Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 116 of 255
Found at i:37082510 original size:22 final size:22
Alignment explanation
Indices: 37082485--37082530 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
37082475 AAAACATACA
37082485 ATATAGATACTAAAATATATTT
1 ATATAGATACTAAAATATATTT
37082507 ATATAGATACTAAAATATATTT
1 ATATAGATACTAAAATATATTT
37082529 AT
1 AT
37082531 GCTACGTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (22 bp):
ATATAGATACTAAAATATATTT
Found at i:37083474 original size:16 final size:15
Alignment explanation
Indices: 37083444--37083478 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
37083434 CAGTATTTAT
37083444 CTTTCTTTTTTTTTC
1 CTTTCTTTTTTTTTC
*
37083459 CTTTTTTTTCTTTTTC
1 CTTTCTTTT-TTTTTC
37083475 CTTT
1 CTTT
37083479 ATAATGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
CTTTCTTTTTTTTTC
Found at i:37100340 original size:93 final size:93
Alignment explanation
Indices: 37100211--37100381 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
37100201 GCCCCTAAGT
* * *
37100211 GAACTCAGACTTAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37100276 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
37100304 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37100369 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37100382 TCAACGATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:37100378 original size:46 final size:46
Alignment explanation
Indices: 37100206--37100378 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
37100196 AACCCGCCCC
* * * * * *
37100206 TAAGTGAACTCAGACTTAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
37100252 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
37100300 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
37100345 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37100379 TGCTCAACGA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 58 0.56
47 29 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:37100397 original size:46 final size:46
Alignment explanation
Indices: 37100204--37100397 Score: 148
Period size: 46 Copynumber: 4.2 Consensus size: 46
37100194 GTAACCCGCC
* * * * ** * *
37100204 CCTAAGTGAACTCAGACTTAACTCAACAAGCTCGGGCGTTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
37100249 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * * *** *
37100299 -TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
37100342 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACGAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAAC-AT
37100390 CCT-AGTGA
1 CCTAAGTGA
37100398 CATGTCACTT
Statistics
Matches: 115, Mismatches: 22, Indels: 23
0.72 0.14 0.14
Matches are distributed among these distances:
43 3 0.03
45 5 0.04
46 66 0.57
47 31 0.27
48 7 0.06
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:37104343 original size:13 final size:13
Alignment explanation
Indices: 37104325--37104350 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37104315 ATATTATAAT
37104325 TATTTTATGTTAA
1 TATTTTATGTTAA
37104338 TATTTTATGTTAA
1 TATTTTATGTTAA
37104351 AAATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:37105950 original size:40 final size:40
Alignment explanation
Indices: 37105866--37106042 Score: 196
Period size: 40 Copynumber: 4.4 Consensus size: 40
37105856 GGACTAAGAT
* * * * *
37105866 CCGAAGGCATTTGTGCTAGTCACTATATCCGGACTAAGAT-
1 CCGAAGGCATTCGTGCTAGTTATTATAACCGGGCTAAG-TC
* *
37105906 CCGAAGGCAATT-GTGCTAGCTATTATAACCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCTAGTTATTATAACCGGGCTAAGTC
** * *
37105946 CCGAAGGCATTCGTGCGGGTTATTATAACCGAGTTAAGTC
1 CCGAAGGCATTCGTGCTAGTTATTATAACCGGGCTAAGTC
** *
37105986 CCGAAGGCATTCGTGCGGGTTATTATAATCGGGCTAAGTC
1 CCGAAGGCATTCGTGCTAGTTATTATAACCGGGCTAAGTC
37106026 CCGAAGGCATTCGTGCT
1 CCGAAGGCATTCGTGCT
37106043 GGTTGTTACA
Statistics
Matches: 120, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 4 0.03
40 113 0.94
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCTAGTTATTATAACCGGGCTAAGTC
Found at i:37111437 original size:93 final size:93
Alignment explanation
Indices: 37111329--37111499 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
37111319 GCCCCTAAGT
* * *
37111329 GAACTCGGTCTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37111394 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
37111422 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37111487 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37111500 TCAACGATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:37111496 original size:46 final size:46
Alignment explanation
Indices: 37111324--37111496 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
37111314 AACCCGCCCC
* * * *
37111324 TAAGTGAACTCGGTCTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
37111370 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
37111418 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
37111463 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37111497 TGCTCAACGA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:37120008 original size:46 final size:48
Alignment explanation
Indices: 37119899--37120020 Score: 149
Period size: 46 Copynumber: 2.5 Consensus size: 48
37119889 TGTCTTCGAC
** * *
37119899 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATTTATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATA-TTATCTAAT
* *
37119949 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATA-TATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATTATCTAAT
*
37119995 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
37120021 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 31 0.48
48 3 0.05
50 30 0.47
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATTATCTAAT
Found at i:37138054 original size:14 final size:15
Alignment explanation
Indices: 37138037--37138065 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
37138027 ACACGAAAAT
37138037 TTCACACA-TATAAA
1 TTCACACATTATAAA
37138051 TTCACACATTATAAA
1 TTCACACATTATAAA
37138066 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:37141323 original size:47 final size:47
Alignment explanation
Indices: 37141201--37141599 Score: 555
Period size: 47 Copynumber: 8.4 Consensus size: 47
37141191 CAGCCAAGAG
37141201 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
37141248 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
37141299 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * *
37141346 TGTGAATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
37141393 AGTGTATATGTGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
37141440 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
37141487 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
37141534 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
37141581 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
37141600 TCCCGAAAGG
Statistics
Matches: 322, Mismatches: 26, Indels: 8
0.90 0.07 0.02
Matches are distributed among these distances:
47 277 0.86
51 45 0.14
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:37143727 original size:29 final size:29
Alignment explanation
Indices: 37143692--37143765 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
37143682 GTTGTGAGAT
* *
37143692 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
37143721 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
*
37143750 TGGCACTGAGTGTGCG
1 TGGCACTAAGTGTGCG
37143766 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:37144208 original size:40 final size:40
Alignment explanation
Indices: 37144080--37144395 Score: 305
Period size: 40 Copynumber: 7.9 Consensus size: 40
37144070 TTGAATGATG
** *
37144080 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* * ** * * *
37144120 TCCGGACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
37144160 TCCAGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
37144200 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
37144240 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
37144280 TCTGTGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*** ** * * * * *
37144320 TCATTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
37144360 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
37144396 AGTGTATTCG
Statistics
Matches: 233, Mismatches: 41, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
40 215 0.92
41 18 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:37147895 original size:47 final size:47
Alignment explanation
Indices: 37147576--37147931 Score: 469
Period size: 47 Copynumber: 7.4 Consensus size: 47
37147566 CAGCCAAGAG
*
37147576 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
37147623 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37147674 AGTATATGTATATATGTAATAAGGCCTAAGAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
37147725 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37147772 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
37147819 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * * *
37147866 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37147913 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
37147932 TCCCGAAAGG
Statistics
Matches: 279, Mismatches: 24, Indels: 12
0.89 0.08 0.04
Matches are distributed among these distances:
47 187 0.67
49 2 0.01
51 90 0.32
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:37148106 original size:37 final size:37
Alignment explanation
Indices: 37148050--37148128 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37148040 CCGAGCTCTA
* * *
37148050 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
37148087 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37148124 AAGAC
1 AAGAC
37148129 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37154140 original size:19 final size:19
Alignment explanation
Indices: 37154116--37154155 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
37154106 TTCCATGGAG
37154116 ATACTTCCAAGAATACTCT
1 ATACTTCCAAGAATACTCT
*
37154135 ATACTTTCAAGAATACTCT
1 ATACTTCCAAGAATACTCT
37154154 AT
1 AT
37154156 CATTGATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.35
Consensus pattern (19 bp):
ATACTTCCAAGAATACTCT
Found at i:37160085 original size:93 final size:93
Alignment explanation
Indices: 37159975--37160145 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
37159965 GCCCCTAAGT
* * * *
37159975 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTAAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTAAACTCAGACTCAACTCAA
37160040 CGAGTTCAGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
* * * *
37160068 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTAAACTCAGACTCAACTCAA
*
37160133 CGAGTTCGGATGC
66 CGAGTTCAGATGC
37160146 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTAAACTCAGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:37160135 original size:46 final size:46
Alignment explanation
Indices: 37159970--37160139 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
37159960 AACCCGCCCC
* * * * *
37159970 TAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCA
* * *
37160016 TAAGTAAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCAGA---C-A-TTCGCATCCA
