Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 115 of 255
Found at i:36746542 original size:60 final size:59
Alignment explanation
Indices: 36746445--36746584 Score: 217
Period size: 60 Copynumber: 2.3 Consensus size: 59
36746435 TAGAGTTTAA
* * *
36746445 ATTTAGTCTGGACTGGTAATTTAGATCCGAGCGCATTAAGGGTGTTTTTCGTTATAAGGG
1 ATTTAGCCT-GACTGGTAATTCAGATCCGAGCGCATTAAGGGTGTTTGTCGTTATAAGGG
*
36746505 ATTTAGCCTAGACTGGTAATTCAGATCCGAGCTCATTAAGGGTGTTTGTCGTTATAAGGG
1 ATTTAGCCT-GACTGGTAATTCAGATCCGAGCGCATTAAGGGTGTTTGTCGTTATAAGGG
36746565 ATTTAGCCTGAACTGGTAAT
1 ATTTAGCCTG-ACTGGTAAT
36746585 CCCAACATCA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
59 1 0.01
60 73 0.99
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (59 bp):
ATTTAGCCTGACTGGTAATTCAGATCCGAGCGCATTAAGGGTGTTTGTCGTTATAAGGG
Found at i:36747685 original size:43 final size:43
Alignment explanation
Indices: 36747624--36747708 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
36747614 AATCAATCAC
36747624 ACAAAAATCGTGCTGTAAAATTTCAATCAATTTAAAAGTTTTT
1 ACAAAAATCGTGCTGTAAAATTTCAATCAATTTAAAAGTTTTT
36747667 ACAAAAATCGTGCTGTAAAATTTCAATCAATTTAAAAGTTTT
1 ACAAAAATCGTGCTGTAAAATTTCAATCAATTTAAAAGTTTT
36747709 CTTTTCACAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.36
Consensus pattern (43 bp):
ACAAAAATCGTGCTGTAAAATTTCAATCAATTTAAAAGTTTTT
Found at i:36749237 original size:40 final size:40
Alignment explanation
Indices: 36749192--36749415 Score: 213
Period size: 39 Copynumber: 5.7 Consensus size: 40
36749182 CACCAACACA
* * * *
36749192 AAGCCTATGGGTCTTTAAGCCCGGATATAGTACCAGTACG
1 AAGCCTGTGGGTCTTTAAGCCCGGATATAATTCCAGCACG
** * * * * *
36749232 AAGCCTG-CAGACCTTAAGTCCGGATATAGTACCAGCACG
1 AAGCCTGTGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* * * *
36749271 AAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGTGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* * * *
36749310 AAGCCTG-CGGACCTTAAGTCCGGATATAATTCCAGCACG
1 AAGCCTGTGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* *
36749349 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCA-T
1 AAGCCTGTGGGTCTTTAAGCCCGGATATAATTCCAGCACG
*
36749388 ATAGCCTGTGGGTTTTTAAGCCCGGATA
1 A-AGCCTGTGGGTCTTTAAGCCCGGATA
36749416 CACATCAAAT
Statistics
Matches: 155, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
38 2 0.01
39 96 0.62
40 57 0.37
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.23
Consensus pattern (40 bp):
AAGCCTGTGGGTCTTTAAGCCCGGATATAATTCCAGCACG
Found at i:36749255 original size:39 final size:39
Alignment explanation
Indices: 36749206--36749386 Score: 236
Period size: 39 Copynumber: 4.6 Consensus size: 39
36749196 CTATGGGTCT
* * * *
36749206 TTAAGCCCGGATATAGTACCAGTACGAAGCCTGCAGACC
1 TTAAGTCCGGATATAATACCAGCACGAAGCCTGCGGACC
* *
36749245 TTAAGTCCGGATATAGTACCAGCACGAAGCCTGCGGATC
1 TTAAGTCCGGATATAATACCAGCACGAAGCCTGCGGACC
* *
36749284 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
1 TTAAGTCCGGATATAATACCAGCACGAAGCCTGCGGACC
* * *
36749323 TTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGGTCT
1 TTAAGTCCGGATATAATACCAGCACGAAGCCTGC-GGACC
* *
36749363 TTAAGCCCGGATATAATTCCAGCA
1 TTAAGTCCGGATATAATACCAGCA
36749387 TATAGCCTGT
Statistics
Matches: 129, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 103 0.80
40 26 0.20
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (39 bp):
TTAAGTCCGGATATAATACCAGCACGAAGCCTGCGGACC
Found at i:36749311 original size:78 final size:79
Alignment explanation
Indices: 36749203--36749386 Score: 280
Period size: 78 Copynumber: 2.3 Consensus size: 79
36749193 AGCCTATGGG
* * * *
36749203 TCTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCAGACCTTAAGTCCGGATATAGTACCAGC
1 TCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATATAATACCAGC
36749268 ACGAAGCCTGCGGA
66 ACGAAGCCTGCGGA
* * * *
36749282 TC-TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGC
1 TCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATATAATACCAGC
*
36749346 ACGAAGCCTGCGGG
66 ACGAAGCCTGCGGA
36749360 TCTTTAAGCCCGGATATAATTCCAGCA
1 TCTTTAAGCCCGGATATAATTCCAGCA
36749387 TATAGCCTGT
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 69 0.74
79 24 0.26
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (79 bp):
TCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATATAATACCAGC
ACGAAGCCTGCGGA
Found at i:36751960 original size:55 final size:55
Alignment explanation
Indices: 36751856--36751970 Score: 131
Period size: 55 Copynumber: 2.1 Consensus size: 55
36751846 CAAAGTTGTA
* * * *
36751856 CACGGGTAGGCCGCACGGGCGTGCACCATGGCCGTGTTTAAAAGACAGTGTCGTC
1 CACGGGCAGGCAGCACGGGCGTGCACCATGGCCGTGTTGAAAAGACAGTGTCGCC
* ** ** * *
36751911 CACGGGCAGGCAGCACGGGTGTGTGCCATGGCCGTGTTGATGAGTCAGTGTTGCC
1 CACGGGCAGGCAGCACGGGCGTGCACCATGGCCGTGTTGAAAAGACAGTGTCGCC
36751966 CACGG
1 CACGG
36751971 CTGAAGAGCA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.17, C:0.26, G:0.37, T:0.19
Consensus pattern (55 bp):
CACGGGCAGGCAGCACGGGCGTGCACCATGGCCGTGTTGAAAAGACAGTGTCGCC
Found at i:36753278 original size:19 final size:19
Alignment explanation
Indices: 36753256--36753293 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
36753246 TTTTTAATAT
36753256 TATATATATTAT-TTTTTAA
1 TATAT-TATTATATTTTTAA
*
36753275 TATATTTTTATATTTTTAA
1 TATATTATTATATTTTTAA
36753294 AAATTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TATATTATTATATTTTTAA
Found at i:36753303 original size:18 final size:19
Alignment explanation
Indices: 36753264--36753305 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
36753254 ATTATATATA
* *
36753264 TTAT-TTTTTAATATATTT
1 TTATATTTTTAATAAATTG
36753282 TTATATTTTTAA-AAATTG
1 TTATATTTTTAATAAATTG
36753300 TTATAT
1 TTATAT
36753306 GAGTATATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TTATATTTTTAATAAATTG
Found at i:36757026 original size:238 final size:235
Alignment explanation
Indices: 36756591--36757132 Score: 636
Period size: 238 Copynumber: 2.3 Consensus size: 235
36756581 TCCTGAATAA
*
36756591 TTAAACATTATAATATCATGTAATACTAT-ATTCTTTCCATTATAATCTATATTATC-ATAAT--
1 TTAAACATTATAATATCATGTAATACTATAATT-TTT-TATTATAATCTATATTA-CAATAATAG
* *
36756652 TACATATAATAGTAGTACATTATATATTATATATTATTTATTATTATACTAGTTGAAATGTGCTC
63 TATATATAATAGTAGTACATTATATATTATATATTATTTATTATTATACTAGTTGAAATATGCTC
* * * *
36756717 TAAGCCTCTACACTTTCCATACATTTGAAAGTTAACCCTCCTAATATAGTATATAATGCTATATA
128 CAAGCCTCAACACTTTCCATACATTTGAAAGTTAACCATCCTAATATAGTATATAATACTATATA
*
36756782 ATATCATATAGTGTATAATATATTAATAGTTTATATATATGAATCAAT-G
193 ATATC--ATA-T-CAT-ATAT-TT-ATAGTTTATATATATGAATCAATGG
* *
36756831 TTTAACATTATAATATCATGTAATACTATAATTTTTTGTTATAATCTATATTACAATAATAGTCA
1 TTAAACATTATAATATCATGTAATACTATAATTTTTTATTATAATCTATATTACAATAATAGT-A
36756896 TATATAATAGTAGTACATTATATA-T-TAT-TT-TTTATTATTATACTAGTTGAAATATGCTCCA
65 TATATAATAGTAGTACATTATATATTATATATTATTTATTATTATACTAGTTGAAATATGCTCCA
* * * * * * * * *
36756957 AGTCC-CAATATTTTTCATACATTTGAACGTTAGCCATCTTATTATATTATATAATACTATATCA
130 AG-CCTCAACACTTTCCATACATTTGAAAGTTAACCATCCTAATATAGTATATAATACTATATAA
* * * *
36757021 TATCATATCATATATTTATAGTTTATGTATTTGTATTAATGG
194 TATCATATCATATATTTATAGTTTATATATATGAATCAATGG
* * ** * *
36757063 TTAAACATTATAATATCATGAAATGCTATACCTTTTTATTATAATCTATGTTATAATAATAGTTA
1 TTAAACATTATAATATCATGTAATACTATAATTTTTTATTATAATCTATATTACAATAATAG-TA
36757128 TATAT
65 TATAT
36757133 GTAATAATAT
Statistics
Matches: 263, Mismatches: 31, Indels: 24
0.83 0.10 0.08
Matches are distributed among these distances:
231 19 0.07
232 63 0.24
233 5 0.02
234 2 0.01
235 1 0.00
236 3 0.01
238 83 0.32
239 24 0.09
240 34 0.13
241 5 0.02
242 24 0.09
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (235 bp):
TTAAACATTATAATATCATGTAATACTATAATTTTTTATTATAATCTATATTACAATAATAGTAT
ATATAATAGTAGTACATTATATATTATATATTATTTATTATTATACTAGTTGAAATATGCTCCAA
GCCTCAACACTTTCCATACATTTGAAAGTTAACCATCCTAATATAGTATATAATACTATATAATA
TCATATCATATATTTATAGTTTATATATATGAATCAATGG
Found at i:36760333 original size:18 final size:18
Alignment explanation
Indices: 36760305--36760341 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
36760295 ATATGGCCAA
36760305 GGCCAATATGGGCCGTGTG
1 GGCCAATATGGG-CGTGTG
36760324 GGCC-ATATGGGCGTGTG
1 GGCCAATATGGGCGTGTG
36760341 G
1 G
36760342 ACCCATACCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 7 0.39
19 4 0.22
ACGTcount: A:0.14, C:0.19, G:0.46, T:0.22
Consensus pattern (18 bp):
GGCCAATATGGGCGTGTG
Found at i:36760347 original size:18 final size:18
Alignment explanation
Indices: 36760305--36760348 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
36760295 ATATGGCCAA
*
36760305 GGCCAATATGGGCCGTGT
1 GGCCCATATGGGCCGTGT
*
36760323 GGGCCATATGGG-CGTGT
1 GGCCCATATGGGCCGTGT
36760340 GGACCCATA
1 GG-CCCATA
36760349 CCGGCAGGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.18, C:0.23, G:0.39, T:0.20
Consensus pattern (18 bp):
GGCCCATATGGGCCGTGT
Found at i:36762797 original size:17 final size:17
Alignment explanation
Indices: 36762771--36762805 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
36762761 GAACGAATGT
36762771 ATGCTATAAAGGCTCAA
1 ATGCTATAAAGGCTCAA
*
36762788 ATGCTCTAAAGGCTCAA
1 ATGCTATAAAGGCTCAA
36762805 A
1 A
36762806 ATCTCACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (17 bp):
ATGCTATAAAGGCTCAA
Found at i:36763408 original size:7 final size:6
Alignment explanation
Indices: 36763384--36763474 Score: 55
Period size: 6 Copynumber: 15.0 Consensus size: 6
36763374 AAAGAAGTTT
* * * *
36763384 AATAAC AATAAA CAA-AAA TATAAA AATAAA TA-AAA AATAAA ACTAAA
1 AATAAA AATAAA -AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* *
36763431 AA-GAA AATAAGA AATAAA ATAAAAA AAGCTAAA AAT-AA AATAAA
1 AATAAA AATAA-A AATAAA A-ATAAA AA--TAAA AATAAA AATAAA
36763475 GGAGATGGAC
Statistics
Matches: 65, Mismatches: 11, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
5 14 0.22
6 33 0.51
7 13 0.20
8 5 0.08
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:36763411 original size:18 final size:16
Alignment explanation
Indices: 36763384--36763474 Score: 76
Period size: 17 Copynumber: 5.4 Consensus size: 16
36763374 AAAGAAGTTT
*
36763384 AATAACAATAAACAAAA
1 AATAAAAATAAA-AAAA
36763401 ATATAAAAATAAATAAAA
1 A-ATAAAAATAAA-AAAA
*
36763419 AATAAAACTAAAAAGAA
1 AATAAAAATAAAAA-AA
*
36763436 AATAAGAAATAAAATAA
1 AATAA-AAATAAAAAAA
**
36763453 AA-AAAGCTAAAAATAA
1 AATAAAAATAAAAA-AA
36763469 AATAAA
1 AATAAA
36763475 GGAGATGGAC
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
15 6 0.10
16 8 0.13
17 25 0.41
18 22 0.36
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.15
Consensus pattern (16 bp):
AATAAAAATAAAAAAA
Found at i:36763414 original size:12 final size:11
Alignment explanation
Indices: 36763384--36763474 Score: 80
Period size: 12 Copynumber: 8.0 Consensus size: 11
36763374 AAAGAAGTTT
36763384 AATAACAATAAA
1 AATAA-AATAAA
36763396 CAA-AAATATAAA
1 -AATAAA-ATAAA
36763408 AAT-AAATAAAA
1 AATAAAAT-AAA
36763419 AATAAAACTAAA
1 AATAAAA-TAAA
*
36763431 AAGAAAATAAGA
1 AATAAAATAA-A
36763443 AATAAAATAAA
1 AATAAAATAAA
**
36763454 AA-AAGCTAAA
1 AATAAAATAAA
36763464 AATAAAATAAA
1 AATAAAATAAA
36763475 GGAGATGGAC
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
10 10 0.15
11 23 0.35
12 29 0.45
13 3 0.05
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.15
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:36764944 original size:13 final size:13
Alignment explanation
Indices: 36764922--36764959 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
36764912 AGTGTTCGGA
36764922 GGGAAAAAGAAAG
1 GGGAAAAAGAAAG
*
36764935 GGGAAGAAGAAAG
1 GGGAAAAAGAAAG
*
36764948 GGGAAAAGGAAA
1 GGGAAAAAGAAA
36764960 AGAAAGGGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (13 bp):
