Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 114 of 255
Found at i:36293305 original size:45 final size:46
Alignment explanation
Indices: 36293139--36293309 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
36293129 AACCCGCCCC
* *
36293139 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* *
36293185 TAAGTGAACTCGGACTC-ACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
36293232 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
36293277 TAAGTGAACTCGGACT-AACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36293310 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 12, Indels: 23
0.74 0.09 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 30 0.29
46 40 0.39
47 17 0.17
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:36298181 original size:19 final size:19
Alignment explanation
Indices: 36298157--36298248 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
36298147 AATCATATCT
*
36298157 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
36298176 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
36298195 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
36298212 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
36298231 TCTAAGATTGTATATCAT
1 TCTAAGATTGCATATCAT
36298249 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
17 17 0.25
19 52 0.75
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:36298190 original size:36 final size:38
Alignment explanation
Indices: 36298150--36298248 Score: 170
Period size: 36 Copynumber: 2.7 Consensus size: 38
36298140 ATTACAAAAT
36298150 CATATC-T-TCTAAGATTGTATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGTATATCATATCTAAGATTG
36298186 CATATCATATCTAAGATTG--TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGTATATCATATCTAAGATTG
36298222 CATATCATATCTAAGATTGTATATCAT
1 CATATCATATCTAAGATTGTATATCAT
36298249 TGAAGATTAT
Statistics
Matches: 59, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
36 42 0.71
37 1 0.02
38 16 0.27
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.40
Consensus pattern (38 bp):
CATATCATATCTAAGATTGTATATCATATCTAAGATTG
Found at i:36310496 original size:36 final size:35
Alignment explanation
Indices: 36310446--36310557 Score: 109
Period size: 35 Copynumber: 3.2 Consensus size: 35
36310436 GTTGGAAGCA
36310446 ATCTACTAGG-TCTATGGAGCGGAATCATGGGAAATG
1 ATCTACT-GGCTCTATGGAGCGGAATCAT-GGAAATG
* **
36310482 ATCTACTGGCTCTATGGAGTGGCGTCATGGAAATG
1 ATCTACTGGCTCTATGGAGCGGAATCATGGAAATG
* * * * **
36310517 ATCCATTGGCTCTAAGGAGCGGCATTGTGGAAATG
1 ATCTACTGGCTCTATGGAGCGGAATCATGGAAATG
*
36310552 GTCTAC
1 ATCTAC
36310558 GGGTTTTACG
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
35 40 0.65
36 22 0.35
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (35 bp):
ATCTACTGGCTCTATGGAGCGGAATCATGGAAATG
Found at i:36316492 original size:25 final size:28
Alignment explanation
Indices: 36316429--36316495 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
36316419 GGAAAGTCCA
*
36316429 CCAAGGACTATCTTATGCGTGAAGTCCT
1 CCAAGGACTATCTTATGCGTGAAGTCAT
*
36316457 CCAA-GAGCTATCTTATGTG-GAA-T-AT
1 CCAAGGA-CTATCTTATGCGTGAAGTCAT
36316482 CCAAGGACTATCTT
1 CCAAGGACTATCTT
36316496 GAAGACGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
25 12 0.34
26 3 0.09
27 5 0.14
28 15 0.43
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (28 bp):
CCAAGGACTATCTTATGCGTGAAGTCAT
Found at i:36320026 original size:21 final size:21
Alignment explanation
Indices: 36320002--36320077 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
36319992 CTAGGAACTA
36320002 TGTGATCTGAACTCATTGAGT
1 TGTGATCTGAACTCATTGAGT
* ** *
36320023 TGTGGTCTGAGTTCA-TGATAT
1 TGTGATCTGAACTCATTGA-GT
36320044 ATGTGCCATCTGAACTCATTGAGT
1 -TGTG--ATCTGAACTCATTGAGT
* *
36320068 TATGGTCTGA
1 TGTGATCTGA
36320078 GTTCATGATG
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
20 3 0.08
21 18 0.45
22 4 0.10
23 3 0.08
24 9 0.22
25 3 0.08
ACGTcount: A:0.22, C:0.14, G:0.25, T:0.38
Consensus pattern (21 bp):
TGTGATCTGAACTCATTGAGT
Found at i:36320062 original size:45 final size:45
Alignment explanation
Indices: 36320006--36320093 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
36319996 GAACTATGTG
*
36320006 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGCC
1 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGCC
*
36320051 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATGTATGTG
1 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTG
36320094 ACACATGTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.39
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGCC
Found at i:36322524 original size:46 final size:48
Alignment explanation
Indices: 36322467--36322639 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 48
36322457 TATTGTGAGC
36322467 TAGT-TAAGA-CATGTCTGGGACAT-GCATCGGCCT-CGAGACGTAAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACGAGACGTAAGT
* * *
36322512 TAGTGTAAGA-CATGTTTGGGATAT-GCATCGGCTACGAGATGT--GT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGACGTAAGT
* * * *
36322556 CAGTGTAAGACCATGTCTAGGACATGGCATCGG-TACAGATACGCTAGAGCC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAC-GAGACG-TA-AG-T
36322607 T-GTGTAAGACCATGTCTGGGACATGGCATCGGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGC
36322640 ATCTTACCCT
Statistics
Matches: 105, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
44 11 0.10
45 20 0.19
46 42 0.40
47 1 0.01
50 31 0.30
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGACGTAAGT
Found at i:36327759 original size:26 final size:27
Alignment explanation
Indices: 36327682--36327763 Score: 130
Period size: 27 Copynumber: 3.1 Consensus size: 27
36327672 CACGCCAAAA
*
36327682 AAAAGAAAGCCTTTGTGGCAATCTATC
1 AAAAGAAAGCCTTTGTGGCAATCTATG
*
36327709 AAAAGAAAGCCTTTGTGGCTATCTATG
1 AAAAGAAAGCCTTTGTGGCAATCTATG
*
36327736 AAAAGAAAGCC-TCGTGGCAATCTATG
1 AAAAGAAAGCCTTTGTGGCAATCTATG
36327762 AA
1 AA
36327764 GGGAATGCAT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 15 0.29
27 36 0.71
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (27 bp):
AAAAGAAAGCCTTTGTGGCAATCTATG
Found at i:36331569 original size:41 final size:40
Alignment explanation
Indices: 36331524--36331658 Score: 135
Period size: 40 Copynumber: 3.4 Consensus size: 40
36331514 CTATCACTTC
* * **
36331524 AGCTCGCATGGGAACTTTCACTAATACACAGCTTATCTGTA
1 AGCTCACATGGGAAC-TTCACTAATACACAACTTATCCATA
* * *
36331565 AGCTCACAAGGGAGCTTCGCTAATACACAACTTATCCATA
1 AGCTCACATGGGAACTTCACTAATACACAACTTATCCATA
** ** *
36331605 AGCTCACATGGGAGTTTCGTTGATACACAACTTATCCATA
1 AGCTCACATGGGAACTTCACTAATACACAACTTATCCATA
* *
36331645 AGCTTACAAGGGAA
1 AGCTCACATGGGAA
36331659 ATTCGCTGAT
Statistics
Matches: 80, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 68 0.85
41 12 0.15
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (40 bp):
AGCTCACATGGGAACTTCACTAATACACAACTTATCCATA
Found at i:36331588 original size:40 final size:40
Alignment explanation
Indices: 36331544--36331671 Score: 157
Period size: 40 Copynumber: 3.2 Consensus size: 40
36331534 GGAACTTTCA
* ** *
36331544 CTAATACACAGCTTATCTGTAAGCTCACAAGGGAGCTTCG
1 CTAATACACAACTTATCCATAAGCTCACAAGGGAGATTCG
* *
36331584 CTAATACACAACTTATCCATAAGCTCACATGGGAGTTTCG
1 CTAATACACAACTTATCCATAAGCTCACAAGGGAGATTCG
* * * *
36331624 TTGATACACAACTTATCCATAAGCTTACAAGGGAAATTCG
1 CTAATACACAACTTATCCATAAGCTCACAAGGGAGATTCG
*
36331664 CTGATACA
1 CTAATACA
36331672 TAACGTATAA
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (40 bp):
CTAATACACAACTTATCCATAAGCTCACAAGGGAGATTCG
Found at i:36335568 original size:23 final size:23
Alignment explanation
Indices: 36335538--36335584 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
36335528 AACAAAAACC
36335538 AATATCATCACCATACCAATCTA
1 AATATCATCACCATACCAATCTA
36335561 AATATCATCACCATACCAATCTA
1 AATATCATCACCATACCAATCTA
36335584 A
1 A
36335585 CACTTATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.26
Consensus pattern (23 bp):
AATATCATCACCATACCAATCTA
Found at i:36336450 original size:39 final size:39
Alignment explanation
Indices: 36336396--36336473 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
36336386 AATCTTAAGG
* *
36336396 AACAAATATGTATAGAGTTTAAATCTCTTAGGACTCTCA
1 AACAAATATGTATAGAGTTTAAATCCCTTAAGACTCTCA
36336435 AACAAATATGTATAGAGTTTAAATCCCTTAAGACTCTCA
1 AACAAATATGTATAGAGTTTAAATCCCTTAAGACTCTCA
36336474 TCTAACTATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.32
Consensus pattern (39 bp):
AACAAATATGTATAGAGTTTAAATCCCTTAAGACTCTCA
Found at i:36341522 original size:15 final size:15
Alignment explanation
Indices: 36341502--36341533 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
36341492 TTTCTCTACT
36341502 GAGTTAATTTTTATA
1 GAGTTAATTTTTATA
*
36341517 GAGTTAATTTTTTTA
1 GAGTTAATTTTTATA
36341532 GA
1 GA
36341534 TAATTGTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (15 bp):
GAGTTAATTTTTATA
Found at i:36343724 original size:16 final size:17
Alignment explanation
Indices: 36343686--36343724 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
36343676 AAAAAATTAT
*
36343686 AAATAAAATATTCAAAA
1 AAATAAAACATTCAAAA
*
36343703 ATATAAAACATT-AAAA
1 AAATAAAACATTCAAAA
36343719 AAATAA
1 AAATAA
36343725 TCAATCAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (17 bp):
AAATAAAACATTCAAAA
Found at i:36345631 original size:43 final size:43
Alignment explanation
Indices: 36345567--36345739 Score: 167
Period size: 43 Copynumber: 4.0 Consensus size: 43
36345557 CATAAGATTT
* *
36345567 TCGATACGTG-TTCTCGTGTAAGACCACGTCTAGGACATTGGCA
1 TCGATATGTGATT-TCGAGTAAGACCACGTCTAGGACATTGGCA
* *
36345610 TCGATATGTGATTTCGAGTAAGACCATGTAT-GGAACATTGGCA
1 TCGATATGTGATTTCGAGTAAGACCACGTCTAGG-ACATTGGCA
* * *
36345653 TC-ATAATTGTGATTT-GTGTAAGACCATGTCTAGGACAGTGGCA