* * *
37160064 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCA
*
37160109 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCAGACTCAACTCAACGAGTTC
37160140 GGATGCTCAA
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 55 0.56
47 27 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCA
Found at i:37160597 original size:30 final size:30
Alignment explanation
Indices: 37160563--37160621 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
37160553 ATTTAATATG
37160563 AACTTTGGA-AAAATTACACTTTTGCCCCTA
1 AACTTT-GACAAAATTACACTTTTGCCCCTA
* *
37160593 AACTTTTACATAATTACACTTTTGCCCCT
1 AACTTTGACAAAATTACACTTTTGCCCCT
37160622 CGGCTCGGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTGCCCCTA
Found at i:37164927 original size:24 final size:24
Alignment explanation
Indices: 37164899--37164946 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
37164889 GACTAATGCC
37164899 ATGAACTCACTAATGCCATGCCTT
1 ATGAACTCACTAATGCCATGCCTT
37164923 ATGAACTCACTAATGCCATGCCTT
1 ATGAACTCACTAATGCCATGCCTT
37164947 GGCATAGTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (24 bp):
ATGAACTCACTAATGCCATGCCTT
Found at i:37165015 original size:55 final size:53
Alignment explanation
Indices: 37164917--37165181 Score: 284
Period size: 55 Copynumber: 4.9 Consensus size: 53
37164907 ACTAATGCCA
* *
37164917 TGCCTTAT-GAACTCA-CTAATGCCATGCCTTGGCATAGTCTTACATGGGACCTT
1 TGCCTTATAGAACTCATC-AATGCCATGCCTTGGCATGGTCTTACATGGTACC-T
* * *
37164970 TGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTTTTACATGGTATCCT
1 TGCCTTATAG-AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGTA-CCT
* * * *
37165025 TGCCTTAT-GAACTCACCAATTCCATGCCTTGGCATGGTCTTACATCGAACCTT
1 TGCCTTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGTACC-T
* * * *
37165078 TGCACCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
1 TG--CCTTATAG-AACTCATCAATGCCATGCCTTGGCATGGTCTTACATG-GTACCT
* * *
37165135 TGCCTTACAAAACTTATCAATGCCATGCCTTGGCATGGTCTTACATG
1 TGCCTTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATG
37165182 ATATTCTTAT
Statistics
Matches: 177, Mismatches: 25, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
52 2 0.01
53 44 0.25
54 36 0.20
55 54 0.31
56 4 0.02
57 35 0.20
58 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (53 bp):
TGCCTTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGTACCT
Found at i:37165135 original size:110 final size:108
Alignment explanation
Indices: 37164917--37165180 Score: 393
Period size: 110 Copynumber: 2.4 Consensus size: 108
37164907 ACTAATGCCA
* * * *
37164917 TGCCTTATGAACTCACTAATGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGCCTTATAGTA
1 TGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATCGAACCTTTGCCTTATAGTA
* *
37164982 ACTCATCAATGCCATGTCTTGACATGGTTTTACATGGTATCCT
66 ACTCATCAATGCCATGTCTTGACATGGTCTTACATGATATCCT
*
37165025 TGCCTTATGAACTCACCAATTCCATGCCTTGGCATGGTCTTACATCGAACCTTTGCACCTTATAG
1 TGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATCGAACCTTTG--CCTTATAG
*
37165090 TAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
64 TAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATATCCT
** * *
37165135 TGCCTTACAAAACTTATCAATGCCATGCCTTGGCATGGTCTTACAT
1 TGCCTTA-TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACAT
37165181 GATATTCTTA
Statistics
Matches: 140, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
108 50 0.36
110 57 0.41
111 33 0.24
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (108 bp):
TGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATCGAACCTTTGCCTTATAGTA
ACTCATCAATGCCATGTCTTGACATGGTCTTACATGATATCCT
Found at i:37165196 original size:54 final size:54
Alignment explanation
Indices: 37164981--37165196 Score: 188
Period size: 54 Copynumber: 4.0 Consensus size: 54
37164971 GCCTTATAGT
* * * * * **
37164981 AACTCATCAATGCCATGTCTTGACATGGTTTTACATGGTATCCTTGCCTTA-TG
1 AACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATTCTTACCTTACAA
* * * * * *
37165034 AACTCACCAATTCCATGCCTTGGCATGGTCTTACATCGA-ACCTT-TGCACCTTATAGT
1 AACTCATCAATGCCATGCCTTGACATGGTCTTACAT-GATA--TTCT-TACCTTACA-A
* *
37165091 AACTCATCAATGCCATGTCTTGACATGGTCTTACATGAT-TTCCTTGCCTTACAA
1 AACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATT-CTTACCTTACAA
* * *
37165145 AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATTCTTATCTTAC
1 AACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATTCTTACCTTAC
37165197 CAAATGCCAT
Statistics
Matches: 129, Mismatches: 24, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
53 32 0.25
54 48 0.37
55 14 0.11
56 3 0.02
57 32 0.25
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (54 bp):
AACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATTCTTACCTTACAA
Found at i:37195661 original size:53 final size:55
Alignment explanation
Indices: 37195549--37195661 Score: 133
Period size: 53 Copynumber: 2.1 Consensus size: 55
37195539 AAGACCATAT
* *
37195549 CATGGCATTGATAAGTTACTATAAGGCAAAGGTTCCATGTAAGACCATGCCAAGG
1 CATGGCATTGATAAGTTACTATAAGGCAAAGGTACCATGTAAGACCATGCCAAGA
* * * * *
37195604 CATGGCATTGGTGAGTT-C-ATAAGGC-AAGGATACCATGTACGACCATGTCGAGA
1 CATGGCATTGATAAGTTACTATAAGGCAAAGG-TACCATGTAAGACCATGCCAAGA
37195657 CATGG
1 CATGG
37195662 AAATGGTAAG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
52 4 0.08
53 30 0.60
54 1 0.02
55 15 0.30
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.23
Consensus pattern (55 bp):
CATGGCATTGATAAGTTACTATAAGGCAAAGGTACCATGTAAGACCATGCCAAGA
Found at i:37206358 original size:46 final size:46
Alignment explanation
Indices: 37206302--37206477 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
37206292 TGGTTGAGCA
* *
37206302 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
37206348 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* *
37206395 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * **
37206441 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37206478 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 6 0.06
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:37206458 original size:93 final size:93
Alignment explanation
Indices: 37206299--37206468 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
37206289 GGATGGTTGA
* * *
37206299 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
37206364 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
** *
37206392 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
37206457 TGAGTCCGAGTT
66 TGAGTCCGAGTT
37206469 TGCTTATGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37209377 original size:40 final size:41
Alignment explanation
Indices: 37209318--37209410 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 41
37209308 ATAAATTTAG
* *
37209318 TAGGTATGGCT-TAAGAGCACATACGTTTAAGTAGATTCAA
1 TAGGTATGGCTCGAAGAGCACATACATTTAAGTAGATTCAA
* * *
37209358 TAGGTATGGCTCGAA-AGCACATACATTTTAGTAGATTTAG
1 TAGGTATGGCTCGAAGAGCACATACATTTAAGTAGATTCAA
*
37209398 TAGGTATGACTCG
1 TAGGTATGGCTCG
37209411 TTTGAGCACC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 44 0.96
41 2 0.04
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (41 bp):
TAGGTATGGCTCGAAGAGCACATACATTTAAGTAGATTCAA
Found at i:37210567 original size:20 final size:21
Alignment explanation
Indices: 37210544--37210586 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
37210534 ATAAGCATGT
*
37210544 ATTTTG-ATGTTTGATGATAG
1 ATTTTGAATGCTTGATGATAG
*
37210564 ATTTTGAATGCTTGTTGATAG
1 ATTTTGAATGCTTGATGATAG
37210585 AT
1 AT
37210587 ATACAAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.26, C:0.02, G:0.23, T:0.49
Consensus pattern (21 bp):
ATTTTGAATGCTTGATGATAG
Found at i:37216419 original size:28 final size:27
Alignment explanation
Indices: 37216386--37216484 Score: 94
Period size: 28 Copynumber: 3.6 Consensus size: 27
37216376 ATGAATATAT
37216386 GCACTATGTGTGCGAAATTATTAACCAA
1 GCACTATGTGTGCGAAATTATTAACC-A
* ** *
37216414 GCACTATGTGTGCGAGATCGGGTGTAAGC-
1 GCACTATGTGTGCGAAAT--TAT-TAACCA
*
37216443 -CACTATGTGTGCGAAATTATTAATCGA
1 GCACTATGTGTGCGAAATTATTAA-CCA
37216470 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
37216485 GATCGGGTGT
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
28 47 0.84
30 1 0.02
31 4 0.07
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (27 bp):
GCACTATGTGTGCGAAATTATTAACCA
Found at i:37216450 original size:56 final size:56
Alignment explanation
Indices: 37216387--37216521 Score: 216
Period size: 56 Copynumber: 2.4 Consensus size: 56
37216377 TGAATATATG
37216387 CACTATGTGTGCGAAATTATTAACCAAGCACTATGTGTGCGAGATCGGGTGTAAGC
1 CACTATGTGTGCGAAATTATTAACCAAGCACTATGTGTGCGAGATCGGGTGTAAGC
* * *
37216443 CACTATGTGTGCGAAATTATTAATCGAGCACTATGTGTGCGAGATCGGGTGTAAGG
1 CACTATGTGTGCGAAATTATTAACCAAGCACTATGTGTGCGAGATCGGGTGTAAGC
*
37216499 CACTGTGTGTGTGCGAAATTATT
1 CAC--TATGTGTGCGAAATTATT
37216522 TAGGGAATAT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
56 56 0.77
58 17 0.23
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (56 bp):
CACTATGTGTGCGAAATTATTAACCAAGCACTATGTGTGCGAGATCGGGTGTAAGC
Found at i:37216501 original size:28 final size:28
Alignment explanation
Indices: 37216414--37216509 Score: 99
Period size: 28 Copynumber: 3.4 Consensus size: 28
37216404 TATTAACCAA
37216414 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAGATCGGGTGTAAG
* * **
37216442 CCACTATGTGTGCGAAAT--TAT-TAATCG
1 GCACTATGTGTGCGAGATCGGGTGTAA--G
37216469 AGCACTATGTGTGCGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGGGTGTAAG
*
37216498 GCACTGTGTGTG
1 GCACTATGTGTG
37216510 TGCGAAATTA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 43 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:37217589 original size:51 final size:51
Alignment explanation
Indices: 37217514--37217620 Score: 196
Period size: 51 Copynumber: 2.1 Consensus size: 51
37217504 AGTTGTGTTA
*
37217514 TGTTAGGAAATGCCTCGTAACCCCATTCCGGTGACGGATACGGGTTAGGGG
1 TGTTAGGAAATGCCTCGTAACCCCATTCCGGAGACGGATACGGGTTAGGGG
*
37217565 TGTTAGGAAATGCCTCGTAACCCCATTCTGGAGACGGATACGGGTTAGGGG
1 TGTTAGGAAATGCCTCGTAACCCCATTCCGGAGACGGATACGGGTTAGGGG
37217616 TGTTA
1 TGTTA
37217621 CATTTGATTG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (51 bp):
TGTTAGGAAATGCCTCGTAACCCCATTCCGGAGACGGATACGGGTTAGGGG
Found at i:37221519 original size:93 final size:93
Alignment explanation
Indices: 37221406--37221670 Score: 494
Period size: 93 Copynumber: 2.8 Consensus size: 93
37221396 CGCCCATAAG
* * *
37221406 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
37221471 ACGAGTTCGGATTCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
37221499 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37221564 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
37221592 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37221657 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
37221671 TCAACCATCC
Statistics
Matches: 168, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 168 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:37221667 original size:46 final size:46
Alignment explanation
Indices: 37221399--37221667 Score: 302
Period size: 46 Copynumber: 5.8 Consensus size: 46
37221389 TGTAACCCGC
* * *