GGGAAAAAGAAAG
Found at i:36765669 original size:24 final size:24
Alignment explanation
Indices: 36765637--36765685 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
36765627 CAACTCTATG
36765637 TCAATTTCCTTTAAAAATAAAAAC
1 TCAATTTCCTTTAAAAATAAAAAC
36765661 TCAATTTCCTTTAAAAATAAAAAC
1 TCAATTTCCTTTAAAAATAAAAAC
36765685 T
1 T
36765686 AAGTCCAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (24 bp):
TCAATTTCCTTTAAAAATAAAAAC
Found at i:36772329 original size:64 final size:64
Alignment explanation
Indices: 36772248--36772431 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
36772238 AGACATTATG
* * *
36772248 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * *
36772312 ATGTAGCTAGGTCGCATGCATGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
36772377 AA
63 AA
* * *
36772379 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
36772432 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 24 0.25
66 20 0.21
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:36775142 original size:37 final size:37
Alignment explanation
Indices: 36775094--36775245 Score: 216
Period size: 37 Copynumber: 4.1 Consensus size: 37
36775084 ACCTTTAGCT
* ** *
36775094 CGGACGTAATCTCCACACGAAGTTGTCGGGTCTTACT
1 CGGACATAATCTCCACACGAAGTCATCGGGTCTTACC
*
36775131 CGGACAAAATCTCCACAC-ATAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGA-AGTCATCGGGTCTTACC
*
36775168 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGAAGTCATCGGGTCTTACC
* *
36775205 CGGACATAATCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACATAATCTCCACACGAAGTCATCGGGTCTTACC
36775242 CGGA
1 CGGA
36775246 ATATATTTCC
Statistics
Matches: 105, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
36 1 0.01
37 104 0.99
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CGGACATAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:36775558 original size:48 final size:48
Alignment explanation
Indices: 36775395--36775670 Score: 296
Period size: 48 Copynumber: 5.8 Consensus size: 48
36775385 CATCGCCTGC
* *
36775395 ATATTTCACACTAGCCATTCGGCTTTACCGCATATATGCAT-T-TC-CAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATA--CATATCTCACAT
** * * * *
36775442 AT-TCACCACATTGGCCATTCGGCCTTATCACATATATGCAT-GCTCACAT
1 ATAT-TTCACATTAGCCATTCGGCTTTACCACATATA--CATATCTCACAT
* * *
36775491 -T-TATCACATTGGCCATTCGGCTTTACCACATATACATATCACACAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACAT
* *
36775537 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACAT
* *
36775585 ATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACAT
*
36775633 ATATTTCACATTAGCCATTCGGCCTTATCACACATATA
1 ATATTTCACATTAGCCATTCGGCTTTA-C-CACATATA
36775671 TATACGGGTT
Statistics
Matches: 197, Mismatches: 24, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
45 3 0.02
46 7 0.04
47 62 0.31
48 113 0.57
49 4 0.02
50 8 0.04
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (48 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACAT
Found at i:36787935 original size:40 final size:40
Alignment explanation
Indices: 36787700--36787954 Score: 340
Period size: 40 Copynumber: 6.4 Consensus size: 40
36787690 GATGATAACG
* *
36787700 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
36787740 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
36787779 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * *
36787819 AGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACTAGATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
36787859 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
36787899 GGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
36787939 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
36787955 TACTTGGTTT
Statistics
Matches: 195, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 53 0.27
40 141 0.72
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:36793808 original size:47 final size:47
Alignment explanation
Indices: 36793739--36794244 Score: 297
Period size: 47 Copynumber: 10.7 Consensus size: 47
36793729 TTTGTGTGCA
*
36793739 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCCACATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCT
* * *
36793785 AGTGTAAGACCATGTCTGGGACATGGAATCGGCA-ATGA-GACAAGAACT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATG---AGAGCT
* * *
36793833 AGTATAAGA-CATGTCTAGGACAT-GCATCGTGCACATTATGAGAGCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCACATTATGAGAGCT
*
36793879 AGTGTAAGACCATGTCTGGGACATGGCATCGG--TATTGA-GACGAGAACT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT-ATGA-GAG--CT
* *
36793927 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGACTCGA-GATGTA-AGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-ATTATG-AGAGCT
* * ** * *
36793973 AGTGTAAGA-CATGTC-GGGACAT-GCGTCGGCTGCAAGATGTG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACATTATGAGAGCT
* * *
36794016 AGTGTAAGACCGTGTCTGGGACATGGCATCGGCAC-GTAT-AGAGGTGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGA-G-CT
* * ** * * * *
36794063 CAATGTAAGACCATGTTTGGGACATAACATTGGTATAAATATGTGAGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGG--CACAT-TATGAGAGCT
* * * * *
36794114 AGTGTAAGACCATGTCAGGGACATGGCGTCAGCCTCGATT-TCGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCAC-ATTAT-GAGAGCT
36794162 CAGTGTAAGACCATGTCTGGGACATGGCATC-G-AC-TTGATGGATGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT-AT-GA-GAGCT
* *
36794210 AGTGTAAAACCATGTCTAGGACATGGCATCGGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
36794245 TATACCCTAT
Statistics
Matches: 355, Mismatches: 59, Indels: 89
0.71 0.12 0.18
Matches are distributed among these distances:
43 10 0.03
44 12 0.03
45 32 0.09
46 68 0.19
47 89 0.25
48 71 0.20
49 37 0.10
50 28 0.08
51 2 0.01
52 3 0.01
53 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGAGCT
Found at i:36793976 original size:46 final size:46
Alignment explanation
Indices: 36793739--36794047 Score: 233
Period size: 46 Copynumber: 6.7 Consensus size: 46
36793729 TTTGTGTGCA
* * * *
36793739 AGTGTAAGACATGTCTGAGACATGCATCGGCCAC-ATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGACTCGA-GATGAGAGCT
* * ** *
36793785 AGTGTAAGACCATGTCTGGGACATGGAATCGGCAAT-GAGACAAGAACT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-ACTCGAGATGAGAGCT
* * * * *
36793833 AGTATAAGACATGTCTAGGACATGCATCGTG-CAC-ATTATGAGAGCG
1 AGTGTAAGACATGTCTGGGACATGCATCG-GACTCGA-GATGAGAGCT
* * *
36793879 AGTGTAAGACCATGTCTGGGACATGGCATCGGTA-TTGAGACGAGAACT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-ACTCGAGATGAGAGCT
36793927 AGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATGTA-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATG-AGAGCT
* * * *
36793973 AGTGTAAGACATGTC-GGGACATGCGTCGG-CTGCAAGATGTG-TC-
1 AGTGTAAGACATGTCTGGGACATGCATCGGACT-CGAGATGAGAGCT
*
36794016 AGTGTAAGACCGTGTCTGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
36794048 CACGTATAGA
Statistics
Matches: 208, Mismatches: 36, Indels: 38
0.74 0.13 0.13
Matches are distributed among these distances:
43 9 0.04
44 8 0.04
45 28 0.13
46 64 0.31
47 56 0.27
48 41 0.20
49 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATGAGAGCT
Found at i:36793977 original size:94 final size:93
Alignment explanation
Indices: 36793739--36793995 Score: 351
Period size: 94 Copynumber: 2.8 Consensus size: 93
36793729 TTTGTGTGCA
*
36793739 AGTGTAAGACATGTCTGAGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACATTATGAGAGCTAGTGTAAGACCATGTCTGG
36793804 GACATGGAATCGGCAATGAGACAAGAACT
65 GACATGGAATCGGCAATGAGACAAGAACT
* * *
36793833 AGTATAAGACATGTCTAGGACATGCATCGTGCACATTATGAGAGCGAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCG-GCACATTATGAGAGCTAGTGTAAGACCATGTCTGG
* * * *
36793898 GACATGGCATCGGTATTGAGACGAGAACT
65 GACATGGAATCGGCAATGAGACAAGAACT
* *
36793927 AGTGTAAGACATGTCTGGGACATGCATCGGACTCGA-GATGTA-AGCTAGTGTAAGA-CATGTC-
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CAC-ATTATG-AGAGCTAGTGTAAGACCATGTCT
36793988 GGGACATG
63 GGGACATG
36793996 CGTCGGCTGC
Statistics
Matches: 146, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
92 8 0.05
93 7 0.05
94 128 0.88
95 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACATTATGAGAGCTAGTGTAAGACCATGTCTGGG
ACATGGAATCGGCAATGAGACAAGAACT
Found at i:36801565 original size:47 final size:47
Alignment explanation
Indices: 36801497--36801862 Score: 242
Period size: 47 Copynumber: 7.7 Consensus size: 47
36801487 TTTGTCTACT
**
36801497 AGTGTAA-GACATACCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGGACATGTCTGGGACATGGCATCGG-CACATTATGAGAGCC
* * * *
36801543 AGTGTAAGGCCATGTCTGGGACATGGTATCGG--CATTGAGACGAGAGCT
1 AGTGTAAGGACATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCC
* * *
36801591 AGTAT-AGGACATGTCTGAGACAT-GCATCGGGCACATTATGAGAGCG
1 AGTGTAAGGACATGTCTGGGACATGGCATC-GGCACATTATGAGAGCC
* * *
36801637 AGTGTAA-GATCATGTCTAGGACATGGCATC-G-ACATTGAGACGAGAGCT
1 AGTGTAAGGA-CATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCC
* * *
36801685 AGTGTAA-GACATGTCTGGGACAT-GCATCAGCCTCGA-GATGTA-AGCC
1 AGTGTAAGGACATGTCTGGGACATGGCATC-GGCAC-ATTATG-AGAGCC
* * *
36801731 AGTGTAA-GACATGTCTGGGACATGGCATCGACACA-TATAGAGGTGTC
1 AGTGTAAGGACATGTCTGGGACATGGCATCGGCACATTAT-GA-GAGCC
* * * * * *
36801778 AGTGTAAGAAAATGTCTGGGACATGGCATCGGCATGAATATGTGAGATCT
1 AGTGTAAGGACATGTCTGGGACATGGCATCGGCA--CAT-TATGAGAGCC
36801828 AGTGTAA-GACCATGTCTGGGACATGGCATCGGCAC
1 AGTGTAAGGA-CATGTCTGGGACATGGCATCGGCAC
36801863 TATACCTTAT
Statistics
Matches: 251, Mismatches: 40, Indels: 56
0.72 0.12 0.16
Matches are distributed among these distances:
45 13 0.05
46 62 0.25
47 72 0.29
48 61 0.24
49 6 0.02
50 33 0.13
51 2 0.01
52 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.22
Consensus pattern (47 bp):
AGTGTAAGGACATGTCTGGGACATGGCATCGGCACATTATGAGAGCC
Found at i:36801659 original size:94 final size:94
Alignment explanation
Indices: 36801495--36801763 Score: 337
Period size: 94 Copynumber: 2.9 Consensus size: 94
36801485 TATTTGTCTA
* ** * *
36801495 CTAGTGTAAGACATACCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGGCCATGTCT
1 CTAGTATAAGACATGTCTGAGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
* * *
36801560 GGGACATGGTATCGGCATTGAGACGAGAG
66 AGGACATGGCATCGACATTGAGACGAGAG
* * * *
36801589 CTAGTATAGGACATGTCTGAGACATGCATCGGGCACATTATGAGAGCGAGTGTAAGATCATGTCT
1 CTAGTATAAGACATGTCTGAGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
36801654 AGGACATGGCATCGACATTGAGACGAGAG
66 AGGACATGGCATCGACATTGAGACGAGAG
* * * * *
36801683 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGTA-AGCCAGTGTAAGA-CATGT
1 CTAGTATAAGACATGTCTGAGACATGCATCGGCCAC-ATTATG-AGAGCCAGTGTAAGACCATGT
*
36801745 CTGGGACATGGCATCGACA
64 CTAGGACATGGCATCGACA
36801764 CATATAGAGG
Statistics
Matches: 152, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
93 23 0.15
94 127 0.84
95 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (94 bp):
CTAGTATAAGACATGTCTGAGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
AGGACATGGCATCGACATTGAGACGAGAG
Found at i:36801738 original size:46 final size:47
Alignment explanation
Indices: 36801497--36801860 Score: 251
Period size: 46 Copynumber: 7.7 Consensus size: 47
36801487 TTTGTCTACT
** * *
36801497 AGTGTAAGACATACCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGA-GATGAGAGCC
* * * * * *
36801543 AGTGTAAGGCCATGTCTGGGACATGGTATCGGCATTGAGACGAGAGCT
1 AGTGTAA-GACATGTCTGGGACATGGCATCGGCCTCGAGATGAGAGCC
* * * * * * *
36801591 AGTATAGGACATGTCTGAGACAT-GCATCGGGCAC-ATTATGAGAGCG
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGA-GATGAGAGCC
* * * * * *
36801637 AGTGTAAGATCATGTCTAGGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGATGAGAGCC
*
36801685 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATG-AGAGCC
* * * * *
36801731 AGTGTAAGACATGTCTGGGACATGGCATC-GACAC-ATATAGAGGTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGAT-GA-GAGCC
* * * * *
36801778 AGTGTAAGAAAATGTCTGGGACATGGCATCGGCAT-GAATATGTGAGATCT
1 AGTGTAAG-ACATGTCTGGGACATGGCATCGGCCTCG-AGA--TGAGAGCC
36801828 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC
36801861 ACTATACCTT
Statistics
Matches: 244, Mismatches: 55, Indels: 34
0.73 0.17 0.10
Matches are distributed among these distances:
45 5 0.02
46 69 0.28
47 68 0.28
48 61 0.25
49 4 0.02
50 34 0.14
51 2 0.01
52 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGAGAGCC
Found at i:36805502 original size:19 final size:19
Alignment explanation
Indices: 36805465--36805507 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
36805455 TGAAATTCGT
36805465 TTTTCTCTAAAAAGAAACGG
1 TTTTCTCTAAAAAGAAAC-G
36805485 TTTTC-CTAAAATAG-AACG
1 TTTTCTCTAAAA-AGAAACG
36805503 TTTTC
1 TTTTC
36805508 AAAAGCTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.27
19 9 0.41
20 7 0.32
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (19 bp):
TTTTCTCTAAAAAGAAACG
Found at i:36810751 original size:25 final size:26
Alignment explanation
Indices: 36810712--36810765 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
36810702 CCCATACGAG
* * *
36810712 CATGTAATTGGGAAGATCTTTTGAGC
1 CATGTAATTGAGAAGATCATGTGAGC
*
36810738 CATGTAA-TGAGAAGCTCATGTGAGC
1 CATGTAATTGAGAAGATCATGTGAGC
36810763 CAT
1 CAT
36810766 ATAACGGGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CATGTAATTGAGAAGATCATGTGAGC
Found at i:36810776 original size:25 final size:25
Alignment explanation
Indices: 36810734--36810935 Score: 89
Period size: 24 Copynumber: 8.2 Consensus size: 25
36810724 AAGATCTTTT
* * * *
36810734 GAGCCATGTAATGAGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGA
* *
36810759 GAGCCATATAACGGGAAGCTCTTGC
1 GAGCCATATAACGGGAAGCTCATGA
**
36810784 GAGCCAATTATTAA---GAAGCTCATCC
1 GAGCC-A-TA-TAACGGGAAGCTCATGA
* *
36810809 GAGCCATA-AATGGGAAGCTCAAGA
1 GAGCCATATAACGGGAAGCTCATGA
* * * *
36810833 GA-CCAAATATCAGGAAGCTCCA-AA
1 GAGCCATATAACGGGAAGCT-CATGA
* * *
36810857 GAGCCAT-TAATCTGAAAGCTCATAA
1 GAGCCATATAA-CGGGAAGCTCATGA
* * *
36810882 GAGCCGTA-ATCGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGA
* * *
36810906 GAGCCA-ATATCAGGAAGCTCGTGA
1 GAGCCATATAACGGGAAGCTCATGA
36810930 GAGCCA
1 GAGCCA
36810936 AGTAATGGGA
Statistics
Matches: 135, Mismatches: 29, Indels: 27
0.71 0.15 0.14
Matches are distributed among these distances:
21 2 0.01
23 7 0.05
24 60 0.44
25 60 0.44
26 1 0.01
27 2 0.01
28 3 0.02
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATGA
Found at i:36810899 original size:24 final size:25
Alignment explanation
Indices: 36810845--36810958 Score: 83
Period size: 24 Copynumber: 4.6 Consensus size: 25
36810835 CCAAATATCA
* *
36810845 GGAAGCTCCA-AAGAGCCATTAATCT
1 GGAAGCT-CATAAGAGCCAGTAATCG
*
36810870 GAAAGCTCATAAGAGCC-GTAATCG
1 GGAAGCTCATAAGAGCCAGTAATCG
** * *
36810894 GGAAGCTCATGTGAGCCAAT-ATCA
1 GGAAGCTCATAAGAGCCAGTAATCG
* *
36810918 GGAAGCTCGTGAGAGCCAAGTAAT-G
1 GGAAGCTCATAAGAGCC-AGTAATCG
* *
36810943 GGATGCTCAGAAGAGC
1 GGAAGCTCATAAGAGC
36810959 TAAATAACGA
Statistics
Matches: 69, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
24 39 0.57
25 28 0.41
26 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.28, T:0.18
Consensus pattern (25 bp):
GGAAGCTCATAAGAGCCAGTAATCG
Found at i:36810951 original size:73 final size:73
Alignment explanation
Indices: 36810734--36810958 Score: 186
Period size: 73 Copynumber: 3.1 Consensus size: 73
36810724 AAGATCTTTT
* * * * * * * *
36810734 GAGCCATGTAATGAGAAGCTCATGTGAGCCATATAACGGGAAGCTCTTGCGAGCCAATTATTAAG
1 GAGCCAT-AAATGGGAAGCTCATGTGAGCCA-ATATCAGGAAGCTCCTGAGAGCCAATTAATAGG
**
36810799 AAGCTCATCC
64 AAGCTCATAA
* * ** * *
36810809 GAGCCATAAATGGGAAGCTCAAGAGA-CCAAATATCAGGAAGCTCCAAAGAGCC-ATTAATCTGA
1 GAGCCATAAATGGGAAGCTCATGTGAGCC-AATATCAGGAAGCTCCTGAGAGCCAATTAAT-AGG
36810872 AAGCTCATAA
64 AAGCTCATAA
* * * *
36810882 GAGCCGT-AATCGGGAAGCTCATGTGAGCCAATATCAGGAAGCTCGTGAGAGCCAAGTAATGGGA
1 GAGCCATAAAT-GGGAAGCTCATGTGAGCCAATATCAGGAAGCTCCTGAGAGCCAATTAATAGGA
* *
36810946 TGCTCAGAA
65 AGCTCATAA
36810955 GAGC
1 GAGC
36810959 TAAATAACGA
Statistics
Matches: 118, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
72 8 0.07
73 80 0.68
74 23 0.19
75 7 0.06
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (73 bp):
GAGCCATAAATGGGAAGCTCATGTGAGCCAATATCAGGAAGCTCCTGAGAGCCAATTAATAGGAA
GCTCATAA
Found at i:36812461 original size:12 final size:12
Alignment explanation
Indices: 36812442--36812473 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
36812432 ATGCCACACA
36812442 GCCGTGTGGTAG
1 GCCGTGTGGTAG
*
36812454 GTCGTGTGGTAG
1 GCCGTGTGGTAG
36812466 GCCGTGTG
1 GCCGTGTG
36812474 CCATAACACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.50, T:0.28
Consensus pattern (12 bp):
GCCGTGTGGTAG
Found at i:36813975 original size:21 final size:20
Alignment explanation
Indices: 36813946--36813989 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
36813936 ATACTAGAAC
*
36813946 CTGAAACTACTATAGGTAGTA
1 CTGAAACTACTATAGATAG-A
*
36813967 CTGAGACTACTATAGATAGA
1 CTGAAACTACTATAGATAGA
36813987 CTG
1 CTG
36813990 TACTGAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (20 bp):
CTGAAACTACTATAGATAGA
Found at i:36817040 original size:28 final size:28
Alignment explanation
Indices: 36816991--36817045 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
36816981 CAGTACAGTC
* * *
36816991 TGGGCCTTAGCCCTATATAGTAATAGTG
1 TGGGCCTAAGCCCAATACAGTAATAGTG
* *
36817019 TGGGCCTAAGCCCAATGCAGTATTAGT
1 TGGGCCTAAGCCCAATACAGTAATAGT
36817046 ACACTGTAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (28 bp):
TGGGCCTAAGCCCAATACAGTAATAGTG
Found at i:36817259 original size:27 final size:26
Alignment explanation
Indices: 36817206--36817286 Score: 83
Period size: 27 Copynumber: 3.1 Consensus size: 26
36817196 CAAAAATAGT
* * *
36817206 TAATGTGGCAAAGCCACCAGCATCAG
1 TAATGTGGCATAGCCACCAGTAACAG
36817232 TAATTGTGGCATAGCCACCAGTAACAG
1 TAA-TGTGGCATAGCCACCAGTAACAG
** *
36817259 TGAATGTGATATAGTCACCAGT-ACAG
1 T-AATGTGGCATAGCCACCAGTAACAG
36817285 TA
1 TA
36817287 CTTCCTCCAT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
25 1 0.02
26 8 0.17
27 36 0.77
28 2 0.04
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (26 bp):
TAATGTGGCATAGCCACCAGTAACAG
Found at i:36817544 original size:53 final size:54
Alignment explanation
Indices: 36817423--36817625 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 54
36817413 AGGGCTACTC
* * * *
36817423 GTCATTTT-GCCATACAGGGGTATCACGGTCATTTTACCCTACAAGGGTATTACA
1 GTCATTTTAGCC-TACAGGGGTATTACAGTTATTTTACCCTACAACGGTATTACA
* * * *
36817477 GTCATTTAACCCTACAGGGGCATTACAGTTATTTTACCTTAC-ACGGTATTACA
1 GTCATTTTAGCCTACAGGGGTATTACAGTTATTTTACCCTACAACGGTATTACA
* * * * *
36817530 GTTATTTTAGCCTACAGGGGTATTACAGTTATTTTACCCCATAAGGGTATT-CG
1 GTCATTTTAGCCTACAGGGGTATTACAGTTATTTTACCCTACAACGGTATTACA
* * * * *
36817583 GTCATTTTACCCTTCAAGGGCATTAC-GATCATTTTACCCTACA
1 GTCATTTTAGCCTACAGGGGTATTACAG-TTATTTTACCCTACA
36817626 GGGATATTAC
Statistics
Matches: 121, Mismatches: 25, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
52 1 0.01
53 79 0.65
54 39 0.32
55 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (54 bp):
GTCATTTTAGCCTACAGGGGTATTACAGTTATTTTACCCTACAACGGTATTACA
Found at i:36817608 original size:80 final size:80
Alignment explanation
Indices: 36817451--36817635 Score: 196
Period size: 80 Copynumber: 2.3 Consensus size: 80
36817441 GGTATCACGG
* * * *
36817451 TCATTTTACCCTACAAGGGTATTACAGTCATTTAACCCTACAGGGGCATTACAGTTATTTTACCT
1 TCATTTTACCCTACAGGGGTATTACAGTCATTTAACCCCACAAGGGCATTACAGTCATTTTACCT
*
36817516 TACACGGTATTAC-A
66 TACACGGCATTACGA
* * * * * * *
36817530 GTTATTTTAGCCTACAGGGGTATTACAGTTATTTTACCCCATAAGGGTATT-CGGTCATTTTACC
1 -TCATTTTACCCTACAGGGGTATTACAGTCATTTAACCCCACAAGGGCATTACAGTCATTTTA-C
*
36817594 CTT-CAAGGGCATTACGA
64 CTTAC-ACGGCATTACGA
*
36817611 TCATTTTACCCTACAGGGATATTAC
1 TCATTTTACCCTACAGGGGTATTAC
36817636 GATCAAATAA
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
79 10 0.12
80 75 0.87
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (80 bp):
TCATTTTACCCTACAGGGGTATTACAGTCATTTAACCCCACAAGGGCATTACAGTCATTTTACCT
TACACGGCATTACGA
Found at i:36817640 original size:27 final size:26
Alignment explanation
Indices: 36817423--36817635 Score: 189
Period size: 27 Copynumber: 8.0 Consensus size: 26
36817413 AGGGCTACTC
* * * *
36817423 GTCATTTTGCCATACAGGGGTATCACG
1 GTCATTTTACCCTACA-GGGTATTACA
36817450 GTCATTTTACCCTACAAGGGTATTACA
1 GTCATTTTACCCTAC-AGGGTATTACA
* *
36817477 GTCATTTAACCCTACAGGGGCATTACA
1 GTCATTTTACCCTACA-GGGTATTACA
* * *
36817504 GTTATTTTACCTTACACGGTATTACA
1 GTCATTTTACCCTACAGGGTATTACA
* *
36817530 GTTATTTTAGCCTACAGGGGTATTACA
1 GTCATTTTACCCTACA-GGGTATTACA
* *
36817557 GTTATTTTACCCCATA-AGGGTATT-CG
1 GTCATTTTA-CCC-TACAGGGTATTACA
* *
36817583 GTCATTTTACCCTTCAAGGGCATTAC-
1 GTCATTTTACCCTAC-AGGGTATTACA
36817609 GATCATTTTACCCTACAGGGATATTAC
1 G-TCATTTTACCCTACAGGG-TATTAC
36817636 GATCAAATAA
Statistics
Matches: 155, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
24 1 0.01
25 3 0.02
26 44 0.28
27 101 0.65
28 4 0.03
29 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (26 bp):
GTCATTTTACCCTACAGGGTATTACA
Found at i:36820539 original size:11 final size:11
Alignment explanation
Indices: 36820523--36820547 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36820513 AAAATCTTAT
36820523 TTTATTATTTA
1 TTTATTATTTA
36820534 TTTATTATTTA
1 TTTATTATTTA
36820545 TTT
1 TTT
36820548 TGATTTTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:36821390 original size:12 final size:12
Alignment explanation
Indices: 36821373--36821402 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
36821363 ACAAAATCCG
36821373 AATTTAATTTCC
1 AATTTAATTTCC
*
36821385 AATTTAATTTCT
1 AATTTAATTTCC
36821397 AATTTA
1 AATTTA
36821403 TTTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTAATTTCC
Found at i:36822663 original size:23 final size:23
Alignment explanation
Indices: 36822633--36822690 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
36822623 CATGACTTAT
36822633 AATGGTTTAAAATTTTTAGTTAA
1 AATGGTTTAAAATTTTTAGTTAA
*
36822656 AATGGTTTAAAAATTTTAGTTAA
1 AATGGTTTAAAATTTTTAGTTAA
36822679 AA-GG-TTAAAATT
1 AATGGTTTAAAATT
36822691 GTAAAATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 7 0.21
22 2 0.06
23 24 0.73
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (23 bp):
AATGGTTTAAAATTTTTAGTTAA
Found at i:36823723 original size:56 final size:56
Alignment explanation
Indices: 36823637--36823827 Score: 303
Period size: 56 Copynumber: 3.4 Consensus size: 56
36823627 CCATGGCATC
** *
36823637 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTAATATGTGATTTT
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
* *
36823693 GATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGGATCGATATGTGATTCT
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
* *
36823749 GATATATGTGT-CTGAGTAAGATCACGTTTAATACGTCGGCATCGATATGTGATTCT
1 GATATATGTGTGC-GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
36823805 GATATATGTGTGCGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
36823828 CTATCTGGGA
Statistics
Matches: 123, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
55 1 0.01
56 121 0.98
57 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.35
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
Found at i:36823846 original size:56 final size:52