1 TCGAT-A-TGTGATTTCGAGTAAGACCACGTCTAGGACATTGGCA
* * * *
36345696 TCGACATGTGATTAC-ATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGATTTCGA-GTAAGACCACGTCTAGGACATTGGCA
36345739 T
1 T
36345740 TGTACGATAT
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 11 0.10
43 84 0.78
44 13 0.12
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
TCGATATGTGATTTCGAGTAAGACCACGTCTAGGACATTGGCA
Found at i:36345737 original size:86 final size:86
Alignment explanation
Indices: 36345582--36345739 Score: 228
Period size: 86 Copynumber: 1.8 Consensus size: 86
36345572 ACGTGTTCTC
* * * *
36345582 GTGTAAGACCACGTCTAGGACATTGGCATCGATATGTGATTTCGAGTAAGACCATGTATGGAACA
1 GTGTAAGACCACGTCTAGGACAGTGGCATCGACATGTGATTACGAGTAAGACCACGTATGGAACA
36345647 TTGGCATCATAATTGTGATTT
66 TTGGCATCATAATTGTGATTT
* * *
36345668 GTGTAAGACCATGTCTAGGACAGTGGCATCGACATGTGATTAC-ATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCACGTCTAGGACAGTGGCATCGACATGTGATTACGA-GTAAGACCACGTATGGAAC
*
36345732 GTTGGCAT
65 ATTGGCAT
36345740 TGTACGATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
85 1 0.02
86 62 0.98
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (86 bp):
GTGTAAGACCACGTCTAGGACAGTGGCATCGACATGTGATTACGAGTAAGACCACGTATGGAACA
TTGGCATCATAATTGTGATTT
Found at i:36351351 original size:27 final size:27
Alignment explanation
Indices: 36351310--36351361 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
36351300 ACAAGTGAGG
36351310 AAAAAGAGAAAGAGAATGAAAAAGAGC
1 AAAAAGAGAAAGAGAATGAAAAAGAGC
** *
36351337 AAAAAGAGATTGAGAGTGAAAAAGA
1 AAAAAGAGAAAGAGAATGAAAAAGA
36351362 AATTGAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.63, C:0.02, G:0.27, T:0.08
Consensus pattern (27 bp):
AAAAAGAGAAAGAGAATGAAAAAGAGC
Found at i:36352788 original size:12 final size:13
Alignment explanation
Indices: 36352756--36352796 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
36352746 GTTGTAAAGT
36352756 TTTATTTT-TATT-
1 TTTATTTTAT-TTA
36352768 TTTATTTTATTTA
1 TTTATTTTATTTA
36352781 TTTA-TTTATTTA
1 TTTATTTTATTTA
36352793 TTTA
1 TTTA
36352797 CTTAGTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:36354153 original size:28 final size:28
Alignment explanation
Indices: 36354085--36354212 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
36354075 CATGAGATTG
* * **
36354085 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
* *
36354114 GCACTAAATGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36354142 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
36354171 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36354199 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
36354213 GACTTACTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 44 0.51
29 43 0.49
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:36354154 original size:57 final size:57
Alignment explanation
Indices: 36354085--36354213 Score: 179
Period size: 57 Copynumber: 2.3 Consensus size: 57
36354075 CATGAGATTG
36354085 GCACTAAGTGTGCGGGTTTAAAT-TGCATAGCACTAAATGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGGGTTTAAATATGCA-AGCACTAAATGTGCAAGTTTGATTATATA
* * * * * *
36354142 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGGGTTTAAATATGCAAGCACTAAATGTGCAAGTTTGATTATATA
*
36354199 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
36354214 ACTTACTATA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGGGTTTAAATATGCAAGCACTAAATGTGCAAGTTTGATTATATA
Found at i:36367094 original size:21 final size:21
Alignment explanation
Indices: 36367068--36367111 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
36367058 AATAACAAAG
* *
36367068 TTTTTATTTAAATTTATTTAT
1 TTTTTAATTAAATTTATATAT
*
36367089 TTTTTAATTATATTTATATAT
1 TTTTTAATTAAATTTATATAT
36367110 TT
1 TT
36367112 ATATATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTTAATTAAATTTATATAT
Found at i:36368299 original size:11 final size:11
Alignment explanation
Indices: 36368248--36368299 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
36368238 TATCTAAACT
*
36368248 ATAACAACAAA
1 ATAATAACAAA
* *
36368259 ATAATAATAAT
1 ATAATAACAAA
*
36368270 ATAATAATAAA
1 ATAATAACAAA
36368281 ATAATAACAAA
1 ATAATAACAAA
*
36368292 ACAATAAC
1 ATAATAAC
36368300 CAAACAGTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (11 bp):
ATAATAACAAA
Found at i:36368593 original size:31 final size:31
Alignment explanation
Indices: 36368555--36368615 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
36368545 CCTTCGCACA
*
36368555 AACAGCATGACAGAAACTAACAAAGCAAGCC
1 AACAGCATGACAGAAACCAACAAAGCAAGCC
36368586 AACAGCATGACAGAAACCAACAAAGCAAGC
1 AACAGCATGACAGAAACCAACAAAGCAAGC
36368616 AAGCAGGCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.52, C:0.26, G:0.16, T:0.05
Consensus pattern (31 bp):
AACAGCATGACAGAAACCAACAAAGCAAGCC
Found at i:36371280 original size:32 final size:32
Alignment explanation
Indices: 36371239--36371302 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
36371229 CTGAAACATG
36371239 GATGTGTACATAATATGCAGGTTGGAAATGCT
1 GATGTGTACATAATATGCAGGTTGGAAATGCT
*
36371271 GATGTGTACATAATATGTAGGTTGGAAATGCT
1 GATGTGTACATAATATGCAGGTTGGAAATGCT
36371303 CTAACTGATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (32 bp):
GATGTGTACATAATATGCAGGTTGGAAATGCT
Found at i:36380443 original size:15 final size:15
Alignment explanation
Indices: 36380413--36380452 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
36380403 TCATTTACTA
36380413 AATTAA-TTTAAATT
1 AATTAATTTTAAATT
*
36380427 AATTAATTTTTAATT
1 AATTAATTTTAAATT
*
36380442 AAATAATTTTA
1 AATTAATTTTA
36380453 TCAACCCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTAATTTTAAATT
Found at i:36382912 original size:25 final size:25
Alignment explanation
Indices: 36382878--36382926 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
36382868 CTAATCAGAC
* *
36382878 ATTATATTAGTAGATGAACCTAAAT
1 ATTATATTAGTAAACGAACCTAAAT
36382903 ATTATATTAGTAAACGAACCTAAA
1 ATTATATTAGTAAACGAACCTAAA
36382927 CGTGTCCTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (25 bp):
ATTATATTAGTAAACGAACCTAAAT
Found at i:36383232 original size:25 final size:24
Alignment explanation
Indices: 36383204--36383254 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
36383194 ACTTATCGTG
36383204 TTTGATTT-TATTACTAAAAACATTA
1 TTTG-TTTATATTACTAAAAAC-TTA
* *
36383229 TTTGTTTATTTTTCTAAAAACTTA
1 TTTGTTTATATTACTAAAAACTTA
36383253 TT
1 TT
36383255 ATTTTACGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.55
Consensus pattern (24 bp):
TTTGTTTATATTACTAAAAACTTA
Found at i:36392027 original size:27 final size:27
Alignment explanation
Indices: 36391997--36392051 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
36391987 CGTGTTCAGG
36391997 ACAATTAGGTAACATTTAATGTTTTTA
1 ACAATTAGGTAACATTTAATGTTTTTA
36392024 ACAATTAGGTAACATTTAATGTTTTTA
1 ACAATTAGGTAACATTTAATGTTTTTA
36392051 A
1 A
36392052 GTCTATGCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.44
Consensus pattern (27 bp):
ACAATTAGGTAACATTTAATGTTTTTA
Found at i:36397894 original size:79 final size:81
Alignment explanation
Indices: 36397758--36397942 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
36397748 TTGAATGATG
*
36397758 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
36397822 TGTGCAAGATACTA-A
66 TGTGCAAGATAATATA
* * * **
36397837 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
36397899 TTTGTGCGAGTTAATATA
64 TTTGTGCAAGATAATATA
* *
36397917 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36397943 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCAAGATAATATA
Found at i:36397949 original size:40 final size:40
Alignment explanation
Indices: 36397758--36397942 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
36397748 TTGAATGATG
* * ** *
36397758 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTAATAAA
* * * * *
36397798 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTAATAAA
*
36397838 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAATAAA
*
36397877 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAATATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAATA-AA
*
36397918 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36397943 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.27
40 82 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAATAAA
Found at i:36397965 original size:79 final size:79
Alignment explanation
Indices: 36397811--36397965 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
36397801 GGACTAAGAT
* * **
36397811 CCGAAGGCATTTGTGCAAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGATAATAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36397876 ATCCGGGTTAAGTC
66 ATCCGAGTTAAGTC
* * *
36397890 CCGAAGGCATTTGTGCGAGTTAAT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCAAGATAATAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
36397953 TATATCC-AGTTAA
63 TAAATCCGAGTTAA
36397966 ATTTTGAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 37 0.58
80 25 0.39
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGATAATAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGAGTTAAGTC
Found at i:36405875 original size:78 final size:81
Alignment explanation
Indices: 36405727--36405909 Score: 216
Period size: 78 Copynumber: 2.3 Consensus size: 81
36405717 TTGAATGATG
* *
36405727 TCCGGGCTAGGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
36405791 TGTGCGAGATACTA-A
66 TATGCGAGATACTATA
* * * **
36405806 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAT
*
36405868 TTATGCGAGTTACTATA
65 TTATGCGAGATACTATA
* *
36405885 ACCGGGCTATGTCCCGAAGG-ATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36405910 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 38 0.43
79 34 0.38
80 17 0.19
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TATGCGAGATACTATA