37221399 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37221445 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATTC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *
37221491 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
37221538 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
37221588 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37221631 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
37221668 TGCTCAACCA
Statistics
Matches: 190, Mismatches: 15, Indels: 36
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
44 6 0.03
45 4 0.02
46 95 0.50
47 60 0.32
48 4 0.02
49 7 0.04
50 5 0.03
51 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37224509 original size:46 final size:46
Alignment explanation
Indices: 37224459--37224634 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
37224449 TGGTTGAGCA
37224459 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
37224505 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
37224550 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
37224598 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37224635 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 59 0.55
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37224615 original size:93 final size:93
Alignment explanation
Indices: 37224456--37224627 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
37224446 GGATGGTTGA
* *
37224456 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
*
37224521 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
37224549 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
37224613 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
37224628 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37232942 original size:16 final size:17
Alignment explanation
Indices: 37232921--37232953 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
37232911 GCAAGCTATC
37232921 AGGATTTC-AAAATACA
1 AGGATTTCAAAAATACA
37232937 AGGATTTCAAAAATACA
1 AGGATTTCAAAAATACA
37232954 TATAGCATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
AGGATTTCAAAAATACA
Found at i:37234875 original size:21 final size:21
Alignment explanation
Indices: 37234833--37234875 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
37234823 CATACCAAAA
*
37234833 TCATATACCAAACTCATTCAT
1 TCATATACCAAACTCATCCAT
*
37234854 TCATATATCAAA-TCATACCAT
1 TCATATACCAAACTCAT-CCAT
37234875 T
1 T
37234876 ACCATAACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.35
Consensus pattern (21 bp):
TCATATACCAAACTCATCCAT
Found at i:37235336 original size:28 final size:28
Alignment explanation
Indices: 37235305--37235377 Score: 76
Period size: 30 Copynumber: 2.5 Consensus size: 28
37235295 TATACCTTCA
*
37235305 CATATTCACA-ATTAATTTACACATATAG
1 CATATTCACATACT-ATTTACACATATAG
*
37235333 CATATTTTCTCATACTATTTACACATATAG
1 CATA--TTCACATACTATTTACACATATAG
*
37235363 CATATTTCTCATACT
1 CATA-TTCACATACT
37235378 TATATCACAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
28 4 0.10
29 11 0.28
30 23 0.57
31 2 0.05
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (28 bp):
CATATTCACATACTATTTACACATATAG
Found at i:37235354 original size:30 final size:29
Alignment explanation
Indices: 37235319--37235377 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 29
37235309 TTCACAATTA
37235319 ATTTACACATATAGCATATTTTCTCATACT
1 ATTTACACATATAGCATA-TTTCTCATACT
37235349 ATTTACACATATAGCATATTTCTCATACT
1 ATTTACACATATAGCATATTTCTCATACT
37235378 TATATCACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.42
Consensus pattern (29 bp):
ATTTACACATATAGCATATTTCTCATACT
Found at i:37235386 original size:29 final size:30
Alignment explanation
Indices: 37235322--37235387 Score: 100
Period size: 29 Copynumber: 2.2 Consensus size: 30
37235312 ACAATTAATT
*
37235322 TACACATATAGCATATTTTCTCATACTATT
1 TACACATATAGCATATTTTCTCATACTATA
37235352 TACACATATAGCATA-TTTCTCATACT-TA
1 TACACATATAGCATATTTTCTCATACTATA
37235380 TATCACAT
1 TA-CACAT
37235388 CTCATCACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 3 0.09
29 16 0.47
30 15 0.44
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (30 bp):
TACACATATAGCATATTTTCTCATACTATA
Found at i:37242532 original size:39 final size:39
Alignment explanation
Indices: 37242481--37242655 Score: 208
Period size: 39 Copynumber: 4.5 Consensus size: 39
37242471 ATATCCAGAC
* *
37242481 TAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
* *
37242521 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
* ** *
37242560 TAAGTCCGAAGGCATTCGTGCGAGTTGTTAAATTCGGGT
1 TAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
* * * *
37242599 TATGTCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
*
37242637 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
37242656 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 22 0.18
39 90 0.76
40 7 0.06
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
Found at i:37256434 original size:47 final size:47
Alignment explanation
Indices: 37256368--37256701 Score: 517
Period size: 47 Copynumber: 7.1 Consensus size: 47
37256358 GAAATGATAG
*
37256368 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37256415 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * *
37256464 TAAGGCCTAATGGTCGATTTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
37256511 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37256558 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37256604 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
37256651 CGGGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37256698 TAAG
1 TAAG
37256702 TCCCGAAGGG
Statistics
Matches: 265, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
46 45 0.17
47 175 0.66
49 45 0.17
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:37256532 original size:96 final size:95
Alignment explanation
Indices: 37256368--37256701 Score: 496
Period size: 93 Copynumber: 3.5 Consensus size: 95
37256358 GAAATGATAG
37256368 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
37256433 GTGATGAATGTGAAAGTGTATATATATGTGA
65 GTGATGAATGTGAAAGTGTATATATATGTGA
* * *
37256464 TAAGGCCTAATGGTCGATTTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
37256529 GTGATGAATGTGAAAGTG--TATATGTGTGA
65 GTGATGAATGTGAAAGTGTATATATATGTGA
37256558 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
37256623 TGATGAATGTGAAAGTG--TATATATGTGA
66 TGATGAATGTGAAAGTGTATATATATGTGA
*** * * * * * *
37256651 CGGGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
37256702 TCCCGAAGGG
Statistics
Matches: 219, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
93 85 0.39
94 55 0.25
96 79 0.36
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTGTATATATATGTGA
Found at i:37256659 original size:140 final size:142
Alignment explanation
Indices: 37256369--37256701 Score: 517
Period size: 140 Copynumber: 2.4 Consensus size: 142
37256359 AAATGATAGT
*
37256369 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* *
37256434 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATTTGATGAATGTGAAAGT
66 TGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
37256499 GTATATGTGTGAT
130 GTATATATGTGAC
*
37256512 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAAT-GCCGATG
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
37256576 TGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 TGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
37256640 TATATATGTGAC
131 TATATATGTGAC
** * * * * * *
37256652 GGGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
37256702 TCCCGAAGGG
Statistics
Matches: 175, Mismatches: 15, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
140 96 0.55
142 24 0.14
143 55 0.31
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (142 bp):
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGAC
Found at i:37256876 original size:37 final size:37
Alignment explanation
Indices: 37256820--37256898 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37256810 CCGAGCTCTA
* *
37256820 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
37256857 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37256894 AAGAC
1 AAGAC
37256899 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37259607 original size:27 final size:27
Alignment explanation
Indices: 37259573--37259726 Score: 236
Period size: 27 Copynumber: 5.7 Consensus size: 27
37259563 TGGATAAGTT
*
37259573 GTAGAATTATCGAAATACCCCTGTAAG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
37259600 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
37259627 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
37259654 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * * *
37259681 ATAGAATTACCAAAATACCCTTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
37259708 GTAGAAATATCGAAATACC
1 GTAGAATTATCGAAATACC
37259727 TTTGAAAAAG
Statistics
Matches: 114, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAGG
Found at i:37262612 original size:27 final size:27
Alignment explanation
Indices: 37262579--37262777 Score: 211
Period size: 27 Copynumber: 7.4 Consensus size: 27
37262569 GGATAAGTTT
*
37262579 TAGAATTATCGAAATACCCCTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* *
37262606 TAGAATTACCGAAATACCCTTGTAATG
1 TAGAATTACCGAAATACCCCTGTAAGG
* ** * * *
37262633 TAGAATCATTGAAATACCCGTATAGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
37262660 TAGAATTACCGAAATACCCCTGT-AGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* * *
37262686 ATAGAATTACCAAAATACCCTTGTAGGG
1 -TAGAATTACCGAAATACCCCTGTAAGG
* *
37262714 TAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* * **
37262741 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
*
37262768 TAAAATTACC
1 TAGAATTACC
37262778 ATTTTGCCCC
Statistics
Matches: 143, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 2 0.01
27 139 0.97
28 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAAGG
Found at i:37262717 original size:81 final size:80
Alignment explanation
Indices: 37262579--37262778 Score: 249
Period size: 81 Copynumber: 2.5 Consensus size: 80
37262569 GGATAAGTTT
* * * **
37262579 TAGAATTATCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAATGTAG-AATCATT
1 TAGAATTACCGAAATACCCCTGT-AGGTAGAATTACCAAAATACCCTTGTAAGGTAGAAAT-ACC
*
37262643 GAAATACCCGTATAGGG
64 GAAATACCCCTATAGGG
*
37262660 TAGAATTACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCG
1 TAGAATTACCGAAATACCCCTGTAGG-TAGAATTACCAAAATACCCTTGTAAGGTAGAAATACCG
*
37262725 AAATACCCCTGTAGGG
65 AAATACCCCTATAGGG
* * * *
37262741 TAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 TAGAATTACCGAAATACCCCTGT-AGGTAGAATTACCA
37262779 TTTTGCCCCT
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
80 3 0.03
81 96 0.92
82 5 0.05
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (80 bp):
TAGAATTACCGAAATACCCCTGTAGGTAGAATTACCAAAATACCCTTGTAAGGTAGAAATACCGA
AATACCCCTATAGGG
Found at i:37263474 original size:27 final size:26
Alignment explanation
Indices: 37263430--37263480 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
37263420 CTCGTTGCAA
*
37263430 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
37263457 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