Alignment explanation
Indices: 36823637--36823858 Score: 194
Period size: 56 Copynumber: 4.0 Consensus size: 52
36823627 CCATGGCATC
* ** *
36823637 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTAATATGTGATTTT
1 GATATATGTGTGCGAGTAAGACC-C-TTTAACAC--TGGCATCGATATGTGATTCT
* *
36823693 GATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGGATCGATATGTGATTCT
1 GATATATGTGTGCGAGTAAGACC-C-TTT-A-ACACTGGCATCGATATGTGATTCT
* *
36823749 GATATATGTGT-CTGAGTAAGATCACGTTTAATACGTCGGCATCGATATGTGATTCT
1 GATATATGTGTGC-GAGTAAGA-C-CCTTTAACAC-T-GGCATCGATATGTGATTCT
* *
36823805 GATATATGTGTGCGAGTAAGACCCTATCTGGGACACTGGCATTGATATGTGATT
1 GATATATGTGTGCGAGTAAGACCCT-T-T--AACACTGGCATCGATATGTGATT
36823859 ACATGTAAGA
Statistics
Matches: 140, Mismatches: 14, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
54 4 0.03
55 5 0.04
56 121 0.86
57 4 0.03
58 6 0.04
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (52 bp):
GATATATGTGTGCGAGTAAGACCCTTTAACACTGGCATCGATATGTGATTCT
Found at i:36823852 original size:112 final size:112
Alignment explanation
Indices: 36823637--36823858 Score: 297
Period size: 112 Copynumber: 2.0 Consensus size: 112
36823627 CCATGGCATC
* * *
36823637 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTAATATGTGATTTTGATATATGT
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTCGGCATCAATATGTGATTCTGATATATGT
* * *
36823702 GTGCGAGTAAGACCACGTTTAATACATTGGGATCGATATGTGATTCT
66 GTGCGAGTAAGACCACGTTTAAGACACTGGCATCGATATGTGATTCT
* *
36823749 GATATATGTGT-CTGAGTAAGATCACGTTTAATACGTCGGCATCGATATGTGATTCTGATATATG
1 GATATATGTGTGC-GAGTAAGACCACGTTTAATACGTCGGCATCAATATGTGATTCTGATATATG
** *
36823813 TGTGCGAGTAAGACC-C-TATCTGGGACACTGGCATTGATATGTGATT
65 TGTGCGAGTAAGACCACGT-T-TAAGACACTGGCATCGATATGTGATT
36823859 ACATGTAAGA
Statistics
Matches: 96, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
110 1 0.01
111 3 0.03
112 92 0.96
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (112 bp):
GATATATGTGTGCGAGTAAGACCACGTTTAATACGTCGGCATCAATATGTGATTCTGATATATGT
GTGCGAGTAAGACCACGTTTAAGACACTGGCATCGATATGTGATTCT
Found at i:36830645 original size:56 final size:56
Alignment explanation
Indices: 36830583--36830705 Score: 210
Period size: 56 Copynumber: 2.2 Consensus size: 56
36830573 TATTTTTGTG
*
36830583 CGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTTGATATATGTGTA
1 CGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTA
* *
36830639 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
1 CGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTA
*
36830695 CAAGTAAGACC
1 CGAGTAAGACC
36830706 CTGTCTGGGA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (56 bp):
CGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTA
Found at i:36838877 original size:31 final size:31
Alignment explanation
Indices: 36838839--36838917 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 31
36838829 TTTAACGATT
36838839 ACTGGGCCGAAGCCTTTTCATAAATCATAT-C
1 ACTGGGCCGAAGCCTTTTCATAAATCAT-TGC
*
36838870 ACTGGGCCAAAGCCTTTTCATAAATCATTGC
1 ACTGGGCCGAAGCCTTTTCATAAATCATTGC
*
36838901 ACTGGGCTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
36838918 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
30 1 0.02
31 43 0.98
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATTGC
Found at i:36838988 original size:42 final size:42
Alignment explanation
Indices: 36838941--36839032 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
36838931 TGGCCCATAG
* ** *
36838941 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
36838983 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
36839025 GCCCATTT
1 GCCCATTT
36839033 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:36839207 original size:26 final size:26
Alignment explanation
Indices: 36839164--36839287 Score: 214
Period size: 26 Copynumber: 4.8 Consensus size: 26
36839154 CCTCTTTAAT
36839164 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
36839189 ACCTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
36839215 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
36839241 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
36839267 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
36839288 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 9 0.10
26 83 0.90
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:36840152 original size:27 final size:27
Alignment explanation
Indices: 36840090--36840167 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
36840080 GGGCATATTC
36840090 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
36840117 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
36840144 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
36840168 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:36840238 original size:27 final size:27
Alignment explanation
Indices: 36840185--36840423 Score: 190
Period size: 27 Copynumber: 8.8 Consensus size: 27
36840175 TTTCATCCTA
* * * *
36840185 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
36840212 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
36840239 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
* * ** *
36840268 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
36840295 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
36840322 TAAGGCTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* *
36840349 CAAGGGCATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
36840376 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
**
36840403 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTCGGTAATTTT
36840424 GTAAATCGAG
Statistics
Matches: 169, Mismatches: 41, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
27 141 0.83
28 13 0.08
29 15 0.09
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:36840435 original size:27 final size:27
Alignment explanation
Indices: 36840185--36840464 Score: 179
Period size: 27 Copynumber: 10.3 Consensus size: 27
36840175 TTTCATCCTA
* * * * *
36840185 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * *
36840212 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
36840239 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-T
* *
36840268 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
* *
36840295 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * * * *
36840322 TAAGGCTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
36840349 CAAGGGCATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
36840375 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* *
36840403 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** * *
36840430 CGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
36840457 CAAGGGTA
1 CAAGGGTA
36840465 AAACGGTAAT
Statistics
Matches: 200, Mismatches: 47, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
26 2 0.01
27 169 0.85
28 14 0.07
29 15 0.08
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:36840437 original size:54 final size:54
Alignment explanation
Indices: 36840185--36840437 Score: 213
Period size: 54 Copynumber: 4.6 Consensus size: 54
36840175 TTTCATCCTA
* * * * * * **
36840185 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAAC
* * * * ** *
36840239 CAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-TCAAGGGTATTTCGGTAATTTTACAAAC
* * * * *
36840295 CAGGGGTATTTTGGTAATTTTACAAATTAAGGCTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAAC
* * * *
36840349 CAAGGGCATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTTACAAAC
** *
36840403 CAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTA
36840438 AAATGGTAAT
Statistics
Matches: 158, Mismatches: 35, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
54 105 0.66
55 17 0.11
56 36 0.23
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAAC
Found at i:36840445 original size:54 final size:54
Alignment explanation
Indices: 36840334--36840502 Score: 142
Period size: 54 Copynumber: 3.1 Consensus size: 54
36840324 AGGCTATTTC
* * ** * ***
36840334 GGTAATTTCACAAACCAAGGGCATTTTGGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCGA-GGGTAAAAT
*
36840388 GGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAT
* ** * **** * *
36840442 GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAT
1 GGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAT
*
36840496 GATAATT
1 GGTAATT
36840503 ATGTAAATTG
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
54 91 0.98
55 2 0.02
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (54 bp):
GGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAT
Found at i:36840465 original size:27 final size:27
Alignment explanation
Indices: 36840416--36840572 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
36840406 GGGTATTTTA
* *
36840416 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
36840443 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
36840470 GTAATTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
36840497 ATAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
36840524 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
36840551 GTGATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
36840573 CTTTGGTAAT
Statistics
Matches: 114, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:36840490 original size:81 final size:80
Alignment explanation
Indices: 36840405--36840585 Score: 209
Period size: 81 Copynumber: 2.2 Consensus size: 80
36840395 TTACAAACCA
* * *
36840405 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACG
1 AGGGTAATTT-GTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACG
*
36840470 GTAATTCTGTAAGTCG
65 GTAATTCTGTAAATCG
** * * * **
36840486 AGGGTAAAATGATAATTATGTAAATTGGGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAACG
1 AGGGTAATTTG-TAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACG
*
36840551 GTGATTCTGTAAATCG
65 GTAATTCTGTAAATCG
* *
36840567 GGGGTACTTTGGTAATTTT
1 AGGGTAATTT-GTAATTTT
36840586 ACACGTCGAA
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
80 1 0.01
81 79 0.98
82 1 0.01
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.33
Consensus pattern (80 bp):
AGGGTAATTTGTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACGG
TAATTCTGTAAATCG
Found at i:36840608 original size:27 final size:27
Alignment explanation
Indices: 36840578--36840667 Score: 103
Period size: 27 Copynumber: 3.3 Consensus size: 27
36840568 GGGTACTTTG
**
36840578 GTAATTTTACACGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
36840605 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
36840632 GTATTTTTACAAA-CTAAGGGTATTTC-
1 GTAATTTTACAAATCGAA-GGTATTTCA
36840658 GATAATTTTA
1 G-TAATTTTA
36840668 GTAAACAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.06
27 51 0.94
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:36852704 original size:42 final size:42
Alignment explanation
Indices: 36852644--36852797 Score: 200
Period size: 42 Copynumber: 3.6 Consensus size: 42
36852634 TAAGTCTATG
* *
36852644 TGTAAGACCATATCTGGGATATTGCATCAATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* **
36852686 CGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * *
36852728 TGTAAGACTATAGCTGGGCTATTGGCATCGATATGAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
* *
36852771 TGTAAGACTATTTCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
36852798 TGGTATGGTA
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 60 0.62
43 36 0.38
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:36852787 original size:85 final size:84
Alignment explanation
Indices: 36852642--36852797 Score: 231
Period size: 85 Copynumber: 1.8 Consensus size: 84
36852632 ACTAAGTCTA
* *