Found at i:36405916 original size:39 final size:40
Alignment explanation
Indices: 36405727--36405916 Score: 169
Period size: 39 Copynumber: 4.8 Consensus size: 40
36405717 TTGAATGATG
* * * * * *
36405727 TCCGGGCTAGGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTAAA
* * * *
36405767 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGAGCGAGTTACTAAA
*
36405807 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAA
*
36405846 TCCGGGTTAAGT-CCGAAGGCATTT-ATGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTTACTA-AA
* *
36405886 -CCGGGCTATGTCCCGAAGG-ATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
36405917 AGCTATATCC
Statistics
Matches: 126, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
39 76 0.60
40 42 0.33
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAA
Found at i:36405942 original size:78 final size:78
Alignment explanation
Indices: 36405774--36405932 Score: 191
Period size: 78 Copynumber: 2.0 Consensus size: 78
36405764 ATATCCGGAC
* * **
36405774 TAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGT
1 TAAG-TCCGAAGGCATTTATGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
36405839 TACTAAATCCGGGT
65 TACTAAATCCGGGT
* *
36405853 TAAGTCCGAAGGCATTTATGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGG-ATTTGAACGAG
1 TAAGTCCGAAGGCATTTATGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAG
*
36405916 -TAGCTATATCC-GGT
64 TTA-CTAAATCCGGGT
36405930 TAA
1 TAA
36405933 ATTTCGAAGG
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
77 10 0.14
78 48 0.69
79 12 0.17
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (78 bp):
TAAGTCCGAAGGCATTTATGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTT
ACTAAATCCGGGT
Found at i:36407865 original size:31 final size:31
Alignment explanation
Indices: 36407816--36407878 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
36407806 CTTTCCAAGA
* * *
36407816 AAGACGCTGAATCGAGGTTGATCCGATGGGT
1 AAGACACTAAATCAAGGTTGATCCGATGGGT
36407847 AAGACACTAAATCAAGGTTGATCCGATGGGT
1 AAGACACTAAATCAAGGTTGATCCGATGGGT
36407878 A
1 A
36407879 CTTATATTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (31 bp):
AAGACACTAAATCAAGGTTGATCCGATGGGT
Found at i:36409761 original size:19 final size:20
Alignment explanation
Indices: 36409723--36409763 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
36409713 GGATTAGTTT
*
36409723 AAATTTATCATATTTTAATA
1 AAATTTATCATATTTAAATA
*
36409743 AAATTTATCTTA-TTAAATA
1 AAATTTATCATATTTAAATA
36409762 AA
1 AA
36409764 GTAATAGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
AAATTTATCATATTTAAATA
Found at i:36410432 original size:25 final size:26
Alignment explanation
Indices: 36410404--36410466 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
36410394 TTCTCCTAAA
* *
36410404 TTTCAAATTATTGGATTATTTA-ATT
1 TTTCAAATTATTGAATTATTAATATT
*
36410429 TTTCAATTTATTGAATTATTAATATT
1 TTTCAAATTATTGAATTATTAATATT
36410455 TTATGCAAATTA
1 TT-T-CAAATTA
36410467 AATTTTTGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 19 0.61
26 5 0.16
27 1 0.03
28 6 0.19
ACGTcount: A:0.35, C:0.05, G:0.06, T:0.54
Consensus pattern (26 bp):
TTTCAAATTATTGAATTATTAATATT
Found at i:36425956 original size:40 final size:40
Alignment explanation
Indices: 36425897--36426209 Score: 509
Period size: 40 Copynumber: 7.8 Consensus size: 40
36425887 GAACATTGGA
* *
36425897 ATATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
36425937 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
36425977 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
36426017 ATATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
36426057 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
36426097 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
36426137 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTC
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
36426177 ATATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATG
36426210 TTTGCGGCTG
Statistics
Matches: 253, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 253 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:36431611 original size:40 final size:40
Alignment explanation
Indices: 36431561--36431825 Score: 247
Period size: 40 Copynumber: 6.7 Consensus size: 40
36431551 TTGAATGCTG
* * *
36431561 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTGATTAAA
** * * *
36431601 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGAT-ACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCAAG-TGATTAAA
* *
36431641 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTGATTAAA
* *
36431681 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTGATTAAA
* *
36431721 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTG-TTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAG-TGATTAAA
* * *
36431761 TCCGGGTTATGTCCCGAAGGCATTGTGTG--AGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-TGTGCAAGTGATTAAA
* * *
36431800 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
36431826 AACGAGGAGC
Statistics
Matches: 192, Mismatches: 23, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
38 3 0.02
39 31 0.16
40 144 0.75
41 14 0.07
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTGATTAAA
Found at i:36431698 original size:80 final size:80
Alignment explanation
Indices: 36431561--36431823 Score: 325
Period size: 80 Copynumber: 3.3 Consensus size: 80
36431551 TTGAATGCTG
* * * * * **
36431561 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
36431624 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* *
36431641 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
36431706 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * *
36431721 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
36431785 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
36431800 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36431824 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
79 37 0.23
80 114 0.71
81 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:36431738 original size:120 final size:120
Alignment explanation
Indices: 36431561--36431825 Score: 320
Period size: 120 Copynumber: 2.2 Consensus size: 120
36431551 TTGAATGCTG
* *
36431561 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* **
36431625 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAATTACTAAA
* * * * **
36431681 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * *
36431744 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAATTACTAAA
* *
36431800 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36431826 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
119 35 0.28
120 81 0.66
121 7 0.06
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAATTACTAAA
Found at i:36431843 original size:79 final size:80
Alignment explanation
Indices: 36431614--36431858 Score: 260
Period size: 80 Copynumber: 3.1 Consensus size: 80
36431604 GGACTAAGAT
* * * * ** *** *
36431614 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTA
1 CCGAAGGCATTTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
36431679 AATCCGGGTTAAGTC
66 AATCCGGGTTAAGTC
* * * ** ** *
36431694 CCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
36431759 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
36431774 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
36431838 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
36431852 CCGAAGG
1 CCGAAGG
36431859 TACGTGATTT
Statistics
Matches: 146, Mismatches: 19, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
78 14 0.10
79 48 0.33
80 84 0.58
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:36439139 original size:40 final size:40
Alignment explanation
Indices: 36439095--36439318 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
36439085 AAGTGAATAT
* * * **
36439095 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATGTTAA
*
36439135 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATGTTAA
36439175 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TGTTAA
*
36439215 ATCCGGGTTAAGTCCCGAAGGCATTCATGCGA-ATTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TGTTAA
* * * **
36439255 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATGTTAA
* *
36439294 ATCCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
36439319 TGAACGAGGA
Statistics
Matches: 166, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 33 0.20
40 133 0.80
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATGTTAA
Found at i:36439193 original size:80 final size:80
Alignment explanation
Indices: 36439056--36439318 Score: 293
Period size: 80 Copynumber: 3.3 Consensus size: 80
36439046 TTGAATGCTG
* * * * *
36439056 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
36439118 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGATACTAAA
* * *
36439136 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
36439201 GTGCGA-ATTGTTAAA
66 GTGCGAGA-TACTAAA
* * * * *
36439216 TCCGGGTTAAGTCCCGAAGGCATTCATGCGAATTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
* *
36439280 GTGTGAGTTACTAAA
66 GTGCGAGATACTAAA
*
36439295 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36439319 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
79 35 0.22
80 113 0.72
81 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGATACTAAA
Found at i:36440918 original size:25 final size:25
Alignment explanation
Indices: 36440890--36440959 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
36440880 CTCTTTTAAT
*
36440890 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* * * *
36440915 AACTAGCGCCAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
36440940 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
36440960 GCACTTCCTC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:36441032 original size:20 final size:21
