATTCGATAGCTGAAGCT
1 ATCCCTTTTCATAATCGATAGCTGAAA-CTATCCCTTTTCCAAATTCGATAACCAAAGCT
*
35927421 ATCCCCTTTCAT
1 ATCCCTTTTCAT
35927433 TATTTAAGGG
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
58 32 0.54
59 27 0.46
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (59 bp):
ATCCCTTTTCATAATCGATAGCTGAAACTATCCCTTTTCCAAATTCGATAACCAAAGCT
Found at i:35932068 original size:40 final size:40
Alignment explanation
Indices: 35932006--35932421 Score: 619
Period size: 40 Copynumber: 10.4 Consensus size: 40
35931996 AAACCAAGTA
* * *
35932006 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
35932045 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
35932085 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
35932125 CCTTTGGGACTTAGCCCAGA-ATTAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
35932165 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
35932205 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
35932245 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
35932285 CCTTCAGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
35932325 CCTTCGGGACTTAGCCCGGAGT-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATG
* *
35932365 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
35932405 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
35932422 CGTTATCATC
Statistics
Matches: 345, Mismatches: 23, Indels: 17
0.90 0.06 0.04
Matches are distributed among these distances:
39 15 0.04
40 327 0.95
41 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:35940735 original size:28 final size:28
Alignment explanation
Indices: 35940672--35940879 Score: 350
Period size: 28 Copynumber: 7.5 Consensus size: 28
35940662 ATATTAAGTC
* * *
35940672 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
35940699 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
35940727 CGCACACTTAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
35940754 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
35940782 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
35940810 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
35940838 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
35940865 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35940880 GCACAATTTA
Statistics
Matches: 175, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
27 66 0.38
28 109 0.62
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:35940756 original size:55 final size:55
Alignment explanation
Indices: 35940672--35940904 Score: 358
Period size: 55 Copynumber: 4.2 Consensus size: 55
35940662 ATATTAAGTC
* * *
35940672 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
35940727 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
35940782 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
35940838 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
35940894 CGCACACTTAG
1 CGCACACTTAG
35940905 CGCCAATCTC
Statistics
Matches: 166, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
55 95 0.57
56 71 0.43
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:35940868 original size:111 final size:110
Alignment explanation
Indices: 35940672--35940879 Score: 362
Period size: 111 Copynumber: 1.9 Consensus size: 110
35940662 ATATTAAGTC
*
35940672 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
35940737 GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
66 GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
* * *
35940782 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTCAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
*
35940847 AGTGCTACATAGTCAATTCGCACACTTAGTGCT
65 AGTGCTACATAGTCAACTCGCACACTTAGTGCT
35940880 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
110 20 0.22
111 72 0.78
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (110 bp):
CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:35948791 original size:32 final size:28
Alignment explanation
Indices: 35948720--35948903 Score: 250
Period size: 27 Copynumber: 6.5 Consensus size: 28
35948710 ATATTAAGTC
* * *
35948720 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
35948747 CGCACACTTAGTGCTACATAATCAAAC-
1 CGCACACTTAGTGCTACATAGTCAAACT
35948774 CGCACACTACACTTAGTGCTACATAGTC-AACT
1 CG----C-ACACTTAGTGCTACATAGTCAAACT
35948806 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
35948834 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
35948862 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
35948889 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35948904 GCACAATTTA
Statistics
Matches: 145, Mismatches: 4, Indels: 16
0.88 0.02 0.10
Matches are distributed among these distances:
27 61 0.42
28 59 0.41
31 4 0.03
32 21 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:35948806 original size:59 final size:59
Alignment explanation
Indices: 35948723--35948896 Score: 241
Period size: 59 Copynumber: 3.0 Consensus size: 59
35948713 TTAAGTCCGC
* * * *
35948723 ACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACCGCACACT
1 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACCGCACACT
35948782 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCG----C-
1 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAAC-CGCACACT
**
35948837 ACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATTCGCACACT
1 ACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACCGCACACT
35948897 TAGTGCTGCA
Statistics
Matches: 102, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
55 22 0.22
56 30 0.29
59 48 0.47
60 2 0.02
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (59 bp):
ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACCGCACACT
Found at i:35948922 original size:56 final size:56
Alignment explanation
Indices: 35948720--35948928 Score: 230
Period size: 59 Copynumber: 3.7 Consensus size: 56
35948710 ATATTAAGTC
* * * * *
35948720 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACATAATCAAAC-
1 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAGTCAAACT
*
35948774 CGCACACTACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACT
1 CG----C-ACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAGTCAAACT
* *
35948834 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAGTCAAACT
* *
35948889 CGCACACTTAGTGCTGCACA-ATTTAAACCCGCACACTTAG
1 CGCACACTTAGTGCT--ACATAGTCAAACCCGCACACTTAG
35948929 CGCCAATCTC
Statistics
Matches: 138, Mismatches: 8, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
54 2 0.01
55 38 0.28
56 45 0.33
57 3 0.02
58 1 0.01
59 47 0.34
60 2 0.01
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (56 bp):
CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAGTCAAACT
Found at i:35951600 original size:40 final size:40
Alignment explanation
Indices: 35951538--35951913 Score: 548
Period size: 40 Copynumber: 9.4 Consensus size: 40
35951528 AAACCAAGTA
* * *
35951538 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
35951577 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
35951617 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
35951657 CCTTCGGGACTTAGCCCGGA-ATTAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
35951697 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
35951737 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
35951777 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
35951817 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCATAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
35951857 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
35951897 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
35951914 CGTTATCATC
Statistics
Matches: 309, Mismatches: 21, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
39 16 0.05
40 291 0.94
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:35954623 original size:93 final size:93
Alignment explanation
Indices: 35954511--35954682 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
35954501 CGCCCATAAG
* *
35954511 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
35954576 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
35954604 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
35954669 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
35954683 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:35954679 original size:46 final size:46
Alignment explanation
Indices: 35954504--35954679 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
35954494 TGTAACCCGC
* *
35954504 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
35954550 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
35954600 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
35954643 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
35954680 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:35966464 original size:46 final size:46
Alignment explanation
Indices: 35966339--35966512 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
35966329 TGTAACCCGC
* * *
35966339 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
35966389 CTC-T---CGAACTCGGACTCAACTCAAGGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
35966432 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
35966478 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
35966513 AATGCCCAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 71 0.64
47 27 0.24
50 2 0.02
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:35968470 original size:15 final size:15
Alignment explanation