37263481 AGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:37268926 original size:47 final size:47
Alignment explanation
Indices: 37268848--37269208 Score: 533
Period size: 47 Copynumber: 7.6 Consensus size: 47
37268838 CCCTTCGGGA
* * * * * *
37268848 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37268895 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37268942 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37268989 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37269036 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37269085 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37269134 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37269183 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
37269209 CACAATTATC
Statistics
Matches: 291, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 150 0.52
49 141 0.48
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37269069 original size:49 final size:49
Alignment explanation
Indices: 37268848--37269208 Score: 544
Period size: 49 Copynumber: 7.6 Consensus size: 49
37268838 CCCTTCGGGA
* * * * *
37268848 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37268895 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37268942 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37268989 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37269036 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37269085 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37269134 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37269183 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
37269209 CACAATTATC
Statistics
Matches: 292, Mismatches: 18, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 139 0.48
49 152 0.52
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37277161 original size:50 final size:50
Alignment explanation
Indices: 37277086--37277185 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
37277076 ATCTGTAAAA
37277086 ATAATATAACAACCCAATTTTGGGCGTAACCGGAACAGTGGTTTCGTAAC
1 ATAATATAACAACCCAATTTTGGGCGTAACCGGAACAGTGGTTTCGTAAC
* *
37277136 ATAATATAACAACCCGATTTTGGGCGTAACTGGAACAGTGGTTTCGTAAC
1 ATAATATAACAACCCAATTTTGGGCGTAACCGGAACAGTGGTTTCGTAAC
37277186 CACTAACCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (50 bp):
ATAATATAACAACCCAATTTTGGGCGTAACCGGAACAGTGGTTTCGTAAC
Found at i:37278401 original size:48 final size:48
Alignment explanation
Indices: 37278339--37278760 Score: 412
Period size: 48 Copynumber: 8.8 Consensus size: 48
37278329 GACATTTGGG
* * * *
37278339 TGATATGTGTGCCAGTGTAATACCATGTCTGGGACATGGCATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* **
37278387 TGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTGA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* *
37278435 TGTTGTGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-CA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* *
37278482 TTGATATGTG-CCCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
1 -TGATATGAGAGCC-AGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * *
37278531 CGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * *
37278579 T-AT-TGCAAGAGTCAGTGTAAGAACAT-TTCTAGGACATGGCATCGG-CA
1 TGATATG--AGAGCCAGTGTAAGACCATGTT-TGGGACATGGCATCGGCCA
* * * * *
37278626 TTGATATGTGCA-CTAGTGTAAAACCATGTTTTGAACATGGCATCGGCCA
1 -TGATATGAG-AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * ***
37278675 -CATCATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAATC-
1 TGAT-ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * *
37278722 TCGATATGTGAGCCAATGTAAGAACATGTTTGGAACATG
1 T-GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATG
37278761 ACAACGTCAA
Statistics
Matches: 307, Mismatches: 50, Indels: 34
0.79 0.13 0.09
Matches are distributed among these distances:
46 2 0.01
47 11 0.04
48 279 0.91
49 13 0.04
50 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
Found at i:37278522 original size:144 final size:143
Alignment explanation
Indices: 37278339--37278717 Score: 530
Period size: 144 Copynumber: 2.6 Consensus size: 143
37278329 GACATTTGGG
* * *
37278339 TGATATGTGTGCC-AGTGTAATACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCCAGT
1 TGATATGTG-CCCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCA-GATATGAGAGCCAGT
** * ** * *
37278403 GTAAGACCATGTTTGGAACATGGCATCGGTGATGTTGTGAGAGCCAGTGTAAGACCATGTT-TGG
64 GTAAGACCATGTTTGGAACATGGCATCGGCAATATTGCAAGAGCCAGTGTAAGAACAT-TTCTAG
37278467 GACATGGCATCGGCAT
128 GACATGGCATCGGCAT
*
37278483 TGATATGTGCCCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
1 TGATATGTGCCCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCA-GATATGAGAGCCAGTG
*
37278548 TAAGACCATGTTTGGAACATGGCATCGGCAATATTGCAAGAGTCAGTGTAAGAACATTTCTAGGA
65 TAAGACCATGTTTGGAACATGGCATCGGCAATATTGCAAGAGCCAGTGTAAGAACATTTCTAGGA
37278613 CATGGCATCGGCAT
130 CATGGCATCGGCAT
* * * *
37278627 TGATATGTGCACTAGTGTAAAACCATGTTTTGAACATGGCATCGGCCACATCATGAGAGCCAGTG
1 TGATATGTGCCCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCAGAT-ATGAGAGCCAGTG
*
37278692 TAAGACCATGTCTAGG-ACATGGCATC
65 TAAGACCATGT-TTGGAACATGGCATC
37278718 AATCTCGATA
Statistics
Matches: 213, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
143 6 0.03
144 204 0.96
145 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (143 bp):
TGATATGTGCCCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCAGATATGAGAGCCAGTGT
AAGACCATGTTTGGAACATGGCATCGGCAATATTGCAAGAGCCAGTGTAAGAACATTTCTAGGAC
ATGGCATCGGCAT
Found at i:37278742 original size:144 final size:141
Alignment explanation
Indices: 37278352--37278760 Score: 488
Period size: 144 Copynumber: 2.8 Consensus size: 141
37278342 TATGTGTGCC
* * *
37278352 AGTGTAATACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAAACCATGTTTGGGACATGGCATCGGCCA-CATATGAGAGCCAGTGTAAGACCATGTTT
** * * * *
37278417 GGAACATGGCATCGGTGATGTTGTGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
65 GGAACATGGCATCAAT-ATGATATG-GAGCCAGTGTAAGAACATGTTTAGGACATGGCATCGGCA
*
37278482 TTGATATGTGCCCT
128 TTGATATGTGCACT
*
37278496 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAAACCATGTTTGGGACATGGCATCGGCCAC-ATATGAGAGCCAGTGTAAGACCATGTTT
*
37278561 GGAACATGGCATCGGCAATATTGCA-A--GAGTCAGTGTAAGAACAT-TTCTAGGACATGGCATC
65 GGAACATGGCAT---CAATA-TG-ATATGGAGCCAGTGTAAGAACATGTT-TAGGACATGGCATC
37278622 GGCATTGATATGTGCACT
124 GGCATTGATATGTGCACT
* *
37278640 AGTGTAAAACCATGTTTTGAACATGGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAAACCATGTTTGGGACATGGCATCGGCCACAT-ATGAGAGCCAGTGTAAGACCATGT-T
* * *
37278705 AGG-ACATGGCATCAATCTCGATATGTGAGCCAATGTAAGAACATGTTT-GGAACATG
64 TGGAACATGGCATCAATAT-GATATG-GAGCCAGTGTAAGAACATGTTTAGG-ACATG
37278761 ACAACGTCAA
Statistics
Matches: 231, Mismatches: 18, Indels: 32
0.82 0.06 0.11
Matches are distributed among these distances:
140 2 0.01
141 6 0.03
143 6 0.03
144 207 0.90
145 5 0.02
146 1 0.00
147 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (141 bp):
AGTGTAAAACCATGTTTGGGACATGGCATCGGCCACATATGAGAGCCAGTGTAAGACCATGTTTG
GAACATGGCATCAATATGATATGGAGCCAGTGTAAGAACATGTTTAGGACATGGCATCGGCATTG
ATATGTGCACT
Found at i:37281156 original size:29 final size:30
Alignment explanation
Indices: 37281123--37281179 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37281113 AAATTGATTT
*
37281123 TCAAA-CCTAGGGGTAAAATGGTCATTTTG
1 TCAAAGCCTAGGGGCAAAATGGTCATTTTG
*
37281152 TCAAAGTCTAGGGGCAAAATGGTCATTT
1 TCAAAGCCTAGGGGCAAAATGGTCATTT
37281180 CACATTGTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
TCAAAGCCTAGGGGCAAAATGGTCATTTTG
Found at i:37281612 original size:46 final size:46
Alignment explanation
Indices: 37281510--37281683 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
37281500 ACATTATCAG
* *
37281510 AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCATTGAGAC-TA
1 AGCCAGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
* * *
37281557 GTGCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCGAGACGTA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
* * *
37281604 AGCCAGTGTAAGACATGTCCGGGACATGCATCGG-CTACAAGATGT-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTA
*
37281649 -GTCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
37281684 TACAAATATG
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
44 11 0.10
45 15 0.14
46 56 0.51
47 17 0.16
48 10 0.09
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
Found at i:37284180 original size:46 final size:46
Alignment explanation
Indices: 37284113--37284284 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
37284103 AACCCGCCCC
*
37284113 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
37284159 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
37284207 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
37284252 TAGGTGAA-TACGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACT-CGGACTCAACTCAACGAGTTCGG
37284285 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:37284230 original size:93 final size:93
Alignment explanation
Indices: 37284118--37284288 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
37284108 GCCCCTAAGT
* *
37284118 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACT-CGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAA-TACGGACTCAACTCA
37284182 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
37284211 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAATACGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAATACGGACTCAACTCAA
37284276 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37284289 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAATACGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37284742 original size:30 final size:30
Alignment explanation
Indices: 37284708--37284767 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37284698 ATTTAATACG
37284708 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
37284738 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
37284768 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:37287915 original size:30 final size:30
Alignment explanation
Indices: 37287857--37287915 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
37287847 ATTTTCGAAC
* ***
37287857 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTCACCAAAGT
37287887 CTAGGGGCAAAATGGTCATTTCACCAAAG
1 CTAGGGGCAAAATGGTCATTTCACCAAAG
37287916 AAGTGAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTCACCAAAGT
Found at i:37288366 original size:46 final size:44
Alignment explanation
Indices: 37288257--37288422 Score: 156
Period size: 46 Copynumber: 3.6 Consensus size: 44
37288247 CATTATGAGA
* * * *
37288257 GCCAGTGTAAGACCATGTTTGGGACATCGCATCGACATTGAGACGA-GT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--T-ACAAGATGT
* * *
37288305 GCTAGTGTAAGACATGTCTGGGACATGCTTTGGCCT-CAAGATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATGT
*
37288349 AAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCTACAAGATGT
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGT
*
37288395 GTCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
37288423 GCATACCCCA
Statistics
Matches: 99, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
43 3 0.03
44 13 0.13
45 17 0.17
46 41 0.41