Alignment explanation
Indices: 36441007--36441055 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
36440997 AAATGAATAC
* *
36441007 ATCATGTGCATATCATA-CAT
1 ATCATGTACATATCATATCAA
36441027 ATCATGTACATATCATATCAA
1 ATCATGTACATATCATATCAA
36441048 ATCATGTA
1 ATCATGTA
36441056 TATCAAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (21 bp):
ATCATGTACATATCATATCAA
Found at i:36441036 original size:11 final size:11
Alignment explanation
Indices: 36441007--36441055 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
36440997 AAATGAATAC
*
36441007 ATCATGTGCAT
1 ATCATGTACAT
36441018 ATCA--TACAT
1 ATCATGTACAT
36441027 ATCATGTACAT
1 ATCATGTACAT
* *
36441038 ATCATAT-CAA
1 ATCATGTACAT
36441048 ATCATGTA
1 ATCATGTA
36441056 TATCAAAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
9 8 0.26
10 8 0.26
11 15 0.48
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:36448554 original size:22 final size:22
Alignment explanation
Indices: 36448529--36448604 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
36448519 ACATGCATAT
36448529 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
36448551 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
36448575 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
36448598 ATGTGAT
1 ATGTGAT
36448605 GAATGTGACC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:36448560 original size:47 final size:47
Alignment explanation
Indices: 36448509--36448654 Score: 265
Period size: 47 Copynumber: 3.1 Consensus size: 47
36448499 ATTTTATGAT
36448509 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
36448556 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
* **
36448603 ATGAATGTGACCATGCATATATGTGATAAGGTAGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
36448650 ATGAA
1 ATGAA
36448655 CGTGGAAGTG
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 96 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:36448684 original size:94 final size:94
Alignment explanation
Indices: 36448509--36448694 Score: 259
Period size: 94 Copynumber: 2.0 Consensus size: 94
36448499 ATTTTATGAT
* *
36448509 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCAT
1 ATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCAT
*
36448574 ATATGTGATAAGGCCGAATGGCCAATGTG
66 ATATGTGAGAAGGCCGAATGGCCAATGTG
* * * *
36448603 ATGAATGTGACCATGCATATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGGAA-GTGTA
1 ATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGT-GAACATGCA
* *
36448667 TATATGTGGCGAA-GCCGAATGGCTAATG
65 TATATGT-GAGAAGGCCGAATGGCCAATG
36448695 CGAAATGTGT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
94 75 0.93
95 6 0.07
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
ATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCAT
ATATGTGAGAAGGCCGAATGGCCAATGTG
Found at i:36448689 original size:47 final size:45
Alignment explanation
Indices: 36448509--36448674 Score: 224
Period size: 47 Copynumber: 3.5 Consensus size: 45
36448499 ATTTTATGAT
36448509 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTG-A-ATGCATATATGTGATAAGGCCGAATGGCCAATGTG
36448556 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTG-A-ATGCATATATGTGATAAGGCCGAATGGCCAATGTG
**
36448603 ATGAATGTGACCATGCATATATGTGATAAGGTAGAATGGCCAATGTG
1 ATGAATGTGA--ATGCATATATGTGATAAGGCCGAATGGCCAATGTG
* *
36448650 ATGAACGTGGAAGTGTATATATGTG
1 ATGAATGT-GAA-TGCATATATGTG
36448675 GCGAAGCCGA
Statistics
Matches: 112, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
46 2 0.02
47 108 0.96
48 2 0.02
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (45 bp):
ATGAATGTGAATGCATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:36448732 original size:46 final size:46
Alignment explanation
Indices: 36448678--36448850 Score: 274
Period size: 46 Copynumber: 3.8 Consensus size: 46
36448668 ATATGTGGCG
*
36448678 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
*
36448724 AAGTCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
* *
36448770 AAGCCAAATGGCTAATGCGAAACGTGTATGAGATGGGTATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
* * **
36448816 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
36448851 TGTGTATATA
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 117 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
Found at i:36461402 original size:25 final size:25
Alignment explanation
Indices: 36461373--36461420 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
36461363 TTATAATATG
* *
36461373 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
36461398 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
36461421 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36461487 original size:20 final size:20
Alignment explanation
Indices: 36461464--36461502 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
36461454 TAAACATGGT
36461464 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
36461484 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
36461503 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:36461609 original size:24 final size:23
Alignment explanation
Indices: 36461553--36461699 Score: 195
Period size: 24 Copynumber: 6.2 Consensus size: 23
36461543 GAGGAAGTGA
36461553 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
36461576 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
36461599 CAAAAGGGCTTATGCTCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
36461623 CGAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
36461647 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
36461670 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
36461695 AAAAG
1 AAAAG
36461700 AGGCAAGGCC
Statistics
Matches: 109, Mismatches: 12, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
23 43 0.39
24 65 0.60
25 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:36461622 original size:47 final size:47
Alignment explanation
Indices: 36461553--36461699 Score: 197
Period size: 47 Copynumber: 3.1 Consensus size: 47
36461543 GAGGAAGTGA
*
36461553 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * ** *
36461599 CAAAAGGGCTTATGCTCTAGTTATCGAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
36461647 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
36461695 AAAAG
1 AAAAG
36461700 AGGCAAGGCC
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
47 60 0.70
48 26 0.30
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:36461692 original size:71 final size:71
Alignment explanation
Indices: 36461554--36461693 Score: 235
Period size: 71 Copynumber: 2.0 Consensus size: 71
36461544 AGGAAGTGAA
* * * *
36461554 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCTCTAG
1 AAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
36461619 TTATCG
66 TTATCG
*
36461625 AAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAG
1 AAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
36461690 TTAT
66 TTAT
36461694 TAAAAGAGGC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
AAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
TTATCG
Found at i:36461947 original size:31 final size:31
Alignment explanation
Indices: 36461912--36461975 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36461902 CGTTTACAGT
*
36461912 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
36461943 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36461974 AA
1 AA
36461976 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36464151 original size:29 final size:29
Alignment explanation
Indices: 36464112--36464190 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
36464102 CTTAATAATC
*
36464112 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
36464142 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
36464171 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36464191 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:36474002 original size:37 final size:37
Alignment explanation
Indices: 36473952--36474103 Score: 225
Period size: 37 Copynumber: 4.1 Consensus size: 37
36473942 ACCTTTAGCT
* * *
36473952 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
36473989 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
36474026 CAGG-CAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 C-GGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * * *
36474063 CAGACATACTCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
36474100 CGGA
1 CGGA
36474104 ATATATTTCC
Statistics
Matches: 105, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
36 1 0.01
37 102 0.97
38 2 0.02
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:36474318 original size:47 final size:47
Alignment explanation
Indices: 36474266--36474639 Score: 550
Period size: 47 Copynumber: 8.0 Consensus size: 47
36474256 TTTCACACTA
* * * * *
36474266 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
36474313 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
36474360 GCCATTCGGCCTTATCATATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
36474407 GCCATTCGGCCTCATCACATATATACATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
36474454 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * * *
36474501 GTCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
36474548 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
36474595 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
36474640 AAAATCCTAA
Statistics
Matches: 292, Mismatches: 35, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 292 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:36474566 original size:22 final size:22
Alignment explanation
Indices: 36474541--36474614 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 22
36474531 TCATATTCAC
36474541 CACATTGGCCATTCAGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
*
36474563 CACACATAT-G-CATGCTCA-CATTCAT
1 --CACAT-TGGCCAT--TCAGCCTT-AT
*
36474588 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
36474610 CACAT
1 CACAT
36474615 ATATACACAT
Statistics
Matches: 40, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
22 10 0.25
23 12 0.30
24 12 0.30
25 6 0.15
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (22 bp):
CACATTGGCCATTCAGCCTTAT
Found at i:36479473 original size:28 final size:28
Alignment explanation
Indices: 36479435--36479508 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
36479425 GTTCAAATTG
*
36479435 TATAGCACTAAGTGTGCGAGGTTGATTA
1 TATAGCACTAAGTGTGCGAGGTTGACTA
*
36479463 TATAGCACTAAGTGTGCGAGTTTGACTA
1 TATAGCACTAAGTGTGCGAGGTTGACTA
36479491 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
36479509 GGCTTATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGGTTGACTA
Found at i:36488124 original size:11 final size:11
Alignment explanation
Indices: 36488108--36488144 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
36488098 AAAAAAAAAA
36488108 TTTTGAATTTT
1 TTTTGAATTTT
36488119 TTTTGAATTTT
1 TTTTGAATTTT
36488130 TTTTGAATTTT
1 TTTTGAATTTT
36488141 TTTT
1 TTTT
36488145 TTCAAATTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTGAATTTT
Found at i:36493599 original size:28 final size:29
Alignment explanation
Indices: 36493534--36493632 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
36493524 CATGAGATTG
* *
36493534 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
36493563 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
36493591 GCACTAAGTGTGCGA-GTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
36493619 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36493633 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
27 4 0.06
28 42 0.66
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:36494894 original size:11 final size:11
Alignment explanation
Indices: 36494878--36494902 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36494868 TTGGCCCGAC
36494878 CAAAAATTCTA
1 CAAAAATTCTA
36494889 CAAAAATTCTA
1 CAAAAATTCTA
36494900 CAA
1 CAA
36494903 TATATATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (11 bp):
CAAAAATTCTA
Found at i:36496024 original size:96 final size:96
Alignment explanation
Indices: 36495856--36496129 Score: 336
Period size: 96 Copynumber: 2.9 Consensus size: 96
36495846 GGTGAATTGT
* * * * * *
36495856 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCTATGTCCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGA
* *
36495921 CAAGGTCTTACACTAGCTCTCGTCT-CAATGC
66 CATGGTCTTACACTAGCTCTCAT-TACAATGC
*** * * *
36495952 CGATGCCATGTCCCTGGCATGGTCTTACACTGGCTCTTATAAT-GTGGTCGATGCCATGCCCCAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGCCGATGCCATGTCCCAG
* * *
36496016 ACATGGTCTTACACTGGCTCTCATTACATTGT
65 ACATGGTCTTACACTAGCTCTCATTACAATGC
* * *
36496048 CGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATCGTGGCCAATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGA
36496113 CATGGTCTTACACTAGC
66 CATGGTCTTACACTAGC
36496130 ACCCATATCA
Statistics
Matches: 148, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
95 3 0.02
96 144 0.97
97 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCATTACAATGC
Found at i:36496117 original size:144 final size:144
Alignment explanation
Indices: 36495854--36496126 Score: 347
Period size: 144 Copynumber: 1.9 Consensus size: 144
36495844 AGGGTGAATT
** *
36495854 GTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCTATGTCCCA
1 GTCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCA
* * * * *
36495919 AACAAGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCTGGCATGGTCTTACACTG
66 AACAAGGTCTTACACTAGCTCTCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACACTG
36495984 GCTCTTATAATGTG
131 GCTCTTATAATGTG
* * * * *
36495998 GTCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCAT-TAC-ATTGTCGATGCCATGTTC
1 GTCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCACATGT-CGA-GGCCGATGCCATGTCC
* *
36496061 CAAACATA-GTCTTACACTGGCTCTCATATC-GTGGCCAATGCCATGTCCCAGACATGGTCTTAC
64 CAAACA-AGGTCTTACACTAGCTCTCATATCAAT-GCCAATGCCATGTCCCAGACATGGTCTTAC
36496124 ACT
127 ACT
36496127 AGCACCCATA
Statistics
Matches: 110, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
143 3 0.03
144 106 0.96
145 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (144 bp):
GTCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCA
AACAAGGTCTTACACTAGCTCTCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACACTG
GCTCTTATAATGTG
Found at i:36496138 original size:48 final size:48
Alignment explanation
Indices: 36495856--36496126 Score: 278
Period size: 48 Copynumber: 5.6 Consensus size: 48
36495846 GGTGAATTGT
* * * *
36495856 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
* * * * * *
36495904 CGATGCTATGTCCCAAACAAGGTCTTACACTAGCTCTCGTCTCAAT-GC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC-GTGGC
*** * *
36495952 CGATGCCATGTCCCTGGCATGGTCTTACACTGGCTCTTATAAT-GTGGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGC
* * * * *
36496000 CGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCAT-TACATTGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGTGGC
* *
36496048 CGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
* *
36496096 CAATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAAACATGGTCTTACACT
36496127 AGCACCCATA
Statistics
Matches: 180, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 176 0.98
49 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
Found at i:36504528 original size:36 final size:36
Alignment explanation
Indices: 36504488--36504559 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
36504478 TATTTAAAAA
* *
36504488 ATATATTTTT-ATATTTTTGAATTTTAAAGTTTTTTC
1 ATATATTTTTAAT-TTTTTAAATTATAAAGTTTTTTC
*
36504524 ATATATTTTTAATTTTTTAAATTATAATGTTTTTTC
1 ATATATTTTTAATTTTTTAAATTATAAAGTTTTTTC
36504560 TTTAAATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
36 30 0.94
37 2 0.06
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (36 bp):
ATATATTTTTAATTTTTTAAATTATAAAGTTTTTTC
Found at i:36519461 original size:46 final size:48
Alignment explanation
Indices: 36519357--36519476 Score: 138
Period size: 48 Copynumber: 2.5 Consensus size: 48
36519347 TGTCTTCGAC
** * * *
36519357 ATGGACTTACATGAATTATTCTTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* *
36519405 ATGGGA-TTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 AT-GGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
36519451 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
36519477 CTGTCCTGTC
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
45 3 0.05
46 24 0.39
47 1 0.02
48 31 0.50
49 3 0.05
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:36540082 original size:21 final size:21
Alignment explanation
Indices: 36540058--36540099 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
36540048 AGAGGGAGAC
*
36540058 CACAAAAGAATCTGGGAAATG
1 CACAAAAGAATCTAGGAAATG
36540079 CACAAAAGAATCTAGGAAATG
1 CACAAAAGAATCTAGGAAATG
36540100 GAGAGAGTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.14, G:0.21, T:0.14
Consensus pattern (21 bp):
CACAAAAGAATCTAGGAAATG
Found at i:36551224 original size:41 final size:42
Alignment explanation
Indices: 36551179--36551371 Score: 151
Period size: 43 Copynumber: 4.6 Consensus size: 42
36551169 CCGGCACGAA
* * *
36551179 GCCTGCTAGACTTTAAGTCTGA-ACTCA-TTCACCGGCATTTT
1 GCCTGCTAGACTTGAAGCCCGATA-TCATTTCACCGGCATTTT
* *
36551220 GCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTATA
1 GCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATT-TT
* * * * * * *
36551263 ACCTGCTAGGCCTGACGCCCGATATTATCTCACCGGCATTATA
1 GCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATT-TT
* * * *
36551306 GCCTGCTAGGCCTGAAGCCCGATATTATCTT-A-CGGCATTATA
1 GCCTGCTAGACTTGAAGCCCGATATCAT-TTCACCGGCATT-TT
* *
36551348 GCCTGCTAGGCCTGAAGCCCGATA
1 GCCTGCTAGACTTGAAGCCCGATA
36551372 ATATTATTCA
Statistics
Matches: 135, Mismatches: 13, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
41 21 0.16
42 47 0.35
43 66 0.49
44 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (42 bp):
GCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATTTT
Found at i:36551283 original size:43 final size:43
Alignment explanation
Indices: 36551206--36551403 Score: 251
Period size: 43 Copynumber: 4.6 Consensus size: 43
36551196 TCTGAACTCA
* * *
36551206 TTCACCGGCATT-TTGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTAT
* *
36551248 TTCACCGGCATTATAACCTGCTAGGCCTGACGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTAT
*
36551291 CTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTAT
*
36551334 CTT-A-CGGCATTATAGCCTGCTAGGCCTGAAGCCCGATAATATT
1 -TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTA-T
* * *
36551377 ATTCACCAGC-TTAAAGCTTGCTAGGCC
1 -TTCACCGGCATTATAGCCTGCTAGGCC
36551404 GAGGCCCAAA
Statistics
Matches: 137, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
42 48 0.35
43 69 0.50
44 17 0.12
45 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTAT
Found at i:36551353 original size:85 final size:85
Alignment explanation
Indices: 36551207--36551371 Score: 253
Period size: 85 Copynumber: 1.9 Consensus size: 85
36551197 CTGAACTCAT
* *
36551207 TCACCGGCATTTTGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTATAACCTGCTAG
1 TCACCGGCATTTAGCCTGCTAGGCCTGAAGCCCGATATCATTTCACCGGCATTATAACCTGCTAG
*
36551272 GCCTGACGCCCGATATTATC
66 GCCTGAAGCCCGATATTATC
* *
36551292 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTATCTT-A-CGGCATTATAGCCTGCT
1 TCACCGGCATT-TAGCCTGCTAGGCCTGAAGCCCGATATCAT-TTCACCGGCATTATAACCTGCT
36551355 AGGCCTGAAGCCCGATA
64 AGGCCTGAAGCCCGATA