Indices: 35968441--35968490 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
35968431 CAAAGATAAC
*
35968441 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
35968455 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
35968470 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
35968485 AAGAAA
1 AAGAAA
35968491 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:35968499 original size:15 final size:15
Alignment explanation
Indices: 35968452--35968499 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
35968442 AGAAAACCGA
35968452 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
35968466 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
35968482 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
35968497 ATA
1 ATA
35968500 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:35971580 original size:46 final size:46
Alignment explanation
Indices: 35971437--35971580 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
35971427 CCCGCCCATA
*
35971437 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * * *
35971486 --CGAACTCGGACTCAAGTCAACGAGTTCGGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* * *
35971529 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
35971576 AGTGA
1 AGTGA
35971581 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 32 0.43
47 28 0.37
48 6 0.08
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:35976404 original size:29 final size:29
Alignment explanation
Indices: 35976362--35976620 Score: 236
Period size: 29 Copynumber: 8.9 Consensus size: 29
35976352 ATCGATGCCG
*
35976362 ATCAAATATGAAAATGGATGGTTTCGACC
1 ATCAAATATGAAAAGGGATGGTTTCGACC
* * **
35976391 ATCAAATATGAAAATGGATAGTGACGACC
1 ATCAAATATGAAAAGGGATGGTTTCGACC
* * ** *
35976420 ATCAAATCTGCAAATAGATGGTTTTGACC
1 ATCAAATATGAAAAGGGATGGTTTCGACC
* *
35976449 ATCAAATATGAAAAGGGATGGTAAT-GATC
1 ATCAAATATGAAAAGGGATGGT-TTCGACC
* * * **
35976478 ATCGAATATGAAAAAGGATAGTGACGACC
1 ATCAAATATGAAAAGGGATGGTTTCGACC
* *
35976507 ATCAAATATGAAAAGGGAAGGTTTTGACC
1 ATCAAATATGAAAAGGGATGGTTTCGACC
* * *
35976536 ATCAAATATGTAAAGGGAAGGTGAT-GACC
1 ATCAAATATGAAAAGGGATGGT-TTCGACC
**
35976565 ATCAAATATGAAAAGGGATGGTGAC-ACCC
1 ATCAAATATGAAAAGGGATGGTTTCGA-CC
* *
35976594 ATCGAATATGAAAAGGGATGATTTCGA
1 ATCAAATATGAAAAGGGATGGTTTCGA
35976621 TCGCAGTTTA
Statistics
Matches: 185, Mismatches: 39, Indels: 11
0.79 0.17 0.05
Matches are distributed among these distances:
28 1 0.01
29 181 0.98
30 3 0.02
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.23
Consensus pattern (29 bp):
ATCAAATATGAAAAGGGATGGTTTCGACC
Found at i:35976508 original size:87 final size:86
Alignment explanation
Indices: 35976362--35976608 Score: 316
Period size: 87 Copynumber: 2.8 Consensus size: 86
35976352 ATCGATGCCG
* * *
35976362 ATCAAATATGAAAATGGATGGTTTCGACCATCAAATATGAAAATGGATAGTGACGACCATCAAAT
1 ATCAAATATGAAAAGGGATGGTAT-GACCATCAAATATGAAAAAGGATAGTGACGACCATCAAAT
* * * *
35976427 CTGCAAATAGATGGTTTTGACC
65 ATGAAAAGAGAAGGTTTTGACC
* *
35976449 ATCAAATATGAAAAGGGATGGTAATGATCATCGAATATGAAAAAGGATAGTGACGACCATCAAAT
1 ATCAAATATGAAAAGGGATGGT-ATGACCATCAAATATGAAAAAGGATAGTGACGACCATCAAAT
*
35976514 ATGAAAAGGGAAGGTTTTGACC
65 ATGAAAAGAGAAGGTTTTGACC
* * * * *
35976536 ATCAAATATGTAAAGGGAAGGTGATGACCATCAAATATGAAAAGGGATGGTGAC-ACCCATCGAA
1 ATCAAATATGAAAAGGGATGGT-ATGACCATCAAATATGAAAAAGGATAGTGACGA-CCATCAAA
35976600 TATGAAAAG
64 TATGAAAAG
35976609 GGATGATTTC
Statistics
Matches: 140, Mismatches: 18, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
86 1 0.01
87 138 0.99
88 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.23
Consensus pattern (86 bp):
ATCAAATATGAAAAGGGATGGTATGACCATCAAATATGAAAAAGGATAGTGACGACCATCAAATA
TGAAAAGAGAAGGTTTTGACC
Found at i:35979253 original size:15 final size:15
Alignment explanation
Indices: 35979233--35979262 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
35979223 ACTTATTTTA
*
35979233 CATCTTATGAAAAAT
1 CATCTTATCAAAAAT
35979248 CATCTTATCAAAAAT
1 CATCTTATCAAAAAT
35979263 TTCCTTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (15 bp):
CATCTTATCAAAAAT
Found at i:35986154 original size:15 final size:15
Alignment explanation
Indices: 35986122--35986150 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
35986112 ATTTTATGTG
35986122 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
35986137 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
35986151 ATTTTCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:35988049 original size:13 final size:13
Alignment explanation
Indices: 35988031--35988055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35988021 GGTTTGTTTA
35988031 TTAAACTAATTAT
1 TTAAACTAATTAT
35988044 TTAAACTAATTA
1 TTAAACTAATTA
35988056 ACTGATTCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:35996398 original size:13 final size:13
Alignment explanation
Indices: 35996380--35996404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35996370 GGTTTGTTTA
35996380 TTAAACTAATTAT
1 TTAAACTAATTAT
35996393 TTAAACTAATTA
1 TTAAACTAATTA
35996405 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:35996854 original size:14 final size:14
Alignment explanation
Indices: 35996835--35996861 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
35996825 TAACACAAGC
35996835 ATTAAGAACAAATA
1 ATTAAGAACAAATA
35996849 ATTAAGAACAAAT
1 ATTAAGAACAAAT
35996862 CAAGTATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (14 bp):
ATTAAGAACAAATA
Found at i:36000943 original size:178 final size:179
Alignment explanation
Indices: 36000689--36001013 Score: 501
Period size: 178 Copynumber: 1.8 Consensus size: 179
36000679 TAATTTTATA
* * * * * * *
36000689 AGAAACTAGACTTATATATATTCTTACCATAAAATTTTTAGAATTTTTGGTTTATCCAATTAGTA
1 AGAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTAGTTTAGCCAATCAATA
* * * *
36000754 CAGTTTATTCATTAAAGATACCCCTATTTCACTATTCGACAATTCCAACCTCTCTTCACTAAAAA
66 CAATTTATTCATTAAAGATACCCATATTTCACTATCCGACAATTCCAACATCTCTTCACTAAAAA
*
36000819 TTATTTATTTCATGGTATGGGACTCCAAATTGAGAACCAATAATTTCCC
131 TTATTTATCTCATGGTATGGGACTCCAAATTGAGAACCAATAATTTCCC
36000868 AGAAACTAGACTCACATA-AGTTCTTACCAT-AAATTTTCAGAATTTTTAGTTTAGCCAATCAAT
1 AGAAACTAGACTCACATATA-TTCTTACCATAAAATTTTCAGAATTTTTAGTTTAGCCAATCAAT
* *
36000931 ACAATTTATTCATTAAAGATACCCATATTTCACTATCCGACAGTTCCGACATCTCTTCACTAAAA
65 ACAATTTATTCATTAAAGATACCCATATTTCACTATCCGACAATTCCAACATCTCTTCACTAAAA
36000996 ATTATTTATCTCATGGTA
130 ATTATTTATCTCATGGTA
36001014 CTGCTCTCGG
Statistics
Matches: 131, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
178 105 0.80
179 26 0.20
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.37
Consensus pattern (179 bp):
AGAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTAGTTTAGCCAATCAATA
CAATTTATTCATTAAAGATACCCATATTTCACTATCCGACAATTCCAACATCTCTTCACTAAAAA
TTATTTATCTCATGGTATGGGACTCCAAATTGAGAACCAATAATTTCCC
Found at i:36001362 original size:16 final size:16
Alignment explanation
Indices: 36001343--36001374 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36001333 AATTGTTTTA
36001343 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
36001359 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
36001375 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:36001639 original size:50 final size:50
Alignment explanation
Indices: 36001574--36001917 Score: 377
Period size: 50 Copynumber: 6.8 Consensus size: 50
36001564 ACTGAAGCTC
* * *
36001574 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * *
36001624 TCTGGTACACCTAGTAGCCTGCACTTAGTACTACACAAGTGACTTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* ** *
36001674 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * ** *
36001724 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACAA
* * * * * *
36001775 TCGGGTACGCATAGTAGCTTGAACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
36001825 TCTGGTACATGTAGTAGCCTGCACTTGGTACTACACATGTGACCTAA-AA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
36001874 -CTGTCTTAAACACGTACTAGCCTGCACATAGTACTACACATGTG
1 TCTG--GT--ACACGTAGTAGCCTGCACTTAGTACTACACATGTG
36001918 TTCTCACAAC
Statistics
Matches: 250, Mismatches: 39, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
48 3 0.01
49 2 0.01
50 175 0.70
51 39 0.16
52 31 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:36001828 original size:151 final size:151
Alignment explanation
Indices: 36001585--36001913 Score: 399
Period size: 151 Copynumber: 2.2 Consensus size: 151
36001575 CTGGTACGCA
* ** * * * *
36001585 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACCTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAAACAATCGGGTACACATAGTAGCCTGAACTT
* * * *
36001650 AGTACTACACAAGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATG
66 AGTACTACACAAGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATG
*
36001715 ACCT-AACCATCTGATACACG
131 ACCTAAACCATCTGAAACACG
* * *
36001735 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAACTATCGGGTACGCATAGTAGCTTGAACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAAACAATCGGGTACACATAGTAGCCTGAACT
* * * * **
36001800 TAGTACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCACTTGGTACTACACATGT
65 TAGTACTACACAAGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACAT
** *
36001865 GACCTAAAACTGTCTTAAACACG
130 GACCT-AAACCATCTGAAACACG
* *
36001888 TACTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
36001914 TGTGTTCTCA
Statistics
Matches: 150, Mismatches: 26, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