47 14 0.14
48 11 0.11
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGT
Found at i:37290252 original size:34 final size:35
Alignment explanation
Indices: 37290203--37290281 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
37290193 GAATAGCACA
*
37290203 TTCAAAATAACTTCACATAAAACCGAATATAT-AAG
1 TTCAATATAACTTCACATAAAACCGAATA-ATCAAG
** *
37290238 TTCAATATAA-TTCACATGTAATCGAATAATCAAG
1 TTCAATATAACTTCACATAAAACCGAATAATCAAG
37290272 TTCAATATAA
1 TTCAATATAA
37290282 GCTTACCTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
33 2 0.05
34 28 0.72
35 9 0.23
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.30
Consensus pattern (35 bp):
TTCAATATAACTTCACATAAAACCGAATAATCAAG
Found at i:37291094 original size:30 final size:29
Alignment explanation
Indices: 37291060--37291124 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
37291050 ATCCTCATAC
*
37291060 TAGTCCAT-ATATTTCATTTATTTTT-CATTT
1 TAGTCCATCA-ATTT-A-TTATTTTTACAATT
*
37291090 TAGTCCTTCAATTTATTATTTTTACAATT
1 TAGTCCATCAATTTATTATTTTTACAATT
37291119 TAGTCC
1 TAGTCC
37291125 TATTAACTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.26
29 11 0.35
30 11 0.35
31 1 0.03
ACGTcount: A:0.25, C:0.15, G:0.05, T:0.55
Consensus pattern (29 bp):
TAGTCCATCAATTTATTATTTTTACAATT
Found at i:37296237 original size:19 final size:19
Alignment explanation
Indices: 37296213--37296268 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
37296203 GTATTCGATT
37296213 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
37296232 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
37296248 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
37296267 AC
1 AC
37296269 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:37296284 original size:33 final size:35
Alignment explanation
Indices: 37296211--37296277 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
37296201 GAGTATTCGA
*
37296211 TTACATGTGAATTTATATTGAACATGTGTATTTAG
1 TTACATGTGAATTTATATTGAACATGTATATTTAG
*
37296246 TTACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TTACATGTGAATTTATATTGAACATGTATATTTA
37296278 TATACATTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.23
34 1 0.03
35 22 0.73
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (35 bp):
TTACATGTGAATTTATATTGAACATGTATATTTAG
Found at i:37297089 original size:40 final size:40
Alignment explanation
Indices: 37297030--37297236 Score: 351
Period size: 40 Copynumber: 5.2 Consensus size: 40
37297020 GAACTAAGAT
* * *
37297030 CCGAAGGCATTTGTACTAGTTACTATATCCAGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
**
37297070 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
37297110 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
37297150 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
37297190 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
37297230 CCGAAGG
1 CCGAAGG
37297237 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 158 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
Found at i:37303986 original size:19 final size:19
Alignment explanation
Indices: 37303962--37304017 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
37303952 GTATTCGACT
37303962 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
37303981 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
37303997 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
37304016 AC
1 AC
37304018 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:37304033 original size:33 final size:35
Alignment explanation
Indices: 37303961--37304026 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
37303951 AGTATTCGAC
*
37303961 TACATGTGAATTTATATTGAACATGTGTATTTAGT
1 TACATGTGAATTTATATTGAACATGTATATTTAGT
*
37303996 TACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TACATGTGAATTTATATTGAACATGTATATTTA
37304027 TATACATTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.24
34 1 0.03
35 21 0.72
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (35 bp):
TACATGTGAATTTATATTGAACATGTATATTTAGT
Found at i:37304833 original size:40 final size:40
Alignment explanation
Indices: 37304778--37304984 Score: 378
Period size: 40 Copynumber: 5.2 Consensus size: 40
37304768 GAACTAAGAT
37304778 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
*
37304818 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
37304858 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
37304898 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
*
37304938 CCGAAGGCATTTGTGCCAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
37304978 CCGAAGG
1 CCGAAGG
37304985 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 162 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
Found at i:37311695 original size:19 final size:19
Alignment explanation
Indices: 37311671--37311726 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
37311661 GTATTCGACT
37311671 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
37311690 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
37311706 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
37311725 AC
1 AC
37311727 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:37311742 original size:33 final size:35
Alignment explanation
Indices: 37311670--37311735 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
37311660 AGTATTCGAC
*
37311670 TACATGTGAATTTATATTGAACATGTGTATTTAGT
1 TACATGTGAATTTATATTGAACATGTATATTTAGT
*
37311705 TACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TACATGTGAATTTATATTGAACATGTATATTTA
37311736 TATACATTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.24
34 1 0.03
35 21 0.72
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (35 bp):
TACATGTGAATTTATATTGAACATGTATATTTAGT
Found at i:37312542 original size:40 final size:40
Alignment explanation
Indices: 37312487--37312692 Score: 376
Period size: 40 Copynumber: 5.2 Consensus size: 40
37312477 GAACTAAGAT
37312487 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
*
37312527 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
37312567 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
37312607 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
*
37312647 CCGAAGGCATTTGTGCCAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
37312687 CCGAAG
1 CCGAAG
37312693 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 161 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
Found at i:37319436 original size:19 final size:19
Alignment explanation
Indices: 37319412--37319467 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
37319402 GTATTCGACT
37319412 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
37319431 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
37319447 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
37319466 AC
1 AC
37319468 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:37319483 original size:33 final size:35
Alignment explanation
Indices: 37319411--37319476 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
37319401 AGTATTCGAC
*
37319411 TACATGTGAATTTATATTGAACATGTGTATTTAGT
1 TACATGTGAATTTATATTGAACATGTATATTTAGT
*
37319446 TACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TACATGTGAATTTATATTGAACATGTATATTTA
37319477 TATACATTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.24
34 1 0.03
35 21 0.72
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (35 bp):
TACATGTGAATTTATATTGAACATGTATATTTAGT
Found at i:37320283 original size:40 final size:40
Alignment explanation
Indices: 37320228--37320433 Score: 358
Period size: 40 Copynumber: 5.2 Consensus size: 40
37320218 GAACTAAGAT
37320228 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
37320268 CCGAAGGCAATTGTGCTAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
37320308 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
37320348 CCAAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
37320388 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
37320428 CCGAAG
1 CCGAAG
37320434 CTACTTGGGT
Statistics
Matches: 158, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 158 1.00
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
Found at i:37324012 original size:44 final size:43
Alignment explanation
Indices: 37323960--37324057 Score: 126
Period size: 44 Copynumber: 2.3 Consensus size: 43
37323950 TCTGATATAT
*
37323960 CATGTAAGACCGTGTCTGGGACACAGGCTTCAAT-TTGAGATTTA
1 CATGTAAGACCGTGTCTGGGACACAGGCATCAATATTGA-A-TTA
* * * *
37324004 CGTGTAAGACCTTGTCTGGGACAGAGGCATCGATATTGAATTA
1 CATGTAAGACCGTGTCTGGGACACAGGCATCAATATTGAATTA
37324047 CATGTAAGACC
1 CATGTAAGACC
37324058 ACGTCCAGGA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 13 0.28
44 30 0.64
45 4 0.09
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (43 bp):
CATGTAAGACCGTGTCTGGGACACAGGCATCAATATTGAATTA
Found at i:37342241 original size:19 final size:21
Alignment explanation
Indices: 37342195--37342241 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
37342185 CTATCATTTA
*
37342195 AAATATA-TCTAATTAGACTC
1 AAATATATTCTAATTAGACCC
37342215 AAAT-TATTC-AATT-GACCC
1 AAATATATTCTAATTAGACCC
37342233 AAATATATT
1 AAATATATT
37342242 TTGGCAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 8 0.33
19 10 0.42
20 6 0.25
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (21 bp):
AAATATATTCTAATTAGACCC
Found at i:37358944 original size:39 final size:40
Alignment explanation
Indices: 37358872--37359088 Score: 286
Period size: 39 Copynumber: 5.6 Consensus size: 40
37358862 TATTCGAATG
* *
37358872 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
37358912 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTA-TTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
37358950 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
37358989 ATATCCGGGCTAAGTCCCG-AGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
37359028 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
37359068 ATATCC-GGCTAAAT-CCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37359089 TACTTGGGTT
Statistics
Matches: 159, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
37 8 0.05
38 35 0.22
39 68 0.43
40 46 0.29
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:37359017 original size:77 final size:79
Alignment explanation
Indices: 37358872--37359088 Score: 309
Period size: 77 Copynumber: 2.8 Consensus size: 79
37358862 TATTCGAATG
* *
37358872 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCGAAGGCAT
*
37358937 TTGTGCTATT-ATT
66 TTGTGCTATTGACT
*
37358950 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCG-AGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGT-CCGAAGGCA
37359013 TTTGTGCTATTGACT
65 TTTGTGCTATTGACT
* * * *
37359028 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTATATCCGGGCTAAGTCCGAAGG
37359089 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 8, Indels: 10
0.88 0.06 0.07
Matches are distributed among these distances:
77 64 0.51
78 27 0.21
79 33 0.26
80 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCGAAGGCAT
TTGTGCTATTGACT
Found at i:37372890 original size:48 final size:48
Alignment explanation
Indices: 37372774--37373039 Score: 193
Period size: 48 Copynumber: 5.6 Consensus size: 48
37372764 CGAAATCGAG