36551372 ATATTATTCA
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
85 43 0.59
86 28 0.38
87 2 0.03
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (85 bp):
TCACCGGCATTTAGCCTGCTAGGCCTGAAGCCCGATATCATTTCACCGGCATTATAACCTGCTAG
GCCTGAAGCCCGATATTATC
Found at i:36564960 original size:22 final size:22
Alignment explanation
Indices: 36564921--36564962 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
36564911 ATCACTCTTC
* *
36564921 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
36564943 CTCTCCATTTGTTATTCTTT
1 CTCTCCATTTATTATTCTTT
36564963 GCTTCTTTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:36574974 original size:40 final size:40
Alignment explanation
Indices: 36574915--36575130 Score: 294
Period size: 40 Copynumber: 5.4 Consensus size: 40
36574905 AAACCAAGCA
* * *
36574915 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * **
36574954 CCTTCGAGACTTAGCCCGGATATAATAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
36574994 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36575034 CCTTCGGGACTTAGCCCAGA-ATTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
36575074 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
36575114 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
36575131 CGTTATCATC
Statistics
Matches: 156, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 142 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36577468 original size:55 final size:54
Alignment explanation
Indices: 36577338--36577469 Score: 131
Period size: 55 Copynumber: 2.4 Consensus size: 54
36577328 ACGACTGTGT
* * * *
36577338 TAATTTAACAGGTTTGACCA-GGGTGCTAGACACGGGTGTGTCGCACGCCCGTGT
1 TAATTTGACAGGTTTG-CCACGGGTGCCAGACACGGGCGTGTCGCACGCCCGTGC
* * * *
36577392 TAATTTGACAGGTTCAGCCACGGGTTCCAGGCACGGGCGTGTCGCACGCTCGTGC
1 TAATTTGACAGGTT-TGCCACGGGTGCCAGACACGGGCGTGTCGCACGCCCGTGC
** *
36577447 TGTTTTGGCAGGTTTGCCCACGG
1 TAATTTGACAGGTTTG-CCACGG
36577470 CCGTGGCGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
54 17 0.27
55 46 0.73
ACGTcount: A:0.17, C:0.25, G:0.33, T:0.26
Consensus pattern (54 bp):
TAATTTGACAGGTTTGCCACGGGTGCCAGACACGGGCGTGTCGCACGCCCGTGC
Found at i:36580240 original size:41 final size:40
Alignment explanation
Indices: 36580113--36580249 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 40
36580103 AAGCCAAGTA
* * * * *
36580113 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATG
* * *
36580151 CCTTCGGGACATAGCCCGGATATAGTAACTCACACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATG
* *
36580191 CCTTCGGGACTTAGCCCGGA-ACTAGCCACT-AGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGCAACTCA-CAC-AAATG
36580232 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
36580250 ATTATCATCC
Statistics
Matches: 81, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
38 11 0.14
39 18 0.22
40 30 0.37
41 22 0.27
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATG
Found at i:36601224 original size:10 final size:11
Alignment explanation
Indices: 36601192--36601224 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
36601182 AGATAGTGTG
36601192 ATGATGCTCCA
1 ATGATGCTCCA
36601203 ATGATGCTCCA
1 ATGATGCTCCA
36601214 ATGAT-CTCCA
1 ATGATGCTCCA
36601224 A
1 A
36601225 CCTTTGCGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 6 0.27
11 16 0.73
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (11 bp):
ATGATGCTCCA
Found at i:36610700 original size:298 final size:298
Alignment explanation
Indices: 36610164--36610758 Score: 1163
Period size: 298 Copynumber: 2.0 Consensus size: 298
36610154 AATTTCGTAG
*
36610164 GTTCAATGGGTATGTTCATACTCATGCTCAATCTCATGCAACTATATGAATGCATCGACCCCAGA
1 GTTCAATGGGTATGTTCATACTCATGCTCAATCTCATGCAACTATATAAATGCATCGACCCCAGA
36610229 TCAATTAAGGCAACAACACATGTCTTAAAAAGAGAAAAAGTACCCCTGATGACATCAGGAGCAGA
66 TCAATTAAGGCAACAACACATGTCTTAAAAAGAGAAAAAGTACCCCTGATGACATCAGGAGCAGA
36610294 GGCTTCCTCTCGAGCGCGTATTGCATACGTTCTTGCCGAGGCTCAAGCCTCTAATTTTGTAATGT
131 GGCTTCCTCTCGAGCGCGTATTGCATACGTTCTTGCCGAGGCTCAAGCCTCTAATTTTGTAATGT
36610359 CTTTGGCCGTAACTCGACTGCCACTAGCACTTCCAGGAAACCTCGGAGGTCTACCTCGTGCAATA
196 CTTTGGCCGTAACTCGACTGCCACTAGCACTTCCAGGAAACCTCGGAGGTCTACCTCGTGCAATA
36610424 GGAGTACTCGACTTTGGGGCTATATCCACTCCTTTATC
261 GGAGTACTCGACTTTGGGGCTATATCCACTCCTTTATC
36610462 GTTCAATGGGTATGTTCATACTCATGCTCAATCTCATGCAACTATATAAATGCATCGACCCCAGA
1 GTTCAATGGGTATGTTCATACTCATGCTCAATCTCATGCAACTATATAAATGCATCGACCCCAGA
*
36610527 TCAATTAAGGCAACAACACATGTCTTAAAAAGAGAAAAAGTACCCCTGGTGACATCAGGAGCAGA
66 TCAATTAAGGCAACAACACATGTCTTAAAAAGAGAAAAAGTACCCCTGATGACATCAGGAGCAGA
*
36610592 GGCTTCCTCTCGAGCGCGTATTGCATACGTTCTTGCCGGGGCTCAAGCCTCTAATTTTGTAATGT
131 GGCTTCCTCTCGAGCGCGTATTGCATACGTTCTTGCCGAGGCTCAAGCCTCTAATTTTGTAATGT
36610657 CTTTGGCCGTAACTCGACTGCCACTAGCACTTCCAGGAAACCTCGGAGGTCTACCTCGTGCAATA
196 CTTTGGCCGTAACTCGACTGCCACTAGCACTTCCAGGAAACCTCGGAGGTCTACCTCGTGCAATA
36610722 GGAGTACTCGACTTTGGGGCTATATCCACTCCTTTAT
261 GGAGTACTCGACTTTGGGGCTATATCCACTCCTTTAT
36610759 TAGTTCGCTC
Statistics
Matches: 294, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
298 294 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (298 bp):
GTTCAATGGGTATGTTCATACTCATGCTCAATCTCATGCAACTATATAAATGCATCGACCCCAGA
TCAATTAAGGCAACAACACATGTCTTAAAAAGAGAAAAAGTACCCCTGATGACATCAGGAGCAGA
GGCTTCCTCTCGAGCGCGTATTGCATACGTTCTTGCCGAGGCTCAAGCCTCTAATTTTGTAATGT
CTTTGGCCGTAACTCGACTGCCACTAGCACTTCCAGGAAACCTCGGAGGTCTACCTCGTGCAATA
GGAGTACTCGACTTTGGGGCTATATCCACTCCTTTATC
Found at i:36618586 original size:93 final size:93
Alignment explanation
Indices: 36618454--36618623 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
36618444 GCCCTAAGTG
* * *
36618454 AACTCGGACTCAACTCAATGAGCTCAGGCGTTCGTATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
*
36618519 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCAGATGCCTAGTTACATTTCACA
* *
36618547 AACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
36618611 TGAGTTCAGATGC
65 CGAGTTCAGATGC
36618624 TCAACCATCC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
GAGTTCAGATGCCTAGTTACATTTCACA
Found at i:36618616 original size:46 final size:46
Alignment explanation
Indices: 36618448--36618617 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
36618438 AACCCGGCCC
* * * *
36618448 TAAGTGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
* * *
36618494 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATTTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCA-TCCA
*
36618545 -CA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
36618587 TAAGTGAACTCGGACTCAACTCAATGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
36618618 AGATGCTCAA
Statistics
Matches: 99, Mismatches: 13, Indels: 24
0.73 0.10 0.18
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 1 0.01
45 2 0.02
46 52 0.53
47 27 0.27
49 1 0.01
50 2 0.02
51 5 0.05
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:36619075 original size:30 final size:30
Alignment explanation
Indices: 36619041--36619100 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
36619031 ATTTAATACG
36619041 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
*** *
36619071 AACTTTTTCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36619101 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36621180 original size:34 final size:34
Alignment explanation
Indices: 36621105--36621182 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
36621095 AGAAACAGTC
* *
36621105 CAGTATCAGTGTGGGCCTTAGCCTATAGCAATAG
1 CAGTATCAATGTGGGCCTTAGCCCATAGCAATAG
*
36621139 CAATATCAATGTGGGCCTTAGCCCATTA-CAATTA-
1 CAGTATCAATGTGGGCCTTAGCCCA-TAGCAA-TAG
36621173 CAGTATCAAT
1 CAGTATCAAT
36621183 AATGCAACAG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
34 34 0.89
35 4 0.11
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (34 bp):
CAGTATCAATGTGGGCCTTAGCCCATAGCAATAG
Found at i:36624389 original size:27 final size:27
Alignment explanation
Indices: 36624358--36624535 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
36624348 TAAATTGTAC
36624358 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36624385 TGCACTAAGTGTGCGAAGTGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36624411 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36624439 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36624467 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
36624494 AGCACTAGGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36624521 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36624536 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36624499 original size:82 final size:81
Alignment explanation
Indices: 36624359--36624514 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
36624349 AAATTGTACA
* *
36624359 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAGTGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAGTGAATACGATGCACTAAGTGT
36624424 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
36624440 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAGGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAGTGAATACGAT-GCACTAAGT
*
36624504 GTGCGAGTTGA
64 GTGCGAATTGA
36624515 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAGTGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36624526 original size:82 final size:81
Alignment explanation
Indices: 36624355--36624535 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
36624345 GATTAAATTG
* *
36624355 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAGTGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAGTGAATACGATGCACTAA
36624420 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36624436 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAGTGAATACGAT-GCACT
* * **