150 30 0.20
151 84 0.56
153 36 0.24
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (151 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAAACAATCGGGTACACATAGTAGCCTGAACTT
AGTACTACACAAGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATG
ACCTAAACCATCTGAAACACG
Found at i:36002580 original size:30 final size:30
Alignment explanation
Indices: 36002536--36002594 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
36002526 CAAAAATCAT
* *
36002536 ACTTTTACAAATTTTCATTTTGACCCCTAA
1 ACTTTCACAAATTTTCACTTTGACCCCTAA
* *
36002566 ACTTTCACATATTTTCACTTTGGCCCCTA
1 ACTTTCACAAATTTTCACTTTGACCCCTA
36002595 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.05, T:0.42
Consensus pattern (30 bp):
ACTTTCACAAATTTTCACTTTGACCCCTAA
Found at i:36005918 original size:25 final size:25
Alignment explanation
Indices: 36005872--36005922 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
36005862 CCCTTATAAT
* *
36005872 GTGAAAATGACCTTTTTGCCCTTAG
1 GTGAAAATGACCTTTATACCCTTAG
36005897 GTGAAAATGA-CTATTATACCCTTAG
1 GTGAAAATGACCT-TTATACCCTTAG
36005922 G
1 G
36005923 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCTTAG
Found at i:36005981 original size:10 final size:10
Alignment explanation
Indices: 36005966--36006000 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
36005956 TTTGTACATA
36005966 ATATGCCATG
1 ATATGCCATG
36005976 ATATGCACATG
1 ATATGC-CATG
36005987 ATATGCCATG
1 ATATGCCATG
36005997 ATAT
1 ATAT
36006001 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:36005985 original size:21 final size:21
Alignment explanation
Indices: 36005961--36006000 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
36005951 ACTGATTTGT
36005961 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
36005982 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
36006001 ATATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:36006105 original size:24 final size:23
Alignment explanation
Indices: 36006051--36006115 Score: 78
Period size: 22 Copynumber: 2.8 Consensus size: 23
36006041 AGGAAGTGCT
* **
36006051 AAAGGGCTATGCCCAG-TTACCG
1 AAAGGGCTTTGCCCAGTTTACAA
36006073 AAAGGGCTTTGCCCAGTTTATCAA
1 AAAGGGCTTTGCCCAGTTTA-CAA
36006097 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTTTG-CCCAGTT
36006116 ATTAAAAGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 15 0.41
23 3 0.08
24 12 0.32
25 7 0.19
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (23 bp):
AAAGGGCTTTGCCCAGTTTACAA
Found at i:36006117 original size:24 final size:23
Alignment explanation
Indices: 36006051--36006122 Score: 83
Period size: 24 Copynumber: 3.1 Consensus size: 23
36006041 AGGAAGTGCT
* **
36006051 AAAGGGCTATGCCCAGTTA-CCG
1 AAAGGGCTTTGCCCAGTTATCAA
36006073 AAAGGGCTTTGCCCAGTTTATCAA
1 AAAGGGCTTTGCCCAG-TTATCAA
*
36006097 AAAGGGCTTTGCCCCAGTTATTAA
1 AAAGGGCTTTG-CCCAGTTATCAA
36006121 AA
1 AA
36006123 GAGGCTAGGC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
22 15 0.35
23 3 0.07
24 20 0.47
25 5 0.12
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (23 bp):
AAAGGGCTTTGCCCAGTTATCAA
Found at i:36006128 original size:24 final size:24
Alignment explanation
Indices: 36006062--36006142 Score: 69
Period size: 24 Copynumber: 3.4 Consensus size: 24
36006052 AAGGGCTATG
* *
36006062 CCCAGTTACCGAAAG-GGCTTTG-
1 CCCAGTTATCAAAAGAGGCTTTGC
36006084 CCCAGTTTATCAAAA-AGGGCTTTGC
1 CCCAG-TTATCAAAAGA-GGCTTTGC
* **
36006109 CCCAGTTATTAAAAGAGGCTAGGC
1 CCCAGTTATCAAAAGAGGCTTTGC
36006133 CTCCAGTTAT
1 C-CCAGTTAT
36006143 ATGATAAAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
22 5 0.10
23 7 0.15
24 22 0.46
25 14 0.29
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (24 bp):
CCCAGTTATCAAAAGAGGCTTTGC
Found at i:36006371 original size:31 final size:31
Alignment explanation
Indices: 36006336--36006412 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
36006326 CGTTTACAGT
36006336 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
36006367 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
36006398 AAAGGCATT-GGCCCA
1 AAAGGC-TTCGGCCCA
36006413 ATATATGCTG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
31 42 0.95
32 2 0.05
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:36013830 original size:25 final size:25
Alignment explanation
Indices: 36013784--36013834 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
36013774 CCCTTATAAT
* *
36013784 GTGAAAATGACCTTTTTGCCCTTAG
1 GTGAAAATGACCTTTATACCCTTAG
36013809 GTGAAAATGA-CTATTATACCCTTAG
1 GTGAAAATGACCT-TTATACCCTTAG
36013834 G
1 G
36013835 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCTTAG
Found at i:36013897 original size:21 final size:21
Alignment explanation
Indices: 36013873--36013912 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
36013863 ACTGATTTGT
*
36013873 ACATAATATTCCATGATATGC
1 ACATAATATGCCATGATATGC
*
36013894 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
36013913 ATATATATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:36013908 original size:10 final size:10
Alignment explanation
Indices: 36013878--36013912 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
36013868 TTTGTACATA
*
36013878 ATATTCCATG
1 ATATGCCATG
36013888 ATATGCACATG
1 ATATGC-CATG
36013899 ATATGCCATG
1 ATATGCCATG
36013909 ATAT
1 ATAT
36013913 ATATATATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (10 bp):
ATATGCCATG
Found at i:36013985 original size:25 final size:24
Alignment explanation
Indices: 36013957--36014024 Score: 100
Period size: 25 Copynumber: 2.8 Consensus size: 24
36013947 AGGAAGTGCT
*
36013957 AAAGGGCTATGCCCCAGTTTACCGA
1 AAAGGGCTTTGCCCCAGTTTACC-A
*
36013982 AAAGGGCTTTGCCCCAGTTTATCA
1 AAAGGGCTTTGCCCCAGTTTACCA
*
36014006 AAAGGGCTTTGCCCAAGTT
1 AAAGGGCTTTGCCCCAGTT
36014025 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAGGGCTTTGCCCCAGTTTACCA
Found at i:36014013 original size:24 final size:24
Alignment explanation
Indices: 36013957--36014037 Score: 101
Period size: 24 Copynumber: 3.3 Consensus size: 24
36013947 AGGAAGTGCT
* *
36013957 AAAGGGCTATGCCCCAGTTTACCGA
1 AAAGGGCTTTGCCCCAGTTTATC-A
36013982 AAAGGGCTTTGCCCCAGTTTATCA
1 AAAGGGCTTTGCCCCAGTTTATCA
* *
36014006 AAAGGGCTTTGCCCAAG-TTATTA
1 AAAGGGCTTTGCCCCAGTTTATCA
36014029 AAAGAGGCT
1 AAAG-GGCT
36014038 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 9 0.18
24 21 0.41
25 21 0.41
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAGGGCTTTGCCCCAGTTTATCA
Found at i:36014280 original size:31 final size:31
Alignment explanation
Indices: 36014245--36014328 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
36014235 CGTTTACAGT
36014245 AAAGGCTTCGGCCCAGTTATATGAATAATGA
1 AAAGGCTTCGGCCCAGTTATATGAATAATGA
** *
36014276 AAAGGCTTCGGCCCAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTTATATGAATAATGA
*
36014307 AAAGGCTTCGGCCTAG-TATATG
1 AAAGGCTTCGGCCCAGTTATATG
36014329 CTGAGATTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTTATATGAATAATGA
Found at i:36018473 original size:15 final size:15
Alignment explanation
Indices: 36018454--36018498 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
36018444 AACTAGGATT
*
36018454 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
*
36018469 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
36018484 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
36018499 TAATATCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.56, C:0.13, G:0.18, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:36021451 original size:180 final size:181
Alignment explanation
Indices: 36021153--36021480 Score: 543
Period size: 180 Copynumber: 1.8 Consensus size: 181
36021143 AATTTTATAT
* *
36021153 GAAACTAGAATCATATATATTATTACCATAAAATTTTCAGAATTCTTGTGTTTATCCAATTAGTA
1 GAAACTAGAATCACATATATTATTACCATAAAATTTTCAGAATTCTTGTGTTTAGCCAATTAGTA
* * *
36021218 CAGTTTATTCATTAAAGATACCCCTATTTCACTGTCCGATAGTTCTAACCTCTCTTCACTAAAAA
66 CAGTTTATTCATTAAAGATACCCCTACTTCACTGTCCGACAGTTCCAACCTCTCTTCACTAAAAA
* *
36021283 TTATTTATTTCGTGGTACGGGACTCCAAATTGAGAACCACTAATTTTTCCA
131 TTATTTATCTCATGGTACGGGACTCCAAATTGAGAACCACTAATTTTTCCA
* *
36021334 GAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATT-TT-TAGTTTAGCCAATTAGT
1 GAAACTAGAATCACATATATTATTACCATAAAATTTTCAGAATTCTTGT-GTTTAGCCAATTAGT
*
36021397 ACAGTTTATTCATTAAAGATACCCCTGCTTCACTGTCCGACAGTTCCAACCTCTCTTCACTAAAA
65 ACAGTTTATTCATTAAAGATACCCCTACTTCACTGTCCGACAGTTCCAACCTCTCTTCACTAAAA
36021462 ATTATTTATCTCATGGTAC
130 ATTATTTATCTCATGGTAC
36021481 AGCTCTCGGA
Statistics
Matches: 136, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
179 1 0.01
180 94 0.69
181 41 0.30
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (181 bp):
GAAACTAGAATCACATATATTATTACCATAAAATTTTCAGAATTCTTGTGTTTAGCCAATTAGTA
CAGTTTATTCATTAAAGATACCCCTACTTCACTGTCCGACAGTTCCAACCTCTCTTCACTAAAAA
TTATTTATCTCATGGTACGGGACTCCAAATTGAGAACCACTAATTTTTCCA
Found at i:36021830 original size:16 final size:16
Alignment explanation
Indices: 36021811--36021841 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36021801 ATTGTTTTAG
36021811 TACAAAATTTCACTTT
1 TACAAAATTTCACTTT
*
36021827 TACATAATTTCACTT
1 TACAAAATTTCACTT
36021842 ACTTCATTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (16 bp):
TACAAAATTTCACTTT
Found at i:36022133 original size:50 final size:49
Alignment explanation
Indices: 36022049--36022301 Score: 231
Period size: 50 Copynumber: 5.1 Consensus size: 49
36022039 TCTCTGGTAT
**
36022049 ACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTAGTAC
1 ACATAGTAGCCCGCACTTAGTACTACACATGCGACCTATCAATCT-GTAC
* * * * *
36022099 ACGTAATAGCCCGCACTTAGTACTACACACGCGACTTATCCATCTGATAC
1 ACATAGTAGCCCGCACTTAGTACTACACATGCGACCTATCAATCTG-TAC
* * * * ** *
36022149 ACGTAGTAGCCTGCACTTAGTACTACACATGTC-A-TTGAAGTTAATGGGTAT
1 ACATAGTAGCCCGCACTTAGTACTACACATG-CGACCT--A-TCAATCTGTAC
* *
36022200 GCATAGTATCCCGCACTTAGTACTACACATGCGACCTATCAATCTGTAC
1 ACATAGTAGCCCGCACTTAGTACTACACATGCGACCTATCAATCTGTAC
* * * * * *
36022249 ACATAGCAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATAC
1 ACATAGTAGCCCGCACTTAGTACTACACATGCGACCTATCAATCTG-TAC
36022299 ACA
1 ACA
36022302 CAGTGTAACA
Statistics
Matches: 163, Mismatches: 32, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
49 48 0.29
50 78 0.48
51 32 0.20
52 5 0.03
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (49 bp):
ACATAGTAGCCCGCACTTAGTACTACACATGCGACCTATCAATCTGTAC
Found at i:36025228 original size:7 final size:7
Alignment explanation
Indices: 36025216--36025249 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
36025206 TAATTTTATG
36025216 ATATAAC
1 ATATAAC
36025223 ATATAAC
1 ATATAAC
36025230 ATATAAC
1 ATATAAC
*
36025237 ATATATC
1 ATATAAC
36025244 ATATAA
1 ATATAA
36025250 TTTATAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (7 bp):
ATATAAC
Found at i:36037359 original size:52 final size:50
Alignment explanation
Indices: 36037182--36037370 Score: 157
Period size: 50 Copynumber: 3.7 Consensus size: 50
36037172 ATCGGGTTGT
* ** * **
36037182 TACACGTAGTAGCCTACACTTAGTACTACACACT-TGATCAAAACTATCGGG
1 TACACATAGTAGCCTACACTTAGTACTACACA-TGTGA-CCTAACAATCTAG
* * * *
36037233 TGCGCATAGTAGCCTACACTTAGTGCTACACATGCGACCTAACAATCTAG
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTAG
* * * * **
36037283 TACACGTAGTAGCTTGCACTTAGTACTACACATGTGACTTAA-AACTCTCT
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA-TCTAG
* *
36037333 TAAACATATAGTAGCCTACACATAGTACTACACATGTG
1 T--ACACATAGTAGCCTACACTTAGTACTACACATGTG
36037371 TTCTCACAAC
Statistics
Matches: 109, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
49 2 0.02
50 47 0.43
51 30 0.28
52 30 0.28
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (50 bp):
TACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTAG
Found at i:36039399 original size:25 final size:27
Alignment explanation
Indices: 36039346--36039398 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
36039336 ACCCCCTTTG
36039346 TGGTAAAATGACTGTATTGCCCTTATA
1 TGGTAAAATGACTGTATTGCCCTTATA
*
36039373 TGGTAAAATGACTAT-TATGCCCTTAT
1 TGGTAAAATGACTGTAT-TGCCCTTAT
36039399 GAGATGTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (27 bp):
TGGTAAAATGACTGTATTGCCCTTATA
Found at i:36046665 original size:37 final size:37
Alignment explanation
Indices: 36046624--36046700 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
36046614 AGAAATAATG
36046624 TTTTAATGTTAATAACAATTAAATATGATTAAATTTT
1 TTTTAATGTTAATAACAATTAAATATGATTAAATTTT
*
36046661 TTTTAATGTTAATAACAATTAAATATGATTAACTTTT
1 TTTTAATGTTAATAACAATTAAATATGATTAAATTTT
36046698 TTT
1 TTT
36046701 CCAAATGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (37 bp):
TTTTAATGTTAATAACAATTAAATATGATTAAATTTT
Found at i:36061872 original size:48 final size:48
Alignment explanation
Indices: 36061574--36061883 Score: 182
Period size: 48 Copynumber: 6.6 Consensus size: 48
36061564 TGAGCTAGTA
* * ** * *
36061574 TAAGA-CATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGCG
1 TAAGACCATGTCTGGGACATGCATCAGCCTCGAAGATGATAGCCAGTG
* ** * * *
36061620 TAAGACCATGTATGGGACATAGCATTGGCATTGAA-ATGAGT-GCTAGTG
1 TAAGACCATGTCTGGGACAT-GCATCAGCCTCGAAGATGA-TAGCCAGTG
* * * * *
36061668 TAAGA-CATGTCTAGGACATGCATCAGTCTCG-GGA-CATAAGCCAGTA
1 TAAGACCATGTCTGGGACATGCATCAGCCTCGAAGATGAT-AGCCAGTG
* *
36061714 TAAGA-CATGTCTGGGATATGCATCAG-CTACG-AGATG-T-GTCAGTG
1 TAAGACCATGTCTGGGACATGCATCAGCCT-CGAAGATGATAGCCAGTG
* * * * * * *
36061758 TAAGACCATGTCTGAGACATGGCATCGGCACGGT-TATG-TGAGAGCTAGTA
1 TAAGACCATGTCTGGGACAT-GCATCAGC-C--TCGAAGATGATAGCCAGTG
36061808 TAAGACCATGTCTGGGACATGGCATC-GCCTCGAAGATGATAGCCAGTG
1 TAAGACCATGTCTGGGACAT-GCATCAGCCTCGAAGATGATAGCCAGTG
*
36061856 TAAGACCATGTTTGGGACATGGCATCAG
1 TAAGACCATGTCTGGGACAT-GCATCAG
36061884 TACTTTACCC
Statistics
Matches: 201, Mismatches: 42, Indels: 39
0.71 0.15 0.14
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 54 0.27
47 27 0.13
48 59 0.29
49 5 0.02
50 30 0.15
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGCATCAGCCTCGAAGATGATAGCCAGTG
Found at i:36063759 original size:29 final size:29
Alignment explanation
Indices: 36063696--36063763 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
36063686 TAATCAACCG
*
36063696 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
36063725 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
36063754 CGCACACTTA
1 CGCACACTTA
36063764 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:36064078 original size:29 final size:30
Alignment explanation
Indices: 36064039--36064117 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
36064029 CTTAATAATC
36064039 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
36064069 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
36064098 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36064118 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:36064111 original size:174 final size:174
Alignment explanation
Indices: 36063585--36064086 Score: 896
Period size: 174 Copynumber: 2.9 Consensus size: 174
36063575 AACTCAAGGT
** * *
36063585 ACTTACCTTTTGGGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
36063650 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
36063715 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
* *
36063759 ACTTACCTTTTCCGCTGTCCAAATTCGACTCGGTAAAGTCGCACCCTTAATATAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
36063824 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
* *
36063889 ACTTTAAACTCACACACTTAATGCCATGCATTTCTAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
36063933 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
36063998 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
36064063 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
36064087 TGTACAATTT
Statistics
Matches: 311, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 311 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:36072069 original size:29 final size:29
Alignment explanation
Indices: 36072006--36072073 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
36071996 TAATCAACCG
*
36072006 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
36072035 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
36072064 CGCACACTTA
1 CGCACACTTA
36072074 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:36072185 original size:173 final size:174
Alignment explanation
Indices: 36071895--36072394 Score: 941
Period size: 173 Copynumber: 2.9 Consensus size: 174
36071885 AACTCAAGGT
* *
36071895 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
36071960 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
36072025 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
36072069 ACTTACCTTTTCCGCTGTCC-AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
36072133 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATG-
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
36072197 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
36072241 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
36072306 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
36072371 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
36072395 TGTACAATTT
Statistics
Matches: 318, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
172 64 0.20
173 211 0.66
174 43 0.14
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:36072386 original size:29 final size:30
Alignment explanation
Indices: 36072347--36072425 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
36072337 CTTAATAATC
36072347 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
36072377 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
36072406 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36072426 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:36095300 original size:79 final size:81
Alignment explanation
Indices: 36095191--36095373 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
36095181 TACTCGTTCA
* * *
36095191 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
36095254 ATTTAGTGAC-TCGCACC
65 ATATAGTGACTTAGCA-C
**
36095271 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
36095334 TATAGTGACTTAGCAC
66 TATAGTGACTTAGCAC
*
36095350 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
36095374 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTGACTTAGCAC
Found at i:36095373 original size:40 final size:40
Alignment explanation
Indices: 36095170--36095373 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
36095160 CAGAATTTAA
** *
36095170 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36095210 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36095250 CCGGATTTAGTGACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36095289 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
36095329 CCGGATATAGTGACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36095369 CCGGA
1 CCGGA
36095374 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 92 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36097886 original size:25 final size:24