* * *
37372774 GCCGACGCCATGTCCCA-AACATGGTCTTACACT-AGCTCTCACATATCCGT
1 GCCGATGCCATGTCCCAGAA-ATGGTCTTACACTGATCTCTCTCATA---GT
37372824 GCCGATGCCATGTCCCAGAAATGGTCTTACACTGATAC-CTCT-ATACGT
1 GCCGATGCCATGTCCCAGAAATGGTCTTACACTGAT-CTCTCTCATA-GT
* * * *
37372872 CCCGATGCCATGTCCCAGATATGGTCTTACATTGA-CACATCTCATAGT
1 GCCGATGCCATGTCCCAGAAATGGTCTTACACTGATCTC-TCTCATAGT
* * *
37372920 --CGATG-CATGTCCCAGACAT-GTTTTACACTAGCTCTCGTCTCA-A-T
1 GCCGATGCCATGTCCCAGAAATGGTCTTACACT-GATCTC-TCTCATAGT
* * *
37372964 GCCGATGCCATGTCCCAGACATGGTCTTACACTG-GCTCTCATAAT-GT
1 GCCGATGCCATGTCCCAGAAATGGTCTTACACTGATCTCTC-TCATAGT
* *
37373011 GGCTGATG-CATGTCCCAGACAT-GTCTTAC
1 -GCCGATGCCATGTCCCAGAAATGGTCTTAC
37373040 GCTAGCGCAC
Statistics
Matches: 184, Mismatches: 16, Indels: 36
0.78 0.07 0.15
Matches are distributed among these distances:
44 9 0.05
45 17 0.09
46 30 0.16
47 31 0.17
48 55 0.30
49 3 0.02
50 32 0.17
51 6 0.03
52 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGAAATGGTCTTACACTGATCTCTCTCATAGT
Found at i:37372979 original size:92 final size:93
Alignment explanation
Indices: 37372774--37373045 Score: 247
Period size: 92 Copynumber: 2.9 Consensus size: 93
37372764 CGAAATCGAG
* * * *
37372774 GCCGACGCCATGTCCCAAACATGGTCTTACACT-AGCTCTCACATATCCGTGCCGATGCCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATA-AT--GTGCTGATG-CATGTC
* *
37372838 CCAGAAATGGTCTTACACT-GATAC-C-TCT-ATACGT
61 CCAGACAT-GTCTTACACTAGCT-CTCGTCTCA-A--T
* * *
37372872 CCCGATGCCATGTCCCAGATATGGTCTTACATTGACACATCTCAT-A-GT-C-GATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG--AC-TCTCATAATGTGCTGATGCATGTCCC
*
37372933 AGACATGTTTTACACTAGCTCTCGTCTCAAT
63 AGACATGTCTTACACTAGCTCTCGTCTCAAT
*
37372964 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGT-GCTGATGCATGTCCCAG
*
37373029 ACATGTCTTACGCTAGC
65 ACATGTCTTACACTAGC
37373046 GCACATATAA
Statistics
Matches: 146, Mismatches: 15, Indels: 30
0.76 0.08 0.16
Matches are distributed among these distances:
89 6 0.04
90 2 0.01
91 2 0.01
92 42 0.29
93 17 0.12
94 37 0.25
95 2 0.01
96 2 0.01
98 28 0.19
99 1 0.01
100 1 0.01
101 6 0.04
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGCTGATGCATGTCCCAGA
CATGTCTTACACTAGCTCTCGTCTCAAT
Found at i:37373019 original size:140 final size:139
Alignment explanation
Indices: 37372782--37373039 Score: 317
Period size: 140 Copynumber: 1.8 Consensus size: 139
37372772 AGGCCGACGC
**
37372782 CATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCCGTGCCGATGCCATGTCCCAGAAATG
1 CATGTCCCAAACATGGTCTTACACTAGCTCT-ACATATCAATGCCGATGCCATGTCCCAGAAATG
*
37372847 GTCTTACACTGATACCTCTATACGTCCCGATGCCATGTCCCAGATATGGTCTTACATTGACACAT
65 GTCTTACACTGATA-CTCTATACGTCCCGATG-CATGTCCCAGACAT-GTCTTACATTGACACAT
37372912 CTCATAGTCGATG
127 CTCATAGTCGATG
* * * * *
37372925 CATGTCCCAGACAT-GTTTTACACTAGCTCT-CGTCTCAATGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAGAAATGG
* * * *
37372988 TCTTACACTG--GCTCTCATAATGTGGCTGATGCATGTCCCAGACATGTCTTAC
66 TCTTACACTGATACTCT-AT-ACGT-CCCGATGCATGTCCCAGACATGTCTTAC
37373040 GCTAGCGCAC
Statistics
Matches: 100, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
137 4 0.04
138 9 0.09
139 16 0.16
140 43 0.43
142 15 0.15
143 13 0.13
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (139 bp):
CATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAGAAATGG
TCTTACACTGATACTCTATACGTCCCGATGCATGTCCCAGACATGTCTTACATTGACACATCTCA
TAGTCGATG
Found at i:37383226 original size:29 final size:29
Alignment explanation
Indices: 37383187--37383285 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 29
37383177 AGTTACTGAG
37383187 GATGGCACTTAGTGTGCGAAACATCCAGA
1 GATGGCACTTAGTGTGCGAAACATCCAGA
* * * *
37383216 AATGGCTCTTAGTGAGC-AAATTAT-C-GA
1 GATGGCACTTAGTGTGCGAAA-CATCCAGA
*
37383243 GATGGCACTTAGTGTGCGAGACATCCAG-
1 GATGGCACTTAGTGTGCGAAACATCCAGA
37383271 GATGGCACTTAGTGT
1 GATGGCACTTAGTGT
37383286 ATGATACATT
Statistics
Matches: 57, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
27 18 0.32
28 22 0.39
29 17 0.30
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (29 bp):
GATGGCACTTAGTGTGCGAAACATCCAGA
Found at i:37383305 original size:28 final size:27
Alignment explanation
Indices: 37383238--37383307 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 27
37383228 TGAGCAAATT
*
37383238 ATCGAGATGGCACTTAGTGTGCGAGAC
1 ATCGAGATGGCACTTAGTGTACGAGAC
* * *
37383265 ATCCAGGATGGCACTTAGTGTATGATAC
1 ATCGA-GATGGCACTTAGTGTACGAGAC
*
37383293 ATTCGAGAAGGCACT
1 A-TCGAGATGGCACT
37383308 AGGTGTGTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
27 4 0.11
28 28 0.80
29 3 0.09
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (27 bp):
ATCGAGATGGCACTTAGTGTACGAGAC
Found at i:37404861 original size:40 final size:40
Alignment explanation
Indices: 37404766--37404904 Score: 181
Period size: 41 Copynumber: 3.4 Consensus size: 40
37404756 CGTTCCAAAA
* * * ** *
37404766 AAAACGCCGGTAAAAATAGAGCATTCGCGGCATTTTTTA-CT
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGC--GCTTTAGGT
*
37404807 AAAACGCTGCTAAAAACAGAGCATTAGCGGCGCTTTAGGT
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTAGGT
37404847 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGGT
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTAGGT
37404888 AAAACGCCGCTAAAAAC
1 AAAACGCCGCTAAAAAC
37404905 CCCATAACCC
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 4 0.05
40 17 0.19
41 67 0.76
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (40 bp):
AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTAGGT
Found at i:37404868 original size:41 final size:41
Alignment explanation
Indices: 37404806--37404905 Score: 184
Period size: 41 Copynumber: 2.5 Consensus size: 41
37404796 CATTTTTTAC
*
37404806 TAAAACGCTGCTAAAAA-CAGAGCATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGG
37404846 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGG
37404887 TAAAACGCCGCTAAAAACC
1 TAAAACGCCGCTAAAAACC
37404906 CCATAACCCC
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
40 16 0.28
41 42 0.72
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGG
Found at i:37405084 original size:14 final size:15
Alignment explanation
Indices: 37405067--37405100 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
37405057 ATCATTATAT
37405067 TTTAAGGAT-TATGG
1 TTTAAGGATATATGG
37405081 TTTAA-GATATATGG
1 TTTAAGGATATATGG
37405095 TTTAAG
1 TTTAAG
37405101 CAGGTTCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 3 0.17
14 15 0.83
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (15 bp):
TTTAAGGATATATGG
Found at i:37405982 original size:15 final size:15
Alignment explanation
Indices: 37405962--37405993 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
37405952 TTTAATTTAG
*
37405962 AAGATAAATGTATAT
1 AAGATAAATATATAT
37405977 AAGATAAATATATAT
1 AAGATAAATATATAT
37405992 AA
1 AA
37405994 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:37408992 original size:134 final size:133
Alignment explanation
Indices: 37408769--37409021 Score: 479
Period size: 134 Copynumber: 1.9 Consensus size: 133
37408759 TGGTGATTCC
*
37408769 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTCTTTAGTG
37408834 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
37408899 TAT
131 TAT
*
37408902 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTTCATGTTTCTATCCAACTTATGTCTTTAGT
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTG-TTTTCATGTTTCTATCCAACTTATGTCTTTAGT
37408967 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
65 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
37409022 TGTTCAGTTC
Statistics
Matches: 117, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
133 30 0.26
134 87 0.74
ACGTcount: A:0.20, C:0.10, G:0.18, T:0.52
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTCTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:37411466 original size:370 final size:359
Alignment explanation
Indices: 37410678--37411573 Score: 1600
Period size: 370 Copynumber: 2.5 Consensus size: 359
37410668 TGTCCATTAT
37410678 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
37410743 AGGCTGAAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
*
37410808 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTTACTATTGAAT
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTTACTATTAAAT
37410873 ATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATA
196 ATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATA
37410938 TTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTA
261 TTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTA
37411003 AATTTCTTTAAAAGTTATAACTACTTTTTATCAA
326 AATTTCTTTAAAAGTTATAACTACTTTTTATCAA
37411037 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
37411102 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTTCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
37411167 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCTC
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG--AAAA-----A---AG---
37411232 ATTTACTATTAAATATTTATATAACCTTAATTTATTTCCAATTTACTTAT-AAAATTAAACTACG
183 -TTTACTATTAAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACG
37411296 ATTC-TTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTAAT
247 ATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAAT
37411359 ATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
312 ATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATCAA
**
37411407 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTACGT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
37411472 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
37411537 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
37411574 TGTTTCAATT
Statistics
Matches: 517, Mismatches: 6, Indels: 17
0.96 0.01 0.03
Matches are distributed among these distances:
359 173 0.33
361 4 0.01
366 1 0.00
369 2 0.00
370 242 0.47
371 29 0.06
372 18 0.03
373 48 0.09
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (359 bp):
AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGT
AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTTACTATTAAAT
ATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATA
TTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTA
AATTTCTTTAAAAGTTATAACTACTTTTTATCAA
Found at i:37411688 original size:24 final size:24
Alignment explanation
Indices: 37411661--37411728 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
37411651 ATTATTATTG
*
37411661 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
37411685 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
37411709 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
37411729 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 36 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:37411949 original size:15 final size:15
Alignment explanation
Indices: 37411905--37411960 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
37411895 AACGACATGT
37411905 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
37411921 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
37411934 ATATTATTTAATTAA
1 ATATTATTTAATTAA
37411949 ATATTATTTAAT
1 ATATTATTTAAT
37411961 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:37412077 original size:9 final size:9