36624500 AGGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36624518 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36624536 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAGTGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36632513 original size:27 final size:27
Alignment explanation
Indices: 36632482--36632659 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36632472 TAAATTGTAC
36632482 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36632509 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36632535 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36632563 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36632591 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36632618 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36632645 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36632660 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36632596 original size:82 final size:81
Alignment explanation
Indices: 36632483--36632638 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36632473 AAATTGTACA
* *
36632483 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36632547 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36632564 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36632629 TGCGAGTTGA
65 TGCGAATTGA
36632639 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36632650 original size:82 final size:81
Alignment explanation
Indices: 36632479--36632659 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36632469 GATTAAATTG
* *
36632479 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36632544 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36632560 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36632624 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36632642 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36632660 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36646942 original size:40 final size:40
Alignment explanation
Indices: 36646885--36647069 Score: 289
Period size: 40 Copynumber: 4.6 Consensus size: 40
36646875 CGGATGATAA
36646885 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
36646925 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
36646965 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTGCTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * **
36647005 CCGGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
36647045 CCGGGCTAAATCCTGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36647070 AGTGAGTAGC
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:36647075 original size:40 final size:40
Alignment explanation
Indices: 36646885--36647102 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
36646875 CGGATGATAA
*
36646885 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36646925 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
36646965 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTGCTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
36647005 CCGGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
36647045 CCGGGCTAAATCCTGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
36647085 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36647103 TACTTGGTTG
Statistics
Matches: 160, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.10
40 144 0.90
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36650638 original size:13 final size:13
Alignment explanation
Indices: 36650620--36650647 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36650610 GTGGCGATGG
36650620 AACTCTACAATAC
1 AACTCTACAATAC
36650633 AACTCTACAATAC
1 AACTCTACAATAC
36650646 AA
1 AA
36650648 TCAGGAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (13 bp):
AACTCTACAATAC
Found at i:36661125 original size:24 final size:24
Alignment explanation
Indices: 36661095--36661142 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36661085 TTGTGATTGA
36661095 CTTTTTGGATGTATTCGACAAAGT
1 CTTTTTGGATGTATTCGACAAAGT
36661119 CTTTTTGGATGTATTCGACAAAGT
1 CTTTTTGGATGTATTCGACAAAGT
36661143 TTTGACAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (24 bp):
CTTTTTGGATGTATTCGACAAAGT
Found at i:36665098 original size:54 final size:54
Alignment explanation
Indices: 36665016--36665125 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
36665006 GTGAAAGGAA
36665016 TTGACATCAGCAAAGGTATAGATAGGGGAAGCTCAAGCTCAAATTGTATGATGG
1 TTGACATCAGCAAAGGTATAGATAGGGGAAGCTCAAGCTCAAATTGTATGATGG
* *
36665070 TTGACATCAGCAAAGTTATAGATAGGGGAAGCTCAAGCTCAATTTGTATGATGG
1 TTGACATCAGCAAAGGTATAGATAGGGGAAGCTCAAGCTCAAATTGTATGATGG
36665124 TT
1 TT
36665126 TTCTTTTCTT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (54 bp):
TTGACATCAGCAAAGGTATAGATAGGGGAAGCTCAAGCTCAAATTGTATGATGG
Found at i:36666783 original size:43 final size:44
Alignment explanation
Indices: 36666640--36666796 Score: 196
Period size: 43 Copynumber: 3.6 Consensus size: 44
36666630 TGTGTTATCG
* * * * *
36666640 TGTAAGACAACGTCTGGAACGTTGGCATCGATTTGTGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATCTGATTTACA
* * *
36666684 TGTAAGACCATGTTTGGGACATTGGCATCG-TATTTGATTT-CA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATCTGATTTACA
*
36666726 TGTAAGACCCTGTCTGGGACAG-TGGCATCGATATCT-ATTTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGATATCTGATTTACA
36666769 TGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
36666797 TGTATAAGCT
Statistics
Matches: 97, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
42 33 0.34
43 39 0.40
44 25 0.26
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATATCTGATTTACA
Found at i:36677496 original size:37 final size:37
Alignment explanation
Indices: 36677437--36677545 Score: 166
Period size: 37 Copynumber: 2.9 Consensus size: 37
36677427 AGCTCAGATG
*
36677437 AAATCTCCACACG-AAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAA-TCATCGGGTCTTACCCGGACA
*
36677474 AAATCTCCACACGTAATCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAATCATCGGGTCTTACCCGGACA
* *
36677511 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAATCATCGGGTCTTACCCGGA
36677546 ATATATTTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
37 64 0.97
38 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAATCATCGGGTCTTACCCGGACA
Found at i:36677744 original size:48 final size:48
Alignment explanation
Indices: 36677686--36677972 Score: 493
Period size: 48 Copynumber: 5.9 Consensus size: 48
36677676 ATATACACAC
*
36677686 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
36677734 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* **
36677782 ATCTCATATATATATTTCACGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
36677832 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
36677880 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
36677928 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
36677973 TACACTTCCA
Statistics
Matches: 229, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
48 184 0.80
50 45 0.20
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:36677974 original size:146 final size:147
Alignment explanation
Indices: 36677671--36677977 Score: 494
Period size: 146 Copynumber: 2.1 Consensus size: 147
36677661 GGTCATTCGG
* *
36677671 CCACAATATACACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
1 CCAC-ATATATACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
*
36677736 CTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCA
65 CTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCA
** *
36677801 CGTTAGCCATTCGGCTTTA
129 CACTAGCCATTCAGCTTTA
* *
36677820 CCAC--ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
1 CCACATATATACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATC
*
36677883 TCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACA
66 TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACA
36677947 CTAGCCATTCAGCTTTA
131 CTAGCCATTCAGCTTTA
36677964 CCACATATATACAC
1 CCACATATATACAC
36677978 TTCCACGTTT
Statistics
Matches: 146, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
144 31 0.21
146 111 0.76
149 4 0.03
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.34
Consensus pattern (147 bp):
CCACATATATACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATC
TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACA
CTAGCCATTCAGCTTTA
Found at i:36677976 original size:98 final size:96
Alignment explanation
Indices: 36677686--36677972 Score: 502
Period size: 98 Copynumber: 3.0 Consensus size: 96
36677676 ATATACACAC
* *
36677686 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
36677751 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* *
36677782 ATCTCATATATATATTTCACGTTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
36677847 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACACTAGCCATTCGGCTTTACCACATATACAT
36677880 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
36677945 CACTAGCCATTCAGCTTTACCACATATA
66 CACTAGCCATTCGGCTTTACCACATATA
36677973 TACACTTCCA
Statistics
Matches: 180, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
96 89 0.49
98 91 0.51
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (96 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACAT
Found at i:36678016 original size:47 final size:47
Alignment explanation
Indices: 36677989--36678182 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
36677979 TCCACGTTTG
** * * *
36677989 TCACATTGGCCATTTTGCCTTATCACATATTTGCATGTTCTCATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTCCACATTCA
*
36678036 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTCCACATTCA
* *
36678083 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTCCACATTCA
* * * ** *
36678130 TCACATTGGTCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTCCACATTCA
36678177 TCACAT
1 TCACAT
36678183 AAAATCCTAA
Statistics