Alignment explanation
Indices: 36097824--36097886 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 24
36097814 AGCTTCGGAT
* * *
36097824 AGCCATATAATAGGAAGTTCAAGCG
1 AGCC-TATATTAGGAAGCTCAAGAG
*
36097849 AGCC-ATATCAGGAAGCTCAAGAAG
1 AGCCTATATTAGGAAGCTCAAG-AG
36097873 AGCCTATATTAGGA
1 AGCCTATATTAGGA
36097887 CTCTTATAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
23 14 0.45
24 5 0.16
25 12 0.39
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (24 bp):
AGCCTATATTAGGAAGCTCAAGAG
Found at i:36101049 original size:49 final size:49
Alignment explanation
Indices: 36100992--36101364 Score: 372
Period size: 49 Copynumber: 7.5 Consensus size: 49
36100982 CTAGTATGCA
*
36100992 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * *** ** * * *
36101041 CAGTAGCCTACACTTAATACTACACACATGACCTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
* * * * ** *
36101091 TAGTAGCCTGTACTTAGTACTACACACGTGATCAAATTTAT-CGAGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCG-GTACACG
* * *
36101142 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTACCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * ** ** *
36101191 TAGTAGCCTGCGCTTAGTACTACACACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
* * * *
36101241 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCTGGTACGCC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
36101290 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
36101339 TAGTAAG-CTGCACTTAGTACTACACA
1 TAGT-AGCCTGCACTTAGTACTACACA
36101365 CGTGAGCTCA
Statistics
Matches: 256, Mismatches: 61, Indels: 14
0.77 0.18 0.04
Matches are distributed among these distances:
49 140 0.55
50 84 0.33
51 32 0.12
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:36101167 original size:99 final size:96
Alignment explanation
Indices: 36100992--36101364 Score: 344
Period size: 99 Copynumber: 3.8 Consensus size: 96
36100982 CTAGTATGCA
* * * *
36100992 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG-GTACACACAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTAT-CGAGTACACATAGTAGCCTACACTT
* ** *
36101056 AATACTACACACATGACCTAACCATCTGATACATG
65 AGTACT--ACACATGACC-AATTATCTGGTACATG
* **
36101091 TAGTAGCCTGTACTTAGTACTACACACGTGATCAAATTTATCGAGTATGCATAGTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATCGAGTACACATAGTAGCCTACACT
* *
36101156 TAGTACTACACATGCGACCAATTACCCGGTACATG
64 TAGTACTACACAT--GACCAATTATCTGGTACATG
* * *
36101191 TAGTAGCCTGCGCTTAGTACTACACACGTGACCTAACCATT-T-GA-TACACGTAGTAGCCTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-AA--ATTATCGAGTACACATAGTAGCCTACA
***
36101253 CTTAGTACTACACATGCAACCAATTATCTGGTACGCC
62 CTTAGTACTACACATG--ACCAATTATCTGGTACATG
* * * * *
36101290 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG-GTACACGTAGTAAG-CTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTAT-CGAGTACACATAGT-AGCCTACACT
36101353 TAGTACTACACA
64 TAGTACTACACA
36101365 CGTGAGCTCA
Statistics
Matches: 230, Mismatches: 29, Indels: 31
0.79 0.10 0.11
Matches are distributed among these distances:
95 3 0.01
96 1 0.00
97 2 0.01
98 31 0.13
99 107 0.47
100 48 0.21
101 35 0.15
102 2 0.01
103 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (96 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCGAGTACACATAGTAGCCTACACTTA
GTACTACACATGACCAATTATCTGGTACATG
Found at i:36101217 original size:150 final size:148
Alignment explanation
Indices: 36100979--36101365 Score: 555
Period size: 150 Copynumber: 2.6 Consensus size: 148
36100969 TAGAGAAGGC
* **
36100979 TATCTAGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACACAG
1 TATCGAGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
* * * *
36101044 TAGCCTACACTTAATACTACACACATGACCTAACCATCTGATACATGTAGTAGCCTGTACTTAGT
66 TAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGT
*
36101109 ACTACACACGTG-ATCAAATT
131 ACTACACA--TGCAACAAA-T
* * *
36101129 TATCGAGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTACCCGGTACATGTAG
1 TATCGAGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
* * *
36101194 TAGCCTGCGCTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCTGCACTTAGT
66 TAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGT
*
36101259 ACTACACATGCAACCAAT
131 ACTACACATGCAACAAAT
* *
36101277 TATCTG-GTACGCCTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTA
1 TATC-GAGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTA
36101341 GTAAG-CTGCACTTAGTACTACACAC
65 GT-AGCCTGCACTTAGTACTACACAC
36101366 GTGAGCTCAC
Statistics
Matches: 213, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
148 81 0.38
149 7 0.03
150 125 0.59
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (148 bp):
TATCGAGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
TAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGT
ACTACACATGCAACAAAT
Found at i:36105132 original size:133 final size:132
Alignment explanation
Indices: 36104914--36105159 Score: 359
Period size: 133 Copynumber: 1.9 Consensus size: 132
36104904 TCTGCCCATA
* *
36104914 TGACCAATTCTAAGCATTCTGTTTCTCAATTTTTAGATGCAGGGGACACACGGCCAAACCACACG
1 TGACCAATTCTAAACATTCTGTTTCTCAATTTTTAGATGCAAGGGACACACGGCCAAACCACACG
* * * *
36104979 CCTATGCGTATGGTCGTGTGTGACACATGGTTGAGACACACAAACCACGCCCGTATTTCTACCCG
66 CCCATGCGTATGGCCGTGTGTCACACACGGTTGAGACACACAAACCACGCCCGTATTTCTACCCG
36105044 TG
131 TG
* * * *
36105046 TGACCAATTCTAAATAGTT-TGTTTCTCAATTTTTAAGATGCAAGGGACACATGGCCAAAGCATA
1 TGACCAATTCTAAACA-TTCTGTTTCTCAATTTTT-AGATGCAAGGGACACACGGCCAAACCACA
* *
36105110 CGCCCGTGTGTATGGCCGTGTGTCACACACGGTTGAGACACACAAACCAC
64 CGCCCATGCGTATGGCCGTGTGTCACACACGGTTGAGACACACAAACCAC
36105160 ATACACATGC
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
132 29 0.29
133 71 0.71
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (132 bp):
TGACCAATTCTAAACATTCTGTTTCTCAATTTTTAGATGCAAGGGACACACGGCCAAACCACACG
CCCATGCGTATGGCCGTGTGTCACACACGGTTGAGACACACAAACCACGCCCGTATTTCTACCCG
TG
Found at i:36110431 original size:21 final size:21
Alignment explanation
Indices: 36110392--36110432 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36110382 GAATTTAACG
**
36110392 TCAATTTAATCCATTTCACAC
1 TCAATTTAATCCAACTCACAC
*
36110413 TCAATTTAATTCAACTCACA
1 TCAATTTAATCCAACTCACA
36110433 TCTTGGCAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (21 bp):
TCAATTTAATCCAACTCACAC
Found at i:36114421 original size:24 final size:24
Alignment explanation
Indices: 36114377--36114422 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
36114367 ATGCTAATCC
*
36114377 ATTATGACTTCTATTAGTTTTATT
1 ATTATGACTTCTATTAATTTTATT
*
36114401 ATTATTACTT-TATTATATTTTA
1 ATTATGACTTCTATTA-ATTTTA
36114423 ATAAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (24 bp):
ATTATGACTTCTATTAATTTTATT
Found at i:36131480 original size:28 final size:28
Alignment explanation
Indices: 36131448--36131517 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
36131438 AATGAGATTG
36131448 GCACTAAGTGTGCGAGTTTAATTA-TATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
36131476 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
*
36131504 GCACTAACTGTGCG
1 GCACTAAGTGTGCG
36131518 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:36138764 original size:12 final size:12
Alignment explanation
Indices: 36138747--36138771 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36138737 CACATTCGGC
36138747 TATATATATAAA
1 TATATATATAAA
36138759 TATATATATAAA
1 TATATATATAAA
36138771 T
1 T
36138772 GTATGCCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TATATATATAAA
Found at i:36139350 original size:28 final size:28
Alignment explanation
Indices: 36139318--36139387 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
36139308 AATGAGATTG
*
36139318 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
36139346 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
36139374 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36139388 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:36148532 original size:87 final size:84
Alignment explanation
Indices: 36148441--36148833 Score: 221
Period size: 87 Copynumber: 4.5 Consensus size: 84
36148431 GAGGGCAGAC
*
36148441 ACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGT
1 ACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGT
36148506 GTTTAC-AAGGAACAAATCGAAG
66 GTTT-CGAAGGAACAAA--G-AG
* * * * * * *
36148528 ACATAGCAGATTTGA-CTTCGGATGTTCTCACACTAAAGCAGATCCAAGGTAACAGATCTGGCA-
1 ACATAGCAGATCTAACCTTCAGATGTT-T-ATACTGAAGCAGATCCAA-G--A-TGATTTGGCAT
** * **** *
36148591 TCTT-CATTTCGACGGAGGGCAGAT
60 TCTTGTGTTTCGAAGGAACAAAGAG
* * *
36148615 ACATAGCAGATCTAACCTTCAGATGATTT-TACTGAATCAGATCTAAGATAACAGATTTGGC-GT
1 ACATAGCAGATCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGAT----GATTTGGCATT
** * * *
36148678 CTCCAT-ATTCGACGGAGAGC--AGAC
61 CT-TGTGTTTCGAAGGA-A-CAAAGAG
* * * * *
36148702 ACATAGCTGATTTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATAATTTGGCATCCTTGT
1 ACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGT
* *
36148767 GTTTAC-AAGGAGCAAATCAAAG
66 GTTT-CGAAGGAAC-AA--AGAG
**
36148789 ACATAGCAGATCTAACCTTCAGATGTTTACGCTGAAGCAGATCCA
1 ACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCA
36148834 TTTACTGTAA
Statistics
Matches: 228, Mismatches: 51, Indels: 54
0.68 0.15 0.16
Matches are distributed among these distances:
82 1 0.00
83 9 0.04
84 8 0.04
85 2 0.01
86 36 0.16
87 122 0.54
88 25 0.11
89 4 0.02
90 8 0.04
91 5 0.02
92 8 0.04
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (84 bp):
ACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGT
GTTTCGAAGGAACAAAGAG
Found at i:36148628 original size:174 final size:177
Alignment explanation
Indices: 36148342--36148663 Score: 485
Period size: 174 Copynumber: 1.8 Consensus size: 177
36148332 AACGAGGAGA
* * *
36148342 AAATCAAAGACATAGCAGATTTGACTTTTAGATGTTTTTCACATCAAAGTAGATCCAAGATAACA
1 AAATCAAAGACATAGCAGATTTGACTTTCAGATGTTTCTCACATCAAAGCAGATCCAAGATAACA
*
36148407 GATCTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATG-TTTAT
66 GATCTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGATTT-T
36148471 ACTGAAGT-AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
130 ACTGAA-TCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
* * *
36148519 AAATCGAAGACATAGCAGATTTGAC-TTCGGATG-TTCTCACA-CTAAAGCAGATCCAAGGTAAC
1 AAATCAAAGACATAGCAGATTTGACTTTCAGATGTTTCTCACATC-AAAGCAGATCCAAGATAAC
* *
36148581 AGATCTGGCATCTTCAT-TTCGACGGAGGGCAGATACATAGCAGATCTAACCTTCAGATGATTTT
65 AGATCTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGATTTT
*
36148645 ACTGAATCAGATCTAAGAT
130 ACTGAATCAGATCCAAGAT
36148664 AACAGATTTG
Statistics
Matches: 132, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
173 1 0.01
174 59 0.45
175 42 0.32
176 6 0.05
177 24 0.18
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (177 bp):
AAATCAAAGACATAGCAGATTTGACTTTCAGATGTTTCTCACATCAAAGCAGATCCAAGATAACA
GATCTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGATTTTA
CTGAATCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
Found at i:36148906 original size:42 final size:42
Alignment explanation
Indices: 36148859--36148992 Score: 232
Period size: 42 Copynumber: 3.2 Consensus size: 42
36148849 TGGCCCTTAG
* * *
36148859 GCCCATTTCAAAATCACATGTAATGTCAATGGATGTATGGAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
36148901 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
36148943 GCCTATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
36148985 GCCCATTT
1 GCCCATTT
36148993 GGGGAACCCA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:36149144 original size:24 final size:24
Alignment explanation
Indices: 36149103--36149200 Score: 58
Period size: 25 Copynumber: 4.0 Consensus size: 24
36149093 GCTTTATCAT
**
36149103 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGGAGGCAAAGCC-CTTTTA
*
36149128 ATAACT-GAGGCAAAGCCCTTTCTG
1 ATAACTGGAGGCAAAGCCCTTT-TA
* * *
36149152 ATAAATTGG-GGCAAAGGCCTTTTCG
1 AT-AACTGGAGGCAAAGCCCTTTT-A
* *
36149177 GTACACTGG-GGCAGAGCCCTTTTA
1 ATA-ACTGGAGGCAAAGCCCTTTTA
36149201 GCACTTCCTC
Statistics
Matches: 58, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
23 4 0.07
24 14 0.24
25 39 0.67
26 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (24 bp):
ATAACTGGAGGCAAAGCCCTTTTA
Found at i:36150039 original size:27 final size:26
Alignment explanation
Indices: 36150009--36150110 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 26
36149999 GGGCATATTC
*
36150009 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACC-TACAAGGGTATTACA
* *
36150036 GTCACTTTACCCTACATGGGCT-TTACA
1 GTCATTTTA-CCTACAAGGG-TATTACA
* * **
36150063 GTCTTTTTACCTATTAAGGGTATTTTA
1 GTCATTTTACCTA-CAAGGGTATTACA
*
36150090 GTCATTTCATCCTACAAGGGT
1 GTCATTTTA-CCTACAAGGGT
36150111 GTTTTGGTAA
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
26 5 0.09
27 46 0.79
28 7 0.12
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGTATTACA
Found at i:36150157 original size:27 final size:27
Alignment explanation
Indices: 36150104--36150340 Score: 174
Period size: 27 Copynumber: 8.7 Consensus size: 27
36150094 TTTCATCCTA
* * *
36150104 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
36150131 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
36150158 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-C
* ** *
36150187 CAAGGGTATTTCT-GAAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAC
*
36150214 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * *
36150241 TTAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
**
36150268 C-AGTGGTATTTCAGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
* * *
36150295 TAGGGGTATTTTGGTAATTTTAGAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
36150322 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
36150341 CTATCCTACA
Statistics
Matches: 172, Mismatches: 32, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 139 0.81
28 16 0.09
29 14 0.08
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:36150276 original size:54 final size:54
Alignment explanation
Indices: 36150217--36150373 Score: 165
Period size: 54 Copynumber: 2.9 Consensus size: 54
36150207 TGTAAATCAA
*
36150217 GGGTATTTTGGTAATTTTACAAATTTA-GGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTCGGTAATTTCACAAACCAG
* ** * * * *
36150271 TGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTAGAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAG
* ** * *
36150325 GGGTATTTTGGTAATTCTATCCTAC-AGGGATATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGGTAATTTCACAA
36150374 TCGAGGATAA
Statistics
Matches: 82, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
53 2 0.02
54 77 0.94
55 3 0.04
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAG
Found at i:36150359 original size:81 final size:81
Alignment explanation
Indices: 36150217--36150373 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
36150207 TGTAAATCAA
*
36150217 GGGTATTTTGGTAATTTTACAAATTTAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCAG
1 GGGTATTTTGGTAATTTTACAAATCTAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCAG
*
36150282 TAATTTTACAAACTAG
66 TAATTTCACAAACTAG
* * **
36150298 GGGTATTTTGGTAATTTTAGAAA-CTAGGGGTATTTTGGTAA-TTCTATCCTA-CAG-GGATATT
1 GGGTATTTTGGTAATTTTACAAATCTA-GGGTATTTCGGTAATTTC-A-CAAACCAGTGG-TATT
36150359 TCAGTAATTTCACAA
62 TCAGTAATTTCACAA
36150374 TCGAGGATAA
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
80 7 0.11
81 57 0.86
82 2 0.03
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATCTAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCAG
TAATTTCACAAACTAG
Found at i:36150411 original size:27 final size:27
Alignment explanation
Indices: 36150372--36150569 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
36150362 GTAATTTCAC
* *
36150372 AATCGAGGATAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
36150399 AA-CTGAGGGTAAAATGATAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
36150426 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
36150453 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
36150480 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * * * *
36150507 AATTGATGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* **
36150534 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTGTA
36150561 AATCGAGGG
1 AATCGAGGG
36150570 CATTTCAGTA
Statistics
Matches: 148, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 146 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:36150488 original size:81 final size:81
Alignment explanation
Indices: 36150372--36150569 Score: 272
Period size: 81 Copynumber: 2.4 Consensus size: 81
36150362 GTAATTTCAC
* * * * *
36150372 AATCGAGGATAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGATAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGATAATTTTGTAAATCGAGGGT
* * *
36150436 AAAATGGTAATTTTGTA
65 AAAACGGTAATTCTATA
* * *
36150453 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATTGATGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
36150518 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
*
36150534 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
36150570 CATTTCAGTA
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 103 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:36157798 original size:32 final size:32
Alignment explanation
Indices: 36157757--36157823 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
36157747 TCCCTGTGGG
36157757 TACGATAACTCAACATTCACTTGTCACTTTAT
1 TACGATAACTCAACATTCACTTGTCACTTTAT
* *
36157789 TACGATAACTCGACATTTACTTGTCACTTTAT
1 TACGATAACTCAACATTCACTTGTCACTTTAT
36157821 TAC
1 TAC
36157824 TTGTTGTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (32 bp):
TACGATAACTCAACATTCACTTGTCACTTTAT
Found at i:36159856 original size:40 final size:40
Alignment explanation
Indices: 36159648--36159840 Score: 298
Period size: 40 Copynumber: 4.8 Consensus size: 40
36159638 TATTCGGATG
*
36159648 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * *
36159689 ATATCCGGGTTAA-TCCCGAAGGCATTTGCGCTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
36159728 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
36159769 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
36159809 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
36159841 GATTTGCTAT
Statistics
Matches: 139, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 25 0.18
40 65 0.47
41 49 0.35
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:36167889 original size:81 final size:80
Alignment explanation
Indices: 36167751--36167945 Score: 293
Period size: 81 Copynumber: 2.4 Consensus size: 80
36167741 TTATTCGGAT
*
36167751 GATATCCGGGCTAAGATCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGTCAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGTCAAGTCCCGAAGG
*
36167816 CATTTGCGCTAGTGAC
65 CATTTGCGCGAGTGAC
*
36167832 GATATCCGAGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGG-CTAAGTCCCGAAG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGTC-AAGTCCCGAAG