Alignment explanation
Indices: 37412065--37412281 Score: 125
Period size: 9 Copynumber: 23.6 Consensus size: 9
37412055 TATTTGATAT
*
37412065 CATAATTTA
1 CATAACTTA
37412074 CATAACTTA
1 CATAACTTA
* *
37412083 TATAACATA
1 CATAACTTA
*
37412092 TATAACTTA
1 CATAACTTA
37412101 CATAACTTA
1 CATAACTTA
* *
37412110 TATAACCTA
1 CATAACTTA
37412119 CATAACTTA
1 CATAACTTA
*
37412128 TATAACTTA
1 CATAACTTA
* *
37412137 GATAA-ATA
1 CATAACTTA
*
37412145 TATAACTTA
1 CATAACTTA
37412154 CATAACTTA
1 CATAACTTA
37412163 CATAATACTTA
1 CAT-A-ACTTA
* *
37412174 AATATATTTTATA
1 CATA-A--CT-TA
*
37412187 CCATAAATTA
1 -CATAACTTA
37412197 CATAACTTA
1 CATAACTTA
*
37412206 CATAACTTT
1 CATAACTTA
*
37412215 TATAACTTA
1 CATAACTTA
* *
37412224 GATAA-ATA
1 CATAACTTA
* *
37412232 TATAATTTA
1 CATAACTTA
*
37412241 CATAA-ATA
1 CATAACTTA
* * *
37412249 TATATCATA
1 CATAACTTA
*
37412258 TCATAAATTA
1 -CATAACTTA
37412268 CATAACTTA
1 CATAACTTA
37412277 CATAA
1 CATAA
37412282 TACTTAAATA
Statistics
Matches: 162, Mismatches: 36, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
8 17 0.10
9 119 0.73
10 11 0.07
11 8 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:37412087 original size:18 final size:18
Alignment explanation
Indices: 37412065--37412281 Score: 153
Period size: 18 Copynumber: 12.3 Consensus size: 18
37412055 TATTTGATAT
* *
37412065 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
37412083 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
37412101 CATAACTTATATAACCTA
1 CATAACTTATATAACTTA
37412119 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
37412137 GATAA-ATATATAACTTA
1 CATAACTTATATAACTTA
*
37412154 CATAACTTACATAATACTTA
1 CATAACTTATAT-A-ACTTA
* *
37412174 AATATA-TTTTAT-AC---
1 CATA-ACTTATATAACTTA
* *
37412188 CATAAATTACATAACTTA
1 CATAACTTATATAACTTA
*
37412206 CATAACTTTTATAACTTA
1 CATAACTTATATAACTTA
* * *
37412224 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
37412241 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
37412258 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
37412277 CATAA
1 CATAA
37412282 TACTTAAATA
Statistics
Matches: 154, Mismatches: 34, Indels: 22
0.73 0.16 0.10
Matches are distributed among these distances:
13 1 0.01
14 7 0.05
15 2 0.01
17 39 0.25
18 83 0.54
19 9 0.06
20 12 0.08
21 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:37412253 original size:123 final size:114
Alignment explanation
Indices: 37412075--37412294 Score: 246
Period size: 123 Copynumber: 1.9 Consensus size: 114
37412065 CATAATTTAC
* * *
37412075 ATAACTTATATAACATATATAACTTACATAACTTATATAACCTACATAACTTATATAACTTAGAT
1 ATAACTTACATAACATATATAACTTACATAACATATATAACCTACATAAATTATAT--C----AT
*
37412140 AAAT-ATATAACTTACATAACTTACATAATACTTAAATATATTTTATACCATAAATTAC
60 --ATCATA-AA-TTACATAACTTACATAATACTTAAATATATTTGATACCATAAATTAC
* * * **
37412198 ATAACTTACATAACTTTTATAACTTAGATAA-ATATATAATTTACATAAATATATATCATATCAT
1 ATAACTTACATAACATATATAACTTACATAACATATATAACCTACATAAAT-TATATCATATCAT
37412262 AAATTACATAACTTACATAATACTTAAATATAT
65 AAATTACATAACTTACATAATACTTAAATATAT
37412295 ATCGTATCAT
Statistics
Matches: 87, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
114 30 0.34
115 4 0.05
116 3 0.03
117 2 0.02
121 1 0.01
122 15 0.17
123 32 0.37
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (114 bp):
ATAACTTACATAACATATATAACTTACATAACATATATAACCTACATAAATTATATCATATCATA
AATTACATAACTTACATAATACTTAAATATATTTGATACCATAAATTAC
Found at i:37418395 original size:43 final size:43
Alignment explanation
Indices: 37418372--37418577 Score: 358
Period size: 43 Copynumber: 4.8 Consensus size: 43
37418362 TAAAAAAAGG
* *
37418372 GCCGCTAAAAGCCTTGACGTTTAGCGGCGTTTTTCCCACAAAC
1 GCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
37418415 GCCGCTAAAAGCCTTGACCTATAGCGGCGCTTTTACCACAAAC
1 GCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAAC
37418458 GCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAAC
37418501 GCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
37418544 GCCGCTAAAAGCCTTGACTTTTAGCGGCGTTTTT
1 GCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
37418578 TCCAATAAAC
Statistics
Matches: 155, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 155 1.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (43 bp):
GCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:37424139 original size:13 final size:14
Alignment explanation
Indices: 37424108--37424145 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
37424098 TATAGATATG
*
37424108 ATTTTTTTTCAGTTC
1 ATTTTATTT-AGTTC
37424123 ATTTTATTTAGTT-
1 ATTTTATTTAGTTC
37424136 ATTTTATTTA
1 ATTTTATTTA
37424146 TATTACTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 4 0.18
15 8 0.36
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.68
Consensus pattern (14 bp):
ATTTTATTTAGTTC
Found at i:37431138 original size:12 final size:12
Alignment explanation
Indices: 37431121--37431145 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37431111 TCTAGCTTGA
37431121 TTGAGGTATGTT
1 TTGAGGTATGTT
37431133 TTGAGGTATGTT
1 TTGAGGTATGTT
37431145 T
1 T
37431146 GATGATGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (12 bp):
TTGAGGTATGTT
Found at i:37431237 original size:28 final size:29
Alignment explanation
Indices: 37431201--37431259 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
37431191 AAGTGATTTT
*
37431201 TTGAAAAAAATGTCAATT-A-GGGATTAAA
1 TTGAAAAAAATGTAAATTGATGGG-TTAAA
* *
37431229 TTGAGAAAAGTGTAAATTGATGGGTTAAA
1 TTGAAAAAAATGTAAATTGATGGGTTAAA
37431258 TT
1 TT
37431260 TTGAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 15 0.58
29 8 0.31
30 3 0.12
ACGTcount: A:0.44, C:0.02, G:0.22, T:0.32
Consensus pattern (29 bp):
TTGAAAAAAATGTAAATTGATGGGTTAAA
Found at i:37435142 original size:30 final size:30
Alignment explanation
Indices: 37435107--37435167 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
37435097 TCCTTAACTC
37435107 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * * *
37435137 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
37435167 A
1 A
37435168 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:37437222 original size:25 final size:25
Alignment explanation
Indices: 37437193--37437249 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
37437183 TATTTTCTCA
* *
37437193 AAATTAAAATTATT-AATAATTCAAT
1 AAATTAAAA-AATTAAATAATTAAAT
37437218 AAATTAAAAAATTAAATAATTAAAT
1 AAATTAAAAAATTAAATAATTAAAT
37437243 -AATTAAA
1 AAATTAAA
37437250 TAAAATTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 10 0.34
25 19 0.66
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
AAATTAAAAAATTAAATAATTAAAT
Found at i:37437250 original size:8 final size:8
Alignment explanation
Indices: 37437194--37437252 Score: 66
Period size: 8 Copynumber: 7.2 Consensus size: 8
37437184 ATTTTCTCAA
37437194 AATTAAAAT
1 AATT-AAAT
*
37437203 TATT-AAT
1 AATTAAAT
*
37437210 AATTCAAT
1 AATTAAAT
*
37437218 AAATTAAAA
1 -AATTAAAT
37437227 AATTAAAT
1 AATTAAAT
37437235 AATTAAAT
1 AATTAAAT
37437243 AATTAAAT
1 AATTAAAT
37437251 AA
1 AA
37437253 AATTGAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
7 6 0.14
8 28 0.65
9 9 0.21
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (8 bp):
AATTAAAT
Found at i:37437980 original size:22 final size:20
Alignment explanation
Indices: 37437941--37437987 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
37437931 TGTAAAGTTG
37437941 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
37437960 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
37437983 ATAAT
1 ATAAT
37437988 TATCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:37447137 original size:30 final size:30
Alignment explanation
Indices: 37447120--37447179 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
37447110 TTACTAATTT
*
37447120 GATAGCCGAAGCTATCCCTTTTCATAGATC
1 GATAGCCAAAGCTATCCCTTTTCATAGATC
*
37447150 GATAGCCAAAGCTGTCCCTTTTCATAGATC
1 GATAGCCAAAGCTATCCCTTTTCATAGATC
37447180 AATGGTCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30
Consensus pattern (30 bp):
GATAGCCAAAGCTATCCCTTTTCATAGATC
Found at i:37455480 original size:39 final size:39
Alignment explanation
Indices: 37455397--37455613 Score: 303
Period size: 39 Copynumber: 5.6 Consensus size: 39
37455387 AGGATTTTAA
* * * * *
37455397 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTGTAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
*
37455435 CCGGGCTAAGTCCCGAAGGCATTCGTACTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
37455474 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * *
37455513 CCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
37455552 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
37455591 CTGGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
37455614 TGGGTTGGAA
Statistics
Matches: 161, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 20 0.12
39 137 0.85
40 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:37458258 original size:16 final size:16
Alignment explanation
Indices: 37458234--37458267 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
37458224 TTCTTGCAAT
37458234 TTAATTTTAATTATTTC
1 TTAATTTTAATT-TTTC
37458251 TTAA-TTTAATTTTTC
1 TTAATTTTAATTTTTC
37458266 TT
1 TT
37458268 TCTCTTGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 7 0.41
17 4 0.24
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (16 bp):
TTAATTTTAATTTTTC
Found at i:37461337 original size:54 final size:55
Alignment explanation
Indices: 37461221--37461340 Score: 161
Period size: 54 Copynumber: 2.2 Consensus size: 55
37461211 CTGCCAAAAC
* * *
37461221 AACACGGGCATTCGACACGCCCGTGCCTTGAAATCGTGGCCGAACTTGTCAAATT
1 AACACGGGCATTCGACACGCCCGTGCCTAGAAACCGTGGCCGAACCTGTCAAATT
* * * * *
37461276 AACACGGGCGTTCGACACGCCTGTGCCTAG-CACCGTGGTCGAACCTGTTAAATT
1 AACACGGGCATTCGACACGCCCGTGCCTAGAAACCGTGGCCGAACCTGTCAAATT
37461330 AACACGGGCAT
1 AACACGGGCAT
37461341 GGGCCTACAT
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
54 29 0.52
55 27 0.48
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (55 bp):
AACACGGGCATTCGACACGCCCGTGCCTAGAAACCGTGGCCGAACCTGTCAAATT
Found at i:37468264 original size:15 final size:15
Alignment explanation
Indices: 37468244--37468274 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
37468234 TTTACCCGTA
37468244 TGGACAATATAAGGC
1 TGGACAATATAAGGC
37468259 TGGACAATATAAGGC
1 TGGACAATATAAGGC
37468274 T
1 T
37468275 ATCTACCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.23
Consensus pattern (15 bp):
TGGACAATATAAGGC
Found at i:37471055 original size:13 final size:14
Alignment explanation
Indices: 37471033--37471065 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
37471023 CGAAGATTAT
37471033 AGAGTAGACAAT-C
1 AGAGTAGACAATAC
*
37471046 AGAGTCGACAATAC
1 AGAGTAGACAATAC
37471060 AGAGTA
1 AGAGTA
37471066 CGAGGTAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.45, C:0.15, G:0.24, T:0.15
Consensus pattern (14 bp):
AGAGTAGACAATAC
Found at i:37472552 original size:47 final size:47
Alignment explanation
Indices: 37472474--37473225 Score: 1074
Period size: 47 Copynumber: 15.6 Consensus size: 47
37472464 CCCTTCGGGA
* * * * *