Matches: 136, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 136 1.00
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.36
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTCCACATTCA
Found at i:36678063 original size:22 final size:22
Alignment explanation
Indices: 36678035--36678109 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
36678025 GTTCTCATTC
36678035 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
36678057 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36678081 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36678104 ATCACA
1 ATCACA
36678110 CATATGCATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36678066 original size:94 final size:95
Alignment explanation
Indices: 36677950--36678182 Score: 294
Period size: 94 Copynumber: 2.5 Consensus size: 95
36677940 TTTCACACTA
* * * * ** **
36677950 GCCATTCAGCTTTACCACATATATACACT-TCCACGTTTGTCACATTGGCCATTTTGCCTTATCA
1 GCCATTCGGCCTTATCACATATATACACTGTCCACATTCATCACATTGGCCATTCGGCCTTATCA
* * *
36678014 CATATTTGCATGTTCTCATTCATCACATTG
66 CACATATGCATGTTCACATTCATCACATTG
* *
36678044 GCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 GCCATTCGGCCTTATCACATATATACACTGTCCACATTCATCACATTGGCCATTCGGCCTTATCA
36678108 CACATATGCATGTTCACATTCATCACATTG
66 CACATATGCATGTTCACATTCATCACATTG
* *
36678138 GTCATTCGGCCTTATCTCATATATACACAT-T-CACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATACAC-TGTCCACATTCATCACAT
36678183 AAAATCCTAA
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
93 1 0.01
94 117 0.98
95 1 0.01
96 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.36
Consensus pattern (95 bp):
GCCATTCGGCCTTATCACATATATACACTGTCCACATTCATCACATTGGCCATTCGGCCTTATCA
CACATATGCATGTTCACATTCATCACATTG
Found at i:36682125 original size:46 final size:47
Alignment explanation
Indices: 36682010--36682138 Score: 179
Period size: 46 Copynumber: 2.8 Consensus size: 47
36682000 GTGTGAATAA
* * * *
36682010 TACCTTGATTTGGCTACAGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGAGAGAAGT
* * *
36682057 TACCTTGATTTGGCTACGGGCCATGGTATAGG-ACTCTGGGATAAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGAGAGAAGT
*
36682103 TACCTTGATTTGGCTATAGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACT
36682139 TATCGATTGT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 39 0.54
47 33 0.46
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGAGAGAAGT
Found at i:36684577 original size:14 final size:14
Alignment explanation
Indices: 36684558--36684584 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36684548 AAAGAACAAG
36684558 ATTAAATCTGGAAA
1 ATTAAATCTGGAAA
36684572 ATTAAATCTGGAA
1 ATTAAATCTGGAA
36684585 TAAGAACCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (14 bp):
ATTAAATCTGGAAA
Found at i:36694072 original size:22 final size:22
Alignment explanation
Indices: 36694044--36694088 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
36694034 GTGAAATATG
36694044 TGTGGAAATGAAGTATGACATA
1 TGTGGAAATGAAGTATGACATA
*
36694066 TGTGGAAATGAAGTATGAGATA
1 TGTGGAAATGAAGTATGACATA
36694088 T
1 T
36694089 ATGCAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.02, G:0.29, T:0.29
Consensus pattern (22 bp):
TGTGGAAATGAAGTATGACATA
Found at i:36694096 original size:22 final size:22
Alignment explanation
Indices: 36694049--36694096 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
36694039 ATATGTGTGG
* *
36694049 AAATGAAGTATGACATATGTGG
1 AAATGAAGTATGACATATATGC
*
36694071 AAATGAAGTATGAGATATATGC
1 AAATGAAGTATGACATATATGC
36694093 AAAT
1 AAAT
36694097 AAAGGAGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.46, C:0.04, G:0.23, T:0.27
Consensus pattern (22 bp):
AAATGAAGTATGACATATATGC
Found at i:36695852 original size:19 final size:18
Alignment explanation
Indices: 36695824--36695859 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
36695814 TAAAAAATTA
36695824 AAAGAAAAGAAAAAGAAC
1 AAAGAAAAGAAAAAGAAC
36695842 AAAGAAGAAGAAAAAGAA
1 AAAGAA-AAGAAAAAGAA
36695860 GAGTAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (18 bp):
AAAGAAAAGAAAAAGAAC
Found at i:36712099 original size:48 final size:46
Alignment explanation
Indices: 36712028--36712189 Score: 166
Period size: 46 Copynumber: 3.5 Consensus size: 46
36712018 AGCTGACATG
* *
36712028 ATGTCCCAAACAGGTCTTACACTAGCTTGTATATCTCGAGGTCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTT-TATATCT-GAGGTCGATGC
* * * * *
36712076 ATGTCCCAGACATGTCTTACACTAGCTCT-CATCTTAATGTCGATAC
1 ATGTCCCAGACATGTCTTACACTAGCTTTATATC-TGAGGTCGATGC
* * * * *
36712122 ATGTCCCAGATATGTCTTACACTGGCTCTTATA-ATGTGGTCGGTGC
1 ATGTCCCAGACATGTCTTACACTAGCT-TTATATCTGAGGTCGATGC
36712168 ATGTCCCAGACATGTCTTACAC
1 ATGTCCCAGACATGTCTTACAC
36712190 CAGCACACAT
Statistics
Matches: 93, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
46 64 0.69
47 3 0.03
48 26 0.28
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTAGCTTTATATCTGAGGTCGATGC
Found at i:36715816 original size:9 final size:9
Alignment explanation
Indices: 36715804--36715829 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
36715794 ATACGGGCCA
36715804 AAATGGGCT
1 AAATGGGCT
36715813 AAATGGGCT
1 AAATGGGCT
36715822 AAATGGGC
1 AAATGGGC
36715830 CCGATGGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.35, T:0.19
Consensus pattern (9 bp):
AAATGGGCT
Found at i:36715966 original size:29 final size:29
Alignment explanation
Indices: 36715930--36716021 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 29
36715920 TAGACCCAAC
36715930 GGGCCATATAAATGTGATTTGGGCCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
* * *
36715959 GGGCCATATACAGGTGATTTGGGGCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
* * * * * *
36715988 AGGCTATATGAATATGA-ATGGGCTTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
36716016 GGGCCA
1 GGGCCA
36716022 GATACAGGTA
Statistics
Matches: 49, Mismatches: 14, Indels: 1
0.77 0.22 0.02
Matches are distributed among these distances:
28 12 0.24
29 37 0.76
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.28
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGGGCCTAAT
Found at i:36726066 original size:46 final size:46
Alignment explanation
Indices: 36725999--36726176 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
36725989 TGTAACCCGC
* * *
36725999 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
36726045 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * **
36726091 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
36726138 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
36726177 CTCAACCATC
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
46 71 0.67
47 35 0.33
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:36726115 original size:93 final size:93
Alignment explanation
Indices: 36726007--36726177 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
36725997 GCCCATAAGT
***
36726007 GAACTCAGACTCAACTCAACGAGTTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36726072 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
36726100 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36726165 CGAGCTCGGATGC
66 CGAGCTCGGATGC
36726178 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:36731699 original size:93 final size:93
Alignment explanation
Indices: 36731571--36731741 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
36731561 GCCCATAAGT
* *
36731571 GAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36731636 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
36731664 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36731729 CGAGCTCGGATGC
66 CGAGCTCGGATGC
36731742 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:36731738 original size:46 final size:46
Alignment explanation
Indices: 36731563--36731738 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
36731553 TGTAACCCGC
* * *
36731563 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
36731609 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
36731655 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
36731702 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
36731739 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:36736158 original size:27 final size:27
Alignment explanation
Indices: 36736128--36736184 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
36736118 ATGATGTATG
36736128 AATATGTAACCTTACCAATGTGGTGAA
1 AATATGTAACCTTACCAATGTGGTGAA
36736155 AATATGTAACCTTACCAATGTGGTGAA
1 AATATGTAACCTTACCAATGTGGTGAA
36736182 AAT
1 AAT
36736185 GAATTAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (27 bp):
AATATGTAACCTTACCAATGTGGTGAA
Found at i:36738331 original size:58 final size:59
Alignment explanation
Indices: 36738255--36738365 Score: 179
Period size: 58 Copynumber: 1.9 Consensus size: 59
36738245 AAAAGGAAAG
* *
36738255 GATAAAAATAACATATATTAAATACTTTATTTTATTTATTTTTCAAACAAAACCCAAAA
1 GATAAAAATAACATATATTAAATACTTGATTTTATTTATTTTTAAAACAAAACCCAAAA
* *
36738314 GATAAAAA-ATCATATATTAATTACTTGATTTTATTTATTTTTAAAACAAAAC
1 GATAAAAATAACATATATTAAATACTTGATTTTATTTATTTTTAAAACAAAAC
36738366 TCATTTAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
58 40 0.83
59 8 0.17
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.40
Consensus pattern (59 bp):
GATAAAAATAACATATATTAAATACTTGATTTTATTTATTTTTAAAACAAAACCCAAAA
Found at i:36741175 original size:20 final size:20
Alignment explanation
Indices: 36741141--36741187 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
36741131 TTGAAAGTGG
36741141 GTACTTATT-TTTACCGTTA
1 GTACTTATTCTTTACCGTTA
36741160 GTACTTATTCTTTACCGTTA
1 GTACTTATTCTTTACCGTTA
36741180 --ACTTATTC
1 GTACTTATTC
36741188 AACTGACGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.30
19 9 0.33
20 10 0.37
ACGTcount: A:0.21, C:0.19, G:0.09, T:0.51
Consensus pattern (20 bp):
GTACTTATTCTTTACCGTTA
Done.