* *
36167896 GCATTTGTGCGAGTTAC
64 GCATTTGCGCGAGTGAC
* *
36167913 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GATATCCGGGCTAAGACCCGAAGGCATTTGTGC
36167946 GATTTGCTAT
Statistics
Matches: 104, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
80 8 0.08
81 96 0.92
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTCAAGTCCCGAAGGC
ATTTGCGCGAGTGAC
Found at i:36167958 original size:40 final size:40
Alignment explanation
Indices: 36167752--36167945 Score: 284
Period size: 40 Copynumber: 4.8 Consensus size: 40
36167742 TATTCGGATG
36167752 ATATCCGGGCTAAGAT-CCGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCA-TTTGTGCTAGTGACT
* *
36167793 ATATCCGGG-TCAAGTCCCGAAGGCATTTGCGCTAGTGACG
1 ATATCCGGGCT-AAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
36167833 ATATCCGAGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
36167874 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
36167914 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
36167946 GATTTGCTAT
Statistics
Matches: 139, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
40 81 0.58
41 58 0.42
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:36189541 original size:38 final size:38
Alignment explanation
Indices: 36189456--36189598 Score: 173
Period size: 39 Copynumber: 3.7 Consensus size: 38
36189446 CTTAAAAGGC
** ** *
36189456 CCCGCAGGCTTTATGCTGAAATTATATCTGGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATC-CGGGTTAAAT
36189495 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
*
36189533 CCCACAGGCCTTCGTGCTGGTATTATATCCGGG-TAAAT
1 CCCGCAGG-CTTCGTGCTGGTATTATATCCGGGTTAAAT
* *
36189571 CCCGCA-GCCTAGTGCTGGATATTATATC
1 CCCGCAGGCTTCGTGCTGG-TATTATATC
36189599 TGAAGTTTAA
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
36 9 0.10
37 10 0.11
38 26 0.28
39 48 0.52
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
Found at i:36194371 original size:28 final size:27
Alignment explanation
Indices: 36194314--36194465 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
36194304 TAAATTGTGC
*
36194314 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36194341 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
36194369 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
36194396 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
36194424 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
36194451 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36194466 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:36194379 original size:55 final size:55
Alignment explanation
Indices: 36194314--36194465 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
36194304 TAAATTGTGC
*
36194314 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
36194369 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
36194424 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
36194466 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:36209871 original size:50 final size:50
Alignment explanation
Indices: 36209803--36210083 Score: 328
Period size: 50 Copynumber: 5.7 Consensus size: 50
36209793 GGTGCTGACA
* *
36209803 CCATGTCCCAGACATGGTCTTACACT-GACTCTCGTATATCGAGGCTGATG
1 CCATGTCCCAAACATGGTCTTACACTAG-CTCTCATATATCGAGGCTGATG
* *
36209853 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTATCG-GTGCCGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAG-GCTGATG
* * *
36209903 CCATGTCCCAAACATGGTCTTACACT-G---GCACATATC-AAG-TAGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGCT-GATG
* * * * *
36209948 CCATGTCCCAGACATTGTCTTACACTAGCTCCCATAT-TTGAGGCCGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGCTGATG
* *
36209997 CCATGTCCCAAACATGGTCTTACACTAGCTCTTATATCTCGAGGCTGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGCTGATG
* *
36210047 CCATGTCCGAGACATGGTCTTACACTAGCTCTCATAT
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
36210084 CTCCCTAACA
Statistics
Matches: 195, Mismatches: 25, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
45 29 0.15
46 7 0.04
48 1 0.01
49 45 0.23
50 112 0.57
51 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGCTGATG
Found at i:36210064 original size:144 final size:145
Alignment explanation
Indices: 36209803--36210072 Score: 402
Period size: 144 Copynumber: 1.9 Consensus size: 145
36209793 GGTGCTGACA
* * *
36209803 CCATGTCCCAGACATGGTCTTACACTGACTCTCGTATATCGAGGCTGATGCCATGTCCCAAACAT
1 CCATGTCCCAGACATGGTCTTACACTGACTCCCATATATCGAGGCCGATGCCATGTCCCAAACAT
*
36209868 GGTCTTACACTAGCTCTCATCTATCGGTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCA
66 GGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCA
36209933 CATATCAAGTAGATG
131 CATATCAAGTAGATG
* *
36209948 CCATGTCCCAGACATTGTCTTACACT-AGCTCCCATAT-TTGAGGCCGATGCCATGTCCCAAACA
1 CCATGTCCCAGACATGGTCTTACACTGA-CTCCCATATATCGAGGCCGATGCCATGTCCCAAACA
* * * * *
36210011 TGGTCTTACACTAGCTCTTATATCTCGAG-GCTGATGCCATGTCCGAGACATGGTCTTACACT
65 TGGTCTTACACTAGCTCTCATATATCG-GTGCCGATGCCATGTCCCAAACATGGTCTTACACT
36210073 AGCTCTCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
144 79 0.71
145 33 0.29
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (145 bp):
CCATGTCCCAGACATGGTCTTACACTGACTCCCATATATCGAGGCCGATGCCATGTCCCAAACAT
GGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCA
CATATCAAGTAGATG
Found at i:36211701 original size:14 final size:14
Alignment explanation
Indices: 36211682--36211710 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36211672 CTCCTGTTCT
36211682 ATATATTTTTGATA
1 ATATATTTTTGATA
36211696 ATATATTTTTGATA
1 ATATATTTTTGATA
36211710 A
1 A
36211711 GTTATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (14 bp):
ATATATTTTTGATA
Found at i:36213082 original size:18 final size:18
Alignment explanation
Indices: 36213040--36213084 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 18
36213030 TATTATTATT
36213040 TTTCTTTCTTTTTGTTCA
1 TTTCTTTCTTTTTGTTCA
*
36213058 TTCCTTTC-TTTTG--C-
1 TTTCTTTCTTTTTGTTCA
36213072 TTTCTTTCTTTTT
1 TTTCTTTCTTTTT
36213085 CTTTCCTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 7 0.29
15 5 0.21
17 5 0.21
18 7 0.29
ACGTcount: A:0.02, C:0.20, G:0.04, T:0.73
Consensus pattern (18 bp):
TTTCTTTCTTTTTGTTCA
Found at i:36215607 original size:42 final size:42
Alignment explanation
Indices: 36215499--36215615 Score: 157
Period size: 43 Copynumber: 2.8 Consensus size: 42
36215489 CGTACCAATG
* *
36215499 CCATATCCCA-AGTATGGTCTTACATGTAATCTCGTATCGATG
1 CCATATCCCAGA-TATGGTCTTACACGTAATCTCGTATCGATA
* *
36215541 CCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCGTATCGATA
1 CC-ATATCCCAGATATGGTCTTACACGTAA-TCTCGTATCGATA
36215584 CCATATCCCAGATATGGTCTTACACGTAATCT
1 CCATATCCCAGATATGGTCTTACACGTAATCT
36215616 TAGTAACCTT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
42 29 0.45
43 36 0.55
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.30
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGTAATCTCGTATCGATA
Found at i:36217272 original size:43 final size:43
Alignment explanation
Indices: 36217147--36217273 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
36217137 TAGAAAGCTC
* * * * *
36217147 ATACAATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCAA
1 ATACGATGCCAATGTCCCAGGCATGGTCTTACATGTAAATCAA
* * * * *
36217189 ATATCGATGTCACTATCCC-GGACAGGGTCTTACACG-AAATCAA
1 ATA-CGATGCCAATGTCCCAGG-CATGGTCTTACATGTAAATCAA
36217232 ATACGATGCCAATGTCCCAGGCATGGTCTTACATGTAAATCA
1 ATACGATGCCAATGTCCCAGGCATGGTCTTACATGTAAATCA
36217274 TAAGTCAATG
Statistics
Matches: 65, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
42 28 0.43
43 37 0.57
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (43 bp):
ATACGATGCCAATGTCCCAGGCATGGTCTTACATGTAAATCAA
Found at i:36227918 original size:14 final size:13
Alignment explanation
Indices: 36227892--36227931 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
36227882 GTTTAAAGAC
*
36227892 TTTTATTTATTAT
1 TTTTATTTTTTAT
36227905 TTTTATGTTTTTAT
1 TTTTAT-TTTTTAT
36227919 TTTTATCTTTTTA
1 TTTTAT-TTTTTA
36227932 AAACTACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:36241179 original size:96 final size:96
Alignment explanation
Indices: 36241069--36241368 Score: 482
Period size: 96 Copynumber: 3.1 Consensus size: 96
36241059 GTGAACATGC
*
36241069 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
36241134 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
36241165 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
36241230 CTAATGGCCGATGTGATGAATGTGAAAGTG--T
64 CTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * *
36241261 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * *
36241326 AGTGGCCAACGTGATGGATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
36241357 A-A-ATGTGATAAG
1 ATATATGTGATAAG
36241369 TCCCGAAGGG
Statistics
Matches: 192, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
94 50 0.26
95 1 0.01
96 94 0.49
98 47 0.24
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:36241187 original size:49 final size:47
Alignment explanation
Indices: 36241048--36241368 Score: 491
Period size: 47 Copynumber: 6.7 Consensus size: 47
36241038 TTAGGATTCT
* * *
36241048 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
36241095 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36241142 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
36241191 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
36241240 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