37472474 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37472521 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37472568 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37472615 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37472666 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37472713 CTTATCACATATATATATACACTTTCACATTCATCACATTGCCCACTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37472764 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37472811 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37472858 CTTATCACATATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37472909 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37472956 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37473005 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37473052 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
37473101 CTTATCACATATATA-TTTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37473147 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37473196 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
37473226 TCAAATATAC
Statistics
Matches: 635, Mismatches: 51, Indels: 38
0.88 0.07 0.05
Matches are distributed among these distances:
46 34 0.05
47 340 0.54
48 7 0.01
49 124 0.20
51 130 0.20
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37472776 original size:145 final size:143
Alignment explanation
Indices: 37472474--37473225 Score: 1136
Period size: 145 Copynumber: 5.2 Consensus size: 143
37472464 CCCTTCGGGA
* * * * *
37472474 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
37472539 TTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
37472602 TCGGCCATTAGGC
131 TTGGCCATTCGGC
37472615 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
1 CTTATCAC----ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
37472680 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTC
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTC
* *
37472745 ATCACATTGCCCACTCGGC
125 ATCACATTGGCCATTCGGC
* * * * *
37472764 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
37472829 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCA
*
37472894 CATTGGTCATTCGGC
129 CATTGGCCATTCGGC
* *
37472909 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* *
37472974 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
* *
37473037 CATCGGCCATTAGGC
129 CATTGGCCATTCGGC
37473052 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA-
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
** *
37473116 TTTTTTACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
37473181 CATTGGCCATTCGGC
129 CATTGGCCATTCGGC
37473196 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
37473226 TCAAATATAC
Statistics
Matches: 562, Mismatches: 35, Indels: 27
0.90 0.06 0.04
Matches are distributed among these distances:
141 8 0.01
142 56 0.10
143 51 0.09
144 45 0.08
145 316 0.56
147 45 0.08
149 41 0.07
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTCGGC
Found at i:37472913 original size:243 final size:241
Alignment explanation
Indices: 37472474--37473225 Score: 1261
Period size: 243 Copynumber: 3.1 Consensus size: 241
37472464 CCCTTCGGGA
*
37472474 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCTGTCACATATATAC
37472537 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
37472602 TCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
131 TCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
37472667 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37472713 CTTATCACATATATATATACACTTTCACATTCATCACATTGCCCACTCGGCCCTGTCACATATAT
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCTGTCACATATAT
37472778 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCA
*
37472843 CATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGTCATTCGG
129 CATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGG
37472908 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
194 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37472956 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCTGTCACATATATAC
*
37473021 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* * * * *
37473086 CATTGGCCATTCGGCCTTATCACATATATAT-T----TTTTACATTCATCACATCGGCCATTAGG
129 CATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGG
* *
37473146 CCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
194 CCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37473196 CTTATCAC--ATATATACACTTTCACATTCAT
1 CTTATCACATATATATACACTTTCACATTCAT
37473226 TCAAATATAC
Statistics
Matches: 489, Mismatches: 16, Indels: 17
0.94 0.03 0.03
Matches are distributed among these distances:
238 55 0.11
239 8 0.02
240 45 0.09
241 93 0.19
242 2 0.00
243 286 0.58
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (241 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCTGTCACATATATAC
ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37474632 original size:85 final size:85
Alignment explanation
Indices: 37474503--37474681 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
37474493 TATTTTATTG
*
37474503 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
37474568 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
37474588 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
37474653 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
37474673 CCCATGCTC
1 CCCATGCTC
37474682 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:37476393 original size:40 final size:40
Alignment explanation
Indices: 37476367--37476752 Score: 621
Period size: 40 Copynumber: 9.7 Consensus size: 40
37476357 TGATTACTCT
* * * *
37476367 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* ** * *
37476407 TTGGGGTTTAGCACGGATATATCACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
37476447 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
37476487 TCGGGACTTAGCCCAGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
37476527 TCGGGACTTAGCTCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
37476567 TCGGGACTTAGCCCGGATATATCACTAGCACGAAT-CATCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGC-TCC
* *
37476607 TCGGGACTTAGCCCAGATATATCACTTGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
37476647 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
37476687 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
37476727 TCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
37476753 CTCAATTCTC
Statistics
Matches: 320, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 318 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:37476578 original size:23 final size:23
Alignment explanation
Indices: 37476512--37476578 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
37476502 GATATATCAC
37476512 TAGCACGAATGCTCCTCGGGACT
1 TAGCACGAATGCTCCTCGGGACT
* * * *
37476535 TAGCTCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCCTCGGGACT
37476552 TAGCACGAATGCTCCTCGGGACT
1 TAGCACGAATGCTCCTCGGGACT
37476575 TAGC
1 TAGC
37476579 CCGGATATAT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 3 0.10
19 2 0.07
21 2 0.07
22 3 0.10
23 12 0.40
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (23 bp):
TAGCACGAATGCTCCTCGGGACT
Found at i:37478259 original size:47 final size:47
Alignment explanation
Indices: 37478181--37478982 Score: 1100
Period size: 47 Copynumber: 16.6 Consensus size: 47
37478171 CCCTTCGGGA
* * * * * *
37478181 CTTATCATATTTATACACTTTCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37478228 CCTGTCACATATATCCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37478275 CTTATCACATATATACACCTTCACATTCATCACATCAGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37478322 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37478373 CCTATCACATATATGCACTTTCACATTCATCTCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37478420 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37478467 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37478518 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37478565 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCTACTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37478616 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37478663 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37478710 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37478761 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37478808 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37478857 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37478904 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37478953 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
37478983 TCAAATATAC
Statistics
Matches: 673, Mismatches: 62, Indels: 40
0.87 0.08 0.05
Matches are distributed among these distances:
47 413 0.61
49 89 0.13
51 171 0.25
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37478455 original size:145 final size:143
Alignment explanation
Indices: 37478186--37478982 Score: 1143
Period size: 145 Copynumber: 5.5 Consensus size: 143
37478176 CGGGACTTAT
* * * * * * *
37478186 CATATTTATACACTTTCACATCCATCACGTTGGCCACTAGGCCCTGTCACATATATCCACTTTCA
1 CATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCA
* * *
37478251 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCAGCCA
66 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
*
37478316 TTAGACCTTATCA
131 TTAGGCCTTATCA
* * * *
37478329 CATATATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACATATATGCACTTT
1 C--ATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
* *
37478394 CACATTCATCTCATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
64 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
37478459 CATTAGGCCTTATCA
129 CATTAGGCCTTATCA
*
37478474 CATATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTT
1 C--ATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTT
37478539 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACAT
64 CACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATATACACTTTCACATTCATCACAT
* * * * * *
37478604 TGGCTACTCGGCCCTGTCA
125 CGGCCATTAGGCCTTATCA
* *
37478623 C--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
1 CATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCA
*
37478686 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTG
66 CATTCATCACATCGGCCATTAGGCCTTATCAC----ATATATACACTTTCACATTCATCACATCG
*
37478751 GCCATTCGGCCTTATCA
127 GCCATTAGGCCTTATCA
*
37478768 C--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
1 CATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTT
* * *
37478831 CACATTCATCACATTGGCCATTTGGCCTTATCACATATATACATTTTCACATTCATCACATCGGC
64 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
37478896 CATTAGGCCTTATCA
129 CATTAGGCCTTATCA
*
37478911 CATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCA
1 CATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCA
37478976 CATTCAT
66 CATTCAT
37478983 TCAAATATAC
Statistics
Matches: 608, Mismatches: 36, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
143 67 0.11
145 455 0.75
147 45 0.07
149 41 0.07
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (143 bp):
CATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTATCA
Done.