36852642 TGTGTAAGACCATATCTGGGATATTGCATCAATATGAGATTTCACGTAAGACCATATCTGGGATA
1 TGTGTAAGACCATAGCTGGGATATTGCATCAATATGAGATTACACGTAAGACCATATCTGGGATA
36852707 TGGCATCGATATGAGATTT
66 TGGCATCGATATGAGATTT
* * * * * *
36852726 TGTGTAAGACTATAGCTGGGCTATTGGCATCGATATGAGATTACATGTAAGACTATTTCTGGGAT
1 TGTGTAAGACCATAGCTGGGATATT-GCATCAATATGAGATTACACGTAAGACCATATCTGGGAT
36852791 ATGGCAT
65 ATGGCAT
36852798 TGGTATGGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
84 22 0.35
85 41 0.65
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.33
Consensus pattern (84 bp):
TGTGTAAGACCATAGCTGGGATATTGCATCAATATGAGATTACACGTAAGACCATATCTGGGATA
TGGCATCGATATGAGATTT
Found at i:36854960 original size:50 final size:50
Alignment explanation
Indices: 36854879--36855323 Score: 408
Period size: 50 Copynumber: 8.9 Consensus size: 50
36854869 TCCGTTGTGA
* *
36854879 GTCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * * *
36854929 GTCGCATGTGTAGTACTAAGTGCAGGATACTATGCGTACC-TATTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * *
36854980 ATCACATGTGTAGTACTAAGTGAAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * *
36855030 GTCACGTGCGTAGTACTAAATGCAGGCTACTACGTGTACCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *
36855080 GTCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * ** * * *
36855130 GTGACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* ** * ** * * *
36855181 ATCATGTGTGTAGTACTAAGTGCAGGCTACAACGTGTGTCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * *
36855231 GTCACGTATGTAGTAGTAAGTACAGGCTACTACGTGTACCAGATTAATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *
36855281 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
36855324 GAGCTTCGGT
Statistics
Matches: 309, Mismatches: 80, Indels: 12
0.77 0.20 0.03
Matches are distributed among these distances:
49 7 0.02
50 231 0.75
51 68 0.22
52 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:36855225 original size:201 final size:201
Alignment explanation
Indices: 36854878--36855312 Score: 647
Period size: 201 Copynumber: 2.2 Consensus size: 201
36854868 ATCCGTTGTG
* *
36854878 AGTCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGT
* *
36854943 ACTAAGTGCAGGATACTATGCGTACCTATTAACTTCGATCACATGTGTAGTACTAAGTGAAGGCT
66 ACTAAGTGCAGGATACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGAAGGCT
* * *
36855008 ACTACGTGTATCAGATGGTTAAGTCACGTGCGTAGTACTAAATGCAGGCTACTACGTGTACCAGA
131 ACAACGTGTATCAGATGGTTAAGTCACGTACGTAGTACTAAATACAGGCTACTACGTGTACCAGA
**
36855073 TGGTTA
196 TGAATA
*
36855079 AGTCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATTGATAGGT-GACATGTGTAG
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCG-CATGTGTAG
* * ** *
36855143 TACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGCAGGC
65 TACTAAGTGCAGGATACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGAAGGC
* * * *
36855208 TACAACGTGTGTCAGATGGTTAAGTCACGTATGTAGTAGTAAGTACAGGCTACTACGTGTACCAG
130 TACAACGTGTATCAGATGGTTAAGTCACGTACGTAGTACTAAATACAGGCTACTACGTGTACCAG
*
36855273 ATTAATA
195 ATGAATA
* * *
36855280 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
36855313 TGCGTACCAG
Statistics
Matches: 209, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
200 1 0.00
201 208 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (201 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGATACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGAAGGCT
ACAACGTGTATCAGATGGTTAAGTCACGTACGTAGTACTAAATACAGGCTACTACGTGTACCAGA
TGAATA
Found at i:36855331 original size:151 final size:152
Alignment explanation
Indices: 36854877--36855331 Score: 517
Period size: 151 Copynumber: 3.0 Consensus size: 152
36854867 GATCCGTTGT
* * * * * *
36854877 GAGTCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAG
1 GAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAGTCACGTGTGTAG
* * * * * * * *
36854942 TACTAAGTGCAGGATACTATGCGTACC-TATTAACTTCGATCACATGTGTAGTACTAAGTGAAGG
66 TACTAAGTGCAGGCTACTACGTGTACCAGATTAA--TAGGTCGCATGTGTAGTACTAAGTGCAGG
* * *
36855006 CTACTACGTGTATCAGATG-G-TT-
129 CTACTATGCGTACCAGA-GAGCTTC
* * *
36855028 AAGTCACGTGCGTAGTACTAAATGCAGGCTACTACGTGTACCAGATGGTTAAGTCACGTGTGTAG
1 GAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAGTCACGTGTGTAG
* * *
36855093 TACTAAGTGCAGACTACTACATGTACCAGATTGATAGGT-GACATGTGTAGTACTAAGTGCAGGC
66 TACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCG-CATGTGTAGTACTAAGTGCAGGC
* * ** *
36855157 TACTATGCATACCCGTTAACTTC
130 TACTATGCGTACCAGAGAGCTTC
* * ** *
36855180 GA-TCATGTGTGTAGTACTAAGTGCAGGCTACAACGTGTGTCAGATGGTTAAGTCACGTATGTAG
1 GAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAGTCACGTGTGTAG
* *
36855244 TAGTAAGTACAGGCTACTACGTGTACCAGATTAATAGGTCGCATGTGTAGTACTAAGTGCAGGCT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCGCATGTGTAGTACTAAGTGCAGGCT
36855309 ACTATGCGTACCAGAGAGCTTC
131 ACTATGCGTACCAGAGAGCTTC
36855331 G
1 G
36855332 GTTACAAGGG
Statistics
Matches: 252, Mismatches: 46, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
150 35 0.14
151 211 0.84
152 6 0.02
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (152 bp):
GAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAGTCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCGCATGTGTAGTACTAAGTGCAGGCT
ACTATGCGTACCAGAGAGCTTC
Found at i:36856097 original size:16 final size:19
Alignment explanation
Indices: 36856061--36856098 Score: 55
Period size: 16 Copynumber: 2.2 Consensus size: 19
36856051 TAAATAAATT
36856061 AATAACAATGACTCGAGAA
1 AATAACAATGACTCGAGAA
36856080 AATAAC-ATGAC-C-AGAA
1 AATAACAATGACTCGAGAA
36856096 AAT
1 AAT
36856099 CAGCAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 5 0.26
19 6 0.32
ACGTcount: A:0.55, C:0.16, G:0.13, T:0.16
Consensus pattern (19 bp):
AATAACAATGACTCGAGAA
Found at i:36859285 original size:48 final size:48
Alignment explanation
Indices: 36859224--36859439 Score: 222
Period size: 48 Copynumber: 4.5 Consensus size: 48
36859214 TGTGTAAGCC
* *
36859224 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGTT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCT
* * * * *** * *
36859272 AGTGCAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCT
* *
36859320 AGTGTAAGACCATATTTGGAACATGGCATCGGTATTGTTATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCT
* *** *
36859368 AGTGTAAGACCATGTCTAGG-ACATGGCATCGGTC-TCAATATGTGAGGCT
1 AGTGTAAGACCATGT-TTGGAACATGGCATCGG-CATTGTTATGAGA-GCT
36859417 -GTGTAAGACCATGTTTGGAACAT
1 AGTGTAAGACCATGTTTGGAACAT
36859440 AAGACCATTT
Statistics
Matches: 134, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
47 3 0.02
48 125 0.93
49 6 0.04
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCT
Found at i:36859384 original size:96 final size:96
Alignment explanation
Indices: 36859220--36859439 Score: 359
Period size: 96 Copynumber: 2.3 Consensus size: 96
36859210 AGATTGTGTA
*
36859220 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGTTAGTGCAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGCAAGACCAT
*
36859285 GTCTGGGACATGGCATCGGCCTCAATATGTG
66 GTCTAGGACATGGCATCGGCCTCAATATGTG
* ** *
36859316 AGCCAGTGTAAGACCATATTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGCAAGACCAT
*
36859381 GTCTAGGACATGGCATCGGTCTCAATATGTG
66 GTCTAGGACATGGCATCGGCCTCAATATGTG
* *
36859412 AGGCTGTGTAAGACCATGTTTGGAACAT
1 AGCCAGTGTAAGACCATGTTTGGAACAT
36859440 AAGACCATTT
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 114 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (96 bp):
AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGCAAGACCAT
GTCTAGGACATGGCATCGGCCTCAATATGTG
Found at i:36867008 original size:48 final size:48
Alignment explanation
Indices: 36866955--36867415 Score: 391
Period size: 48 Copynumber: 9.6 Consensus size: 48
36866945 TGATACTAGG
* * *
36866955 GTTATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * *
36867003 GTTATGAGAGCTAGTGTAAGATCATGTTTGGGACATGGCATAGGCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * *
36867051 AATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCGGCATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * * * * * * *
36867099 GTCACGAGAGCTAGTGTAAGATCACGTTTGGGATATGGTATCGCCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * ** * *
36867147 AATATGTGAGCCAACGTAAGACCATGTTTGGAGCATGGCATCGACATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * *
36867195 GTTATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCACCGGCCTT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * *
36867243 AATATGTGAGGTAGTGTAAGACCATGTTTGGAACATGGCATCGGTATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * * *
36867291 GTTATGAGAGCTAGTGTAAGACCAAGTCTGGGACACGGCATCGGCGTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * * * * * **
36867339 AATATGTGATCCAGTGTAAGACCCTATTTGGAACATGGCATCGGTACC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
36867387 GATATATGAGAGCTAGTGTAAGACCATGT
1 G-T-TATGAGAGCTAGTGTAAGACCATGT
36867416 CGAGGACATG
Statistics
Matches: 306, Mismatches: 105, Indels: 2
0.74 0.25 0.00
Matches are distributed among these distances:
48 286 0.93
50 20 0.07
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
Found at i:36867121 original size:96 final size:96
Alignment explanation
Indices: 36866957--36867431 Score: 628
Period size: 96 Copynumber: 4.9 Consensus size: 96
36866947 ATACTAGGGT
*
36866957 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* * *
36867022 GATCATGTTTGGGACATGGCATAGGCCTCAA
66 GACCATGTCTGGGACATGGCATCGGCCTCAA
* * *
36867053 TATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCGGCATTGTCACGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* * * * * *
36867118 GATCACGTTTGGGATATGGTATCGCCCTCAA
66 GACCATGTCTGGGACATGGCATCGGCCTCAA
** * * *
36867149 TATGTGAGCCAACGTAAGACCATGTTTGGAGCATGGCATCGACATTGTTATGAAAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* *
36867214 GACCATGTCTGGGACATGGCACCGGCCTTAA
66 GACCATGTCTGGGACATGGCATCGGCCTCAA
** *
36867245 TATGTGAGGTAGTGTAAGACCATGTTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* * *
36867310 GACCAAGTCTGGGACACGGCATCGGCGTCAA
66 GACCATGTCTGGGACATGGCATCGGCCTCAA
* * * * **
36867341 TATGTGATCCAGTGTAAGACCCTATTTGGAACATGGCATCGGTACCGATATATGAGAGCTAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG-T-TATGAGAGCTAGTGT
36867406 AAGACCATGTC-GAGGACATGGCATCG
64 AAGACCATGTCTG-GGACATGGCATCG
36867432 ACATCTTACC
Statistics
Matches: 331, Mismatches: 45, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
96 292 0.88
97 2 0.01
98 37 0.11
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCAA
Found at i:36873352 original size:30 final size:30
Alignment explanation
Indices: 36873317--36873376 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
36873307 CAAGAAAACT
*
36873317 GAATAAAGAAATCCA-AGATAGAGAAACCCA
1 GAATAAAGAAATCCAGA-ATAAAGAAACCCA
36873347 GAATAAAGAAATCCAGAATAAAGAAACCCA
1 GAATAAAGAAATCCAGAATAAAGAAACCCA
36873377 AGATACGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.10
Consensus pattern (30 bp):
GAATAAAGAAATCCAGAATAAAGAAACCCA
Found at i:36873356 original size:15 final size:15
Alignment explanation
Indices: 36873317--36873376 Score: 77
Period size: 15 Copynumber: 4.0 Consensus size: 15
36873307 CAAGAAAACT
*
36873317 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
*
36873332 -AGATAGAGAAACCCA
1 GA-ATAAAGAAACCCA
*
36873347 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
36873362 GAATAAAGAAACCCA
1 GAATAAAGAAACCCA
36873377 AGATACGATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 1 0.03
15 36 0.95
16 1 0.03
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.10
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:36893489 original size:40 final size:40