36241287 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
36241334 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36241369 TCCCGAAGGG
Statistics
Matches: 258, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 161 0.62
49 96 0.37
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:36241544 original size:37 final size:37
Alignment explanation
Indices: 36241487--36241565 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
36241477 CCGAGCTCTA
* * *
36241487 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
**
36241524 AAGACCCGATAACTTTGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36241561 AAGAC
1 AAGAC
36241566 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36242807 original size:34 final size:36
Alignment explanation
Indices: 36242769--36242847 Score: 99
Period size: 40 Copynumber: 2.1 Consensus size: 36
36242759 ATATGTACAT
36242769 GAGGATT-GAG-AGTGATATATCCGGGCTAAGTCCC
1 GAGGATTCGAGCAGTGATATATCCGGGCTAAGTCCC
*
36242803 GAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
1 GA-G-G-ATTCGAGC-AGTGATATATCCGGGCTAAGTCCC
36242843 GAGGA
1 GAGGA
36242848 GCACGAAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
34 2 0.05
35 1 0.03
36 1 0.03
37 4 0.11
38 3 0.08
39 1 0.03
40 26 0.68
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (36 bp):
GAGGATTCGAGCAGTGATATATCCGGGCTAAGTCCC
Found at i:36242869 original size:62 final size:62
Alignment explanation
Indices: 36242793--36242912 Score: 231
Period size: 62 Copynumber: 1.9 Consensus size: 62
36242783 ATATATCCGG
36242793 GCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCACGAA
1 GCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCACGAA
*
36242855 GCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCTGGGCTAAGTCCCGAGGAGCA
1 GCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCA
36242913 TTCGTGCTAG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.21
Consensus pattern (62 bp):
GCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCACGAA
Found at i:36243244 original size:40 final size:40
Alignment explanation
Indices: 36242855--36243230 Score: 565
Period size: 40 Copynumber: 9.4 Consensus size: 40
36242845 GGAGCACGAA
* * *
36242855 GCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCTGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* *
36242895 GCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
*
36242935 GCTAAGTCCCGAAGAGCATTCGTGCTACTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
*
36242975 GCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
*
36243015 GCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
*
36243055 GCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
*
36243095 GCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* * * *
36243135 GCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCGT
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* * * *
36243175 GCTAA-ACCTCGAAGAGCATTCGTGCTGGTGTTATATCCGG
1 GCTAAGTCC-CGAAGAGCATTCGTGCTAGTGATGTATCCGG
*
36243215 GCTAGGTCCCGAAGAG
1 GCTAAGTCCCGAAGAG
36243231 TAATCATGCT
Statistics
Matches: 315, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.00
40 312 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
Found at i:36246635 original size:47 final size:47
Alignment explanation
Indices: 36246581--36247185 Score: 1039
Period size: 47 Copynumber: 12.7 Consensus size: 47
36246571 TTAGGATTCT
* * * * *
36246581 ATGTGATGGATTTGAACGTGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36246628 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36246675 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
36246724 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36246771 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36246818 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36246865 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36246912 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36246959 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
36247008 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
36247057 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
36247104 ATGTGATGAATGTGAAAGTGTATATATGTGACATGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
36247151 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36247186 TCCCGAAGGG
Statistics
Matches: 539, Mismatches: 15, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
47 396 0.73
49 143 0.27
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:36247360 original size:37 final size:37
Alignment explanation
Indices: 36247304--36247382 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36247294 CCGAGCTCTA
* * *
36247304 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
36247341 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36247378 AAGAC
1 AAGAC
36247383 TTCGCAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36251276 original size:35 final size:35
Alignment explanation
Indices: 36251237--36251307 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
36251227 TAAGTAAAAT
36251237 TATTTCCAAGAAAACAAATTAAACATTCCTTAACC
1 TATTTCCAAGAAAACAAATTAAACATTCCTTAACC
*
36251272 TATTTCCAAGGAAACAAATTAAACATTCCTTAACC
1 TATTTCCAAGAAAACAAATTAAACATTCCTTAACC
36251307 T
1 T
36251308 TGTCGTTGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.44, C:0.23, G:0.04, T:0.30
Consensus pattern (35 bp):
TATTTCCAAGAAAACAAATTAAACATTCCTTAACC
Found at i:36258213 original size:27 final size:27
Alignment explanation
Indices: 36258183--36258360 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36258173 ATATTGAGTC
* * * *
36258183 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36258210 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36258237 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36258265 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36258292 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36258319 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36258346 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36258361 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36258322 original size:82 final size:81
Alignment explanation
Indices: 36258204--36258359 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36258194 TGCTATATAA
* *
36258204 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36258269 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36258286 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36258350 CACTTAGTGC
65 CACTTAGTGC
36258360 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36276434 original size:29 final size:29
Alignment explanation
Indices: 36276373--36276459 Score: 122
Period size: 29 Copynumber: 3.0 Consensus size: 29
36276363 CAAGTACTTG
* *
36276373 TATATGACCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
36276401 TATATGGTCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
36276430 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
36276459 T
1 T
36276460 TAGTCATGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 16 0.31
29 36 0.69
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:36276544 original size:17 final size:17
Alignment explanation
Indices: 36276522--36276559 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
36276512 ACCTATTATG
*
36276522 GGCCCAATAGCCCATCA
1 GGCCCAACAGCCCATCA
36276539 GGCCCAACAGCCCATCA
1 GGCCCAACAGCCCATCA
36276556 GGCC
1 GGCC
36276560 TATTAAGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.45, G:0.21, T:0.08
Consensus pattern (17 bp):
GGCCCAACAGCCCATCA
Found at i:36276731 original size:16 final size:16
Alignment explanation
Indices: 36276712--36276749 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
36276702 CTGTATTCTG
*
36276712 GCTTTTCAGTATATCA
1 GCTTTTCAGTATATAA
*
36276728 GCTTTTCAGTATTTAA
1 GCTTTTCAGTATATAA
36276744 GCTTTT
1 GCTTTT
36276750 GCCGATCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (16 bp):
GCTTTTCAGTATATAA
Found at i:36283303 original size:48 final size:48
Alignment explanation
Indices: 36283247--36283340 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
36283237 ATGTCTCATA
* *
36283247 TCGATGCCAATGCCATGTCCCAGACATGGTATTACGTGGGATCACATC
1 TCGATGCCAATGCCATGTCCCAAACATGGTATTACATGGGATCACATC
*
36283295 TCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
1 TCGATGCCAATGCCATGTCCCAAACATGGTATTACATGGGATCACA
36283341 CAAAACACTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (48 bp):
TCGATGCCAATGCCATGTCCCAAACATGGTATTACATGGGATCACATC
Found at i:36286485 original size:30 final size:30
Alignment explanation
Indices: 36286451--36286510 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
36286441 ATTTAATACG
36286451 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
36286481 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36286511 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36293271 original size:92 final size:92
Alignment explanation
Indices: 36293144--36293312 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
36293134 GCCCCTAAGT
* * *
36293144 GAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTAACTCAAC
36293209 GAGTTCGGATGCCTAGTTACATTTCAC
66 GAGTTCGGATGCCTAGTTACATTTCAC
*
36293236 GAACTCGGACTCAACTCAATGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTAACTCAA
36293300 CGAGTTCGGATGC
65 CGAGTTCGGATGC
36293313 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 2 0.03
92 70 0.97
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Done.