Alignment explanation
Indices: 36893434--36893655 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
36893424 TATTCGAATG
* *
36893434 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
36893474 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
36893514 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
36893554 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
36893594 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
36893634 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
36893656 TACTTGGGTT
Statistics
Matches: 164, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.09
40 148 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:36899581 original size:16 final size:16
Alignment explanation
Indices: 36899560--36899591 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36899550 CTTGTAACTC
*
36899560 CTCAAAAATCCTGAAA
1 CTCAAAAATCCCGAAA
36899576 CTCAAAAATCCCGAAA
1 CTCAAAAATCCCGAAA
36899592 TCCTAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16
Consensus pattern (16 bp):
CTCAAAAATCCCGAAA
Found at i:36901118 original size:28 final size:29
Alignment explanation
Indices: 36901087--36901147 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
36901077 GTGAGCATGA
36901087 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
* * *
36901115 ATATAAAGGTGATTTGGGTCTGATGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
36901144 ATAT
1 ATAT
36901148 GAATGAGATG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAACGGGCC
Found at i:36902854 original size:14 final size:14
Alignment explanation
Indices: 36902832--36902863 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
36902822 ATGCATGCAA
*
36902832 AATATAAAAGACAT
1 AATACAAAAGACAT
36902846 AATACAAAAGACAT
1 AATACAAAAGACAT
36902860 AATA
1 AATA
36902864 GTGAAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.09, G:0.06, T:0.19
Consensus pattern (14 bp):
AATACAAAAGACAT
Found at i:36904001 original size:54 final size:54
Alignment explanation
Indices: 36903919--36904026 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
36903909 ATATCTAGAC
36903919 ATGCGTAAAGCATCACATACATAAGGCTTCCAACTGTAGAAGCATATGGAACCT
1 ATGCGTAAAGCATCACATACATAAGGCTTCCAACTGTAGAAGCATATGGAACCT
*
36903973 ATGCGTAAAGCATCGCATACATAAGGCTTCCAACTGTAGAAGCATATGGAACCT
1 ATGCGTAAAGCATCACATACATAAGGCTTCCAACTGTAGAAGCATATGGAACCT
36904027 TACTCATATG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (54 bp):
ATGCGTAAAGCATCACATACATAAGGCTTCCAACTGTAGAAGCATATGGAACCT
Found at i:36911979 original size:42 final size:41
Alignment explanation
Indices: 36911887--36912036 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 41
36911877 CAATGCCAAC
* * * *
36911887 ATCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCATT
1 ATCCCAGACATGGTCTTACACGAAATCAAATA-CGATGCCA-T
36911930 ATCCCAGACA-GGATCTTACACGAAATCAAATACGATGCCGAT
1 ATCCCAGACATGG-TCTTACACGAAATCAAATACGATGCC-AT
* * *
36911972 GTCCCAGACATGGTTTTACACGTAAATCATAAGT-CGATGCCAAC
1 ATCCCAGACATGGTCTTACACG-AAATCA-AA-TACGATGCC-AT
36912016 ATCCCAGACATGGTCTTACAC
1 ATCCCAGACATGGTCTTACAC
36912037 AATAACATAT
Statistics
Matches: 91, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
42 27 0.30
43 34 0.37
44 29 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (41 bp):
ATCCCAGACATGGTCTTACACGAAATCAAATACGATGCCAT
Found at i:36913215 original size:24 final size:24
Alignment explanation
Indices: 36913186--36913232 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
36913176 AACATAGAAT
36913186 ATAATATTAAAATATTTTTCTAAA
1 ATAATATTAAAATATTTTTCTAAA
36913210 ATAATATTAAAATATTTTTCTAA
1 ATAATATTAAAATATTTTTCTAA
36913233 CTCAGATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
ATAATATTAAAATATTTTTCTAAA
Found at i:36917112 original size:93 final size:93
Alignment explanation
Indices: 36916999--36917169 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
36916989 CCCATAAGCG
* * * * * *
36916999 AACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGGCTCAAGTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAAC
36917064 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* *
36917092 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTGAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAAC
*
36917157 GAGTTCGGATGCC
66 GAGCTCGGATGCC
36917170 CAAATATCCT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:36919592 original size:30 final size:30
Alignment explanation
Indices: 36919557--36919636 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
36919547 CAAGAAAACT
*
36919557 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* *
36919587 GAATAAAGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
* *
36919617 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
36919637 CGATACTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 2 0.05
30 39 0.91
31 2 0.05
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:36919596 original size:15 final size:15
Alignment explanation
Indices: 36919557--36919627 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
36919547 CAAGAAAACT
36919557 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
36919572 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
36919587 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
36919602 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
36919617 GGATAAAGAAA
1 GAATAAAGAAA
36919628 CCCAAGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:36919636 original size:15 final size:15
Alignment explanation
Indices: 36919559--36919636 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
36919549 AGAAAACTGA
36919559 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
36919574 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
36919588 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
36919603 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
36919619 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
36919634 ATA
1 ATA
36919637 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:36922617 original size:46 final size:46
Alignment explanation
Indices: 36922558--36922719 Score: 184
Period size: 46 Copynumber: 3.5 Consensus size: 46
36922548 GCCCATAAGC
36922558 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATCCATATGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATCCATATGT
* * * * *
36922604 GAACTCGGACTCAACTCAACGAGCTC-GG-ATGCCTAGTTACATCTCT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTA--TCCATATGT
* * * * * *
36922650 CGAACTTGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATCCATATGT
36922697 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
36922720 TTTGGATGCC
Statistics
Matches: 93, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
44 5 0.05
45 2 0.02
46 53 0.57
47 28 0.30
48 1 0.01
49 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATCCATATGT
Found at i:36922716 original size:93 final size:93
Alignment explanation
Indices: 36922557--36922729 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
36922547 CGCCCATAAG
* * *
36922557 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATCCATATGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36922622 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * *
36922650 CGAACTTGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
36922715 ACGAGTTTGGATGCC
66 ACGAGCTCGGATGCC
36922730 CAAATATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:36927638 original size:28 final size:30
Alignment explanation
Indices: 36927606--36927662 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 30
36927596 ATACATTTCA
*
36927606 CATATTCTCT-ATTCATTTG-CACATATAG
1 CATATTCTCTCATACATTTGTCACATATAG
* *
36927634 CATATTTTCTCATACTTTTGTCACATATA
1 CATATTCTCTCATACATTTGTCACATATA
36927663 ATCACTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 9 0.38
29 7 0.29
30 8 0.33
ACGTcount: A:0.28, C:0.21, G:0.05, T:0.46
Consensus pattern (30 bp):
CATATTCTCTCATACATTTGTCACATATAG
Found at i:36927901 original size:43 final size:42
Alignment explanation
Indices: 36927852--36927950 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 42
36927842 TCCAAGACCT
36927852 GGTCTTACATGTAATCAAATATCGA-CCCCATTGTCCCAGACAG
1 GGTCTTACATGTAATCAAATA-CGATCCCCA-TGTCCCAGACAG
* * * ** *
36927895 GGTCTTACACGAAATCAAATACGATGCTGATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATACGATCCCCATGTCCCAGACAG
*
36927937 GGTTTTACATGTAA
1 GGTCTTACATGTAA
36927951 ATCATAAGTC
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 25 0.54
43 21 0.46
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACGATCCCCATGTCCCAGACAG
Found at i:36927953 original size:43 final size:43
Alignment explanation
Indices: 36927839--36927954 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
36927829 TACAATGCCA
* *
36927839 ATGTCCAAGACCTGGTCTTACATGT-AATCAAATATCGACCCC
1 ATGTCCCAGACATGGTCTTACATGTAAATCAAATATCGACCCC
* * * **
36927881 ATTGTCCCAGACAGGGTCTTACACG-AAATCAAATA-CGATGCTG
1 A-TGTCCCAGACATGGTCTTACATGTAAATCAAATATCGA-CCCC
*
36927924 ATGTCCCAGACATGGTTTTACATGTAAATCA
1 ATGTCCCAGACATGGTCTTACATGTAAATCA
36927955 TAAGTCAATG
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
42 24 0.40
43 36 0.60
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGTCCCAGACATGGTCTTACATGTAAATCAAATATCGACCCC
Found at i:36935017 original size:27 final size:27
Alignment explanation
Indices: 36934752--36935037 Score: 312
Period size: 27 Copynumber: 10.7 Consensus size: 27
36934742 TTACACTACA
* * * *
36934752 AGGGTATTTTGATAATTGTAC-AGTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
*
36934779 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
36934806 AGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* **
36934833 AGGGTATTTCGACAATTTTACAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
36934860 AGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
36934887 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
36934914 ATGATA-TTCAATAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
36934939 ATGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
36934966 AGGGTATTTC-AGTAATTATACAAACCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
36934993 AGGGTATTTCGATAAATTTACAAA-CTG
1 AGGGTATTTCGATAATTTTACAAATC-G
* *
36935020 GGGGTATTTCGGTAATTT
1 AGGGTATTTCGATAATTT
36935038 CTCTTTATTA
Statistics
Matches: 226, Mismatches: 27, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
25 10 0.04
26 27 0.12
27 186 0.82
28 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:36935440 original size:27 final size:28
Alignment explanation
Indices: 36935354--36935444 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
36935344 TAGCCCCTTT
* * * *
36935354 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCAAATAGCCCATC
* * *
36935382 AAGCCTAATCACATTCATATAGCCCATC
1 AGGCCCAATCACATTCAAATAGCCCATC
36935410 AGGCCCAATCACATTCAAAT-GCCCATC
1 AGGCCCAATCACATTCAAATAGCCCATC
36935437 AGGCCCAA
1 AGGCCCAA
36935445 CTACTTCTCA
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 15 0.28
28 39 0.72
ACGTcount: A:0.31, C:0.36, G:0.13, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCAAATAGCCCATC
Found at i:36938334 original size:27 final size:27
Alignment explanation
Indices: 36938260--36938336 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
36938250 AAAAATAATC
* * * * *
36938260 ATTTTACCCTATAGGGGTATGTCAGTC
1 ATTTTACACTACAAGGGTATTTCAGTA
* *
36938287 ATTTTACACTACTAGGGTATTTTAGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
36938314 ATTTTACACTACAAGGGTATTTC
1 ATTTTACACTACAAGGGTATTTC
36938337 GATAAATTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAGTA
Found at i:36938358 original size:27 final size:27
Alignment explanation
Indices: 36938327--36938586 Score: 255
Period size: 27 Copynumber: 9.7 Consensus size: 27
36938317 TTACACTACA
36938327 AGGGTATTTCGATAAATTTT-CAAATTG
1 AGGGTATTTCGAT-AATTTTACAAATTG
* *
36938354 GGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATTG
* **
36938381 AGGGTATTTCAATAATTTTACAAATCAA
1 AGGGTATTTCGATAATTTTACAAAT-TG
*
36938409 AGGTGT-TTTAG-TAATTTTACAAATTG
1 AGG-GTATTTCGATAATTTTACAAATTG
* * *
36938435 AGGGTATTTCGGTAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATTG
* *
36938462 AGGGTATTT-TAGTAATTTCAC-AATTG
1 AGGGTATTTCGA-TAATTTTACAAATTG
*
36938488 AGGGTATTT-TAGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATTG
* **
36938515 AGGGTATTT-TAGTAATTTTACAAACCG
1 AGGGTATTTCGA-TAATTTTACAAATTG
**
36938542 AGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATTG
*
36938569 AGGGTATTTCGGTAATTT
1 AGGGTATTTCGATAATTT
36938587 CTCTTTACTA
Statistics
Matches: 201, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
25 2 0.01
26 37 0.18
27 153 0.76
28 7 0.03
29 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATTG
Found at i:36938385 original size:54 final size:54
Alignment explanation
Indices: 36938300--36938586 Score: 314
Period size: 54 Copynumber: 5.3 Consensus size: 54
36938290 TTACACTACT
* ** *
36938300 AGGGTATTTTAGTAATTTTAC-ACTACAAGGGTATTTCGATAAATTTT-CAAATTG
1 AGGGTATTTTAGTAATTTTACAAAT-TGAGGGTATTTCGAT-AATTTTACAAATCG
* * * * *
36938354 GGGGT-GTTTCGATAATTTTACAAATTGAGGGTATTTCAATAATTTTACAAATCA
1 AGGGTATTTTAG-TAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAATCG
* * * *
36938408 AAGGTGTTTTAGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAATCG
1 AGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAATCG
* * *
36938462 AGGGTATTTTAGTAATTTCAC-AATTGAGGGTATTT-TAGTAATTTTACAAATTG
1 AGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCGA-TAATTTTACAAATCG
** *
36938515 AGGGTATTTTAGTAATTTTACAAACCGAGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAATCG
**
36938569 AGGGTATTTCGGTAATTT
1 AGGGTATTTTAGTAATTT
36938587 CTCTTTACTA
Statistics
Matches: 194, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
53 57 0.29
54 130 0.67
55 7 0.04
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAATCG
Found at i:36938385 original size:81 final size:81
Alignment explanation
Indices: 36938300--36938586 Score: 302
Period size: 81 Copynumber: 3.6 Consensus size: 81
36938290 TTACACTACT
* * *
36938300 AGGGTATTTTAGTAATTTTAC-ACTACAAGGGTATTTCGATAAATTTT-CAAATTGGGGGTGTTT
1 AGGGTATTTTAGTAATTTTACAAAT-CAAGGGTATTTCGAT-AATTTTACAAATTGAGGGTATTT
*
36938363 CGATAATTTTACAAATTG
64 CGATAATTTTACAAATCG
* * *
36938381 AGGGTATTTCAATAATTTTACAAATCAAAGGTGT-TTTAG-TAATTTTACAAATTGAGGGTATTT
1 AGGGTATTTTAGTAATTTTACAAATC-AAGG-GTATTTCGATAATTTTACAAATTGAGGGTATTT
* *
36938444 CGGTAATTTCACAAATCG
64 CGATAATTTTACAAATCG
* ** *
36938462 AGGGTATTTTAGTAATTTCAC-AATTGAGGGTATTT-TAGTAATTTTACAAATTGAGGGTATTT-
1 AGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGA-TAATTTTACAAATTGAGGGTATTTC
* *
36938524 TAGTAATTTTACAAACCG
65 GA-TAATTTTACAAATCG
* *
36938542 AGGGTA-TTTCGATAATTTTACAAATCAAGGGTATTTCGGTAATTT
1 AGGGTATTTTAG-TAATTTTACAAATCAAGGGTATTTCGATAATTT
36938587 CTCTTTACTA
Statistics
Matches: 170, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
78 2 0.01
79 10 0.06
80 60 0.35
81 86 0.51
82 10 0.06
83 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
AGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCG
ATAATTTTACAAATCG
Found at i:36938526 original size:107 final size:107
Alignment explanation
Indices: 36938300--36938587 Score: 330
Period size: 107 Copynumber: 2.7 Consensus size: 107
36938290 TTACACTACT
* * * * * *
36938300 AGGGTATTTTAGTAATTTTAC-ACTACAAGGGTATTTCGATAAATTTTCAAATTGGGGGT-GTTT
1 AGGGTATTTTAGTAATTTTACAAAT-CGAGGGTATTTCGAT-AATTTACAAATCGAGGGTATTTT
* *
36938363 CGATAATTTTACAAATTGAGGGTATTTCAATAATTTTACAAATCA
64 AG-TAATTTCACAAATTGAGGGTATTTCAATAATTTTACAAATCA
* * * *
36938408 AAGGTGTTTTAGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTTA
1 AGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCGATAATTT-ACAAATCGAGGGTATTTTA
* * **
36938473 GTAATTTCAC-AATTGAGGGTATTTTAGTAATTTTACAAATTG
65 GTAATTTCACAAATTGAGGGTATTTCAATAATTTTACAAATCA
* * **
36938515 AGGGTATTTTAGTAATTTTACAAACCGAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCG
1 AGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCGATAA-TTTACAAATCGAGGGTATTTTA
36938580 GTAATTTC
65 GTAATTTC
36938588 TCTTTACTAT
Statistics
Matches: 152, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
107 94 0.62
108 52 0.34
109 6 0.04
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (107 bp):
AGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCGATAATTTACAAATCGAGGGTATTTTAG
TAATTTCACAAATTGAGGGTATTTCAATAATTTTACAAATCA
Found at i:36940298 original size:27 final size:26
Alignment explanation
Indices: 36940258--36940369 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
36940248 AGCATGGCTG
* * *
36940258 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAAATAATGTGGCAGAGCCA
36940284 CCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAAATAAT-GTGGCAGAGCCA
36940312 CCAGAACAGAA-ATATGTGGCAGAGCCA
1 CCAGAACA-AATA-ATGTGGCAGAGCCA
* * *
36940339 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAAATAA-TGTGGCAGAGCCA
36940366 CCAG
1 CCAG
36940370 GACGCTTCTC
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 7 0.09
27 48 0.65
28 19 0.26
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAAATAATGTGGCAGAGCCA
Found at i:36940358 original size:54 final size:54
Alignment explanation
Indices: 36940258--36940369 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
36940248 AGCATGGCTG
* *
36940258 CCAGAACAGATAATGTGACAGAGTCACCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
* * * *
36940312 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
36940366 CCAG
1 CCAG
36940370 GACGCTTCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
Found at i:36941813 original size:24 final size:24
Alignment explanation
Indices: 36941786--36941832 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
36941776 CTAGATTTCC
**
36941786 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
36941810 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
36941833 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:36945765 original size:40 final size:40
Alignment explanation
Indices: 36945692--36945899 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
36945682 CCTTCTGGGT
* * *
36945692 TTAG-CCGGATATAGCT-ACTCGCTCAAATTCCTTCGGGAC
1 TTAGCCCGGAAATAG-TAACTCGCACAAATGCCTTCGGGAC
** * *
36945731 TTAGCCCGGTTATAGTAATTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
* *
36945771 TTAGCCTGGAAATAGCAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
*
36945811 TTAGCCCAGAAATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
*
36945851 TTAGCCTGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
36945891 TTAGCCCGG
1 TTAGCCCGG
36945900 TTATCATCCA
Statistics
Matches: 150, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 5 0.03
40 145 0.97
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:36945814 original size:80 final size:80
Alignment explanation
Indices: 36945692--36945903 Score: 327
Period size: 80 Copynumber: 2.7 Consensus size: 80
36945682 CCTTCTGGGT
* * * * *
36945692 TTAGCC-GGATATAGCTACTCGCTCAAATTCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCAC
1 TTAGCCTGGAAATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
36945756 AATTGCCTTCGGGAC
66 AAATGCCTTCGGGAC
* **
36945771 TTAGCCTGGAAATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAATAGTAACTCGCAC
1 TTAGCCTGGAAATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
36945836 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGAC
*
36945851 TTAGCCTGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 TTAGCCTGGAAATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
36945904 CATCCAAGTA
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 6 0.05
80 113 0.95
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
TTAGCCTGGAAATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
AAATGCCTTCGGGAC
Found at i:36953977 original size:40 final size:40
Alignment explanation
Indices: 36953920--36954111 Score: 294
Period size: 40 Copynumber: 4.8 Consensus size: 40
36953910 AGATATAGCT
* * **
36953920 ACTCGCTCAAATTCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
* *
36953960 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGAAATAGCA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
*
36954000 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
*
36954040 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
* *
36954080 ACTTGCACAAATGCCTACGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
36954112 TTATCATCCG
Statistics
Matches: 140, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
Found at i:36954026 original size:80 final size:80
Alignment explanation
Indices: 36953894--36954115 Score: 311
Period size: 80 Copynumber: 2.8 Consensus size: 80
36953884 CAACCAAGTA
** * * * *
36953894 CCTTCGGGGTTTAG-CCAGATATAGCTACTCGCTCAAATTCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCAGAAATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
36953958 TAACTCGCACAATTG
66 TAACTCGCACAAATG
* * **
36953973 CCTTCGGGACTTAGCCCGGAAATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAATAG
1 CCTTCGGGACTTAGCCCAGAAATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
36954038 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* * *
36954053 CCTTCGGGACTTAGCCCAGAAATAGTAACTTGCACAAATGCCTACGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCAGAAATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
36954116 CATCCGAGTA
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
79 12 0.10
80 112 0.90
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCAGAAATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:36959738 original size:27 final size:26
Alignment explanation
Indices: 36959703--36959813 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
36959693 AGCATGGCTG
* *
36959703 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
36959729 TCAGATACAGATAATGTGGCAGAGCCA
1 CCAGA-ACAGATAATGTGGCAGAGCCA
*
36959756 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
36959783 CCAGATCCGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
36959810 CCAG
1 CCAG
36959814 GACACTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 11 0.15
27 62 0.85
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:36961057 original size:11 final size:11
Alignment explanation
Indices: 36961041--36961097 Score: 53
Period size: 11 Copynumber: 5.2 Consensus size: 11
36961031 CGGCTATGGG
36961041 GAAAAGAAGAA
1 GAAAAGAAGAA
*
36961052 GAAAAGAATAA
1 GAAAAGAAGAA
* * *
36961063 GAGGATGGAG-A
1 GA-AAAGAAGAA
*
36961074 GAAAAGAAAAA
1 GAAAAGAAGAA
36961085 GAAAAGAAGAA
1 GAAAAGAAGAA
36961096 GA
1 GA
36961098 CAATGGTCAG
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
10 3 0.09
11 28 0.82
12 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.04
Consensus pattern (11 bp):
GAAAAGAAGAA
Found at i:36961254 original size:24 final size:24
Alignment explanation
Indices: 36961227--36961297 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
36961217 CTAGATTTCC
**
36961227 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
36961251 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
36961275 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
36961298 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:36961264 original size:48 final size:48
Alignment explanation
Indices: 36961204--36961297 Score: 120
Period size: 48 Copynumber: 1.9 Consensus size: 48
36961194 ACCTCTTGTT
* **
36961204 CCTTGATCAACTCCTAGATTTCC-TCCCTTATCTGCTCCTAAATCCTATC
1 CCTTGATCAACTCCTA-A-ATCCATCCCTTATCAACTCCTAAATCCTATC
36961253 CCTT-ATCAACTCCTAAATCCTATCCCTTATCAACTCCTAAATCCT
1 CCTTGATCAACTCCTAAATCC-ATCCCTTATCAACTCCTAAATCCT
36961298 CTCCTGACAG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
46 3 0.08
47 1 0.03
48 32 0.80
49 4 0.10
ACGTcount: A:0.24, C:0.37, G:0.03, T:0.35
Consensus pattern (48 bp):
CCTTGATCAACTCCTAAATCCATCCCTTATCAACTCCTAAATCCTATC
Found at i:36980474 original size:47 final size:47
Alignment explanation
Indices: 36980404--36980838 Score: 683
Period size: 47 Copynumber: 9.3 Consensus size: 47
36980394 CCCTTCGAGA
* *
36980404 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
36980451 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36980498 CTTATCTCATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
** *
36980545 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
36980592 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36980639 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36980686 CTTGTCACATATATACACTTTCACATTCATCA-ATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
36980732 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
**
36980779 CTTATCTTATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
36980826 CTTATCACATATA
1 CTTATCACATATA
36980839 CATATCTTGT
Statistics
Matches: 354, Mismatches: 33, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 44 0.12
47 310 0.88
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:36994592 original size:37 final size:37
Alignment explanation
Indices: 36994542--36994616 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
36994532 ATTTTGATGT
36994542 ATTATGGAGAAATATGAAAGTTTGAAGTGTGTTAAAC
1 ATTATGGAGAAATATGAAAGTTTGAAGTGTGTTAAAC
36994579 ATTATGGAGAAATATGAAAGTTTGAAGTGTGTTAAAC
1 ATTATGGAGAAATATGAAAGTTTGAAGTGTGTTAAAC
36994616 A
1 A
36994617 ACTTTTCCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.32
Consensus pattern (37 bp):
ATTATGGAGAAATATGAAAGTTTGAAGTGTGTTAAAC
Found at i:37014199 original size:37 final size:37
Alignment explanation
Indices: 37014149--37014261 Score: 181
Period size: 37 Copynumber: 3.1 Consensus size: 37
37014139 CTTTAGCTCA
* *
37014149 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
37014186 GACAAAATCTCCACACGTAGTCATCGGGTCTAACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
37014223 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
37014260 GA
1 GA
37014262 ATATATTTCC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.22
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:37014477 original size:47 final size:47
Alignment explanation
Indices: 37014425--37014591 Score: 280
Period size: 47 Copynumber: 3.6 Consensus size: 47
37014415 TTCACACTAT
* * *
37014425 CCATTCGGCTTTACCACATATATGCATGTTCATATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
* * *
37014472 TCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
37014519 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
37014566 CCATTCGGCCTTATCACATATATGCA
1 CCATTCGGCCTTATCACATATATGCA
37014592 CATTCATATC
Statistics
Matches: 111, Mismatches: 9, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
Found at i:37014536 original size:22 final size:22
Alignment explanation
Indices: 37014509--37014584 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
37014499 GCTCACATTC
37014509 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
37014531 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
37014555 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
37014578 ATCACAT
1 ATCACAT
37014585 ATATGCACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:37020518 original size:46 final size:46
Alignment explanation
Indices: 37020468--37020640 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
37020458 TGGTTGAGCA
*
37020468 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
37020514 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
37020561 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
37020607 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37020641 GGGGTGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:37020624 original size:93 final size:93
Alignment explanation
Indices: 37020465--37020635 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
37020455 GGATGGTTGA
* *
37020465 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
37020530 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
37020558 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
37020623 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37020636 ACTTAGGGGT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37020902 original size:19 final size:20
Alignment explanation
Indices: 37020865--37020902 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
37020855 ATAAGGTGGT
37020865 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
37020885 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
37020903 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:37032187 original size:40 final size:40
Alignment explanation
Indices: 37032143--37032384 Score: 346
Period size: 40 Copynumber: 6.0 Consensus size: 40
37032133 CAGGATTTAA
*
37032143 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
**
37032183 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37032223 CCGGATATAGTAACTCGCACAAATGCCTTCTGAACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37032263 CCGGATATAGTAACTCGCACAAATTCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37032303 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37032343 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
37032383 CC
1 CC
37032385 CGTTATCATC
Statistics
Matches: 187, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 185 0.99
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37041789 original size:7 final size:7
Alignment explanation
Indices: 37041777--37041807 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
37041767 GCACTCGGAT
37041777 TCACATA
1 TCACATA
37041784 TCACATA
1 TCACATA
37041791 TCACATA
1 TCACATA
37041798 TACACATA
1 T-CACATA
37041806 TC
1 TC
37041808 CATGAGCTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (7 bp):
TCACATA
Found at i:37045918 original size:93 final size:93
Alignment explanation
Indices: 37045759--37045930 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
37045749 GGATGGTTGA
* * *
37045759 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
37045824 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
37045852 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
37045917 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
37045931 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37045935 original size:46 final size:46
Alignment explanation
Indices: 37045762--37045937 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
37045752 TGGTTGAGCA
* *
37045762 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * *
37045808 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
*
37045855 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
37045901 TCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37045938 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 71 0.66
47 34 0.32
48 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:37056300 original size:37 final size:37
Alignment explanation
Indices: 37056250--37056328 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37056240 TTATTACGAA
* *
37056250 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
37056287 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
37056324 GTCTT
1 GTCTT
37056329 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:37056525 original size:47 final size:47
Alignment explanation
Indices: 37056447--37056982 Score: 919
Period size: 47 Copynumber: 11.4 Consensus size: 47
37056437 CCCTTCGGGA
* * * * * * *
37056447 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37056494 CCTGTCACATATATACTCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37056541 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37056588 CTTATCACTTATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37056635 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37056682 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37056729 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37056776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37056823 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37056870 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37056917 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37056964 CTTATCACATATATACACT
1 CTTATCACATATATACACT
37056983 GTCTTGGCTG
Statistics
Matches: 468, Mismatches: 21, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 468 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37060486 original size:40 final size:40
Alignment explanation
Indices: 37060442--37060780 Score: 597
Period size: 40 Copynumber: 8.5 Consensus size: 40
37060432 TCTTCGAGGT
* * * *
37060442 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
37060482 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
37060522 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
* *
37060562 TTAGCCCGGATACATCACTAGCACAAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
37060602 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
37060642 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
37060682 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
37060722 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGGC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
37060762 TTAGCCCGGATATATCACT
1 TTAGCCCGGATATATCACT
37060781 CTCAATTCTC
Statistics
Matches: 286, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 286 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
Found at i:37062648 original size:37 final size:37
Alignment explanation
Indices: 37062598--37062676 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37062588 TTATTACGAA
* *
37062598 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
37062635 GTCTTACCCGGACAAAATTCCCACACGCAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
37062672 GTCTT
1 GTCTT
37062677 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:37062872 original size:47 final size:47
Alignment explanation
Indices: 37062794--37063329 Score: 928
Period size: 47 Copynumber: 11.4 Consensus size: 47
37062784 CCCTTCGGGA
* * * * * * *
37062794 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37062841 CCTGTCACATATATACTCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37062888 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37062935 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37062982 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37063029 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37063076 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37063123 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37063170 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37063217 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37063264 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37063311 CTTATCACATATATACACT
1 CTTATCACATATATACACT
37063330 GTCTTGGCTG
Statistics
Matches: 470, Mismatches: 19, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 470 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.